AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0006850

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0006850 MtrunA17_Chr1g0149061 96.891 772 24 0 1 772 1 772 0.0 1449
Msa0006850 MtrunA17_Chr3g0138061 77.727 220 48 1 1 219 4 223 1.07e-120 384
Msa0006850 MtrunA17_Chr7g0260441 60.920 174 67 1 1 173 1 174 4.52e-66 231
Msa0006850 MtrunA17_Chr7g0260441 39.474 266 93 12 550 771 407 648 1.52e-18 90.5
Msa0006850 MtrunA17_Chr4g0038431 55.030 169 74 2 6 173 3 170 1.87e-52 179
Msa0006850 MtrunA17_Chr3g0113441 54.819 166 73 2 9 173 66 230 1.43e-49 174
Msa0006850 MtrunA17_Chr7g0274841 50.888 169 81 2 6 173 3 170 5.01e-49 170
Msa0006850 MtrunA17_Chr4g0045321 52.096 167 78 2 9 173 6 172 5.37e-49 176
Msa0006850 MtrunA17_Chr3g0104751 54.217 166 74 2 9 173 36 200 7.98e-48 168
Msa0006850 MtrunA17_Chr8g0374621 50.575 174 82 3 6 176 3 175 3.77e-46 169
Msa0006850 MtrunA17_Chr3g0145501 46.927 179 93 2 9 186 14 191 4.80e-46 162
Msa0006850 MtrunA17_Chr7g0270991 44.262 183 86 4 1 178 90 261 5.31e-39 145
Msa0006850 MtrunA17_Chr8g0353571 44.186 172 90 4 5 173 16 184 2.78e-37 137
Msa0006850 MtrunA17_Chr1g0193711 45.304 181 88 3 1 178 79 251 1.12e-35 135
Msa0006850 MtrunA17_Chr4g0037281 47.024 168 85 4 9 173 48 214 1.63e-35 134
Msa0006850 MtrunA17_Chr1g0213971 45.294 170 80 4 9 173 79 240 1.43e-33 129
Msa0006850 MtrunA17_Chr8g0351571 38.462 130 66 4 26 153 15 132 9.66e-19 84.0
Msa0006850 MtrunA17_Chr2g0321111 38.462 143 73 5 32 171 482 612 1.22e-17 87.4
Msa0006850 MtrunA17_Chr7g0266721 41.667 132 63 4 26 155 24 143 2.58e-17 80.1
Msa0006850 MtrunA17_Chr5g0401141 38.346 133 68 5 25 155 358 478 7.45e-16 81.6
Msa0006850 MtrunA17_Chr6g0484281 32.484 157 83 5 23 168 12 156 4.20e-14 75.9
Msa0006850 MtrunA17_Chr8g0357591 31.847 157 84 5 23 168 12 156 3.60e-13 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0006850 AT4G32420.1 71.429 175 49 1 1 174 1 175 1.03e-83 284
Msa0006850 AT4G32420.5 71.429 175 49 1 1 174 1 175 1.03e-83 284
Msa0006850 AT4G32420.3 71.429 175 49 1 1 174 1 175 1.03e-83 284
Msa0006850 AT4G32420.6 71.429 175 49 1 1 174 1 175 1.03e-83 284
Msa0006850 AT4G32420.4 71.875 160 44 1 1 159 1 160 1.79e-75 261
Msa0006850 AT3G63400.2 60.920 174 67 1 1 173 1 174 1.63e-67 228
Msa0006850 AT3G63400.3 60.920 174 67 1 1 173 1 174 2.20e-66 231
Msa0006850 AT3G63400.4 60.920 174 67 1 1 173 1 174 2.20e-66 231
Msa0006850 AT3G63400.1 60.920 174 67 1 1 173 1 174 2.20e-66 231
Msa0006850 AT3G56070.1 53.254 169 77 2 6 173 3 170 1.08e-50 175
Msa0006850 AT3G56070.2 53.254 169 77 2 6 173 3 170 1.08e-50 175
Msa0006850 AT4G38740.1 53.254 169 75 4 7 173 4 170 3.66e-50 174
Msa0006850 AT5G58710.1 53.012 166 76 2 9 173 37 201 7.26e-50 174
Msa0006850 AT2G29960.1 53.614 166 75 2 9 173 34 198 1.94e-49 173
Msa0006850 AT2G29960.3 53.614 166 75 2 9 173 34 198 1.94e-49 173
Msa0006850 AT4G34870.1 50.888 169 81 2 6 173 3 170 1.14e-48 169
Msa0006850 AT2G21130.1 51.479 169 80 2 6 173 4 171 1.29e-48 169
Msa0006850 AT3G55920.1 50.000 166 81 2 9 173 61 225 6.85e-48 169
Msa0006850 AT2G15790.1 52.695 167 77 2 9 173 6 172 1.14e-47 173
Msa0006850 AT2G16600.1 49.112 169 84 2 6 173 4 171 2.45e-45 160
Msa0006850 AT2G29960.2 50.602 166 70 3 9 173 34 188 8.22e-44 157
Msa0006850 AT2G38730.1 47.674 172 84 4 5 173 30 198 7.86e-39 143
Msa0006850 AT3G62030.3 48.630 146 66 2 9 153 96 233 8.63e-38 142
Msa0006850 AT3G62030.1 48.630 146 66 2 9 153 97 234 9.12e-38 142
Msa0006850 AT3G62030.2 48.630 146 66 2 9 153 150 287 1.05e-36 140
Msa0006850 AT4G34960.1 44.444 171 92 3 9 177 49 218 1.95e-36 137
Msa0006850 AT2G16600.2 43.195 169 72 2 6 173 4 149 4.44e-35 130
Msa0006850 AT5G13120.1 43.275 171 82 5 9 173 92 253 2.65e-34 132
Msa0006850 AT5G13120.2 43.275 171 82 5 9 173 88 249 5.39e-34 131
Msa0006850 AT3G22920.1 44.828 174 80 8 6 173 3 166 1.55e-32 126
Msa0006850 AT4G34960.2 48.305 118 59 2 9 125 49 165 7.94e-30 116
Msa0006850 AT4G32420.2 66.154 65 22 0 110 174 1 65 2.42e-22 103
Msa0006850 AT1G01940.1 40.000 130 64 4 26 153 15 132 4.59e-20 88.2
Msa0006850 AT2G36130.1 40.152 132 65 4 26 155 24 143 4.22e-18 82.8
Msa0006850 AT3G44600.1 37.162 148 78 5 27 171 491 626 1.33e-17 87.8
Msa0006850 AT5G67530.1 37.162 148 78 6 25 169 357 492 4.27e-16 82.8
Msa0006850 AT1G53720.1 33.571 140 71 4 23 152 12 139 8.63e-13 72.0
Msa0006850 AT1G53720.2 33.571 140 71 4 23 152 12 139 1.59e-11 67.0

Find 227 sgRNAs with CRISPR-Local

Find 561 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGCTTCCAGCTCATTTA+AGG 0.110768 1_1:+9841998 None:intergenic
GAGATTTGGCCTATCCTTTA+TGG 0.157069 1_1:-9841700 Msa0006850:three_prime_UTR
CTCTTTCTTGACACTCTTAC+AGG 0.211910 1_1:+9843064 None:intergenic
TTGCGAATTGGGCTAGGGCT+TGG 0.226989 1_1:+9842253 None:intergenic
CTTTCTGCTCTCAGATATTC+AGG 0.239140 1_1:-9842623 Msa0006850:intron
TTCTTCCATCAGATCGTAAA+AGG 0.249523 1_1:-9847250 Msa0006850:CDS
GTACCGAATTCGGACCTTTC+AGG 0.264264 1_1:-9842030 Msa0006850:three_prime_UTR
GGAACTCCTGCTGAGACTTC+TGG 0.281243 1_1:+9843012 None:intergenic
TACTACAAGACACTGATAAC+TGG 0.294409 1_1:+9841745 None:intergenic
GAAGAATTCCCAAAAGAAAA+TGG 0.301545 1_1:-9843675 Msa0006850:CDS
CTTCCCCTTCTGATACGTTT+TGG 0.307276 1_1:+9842836 None:intergenic
TTTCCCCTTTCAGGAGAAAA+AGG 0.308702 1_1:-9847316 Msa0006850:intron
TAAAATACCGTTCGTGTGTC+TGG 0.318072 1_1:-9841611 Msa0006850:three_prime_UTR
TGCGAATTGGGCTAGGGCTT+GGG 0.324125 1_1:+9842254 None:intergenic
GGAGGTGAGCGGTTGCGAAT+TGG 0.325475 1_1:+9842241 None:intergenic
GACACTGATAACTGGGGATA+TGG 0.325870 1_1:+9841753 None:intergenic
CTTCACCTTTAGCTTGAATC+AGG 0.326116 1_1:+9842052 None:intergenic
TTGTGTGGTGTCAGGGAATC+AGG 0.326784 1_1:-9844477 Msa0006850:intron
CTCCTGCTTATTCTTCTAAC+AGG 0.326957 1_1:+9843304 None:intergenic
TTCTCCAGGCCTTCTATCTA+TGG 0.340779 1_1:-9846117 Msa0006850:CDS
GAGGTGAGCGGTTGCGAATT+GGG 0.350999 1_1:+9842242 None:intergenic
AGTCCAGTCATCCTCAGTTT+TGG 0.353871 1_1:-9843757 Msa0006850:CDS
ATACTGCTTTACCTGCTTGC+TGG 0.356419 1_1:-9841959 Msa0006850:three_prime_UTR
ATGGCATGTTGAAAGATAAT+AGG 0.357054 1_1:-9841867 Msa0006850:three_prime_UTR
AAGAAAGGCCTGGTCTCTTA+TGG 0.357463 1_1:-9842085 Msa0006850:CDS
AGCATTCTAACCTGGGAACT+TGG 0.364036 1_1:+9846265 None:intergenic
GAAAAGTAAGCAAAGATAAC+AGG 0.371011 1_1:-9842138 Msa0006850:CDS
AATTATCATGCTAACCATAA+AGG 0.371072 1_1:+9841686 None:intergenic
GAGTTTAACTGATGGAGATT+TGG 0.372096 1_1:-9841714 Msa0006850:three_prime_UTR
CTTCTGCTAAACCTCCTCTT+TGG 0.376794 1_1:+9843382 None:intergenic
TGAATGTGTGTTGTTCTCAT+AGG 0.378971 1_1:+9843217 None:intergenic
GGTGTCCTTGCCCTACGAAC+AGG 0.379140 1_1:+9842902 None:intergenic
CTCCCCTTCCTCCCTCTCAC+GGG 0.379675 1_1:+9843256 None:intergenic
TGCCTTTCTTCACTTCTGTC+AGG 0.388286 1_1:+9843615 None:intergenic
TAAAGGTGAAGTACCGAATT+CGG 0.397418 1_1:-9842040 Msa0006850:three_prime_UTR
TTTCCGTCTGAGCTTCTAGA+AGG 0.397442 1_1:+9842106 None:intergenic
CACACATCTATATGGGTCAT+AGG 0.398441 1_1:+9841660 None:intergenic
AAAGGAGTCAGTCCTAATAC+TGG 0.399979 1_1:-9847298 Msa0006850:CDS
GAGCGGTTGCGAATTGGGCT+AGG 0.400236 1_1:+9842247 None:intergenic
GGAGTTCTTCTCCGTGGCGG+TGG 0.402817 1_1:+9842566 None:intergenic
GCCCCGTGAGAGGGAGGAAG+GGG 0.406880 1_1:-9843258 Msa0006850:CDS
AAAGATCATTCTCAGATAGA+TGG 0.415084 1_1:-9844366 Msa0006850:intron
ACGAACAGGGCTACGACTCC+TGG 0.416701 1_1:+9842916 None:intergenic
AGAATTGAGAATCTACGCTT+TGG 0.417082 1_1:+9849344 None:intergenic
AAGCCCCGTGAGAGGGAGGA+AGG 0.417883 1_1:-9843260 Msa0006850:CDS
CGTAAAAGGCTCCATTGTTA+AGG 0.420698 1_1:-9847236 Msa0006850:intron
AAAGATACTCTTATGCTAGA+AGG 0.424339 1_1:-9842802 Msa0006850:CDS
GAGATAAACGTCGAGAAAAG+AGG 0.427527 1_1:-9844863 Msa0006850:CDS
TTCCCTGAAAGGTCCGAATT+CGG 0.432085 1_1:+9842027 None:intergenic
ATTGCTGATCGTGACACTCT+TGG 0.435667 1_1:-9846092 Msa0006850:CDS
ATCCTCGTAGTAAGTTGAAA+TGG 0.436312 1_1:-9841886 Msa0006850:three_prime_UTR
GCAATCACCGCAGCTATTCC+AGG 0.436681 1_1:-9842934 Msa0006850:CDS
TCCTCTTTGGACTAATGCTC+GGG 0.437106 1_1:+9843395 None:intergenic
GCTCACCTCCTCGTGTGAAT+AGG 0.442557 1_1:-9842228 Msa0006850:CDS
GAATTGAGAATCTACGCTTT+GGG 0.448105 1_1:+9849345 None:intergenic
AGCCCCGTGAGAGGGAGGAA+GGG 0.450891 1_1:-9843259 Msa0006850:CDS
CTCTTGCTCACGGTTTGCTT+AGG 0.451493 1_1:+9843451 None:intergenic
GGCCTGGTCTCTTATGGAAA+TGG 0.453229 1_1:-9842079 Msa0006850:CDS
CAGCAATCGCCATAGATAGA+AGG 0.454132 1_1:+9846108 None:intergenic
CGGGGATCCTTATGAAAGAA+TGG 0.458164 1_1:-9847689 Msa0006850:CDS
GAATGTGTGTTGTTCTCATA+GGG 0.458247 1_1:+9843218 None:intergenic
CTACGATCGGGACTTCTCAC+AGG 0.459140 1_1:+9843175 None:intergenic
TCGATATTTGCTCGGACGTG+TGG 0.459478 1_1:-9841790 Msa0006850:three_prime_UTR
ACTTCTGTCAGGTCTATAGT+TGG 0.460346 1_1:+9843626 None:intergenic
TACCGAATTCGGACCTTTCA+GGG 0.460747 1_1:-9842029 Msa0006850:three_prime_UTR
GCATTCTAACCTGGGAACTT+GGG 0.462406 1_1:+9846266 None:intergenic
TCTCCCCTTCCTCCCTCTCA+CGG 0.463089 1_1:+9843255 None:intergenic
CCTCTGCTTGCCACTCTGAC+AGG 0.466727 1_1:+9842956 None:intergenic
CTTCTGGCAGATGATCTAAC+TGG 0.466999 1_1:+9843028 None:intergenic
CTGATAACTGGGGATATGGA+TGG 0.468909 1_1:+9841757 None:intergenic
CTCCTCTTTGGACTAATGCT+CGG 0.471032 1_1:+9843394 None:intergenic
GCAGGAGTCCATCTCGATCC+AGG 0.473773 1_1:-9842186 Msa0006850:CDS
AGAAGTCTCAGCAGGAGTTC+CGG 0.476303 1_1:-9843010 Msa0006850:CDS
ATCGCCATAGATAGAAGGCC+TGG 0.476516 1_1:+9846113 None:intergenic
TACCTTCGTGCTCGGTAAGG+TGG 0.478800 1_1:+9842280 None:intergenic
TAGTCATGAAGTGCGGAGAA+AGG 0.479480 1_1:-9845102 Msa0006850:CDS
GGAGACTTTATCAATCGAAA+TGG 0.482357 1_1:-9846903 Msa0006850:intron
AGTCATGAAGTGCGGAGAAA+GGG 0.483951 1_1:-9845101 Msa0006850:CDS
GCAGCCTAGCAACGGCATCA+AGG 0.484401 1_1:-9843649 Msa0006850:CDS
TTGAAGAAAATTGAAGATGT+AGG 0.484894 1_1:-9845429 Msa0006850:CDS
CCTGTGAGGTACCGCTATAA+TGG 0.487018 1_1:-9842758 Msa0006850:CDS
CGATATTTGCTCGGACGTGT+GGG 0.487868 1_1:-9841789 Msa0006850:three_prime_UTR
ATGGAAGGAATGACCGTGAC+AGG 0.488207 1_1:-9842739 Msa0006850:intron
TGGAAAATCACTGCACTACA+AGG 0.491246 1_1:-9847278 Msa0006850:CDS
GAGTTCTTCTCCGTGGCGGT+GGG 0.491381 1_1:+9842567 None:intergenic
GGAGGAAAAGAAAGAGATCT+AGG 0.492138 1_1:-9844914 Msa0006850:CDS
GATAAATCAATTCCTAGCAT+TGG 0.493739 1_1:+9841906 None:intergenic
TGTGTCTGGAAGTTTATGTA+TGG 0.494033 1_1:-9841597 Msa0006850:three_prime_UTR
TTATGGACGTGTCTGTAGAC+GGG 0.495599 1_1:-9847708 Msa0006850:CDS
AAGCTGATCACCATCTTGAT+AGG 0.495613 1_1:-9846046 Msa0006850:intron
ATGATAATCCAGGAAAATCT+AGG 0.495881 1_1:-9843578 Msa0006850:intron
CTTTGAGAAACAGATCTGGC+AGG 0.498898 1_1:+9843136 None:intergenic
GGAGTCGTAGCCCTGTTCGT+AGG 0.504871 1_1:-9842913 Msa0006850:CDS
TAAGGTGAGGTTTCCCTGAA+AGG 0.506897 1_1:+9842016 None:intergenic
AAACCTCACCTTAAATGAGC+TGG 0.508169 1_1:-9842006 Msa0006850:three_prime_UTR
ACCTTCGTGCTCGGTAAGGT+GGG 0.510824 1_1:+9842281 None:intergenic
AGGCTAAAGCATGATTCTCC+AGG 0.510991 1_1:-9846131 Msa0006850:CDS
GTGCGTCATCATCCCTCAGC+AGG 0.515147 1_1:-9842204 Msa0006850:CDS
AGCGGTTGCGAATTGGGCTA+GGG 0.516195 1_1:+9842248 None:intergenic
CCATTATAGCGGTACCTCAC+AGG 0.516542 1_1:+9842758 None:intergenic
TTTATGGACGTGTCTGTAGA+CGG 0.517412 1_1:-9847709 Msa0006850:CDS
AGCATATACCCCAAGTTCCC+AGG 0.517801 1_1:-9846275 Msa0006850:intron
AGAAGCTCAGACGGAAAGAA+AGG 0.519047 1_1:-9842100 Msa0006850:CDS
GTGTCCTGCTTCTCCTACTC+CGG 0.520890 1_1:+9842320 None:intergenic
AGAGATCAAAACGTAAATCA+AGG 0.521159 1_1:-9844824 Msa0006850:CDS
TAGTGATTCCACAGAAGACC+TGG 0.522322 1_1:+9842168 None:intergenic
GGTACCGGAGTAGGAGAAGC+AGG 0.524088 1_1:-9842324 Msa0006850:CDS
GAGTCGTAGCCCTGTTCGTA+GGG 0.524982 1_1:-9842912 Msa0006850:CDS
TTGGCCTTGATGCCGTTGCT+AGG 0.525249 1_1:+9843645 None:intergenic
GTTCTCCTGATTCAAGCTAA+AGG 0.528237 1_1:-9842057 Msa0006850:exon
CTATACCTTCGTGCTCGGTA+AGG 0.528467 1_1:+9842277 None:intergenic
AAGTTTGAAAATAACCTTGG+TGG 0.528572 1_1:+9842545 None:intergenic
TGATAACTGGGGATATGGAT+GGG 0.534088 1_1:+9841758 None:intergenic
GTGGGCTCCTAAAACGCCTA+GGG 0.534974 1_1:+9842585 None:intergenic
TCTCCAAAACTGAGGATGAC+TGG 0.537196 1_1:+9843754 None:intergenic
TCAGCAGAAGCCCCGTGAGA+GGG 0.541353 1_1:-9843267 Msa0006850:CDS
AGTAACTAATTCCAGCAAGC+AGG 0.545204 1_1:+9841948 None:intergenic
GACCTGACAGAAGTGAAGAA+AGG 0.545679 1_1:-9843617 Msa0006850:CDS
ATCTCGATCCAGGTCTTCTG+TGG 0.546091 1_1:-9842176 Msa0006850:CDS
CTCAGACGGAAAGAAAGGCC+TGG 0.546220 1_1:-9842095 Msa0006850:CDS
TCTGGAAGTTTATGTATGGA+TGG 0.548483 1_1:-9841593 Msa0006850:three_prime_UTR
AGTAAGTATCGATATTTGCT+CGG 0.548811 1_1:-9841798 Msa0006850:three_prime_UTR
ACTACAAGACACTGATAACT+GGG 0.549548 1_1:+9841746 None:intergenic
CATTCTAACCTGGGAACTTG+GGG 0.552470 1_1:+9846267 None:intergenic
ATTCTTCATAAACCAATGCT+AGG 0.554545 1_1:-9841918 Msa0006850:three_prime_UTR
CATCTGCCAGAAGTCTCAGC+AGG 0.557853 1_1:-9843018 Msa0006850:CDS
GGTGGGCTCCTAAAACGCCT+AGG 0.559539 1_1:+9842584 None:intergenic
AAACGTATCAGAAGGGGAAG+AGG 0.560741 1_1:-9842833 Msa0006850:CDS
CTTCCAGCTCATTTAAGGTG+AGG 0.562565 1_1:+9842003 None:intergenic
ACGGCTTTGAGAAACAGATC+TGG 0.562906 1_1:+9843132 None:intergenic
GCAGAAGCCCCGTGAGAGGG+AGG 0.564588 1_1:-9843264 Msa0006850:CDS
TCCCCTTCCTCCCTCTCACG+GGG 0.567721 1_1:+9843257 None:intergenic
AGATTCCATGTCGGAATCTG+AGG 0.568884 1_1:+9845010 None:intergenic
AACGATAATTCTAACGGCAA+AGG 0.571157 1_1:-9844420 Msa0006850:CDS
GCTACTTAATTTACCTGTCA+CGG 0.571224 1_1:+9842726 None:intergenic
TTGCTAAGACTTCTACGATC+GGG 0.572343 1_1:+9843163 None:intergenic
TGTCAAGAAAGAGCATAAGC+AGG 0.573617 1_1:-9843054 Msa0006850:CDS
AAAGTCCTCGTGCTCTATCG+CGG 0.575279 1_1:-9843345 Msa0006850:CDS
GAAGATGTAGGCAATGAAGA+AGG 0.580162 1_1:-9845417 Msa0006850:CDS
GACACGTCCATAAACACCAT+GGG 0.580289 1_1:+9847718 None:intergenic
ATACTCTAGCAGAACTCCTA+CGG 0.580573 1_1:+9843113 None:intergenic
TCATGCTAACCATAAAGGAT+AGG 0.580961 1_1:+9841691 None:intergenic
TATCGCGGAGGAGTTTGAGC+AGG 0.581388 1_1:-9843330 Msa0006850:CDS
TTGGGCTATACCTTCGTGCT+CGG 0.581450 1_1:+9842272 None:intergenic
GTCAGCAGAAGCCCCGTGAG+AGG 0.581670 1_1:-9843268 Msa0006850:CDS
GCTTCTCAAAGGAACTCGGC+CGG 0.583443 1_1:+9842991 None:intergenic
CTTCACCAAAACGTATCAGA+AGG 0.584180 1_1:-9842841 Msa0006850:CDS
CAAGTTCATCTAGTGATGAC+AGG 0.586648 1_1:-9844938 Msa0006850:CDS
TCGAGATGGACTCCTGCTGA+GGG 0.589178 1_1:+9842192 None:intergenic
TCTCCTTCTAGAAGCTCAGA+CGG 0.589827 1_1:-9842109 Msa0006850:CDS
GTGTCCTTGCCCTACGAACA+GGG 0.590564 1_1:+9842903 None:intergenic
GACGTGATGGATGATAATCC+AGG 0.591026 1_1:-9843588 Msa0006850:CDS
AATACTCATACTCTTGCTCA+CGG 0.593043 1_1:+9843441 None:intergenic
AAAAGCATGAGTTTAACTGA+TGG 0.593260 1_1:-9841722 Msa0006850:three_prime_UTR
ACAGAAGACCTGGATCGAGA+TGG 0.594604 1_1:+9842178 None:intergenic
GGAGAATCATGCTTTAGCCT+AGG 0.596116 1_1:+9846134 None:intergenic
AAGAGTAACGATAATTCTAA+CGG 0.596671 1_1:-9844426 Msa0006850:CDS
TTCACCAAAACGTATCAGAA+GGG 0.600691 1_1:-9842840 Msa0006850:CDS
AACGTCGAGAAAAGAGGCGA+AGG 0.601122 1_1:-9844857 Msa0006850:CDS
CCTGTCAGAGTGGCAAGCAG+AGG 0.601861 1_1:-9842956 Msa0006850:CDS
TAAGCAAAGATAACAGGTCA+AGG 0.602811 1_1:-9842132 Msa0006850:CDS
AATGGAGCGCAGCCTAGCAA+CGG 0.602971 1_1:-9843657 Msa0006850:CDS
ACCTCACAGGAGACCGAGAG+GGG 0.604150 1_1:+9842771 None:intergenic
GTAGCCCTGTTCGTAGGGCA+AGG 0.604255 1_1:-9842907 Msa0006850:CDS
GATAAACAGACCTATCAAGA+TGG 0.604811 1_1:+9846036 None:intergenic
CTATATGTAGGTACCGGAGT+AGG 0.605022 1_1:-9842333 Msa0006850:intron
TTTGAGAAACAGATCTGGCA+GGG 0.605173 1_1:+9843137 None:intergenic
ATCGAGATGGACTCCTGCTG+AGG 0.606352 1_1:+9842191 None:intergenic
AACCATTTCCATAAGAGACC+AGG 0.606821 1_1:+9842077 None:intergenic
GATAACTGGGGATATGGATG+GGG 0.611519 1_1:+9841759 None:intergenic
CTTGCTAAGACTTCTACGAT+CGG 0.613367 1_1:+9843162 None:intergenic
TGAGGTACCGCTATAATGGA+AGG 0.613583 1_1:-9842754 Msa0006850:CDS
GATACAGAAGGTACTCCCCT+AGG 0.614974 1_1:-9842601 Msa0006850:CDS
CATCTAGTGATGACAGGCGG+AGG 0.620885 1_1:-9844932 Msa0006850:CDS
AGAAAGGCAGCATGACGTGA+TGG 0.628293 1_1:-9843601 Msa0006850:CDS
GCCCGAGCATTAGTCCAAAG+AGG 0.628924 1_1:-9843396 Msa0006850:CDS
CTGGAAGTTTATGTATGGAT+GGG 0.629122 1_1:-9841592 Msa0006850:three_prime_UTR
TACGATCGGGACTTCTCACA+GGG 0.630815 1_1:+9843176 None:intergenic
CGAGCATTAGTCCAAAGAGG+AGG 0.631871 1_1:-9843393 Msa0006850:CDS
TTGCCACTCTGACAGGACTT+CGG 0.633300 1_1:+9842963 None:intergenic
TCAGATATTCAGGATACAGA+AGG 0.633643 1_1:-9842613 Msa0006850:intron
GATCTGTTTCTCAAAGCCGT+AGG 0.636621 1_1:-9843129 Msa0006850:CDS
TACCTCACAGGAGACCGAGA+GGG 0.636761 1_1:+9842770 None:intergenic
GGGCAAGGACACCTCGTGGG+AGG 0.636939 1_1:-9842892 Msa0006850:CDS
GTCCTGTTAGAAGAATAAGC+AGG 0.637563 1_1:-9843306 Msa0006850:CDS
GGTGGAGTTCTTCTCCGTGG+CGG 0.641967 1_1:+9842563 None:intergenic
CATCACGAAGAACAGTCAGT+AGG 0.643686 1_1:-9843090 Msa0006850:CDS
GGAAAATCACTGCACTACAA+GGG 0.644386 1_1:-9847277 Msa0006850:CDS
TAATGCTTCTCAAAGGAACT+CGG 0.644665 1_1:+9842987 None:intergenic
CTCCTCCGCGATAGAGCACG+AGG 0.645637 1_1:+9843340 None:intergenic
AGGAAAGATAAACATAGACA+TGG 0.646477 1_1:-9844894 Msa0006850:CDS
GGTCATTCCTTCCATTATAG+CGG 0.649077 1_1:+9842747 None:intergenic
TACGACTCCTGGAATAGCTG+CGG 0.649288 1_1:+9842927 None:intergenic
TCACCAAAACGTATCAGAAG+GGG 0.649609 1_1:-9842839 Msa0006850:CDS
GGTGGGCTTCGTGATATAGA+CGG 0.650609 1_1:+9842298 None:intergenic
CGTAGGGCAAGGACACCTCG+TGG 0.652658 1_1:-9842896 Msa0006850:CDS
CTTCGGCTAATGCTTCTCAA+AGG 0.656324 1_1:+9842980 None:intergenic
ACTGTCAAAATAATTAATTG+TGG 0.662678 1_1:-9845381 Msa0006850:CDS
TATGGACGTGTCTGTAGACG+GGG 0.663263 1_1:-9847707 Msa0006850:CDS
CTTGGTGGAGTTCTTCTCCG+TGG 0.663626 1_1:+9842560 None:intergenic
AGACACGTCCATAAACACCA+TGG 0.666006 1_1:+9847717 None:intergenic
TGAACTTGTGTAAGATGACG+AGG 0.669193 1_1:+9844953 None:intergenic
AGGTTTAGCAGAAGTCCAAG+TGG 0.670229 1_1:-9843373 Msa0006850:CDS
TAGCCGAAGTCCTGTCAGAG+TGG 0.673404 1_1:-9842966 Msa0006850:CDS
ACTTTCAGAAGATTCCATGT+CGG 0.675815 1_1:+9845001 None:intergenic
TATTCACACGAGGAGGTGAG+CGG 0.678307 1_1:+9842230 None:intergenic
TAATTGTGGTGAACACAATG+AGG 0.680177 1_1:-9845367 Msa0006850:CDS
TGGGCTCCTAAAACGCCTAG+GGG 0.681447 1_1:+9842586 None:intergenic
TAACTCTTTCTCCAAAACTG+AGG 0.688409 1_1:+9843746 None:intergenic
GTCCTCGTGCTCTATCGCGG+AGG 0.692339 1_1:-9843342 Msa0006850:CDS
TAGTTCCTCAGATTCCGACA+TGG 0.693411 1_1:-9845015 Msa0006850:CDS
AATTGTGGTGAACACAATGA+GGG 0.693875 1_1:-9845366 Msa0006850:intron
TAAACTTCCAGACACACGAA+CGG 0.695383 1_1:+9841604 None:intergenic
GTAGGGCAAGGACACCTCGT+GGG 0.696905 1_1:-9842895 Msa0006850:CDS
GCACGCCTATTCACACGAGG+AGG 0.702677 1_1:+9842223 None:intergenic
GTACCTCACAGGAGACCGAG+AGG 0.704520 1_1:+9842769 None:intergenic
TGCCATTTCAACTTACTACG+AGG 0.709927 1_1:+9841884 None:intergenic
CTACAAGACACTGATAACTG+GGG 0.710341 1_1:+9841747 None:intergenic
GATCAAAACGTAAATCAAGG+AGG 0.710356 1_1:-9844821 Msa0006850:intron
AAGCAAATAGTCATGAAGTG+CGG 0.712374 1_1:-9845109 Msa0006850:CDS
GTTCATCTAGTGATGACAGG+CGG 0.717464 1_1:-9844935 Msa0006850:CDS
CCTCACAGGAGACCGAGAGG+GGG 0.726559 1_1:+9842772 None:intergenic
TTCGACAGACTCCTCCCACG+AGG 0.730211 1_1:+9842881 None:intergenic
GCCCACCTTACCGAGCACGA+AGG 0.735674 1_1:-9842282 Msa0006850:CDS
ACACGTCCATAAACACCATG+GGG 0.743718 1_1:+9847719 None:intergenic
CACGGAGAAGAACTCCACCA+AGG 0.743784 1_1:-9842559 Msa0006850:intron
GACGCACGCCTATTCACACG+AGG 0.756690 1_1:+9842220 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTTGTTTAAGATTTA+TGG - chr1_1:9846137-9846156 Msa0006850:CDS 10.0%
!! TTAAATTCTAATTAATACTA+AGG - chr1_1:9848226-9848245 Msa0006850:intron 10.0%
!!! AATTTTTTTTTTAAACTTCT+AGG - chr1_1:9848412-9848431 Msa0006850:intron 10.0%
!! TTCAATTGTTAAAACAATAA+GGG + chr1_1:9842538-9842557 None:intergenic 15.0%
!! ATTCAATTGTTAAAACAATA+AGG + chr1_1:9842539-9842558 None:intergenic 15.0%
!! AACAATTGAATATAAAATTG+TGG - chr1_1:9842548-9842567 Msa0006850:intron 15.0%
!! TTAAAATTAATAGTAAGTCA+CGG + chr1_1:9844309-9844328 None:intergenic 15.0%
!! AGTCAAATTATTATAAAAAG+AGG + chr1_1:9845140-9845159 None:intergenic 15.0%
!!! ATTAATTATTTTGACAGTTA+CGG + chr1_1:9845537-9845556 None:intergenic 15.0%
!! GAGATAAAAAAAAAAATTGA+AGG + chr1_1:9846646-9846665 None:intergenic 15.0%
!! GGTATAAAAAATGTTTATGT+TGG + chr1_1:9841557-9841576 None:intergenic 20.0%
!! TATAAAAACGAAAACGAAAT+TGG + chr1_1:9841757-9841776 None:intergenic 20.0%
!! AAACATTAAACTAACAGAAA+GGG + chr1_1:9841950-9841969 None:intergenic 20.0%
!! AAAACATTAAACTAACAGAA+AGG + chr1_1:9841951-9841970 None:intergenic 20.0%
!!! TTTTTCAATTGATAACTGTT+AGG - chr1_1:9841968-9841987 Msa0006850:three_prime_UTR 20.0%
!!! ATGAATAAGGTATTCTTTAT+AGG - chr1_1:9842038-9842057 Msa0006850:three_prime_UTR 20.0%
!!! TAAAACAGTTTAAGACATAA+CGG + chr1_1:9842444-9842463 None:intergenic 20.0%
!!! GTTTTCTAATTTTAGATTGT+TGG - chr1_1:9843125-9843144 Msa0006850:CDS 20.0%
!!! TTTTAGATTGTTGGTTAATT+TGG - chr1_1:9843134-9843153 Msa0006850:CDS 20.0%
!!! AAATCAGTTATTTGTTGATT+AGG + chr1_1:9843556-9843575 None:intergenic 20.0%
!! TGACACATTTCAAAAAAAAA+GGG + chr1_1:9843584-9843603 None:intergenic 20.0%
!! ATGACACATTTCAAAAAAAA+AGG + chr1_1:9843585-9843604 None:intergenic 20.0%
!!! CTTCCATCTATATTATTTTT+TGG - chr1_1:9843723-9843742 Msa0006850:CDS 20.0%
!! CTACCAAAAAATAATATAGA+TGG + chr1_1:9843729-9843748 None:intergenic 20.0%
!!! ACTGTCTTTTTTTTTTTTTG+TGG - chr1_1:9843765-9843784 Msa0006850:intron 20.0%
!!! TTTTTTTTTGTGGTTGAAAA+TGG - chr1_1:9843775-9843794 Msa0006850:intron 20.0%
!!! TTTCTTGTGATATAGTTTTA+AGG - chr1_1:9843873-9843892 Msa0006850:intron 20.0%
!! GAAAAATAATTCACAATATG+AGG + chr1_1:9844064-9844083 None:intergenic 20.0%
!!! TTTGAAATCATGTAATGTTT+TGG - chr1_1:9844400-9844419 Msa0006850:CDS 20.0%
!! ACTGTCAAAATAATTAATTG+TGG - chr1_1:9845539-9845558 Msa0006850:intron 20.0%
!!! ACATTTCATCAAACTTTTAA+AGG - chr1_1:9845661-9845680 Msa0006850:intron 20.0%
!!! TTCGTATTTTTTGTTTTAGA+TGG - chr1_1:9845744-9845763 Msa0006850:intron 20.0%
!! TATATAACTGACATACTAAT+AGG + chr1_1:9846250-9846269 None:intergenic 20.0%
!! TATTAGTATGTCAGTTATAT+AGG - chr1_1:9846249-9846268 Msa0006850:intron 20.0%
!!! ACTTTGATTAACAATTTTGA+TGG - chr1_1:9846403-9846422 Msa0006850:intron 20.0%
!! AGGATTGACAAATAATTTAT+TGG + chr1_1:9846626-9846645 None:intergenic 20.0%
!! AAGAAAAAAAAAAAATCAGC+AGG + chr1_1:9846827-9846846 None:intergenic 20.0%
!! AGTATGTTAAAACTTAACTT+CGG + chr1_1:9847041-9847060 None:intergenic 20.0%
!! CTATAAAATATCATAGAATG+AGG + chr1_1:9847069-9847088 None:intergenic 20.0%
!! TAATTAATACTAAGGTAGTA+TGG - chr1_1:9848234-9848253 Msa0006850:intron 20.0%
!! CAAAACCTAATTTTGAATTG+AGG + chr1_1:9841655-9841674 None:intergenic 25.0%
!!! ATTTTTACGAAAGTACGAAA+CGG - chr1_1:9841852-9841871 Msa0006850:three_prime_UTR 25.0%
!!! GCTATTTTTATAAGCTATGT+CGG - chr1_1:9842291-9842310 Msa0006850:CDS 25.0%
!!! TAAGTTTTGTGAGAATGTTT+TGG + chr1_1:9842382-9842401 None:intergenic 25.0%
!! AAAACAGTTTAAGACATAAC+GGG + chr1_1:9842443-9842462 None:intergenic 25.0%
!!! ATGTCTTAAACTGTTTTAAC+AGG - chr1_1:9842446-9842465 Msa0006850:intron 25.0%
!!! TAAGTTTTGTGAGACTATTT+GGG + chr1_1:9842477-9842496 None:intergenic 25.0%
!!! TTAAGTTTTGTGAGACTATT+TGG + chr1_1:9842478-9842497 None:intergenic 25.0%
! TGTAAATCAAGATTTCATTG+CGG + chr1_1:9842639-9842658 None:intergenic 25.0%
! ATTTGATTCAGCGTTTATTT+AGG - chr1_1:9842873-9842892 Msa0006850:CDS 25.0%
!! AATTTCCTGTTATCTTGTTT+CGG - chr1_1:9842910-9842929 Msa0006850:CDS 25.0%
! TTCACAAGTTATAACTACAA+TGG + chr1_1:9842942-9842961 None:intergenic 25.0%
! TTGACTAGTAAGAAAAACTA+TGG - chr1_1:9843165-9843184 Msa0006850:CDS 25.0%
! TCAAAAACCATTCTTTCATA+AGG + chr1_1:9843241-9843260 None:intergenic 25.0%
!! TTATGAAAGAATGGTTTTTG+AGG - chr1_1:9843240-9843259 Msa0006850:CDS 25.0%
!!! AATACCATTAGGTTGAATAT+TGG + chr1_1:9843300-9843319 None:intergenic 25.0%
! ATGCAAATCAAATGTATTAC+CGG + chr1_1:9843390-9843409 None:intergenic 25.0%
! ACATTTCAAAAAAAAAGGGA+AGG + chr1_1:9843580-9843599 None:intergenic 25.0%
! GTAAAAACATACCTTAACAA+TGG + chr1_1:9843698-9843717 None:intergenic 25.0%
! AATAATGCACACAAATAATC+TGG + chr1_1:9843950-9843969 None:intergenic 25.0%
! AATTTGAGTGTGTGTATTAA+TGG - chr1_1:9843972-9843991 Msa0006850:intron 25.0%
!!! ATTATTTTTCCACCTTTTGA+AGG - chr1_1:9844074-9844093 Msa0006850:intron 25.0%
! ATCAAATTGAAACCTTCAAA+AGG + chr1_1:9844089-9844108 None:intergenic 25.0%
!! ATATGCATAGTCAATTTTGA+AGG - chr1_1:9844112-9844131 Msa0006850:intron 25.0%
!!! AGCGATTTGATTTTCTAATT+TGG - chr1_1:9844260-9844279 Msa0006850:intron 25.0%
!!! GCGATTTGATTTTCTAATTT+GGG - chr1_1:9844261-9844280 Msa0006850:intron 25.0%
!!! TTCTAATTTGGGTTAGTTTT+TGG - chr1_1:9844272-9844291 Msa0006850:intron 25.0%
!! GAACTCTTTTTACATTACAT+TGG + chr1_1:9844457-9844476 None:intergenic 25.0%
!! AAATCCATGTAAGATGTTTT+TGG - chr1_1:9845041-9845060 Msa0006850:CDS 25.0%
!!! TTTTGAAACATACACTCAAA+TGG - chr1_1:9845214-9845233 Msa0006850:intron 25.0%
! TTGAAGAAAATTGAAGATGT+AGG - chr1_1:9845491-9845510 Msa0006850:intron 25.0%
! TTTATCATCACTCATATGAA+GGG + chr1_1:9845619-9845638 None:intergenic 25.0%
! ATTTATCATCACTCATATGA+AGG + chr1_1:9845620-9845639 None:intergenic 25.0%
!!! TTATTTATTTTCCCTCTTCA+AGG - chr1_1:9845701-9845720 Msa0006850:intron 25.0%
! ATACGAAGATTCAAATAAAC+AGG + chr1_1:9845731-9845750 None:intergenic 25.0%
! AAGAGTAACGATAATTCTAA+CGG - chr1_1:9846494-9846513 Msa0006850:intron 25.0%
! TACATATCAACAAAAAGTGA+AGG + chr1_1:9846592-9846611 None:intergenic 25.0%
!!! TTATATTTTAGGAATTGGCT+TGG + chr1_1:9846679-9846698 None:intergenic 25.0%
!!! CTAGCTTATATTTTAGGAAT+TGG + chr1_1:9846684-9846703 None:intergenic 25.0%
!!! CAACATCTAGCTTATATTTT+AGG + chr1_1:9846690-9846709 None:intergenic 25.0%
! AAATATAAGCTAGATGTTGT+TGG - chr1_1:9846691-9846710 Msa0006850:intron 25.0%
! AATATAAGCTAGATGTTGTT+GGG - chr1_1:9846692-9846711 Msa0006850:intron 25.0%
! ATTTACATGTAAAACGACAA+TGG + chr1_1:9846761-9846780 None:intergenic 25.0%
! TTTACATGTAAATGTAATCG+TGG - chr1_1:9846768-9846787 Msa0006850:intron 25.0%
!! TCTTGATTATACTTTGTTTG+TGG - chr1_1:9846872-9846891 Msa0006850:intron 25.0%
! CAATAGAAAGCAAGAAAAAA+GGG + chr1_1:9846901-9846920 None:intergenic 25.0%
! ACAAGTAAAATTTCATTTGC+TGG - chr1_1:9846989-9847008 Msa0006850:intron 25.0%
! TTTGAATAAAATACCAGATC+TGG + chr1_1:9847421-9847440 None:intergenic 25.0%
! ATCAAGTTTGAAAATAACCT+TGG + chr1_1:9848381-9848400 None:intergenic 25.0%
! ATGCTATCATTATTATTCAG+TGG + chr1_1:9848517-9848536 None:intergenic 25.0%
!!! TTATCTTTGCTTACTTTTCT+TGG + chr1_1:9848781-9848800 None:intergenic 25.0%
! AATTATCATGCTAACCATAA+AGG + chr1_1:9849237-9849256 None:intergenic 25.0%
!! CAATTTTCACACATCTATAT+GGG + chr1_1:9849270-9849289 None:intergenic 25.0%
!! ACAATTTTCACACATCTATA+TGG + chr1_1:9849271-9849290 None:intergenic 25.0%
!!! TTATTTTTGATGCTTTCAGA+TGG - chr1_1:9849358-9849377 Msa0006850:five_prime_UTR 25.0%
TCCTTCCTCAATTCAAAATT+AGG - chr1_1:9841647-9841666 Msa0006850:three_prime_UTR 30.0%
! ACCTAATTTTGAATTGAGGA+AGG + chr1_1:9841651-9841670 None:intergenic 30.0%
CACTCAATTGAAGATTATTG+TGG - chr1_1:9841829-9841848 Msa0006850:three_prime_UTR 30.0%
GATAACTGTTAGGTTATGTT+TGG - chr1_1:9841978-9841997 Msa0006850:three_prime_UTR 30.0%
!! GCTATTTTCATCAACTATCT+TGG - chr1_1:9842103-9842122 Msa0006850:CDS 30.0%
AATAAGGTGAAAACAGCTTA+TGG - chr1_1:9842138-9842157 Msa0006850:CDS 30.0%
GATAAGTTGTTTATCCAAAC+AGG + chr1_1:9842172-9842191 None:intergenic 30.0%
GTTTGGATAAACAACTTATC+TGG - chr1_1:9842172-9842191 Msa0006850:CDS 30.0%
CTTATGCTTATCATGATAAG+TGG - chr1_1:9842197-9842216 Msa0006850:CDS 30.0%
TCAAATAAGCCAATTCAAAC+AGG - chr1_1:9842417-9842436 Msa0006850:intron 30.0%
GTAAATCAAGATTTCATTGC+GGG + chr1_1:9842638-9842657 None:intergenic 30.0%
ATGAATCAGTTAGACATTTC+TGG + chr1_1:9842687-9842706 None:intergenic 30.0%
! AGAAATGTCTAACTGATTCA+TGG - chr1_1:9842686-9842705 Msa0006850:intron 30.0%
! TTCAGCGTTTATTTAGGATA+AGG - chr1_1:9842879-9842898 Msa0006850:CDS 30.0%
! GTAGTTATAACTTGTGAAGT+CGG - chr1_1:9842944-9842963 Msa0006850:CDS 30.0%
CTTTCCAATATTCAACCTAA+TGG - chr1_1:9843293-9843312 Msa0006850:CDS 30.0%
! GTTATTTGTTGATTAGGAAG+AGG + chr1_1:9843550-9843569 None:intergenic 30.0%
! AAAGACAGTAGTCTTACTAT+AGG + chr1_1:9843754-9843773 None:intergenic 30.0%
CAATGGAAACTGACAAAAAT+AGG + chr1_1:9843814-9843833 None:intergenic 30.0%
GTTTCCATTGTTTATTCTGT+AGG - chr1_1:9843824-9843843 Msa0006850:intron 30.0%
GTATCCTACAGAATAAACAA+TGG + chr1_1:9843831-9843850 None:intergenic 30.0%
TTGTTTATTCTGTAGGATAC+AGG - chr1_1:9843831-9843850 Msa0006850:intron 30.0%
TGTTTATTCTGTAGGATACA+GGG - chr1_1:9843832-9843851 Msa0006850:intron 30.0%
AAATTGAAACCTTCAAAAGG+TGG + chr1_1:9844086-9844105 None:intergenic 30.0%
! TGGTGATTTCTTTTACTAGT+CGG - chr1_1:9844173-9844192 Msa0006850:intron 30.0%
! ATTTCTTTTACTAGTCGGTT+AGG - chr1_1:9844178-9844197 Msa0006850:intron 30.0%
AATTAAAACCATGCCAACAT+TGG - chr1_1:9844328-9844347 Msa0006850:intron 30.0%
! TTTTTCCTACGTGTTTTGTA+GGG - chr1_1:9844610-9844629 Msa0006850:intron 30.0%
! TGCCATTTAGTTTAGTACTT+TGG - chr1_1:9844921-9844940 Msa0006850:CDS 30.0%
! GCCATTTAGTTTAGTACTTT+GGG - chr1_1:9844922-9844941 Msa0006850:CDS 30.0%
! TCCCAAAGTACTAAACTAAA+TGG + chr1_1:9844926-9844945 None:intergenic 30.0%
TATGCCAAAAACATCTTACA+TGG + chr1_1:9845048-9845067 None:intergenic 30.0%
ACATACACTCAAATGGAAAT+TGG - chr1_1:9845221-9845240 Msa0006850:intron 30.0%
AAAGAATAGTGAACAGAGTA+AGG + chr1_1:9845329-9845348 None:intergenic 30.0%
TCTGTTCACTATTCTTTCAT+TGG - chr1_1:9845332-9845351 Msa0006850:intron 30.0%
CTGTTCACTATTCTTTCATT+GGG - chr1_1:9845333-9845352 Msa0006850:intron 30.0%
AAGACTCACAAGTCAAAAAT+TGG - chr1_1:9845771-9845790 Msa0006850:intron 30.0%
AAGTCAAAAATTGGAAGGAA+TGG - chr1_1:9845780-9845799 Msa0006850:intron 30.0%
! GGAAAGCATAAAAAATCTTC+AGG - chr1_1:9845840-9845859 Msa0006850:intron 30.0%
AGGAAAGATAAACATAGACA+TGG - chr1_1:9846026-9846045 Msa0006850:intron 30.0%
AGAGATCAAAACGTAAATCA+AGG - chr1_1:9846096-9846115 Msa0006850:CDS 30.0%
TATATCATGTGCTCTCATAT+AGG - chr1_1:9846210-9846229 Msa0006850:intron 30.0%
TAGTATGTCAGTTATATAGG+TGG - chr1_1:9846252-9846271 Msa0006850:intron 30.0%
!! TTTTGTCTTGTTGAGAACAA+TGG + chr1_1:9846352-9846371 None:intergenic 30.0%
AAAGATCATTCTCAGATAGA+TGG - chr1_1:9846554-9846573 Msa0006850:intron 30.0%
ATATAAGCTAGATGTTGTTG+GGG - chr1_1:9846693-9846712 Msa0006850:intron 30.0%
ACGACAAATCATTATTTACC+TGG + chr1_1:9846732-9846751 None:intergenic 30.0%
TATAATCAAGAGAAGATGCA+AGG + chr1_1:9846863-9846882 None:intergenic 30.0%
CCAATAGAAAGCAAGAAAAA+AGG + chr1_1:9846902-9846921 None:intergenic 30.0%
!!! CCTTTTTTCTTGCTTTCTAT+TGG - chr1_1:9846899-9846918 Msa0006850:intron 30.0%
! ATCTTGTTTGCCTTAGAATT+GGG - chr1_1:9846943-9846962 Msa0006850:intron 30.0%
! GATTCATTTTCCCAATTCTA+AGG + chr1_1:9846956-9846975 None:intergenic 30.0%
ATGTTAAAACTTAACTTCGG+TGG + chr1_1:9847038-9847057 None:intergenic 30.0%
TCCACTGAATCATAAAAAGA+GGG - chr1_1:9847199-9847218 Msa0006850:intron 30.0%
GAAGAATTCCCAAAAGAAAA+TGG - chr1_1:9847245-9847264 Msa0006850:CDS 30.0%
ATGATAATCCAGGAAAATCT+AGG - chr1_1:9847342-9847361 Msa0006850:intron 30.0%
GTAAGCATAAGAAATAACAG+AGG + chr1_1:9847390-9847409 None:intergenic 30.0%
!! TTTATTCAAAGTTGATGAGC+AGG - chr1_1:9847431-9847450 Msa0006850:intron 30.0%
AAAGATACTCTTATGCTAGA+AGG - chr1_1:9848118-9848137 Msa0006850:intron 30.0%
ACATACTCTCATATTCTCAA+CGG + chr1_1:9848263-9848282 None:intergenic 30.0%
AAGTTTGAAAATAACCTTGG+TGG + chr1_1:9848378-9848397 None:intergenic 30.0%
AGGTGAAGATATTGTACTTA+TGG - chr1_1:9848432-9848451 Msa0006850:intron 30.0%
! CATGATTTTATTCATCGTTG+AGG - chr1_1:9848455-9848474 Msa0006850:intron 30.0%
TCATTATTATTCAGTGGCAT+GGG + chr1_1:9848511-9848530 None:intergenic 30.0%
ATCATTATTATTCAGTGGCA+TGG + chr1_1:9848512-9848531 None:intergenic 30.0%
TTATGTGTAAGCCTATATGT+AGG - chr1_1:9848575-9848594 Msa0006850:intron 30.0%
GAAAAGTAAGCAAAGATAAC+AGG - chr1_1:9848782-9848801 Msa0006850:intron 30.0%
ATTCTTCATAAACCAATGCT+AGG - chr1_1:9849002-9849021 Msa0006850:intron 30.0%
GATAAATCAATTCCTAGCAT+TGG + chr1_1:9849017-9849036 None:intergenic 30.0%
ATGGCATGTTGAAAGATAAT+AGG - chr1_1:9849053-9849072 Msa0006850:intron 30.0%
!! AGTAAGTATCGATATTTGCT+CGG - chr1_1:9849122-9849141 Msa0006850:intron 30.0%
! AAAAGCATGAGTTTAACTGA+TGG - chr1_1:9849198-9849217 Msa0006850:intron 30.0%
GAATTGAGAATCTACGCTTT+GGG + chr1_1:9841578-9841597 None:intergenic 35.0%
AGAATTGAGAATCTACGCTT+TGG + chr1_1:9841579-9841598 None:intergenic 35.0%
! TTCTCTTCTCTTCTCTTTTG+TGG - chr1_1:9841601-9841620 Msa0006850:three_prime_UTR 35.0%
! AACAGCTTATTTGCTGCTTA+TGG - chr1_1:9842004-9842023 Msa0006850:three_prime_UTR 35.0%
! TTGGAGCACTTACGAAAATA+AGG - chr1_1:9842122-9842141 Msa0006850:CDS 35.0%
TTATGGACAATGAACCTGTT+TGG - chr1_1:9842155-9842174 Msa0006850:CDS 35.0%
GCTTATTTGAGCTTATCTAC+AGG + chr1_1:9842407-9842426 None:intergenic 35.0%
TCAAATAAGCCAATCCAAAC+AGG - chr1_1:9842512-9842531 Msa0006850:intron 35.0%
TAAAACAATAAGGGCCTGTT+TGG + chr1_1:9842529-9842548 None:intergenic 35.0%
AATAAAGTACAGCTGCATGT+AGG + chr1_1:9842799-9842818 None:intergenic 35.0%
GTATAGTAGCAGATTGATTG+AGG - chr1_1:9842829-9842848 Msa0006850:CDS 35.0%
AGGTGTCAAACACTGAAATT+TGG - chr1_1:9842849-9842868 Msa0006850:CDS 35.0%
AAGTCGGCATGAATTTAAGT+AGG - chr1_1:9842960-9842979 Msa0006850:CDS 35.0%
GAGGAAAAACGAATACCATT+AGG + chr1_1:9843311-9843330 None:intergenic 35.0%
! CGAAAATTTTCAGCAGTCTT+TGG + chr1_1:9843356-9843375 None:intergenic 35.0%
ACATCATCACCATTGCTTAT+TGG - chr1_1:9843463-9843482 Msa0006850:CDS 35.0%
!! GTTGATGATCCAATAAGCAA+TGG + chr1_1:9843475-9843494 None:intergenic 35.0%
GATCATCAACTGAAAGTTCT+TGG - chr1_1:9843485-9843504 Msa0006850:intron 35.0%
! TGCAGTGATTTTCCAGTATT+AGG + chr1_1:9843637-9843656 None:intergenic 35.0%
TTCTTCCATCAGATCGTAAA+AGG - chr1_1:9843670-9843689 Msa0006850:CDS 35.0%
CAAATAATCTGGTCATCAAG+AGG + chr1_1:9843939-9843958 None:intergenic 35.0%
GAGTGTGTGTATTAATGGTT+TGG - chr1_1:9843977-9843996 Msa0006850:intron 35.0%
GGAGACTTTATCAATCGAAA+TGG - chr1_1:9844017-9844036 Msa0006850:intron 35.0%
GGAAACATGAAAATGGAACA+AGG + chr1_1:9844145-9844164 None:intergenic 35.0%
TGTGACAGGAAACATGAAAA+TGG + chr1_1:9844152-9844171 None:intergenic 35.0%
TTTCATGTTTCCTGTCACAA+TGG - chr1_1:9844153-9844172 Msa0006850:intron 35.0%
AAAGAAATCACCATTGTGAC+AGG + chr1_1:9844166-9844185 None:intergenic 35.0%
CTAAGAAAGTTCCATTTGCT+TGG - chr1_1:9844204-9844223 Msa0006850:intron 35.0%
!! AGATTGGTCTGTCATTTAGT+GGG - chr1_1:9844230-9844249 Msa0006850:intron 35.0%
ATGCAGATAAAAGCCAATGT+TGG + chr1_1:9844344-9844363 None:intergenic 35.0%
AACACGTAGGAAAAAGATAC+AGG + chr1_1:9844605-9844624 None:intergenic 35.0%
! CTTTTTCCTACGTGTTTTGT+AGG - chr1_1:9844609-9844628 Msa0006850:intron 35.0%
!! TTGAACTTTTTCTCCAGCTT+GGG - chr1_1:9844689-9844708 Msa0006850:intron 35.0%
GATAAACAGACCTATCAAGA+TGG + chr1_1:9844887-9844906 None:intergenic 35.0%
GTACTAAACTAAATGGCACT+AGG + chr1_1:9844919-9844938 None:intergenic 35.0%
! ATCAGTTTTCCTCATCCAAA+CGG + chr1_1:9844949-9844968 None:intergenic 35.0%
GTAAAAGCTAGAAACAGCTT+AGG - chr1_1:9845109-9845128 Msa0006850:CDS 35.0%
TTAAGTTCTCTGTTTGTCTG+AGG - chr1_1:9845180-9845199 Msa0006850:intron 35.0%
TAAGTTCTCTGTTTGTCTGA+GGG - chr1_1:9845181-9845200 Msa0006850:intron 35.0%
CAAGTAAAGCCTGTTAAACA+AGG + chr1_1:9845277-9845296 None:intergenic 35.0%
TCACTATTCTTTCATTGGGT+TGG - chr1_1:9845337-9845356 Msa0006850:intron 35.0%
TTGCTCATGTGTTCAGTTAT+GGG - chr1_1:9845413-9845432 Msa0006850:CDS 35.0%
!!! TTATTTTGACAGTTACGGCT+GGG + chr1_1:9845532-9845551 None:intergenic 35.0%
!!! ATTATTTTGACAGTTACGGC+TGG + chr1_1:9845533-9845552 None:intergenic 35.0%
TAATTGTGGTGAACACAATG+AGG - chr1_1:9845553-9845572 Msa0006850:intron 35.0%
AATTGTGGTGAACACAATGA+GGG - chr1_1:9845554-9845573 Msa0006850:intron 35.0%
AGAATTCCTTAGCCCATTTA+AGG - chr1_1:9845579-9845598 Msa0006850:intron 35.0%
GAACTCGGTATTCCTTAAAT+GGG + chr1_1:9845594-9845613 None:intergenic 35.0%
AGAACTCGGTATTCCTTAAA+TGG + chr1_1:9845595-9845614 None:intergenic 35.0%
AAACAGGTATTCCTTGAAGA+GGG + chr1_1:9845715-9845734 None:intergenic 35.0%
TAAACAGGTATTCCTTGAAG+AGG + chr1_1:9845716-9845735 None:intergenic 35.0%
CTCACAAGTCAAAAATTGGA+AGG - chr1_1:9845775-9845794 Msa0006850:intron 35.0%
AAGCAAATAGTCATGAAGTG+CGG - chr1_1:9845811-9845830 Msa0006850:intron 35.0%
AAAAATCTTCAGGAGACAGA+AGG - chr1_1:9845850-9845869 Msa0006850:intron 35.0%
ACTTTCAGAAGATTCCATGT+CGG + chr1_1:9845922-9845941 None:intergenic 35.0%
GATCAAAACGTAAATCAAGG+AGG - chr1_1:9846099-9846118 Msa0006850:CDS 35.0%
!! GACATTGAGATTTTGTTGTG+TGG - chr1_1:9846428-9846447 Msa0006850:intron 35.0%
AACGATAATTCTAACGGCAA+AGG - chr1_1:9846500-9846519 Msa0006850:intron 35.0%
!!! ATTTTAGGAATTGGCTTGGT+TGG + chr1_1:9846675-9846694 None:intergenic 35.0%
! TAGATGTTGTTGGGGTTTTT+GGG - chr1_1:9846701-9846720 Msa0006850:intron 35.0%
ATGTAAAACGACAATGGTCT+AGG + chr1_1:9846755-9846774 None:intergenic 35.0%
!! CAATTCTAAGGCAAACAAGA+TGG + chr1_1:9846944-9846963 None:intergenic 35.0%
! CATCTTGTTTGCCTTAGAAT+TGG - chr1_1:9846942-9846961 Msa0006850:intron 35.0%
GCTCACATGACAAACAAAAA+AGG + chr1_1:9847016-9847035 None:intergenic 35.0%
ATTGTTCAGCCTTTGTTCTT+CGG - chr1_1:9847097-9847116 Msa0006850:intron 35.0%
TAACTCTTTCTCCAAAACTG+AGG + chr1_1:9847177-9847196 None:intergenic 35.0%
! CTCTTTTTATGATTCAGTGG+AGG + chr1_1:9847200-9847219 None:intergenic 35.0%
CTCCACTGAATCATAAAAAG+AGG - chr1_1:9847198-9847217 Msa0006850:intron 35.0%
! TCCCTCTTTTTATGATTCAG+TGG + chr1_1:9847203-9847222 None:intergenic 35.0%
ACTGAATCATAAAAAGAGGG+AGG - chr1_1:9847202-9847221 Msa0006850:intron 35.0%
CTGAATCATAAAAAGAGGGA+GGG - chr1_1:9847203-9847222 Msa0006850:intron 35.0%
TGAATCATAAAAAGAGGGAG+GGG - chr1_1:9847204-9847223 Msa0006850:intron 35.0%
! AAAGTAGACCTAGATTTTCC+TGG + chr1_1:9847353-9847372 None:intergenic 35.0%
AATACCAGATCTGGAAGAAA+TGG + chr1_1:9847412-9847431 None:intergenic 35.0%
AATACTCATACTCTTGCTCA+CGG + chr1_1:9847482-9847501 None:intergenic 35.0%
! GAATGTGTGTTGTTCTCATA+GGG + chr1_1:9847705-9847724 None:intergenic 35.0%
! TGAATGTGTGTTGTTCTCAT+AGG + chr1_1:9847706-9847725 None:intergenic 35.0%
TAATGCTTCTCAAAGGAACT+CGG + chr1_1:9847936-9847955 None:intergenic 35.0%
TTCACCAAAACGTATCAGAA+GGG - chr1_1:9848080-9848099 Msa0006850:intron 35.0%
GCTACTTAATTTACCTGTCA+CGG + chr1_1:9848197-9848216 None:intergenic 35.0%
TCAGATATTCAGGATACAGA+AGG - chr1_1:9848307-9848326 Msa0006850:intron 35.0%
!! ATTCATCGTTGAGGCATTTT+TGG - chr1_1:9848464-9848483 Msa0006850:intron 35.0%
CATTATTATTCAGTGGCATG+GGG + chr1_1:9848510-9848529 None:intergenic 35.0%
TAAGCAAAGATAACAGGTCA+AGG - chr1_1:9848788-9848807 Msa0006850:intron 35.0%
!! TAAAGGTGAAGTACCGAATT+CGG - chr1_1:9848880-9848899 Msa0006850:intron 35.0%
! ATCCTCGTAGTAAGTTGAAA+TGG - chr1_1:9849034-9849053 Msa0006850:intron 35.0%
ACTACAAGACACTGATAACT+GGG + chr1_1:9849177-9849196 None:intergenic 35.0%
TACTACAAGACACTGATAAC+TGG + chr1_1:9849178-9849197 None:intergenic 35.0%
GAGTTTAACTGATGGAGATT+TGG - chr1_1:9849206-9849225 Msa0006850:intron 35.0%
TCATGCTAACCATAAAGGAT+AGG + chr1_1:9849232-9849251 None:intergenic 35.0%
TGTGTCTGGAAGTTTATGTA+TGG - chr1_1:9849323-9849342 Msa0006850:five_prime_UTR 35.0%
TCTGGAAGTTTATGTATGGA+TGG - chr1_1:9849327-9849346 Msa0006850:five_prime_UTR 35.0%
CTGGAAGTTTATGTATGGAT+GGG - chr1_1:9849328-9849347 Msa0006850:five_prime_UTR 35.0%
! TCTCTTCTCTTTTGTGGTTC+AGG - chr1_1:9841607-9841626 Msa0006850:three_prime_UTR 40.0%
AAAACCTAAAACCCTAGCTG+AGG + chr1_1:9841708-9841727 None:intergenic 40.0%
GGCATAAGCGCTTATGAATA+AGG - chr1_1:9842025-9842044 Msa0006850:three_prime_UTR 40.0%
ACTGAGAGAGAGAATTCATG+TGG - chr1_1:9842579-9842598 Msa0006850:CDS 40.0%
CTGAGAGAGAGAATTCATGT+GGG - chr1_1:9842580-9842599 Msa0006850:CDS 40.0%
TGAGAGAGAGAATTCATGTG+GGG - chr1_1:9842581-9842600 Msa0006850:CDS 40.0%
! TAACTGATTCATGGCCAGTT+AGG - chr1_1:9842695-9842714 Msa0006850:intron 40.0%
CCTTACCGAAACAAGATAAC+AGG + chr1_1:9842918-9842937 None:intergenic 40.0%
! CCTGTTATCTTGTTTCGGTA+AGG - chr1_1:9842915-9842934 Msa0006850:CDS 40.0%
!! TATTAGCTTGATAGTGCAGC+TGG - chr1_1:9843002-9843021 Msa0006850:CDS 40.0%
! AGCTGGATTGTTCAGTTTTG+TGG - chr1_1:9843019-9843038 Msa0006850:CDS 40.0%
GAAAAACCCCATGGTGTTTA+TGG - chr1_1:9843195-9843214 Msa0006850:CDS 40.0%
TTTATGGACGTGTCTGTAGA+CGG - chr1_1:9843211-9843230 Msa0006850:CDS 40.0%
AACATCGTAGAAAAGCTGAG+AGG + chr1_1:9843330-9843349 None:intergenic 40.0%
! AATTTTCGTGCACTGTGTAC+CGG - chr1_1:9843368-9843387 Msa0006850:CDS 40.0%
GATGATGTGTGGAAGGAAAA+AGG + chr1_1:9843451-9843470 None:intergenic 40.0%
! TAAGCAATGGTGATGATGTG+TGG + chr1_1:9843462-9843481 None:intergenic 40.0%
!! AATGTGTCATTTCCCCTTTC+AGG - chr1_1:9843595-9843614 Msa0006850:CDS 40.0%
TTTCCCCTTTCAGGAGAAAA+AGG - chr1_1:9843604-9843623 Msa0006850:CDS 40.0%
! ACTCCTTTTTCTCCTGAAAG+GGG + chr1_1:9843610-9843629 None:intergenic 40.0%
! GACTCCTTTTTCTCCTGAAA+GGG + chr1_1:9843611-9843630 None:intergenic 40.0%
! TGACTCCTTTTTCTCCTGAA+AGG + chr1_1:9843612-9843631 None:intergenic 40.0%
AAAGGAGTCAGTCCTAATAC+TGG - chr1_1:9843622-9843641 Msa0006850:CDS 40.0%
TGGAAAATCACTGCACTACA+AGG - chr1_1:9843642-9843661 Msa0006850:CDS 40.0%
GGAAAATCACTGCACTACAA+GGG - chr1_1:9843643-9843662 Msa0006850:CDS 40.0%
CGTAAAAGGCTCCATTGTTA+AGG - chr1_1:9843684-9843703 Msa0006850:CDS 40.0%
TCCATTTGCTTGGTACAGAT+TGG - chr1_1:9844214-9844233 Msa0006850:intron 40.0%
ACCAATCTGTACCAAGCAAA+TGG + chr1_1:9844218-9844237 None:intergenic 40.0%
!! CAGATTGGTCTGTCATTTAG+TGG - chr1_1:9844229-9844248 Msa0006850:intron 40.0%
!! GATTGGTCTGTCATTTAGTG+GGG - chr1_1:9844231-9844250 Msa0006850:intron 40.0%
GATAAAAGCCAATGTTGGCA+TGG + chr1_1:9844339-9844358 None:intergenic 40.0%
ACAAGCTAAAGAAGAAGAGC+AGG + chr1_1:9844380-9844399 None:intergenic 40.0%
TTTCATGAAACCTCATCGAC+AGG - chr1_1:9844521-9844540 Msa0006850:intron 40.0%
ATACAACACATGCTGCATTC+GGG + chr1_1:9844570-9844589 None:intergenic 40.0%
CATACAACACATGCTGCATT+CGG + chr1_1:9844571-9844590 None:intergenic 40.0%
GCAACTTAGCATTCTAACCT+GGG + chr1_1:9844665-9844684 None:intergenic 40.0%
AGCAACTTAGCATTCTAACC+TGG + chr1_1:9844666-9844685 None:intergenic 40.0%
!! CTTGAACTTTTTCTCCAGCT+TGG - chr1_1:9844688-9844707 Msa0006850:intron 40.0%
TAACTCAAAAGAACCCAAGC+TGG + chr1_1:9844705-9844724 None:intergenic 40.0%
! CCTCTGAAAAAATAGGTCAG+AGG + chr1_1:9844761-9844780 None:intergenic 40.0%
!!! CCTCTGACCTATTTTTTCAG+AGG - chr1_1:9844758-9844777 Msa0006850:intron 40.0%
! GGAGACTCCTCTGAAAAAAT+AGG + chr1_1:9844768-9844787 None:intergenic 40.0%
!!! TTTTTTCAGAGGAGTCTCCT+AGG - chr1_1:9844769-9844788 Msa0006850:intron 40.0%
AAGCTGATCACCATCTTGAT+AGG - chr1_1:9844874-9844893 Msa0006850:CDS 40.0%
!! TTTAGTACTTTGGGACCGTT+TGG - chr1_1:9844931-9844950 Msa0006850:CDS 40.0%
AAAGCTAGAAACAGCTTAGG+AGG - chr1_1:9845112-9845131 Msa0006850:CDS 40.0%
!! TGCAATGTGCCTTGTTTAAC+AGG - chr1_1:9845265-9845284 Msa0006850:intron 40.0%
CTTGCTCATGTGTTCAGTTA+TGG - chr1_1:9845412-9845431 Msa0006850:CDS 40.0%
TGCTCATGTGTTCAGTTATG+GGG - chr1_1:9845414-9845433 Msa0006850:CDS 40.0%
!! TTTTTGGCAAGCTGTTGCAA+GGG - chr1_1:9845459-9845478 Msa0006850:CDS 40.0%
GAAGATGTAGGCAATGAAGA+AGG - chr1_1:9845503-9845522 Msa0006850:intron 40.0%
!! GGTATTCCTTAAATGGGCTA+AGG + chr1_1:9845588-9845607 None:intergenic 40.0%
CTCATATGAAGGGAAGAACT+CGG + chr1_1:9845609-9845628 None:intergenic 40.0%
TGAACTTGTGTAAGATGACG+AGG + chr1_1:9845970-9845989 None:intergenic 40.0%
CAAGTTCATCTAGTGATGAC+AGG - chr1_1:9845982-9846001 Msa0006850:intron 40.0%
GGAGGAAAAGAAAGAGATCT+AGG - chr1_1:9846006-9846025 Msa0006850:intron 40.0%
GAGATAAACGTCGAGAAAAG+AGG - chr1_1:9846057-9846076 Msa0006850:CDS 40.0%
ATGTGCTCTCATATAGGTTG+TGG - chr1_1:9846216-9846235 Msa0006850:intron 40.0%
TGCAGTTAAACTCGTATGGT+AGG + chr1_1:9846328-9846347 None:intergenic 40.0%
TGGATGCAGTTAAACTCGTA+TGG + chr1_1:9846332-9846351 None:intergenic 40.0%
!! AGATTTTGTTGTGTGGTGTC+AGG - chr1_1:9846435-9846454 Msa0006850:intron 40.0%
!! GATTTTGTTGTGTGGTGTCA+GGG - chr1_1:9846436-9846455 Msa0006850:intron 40.0%
! CTAGATGTTGTTGGGGTTTT+TGG - chr1_1:9846700-9846719 Msa0006850:intron 40.0%
! AGATGTTGTTGGGGTTTTTG+GGG - chr1_1:9846702-9846721 Msa0006850:intron 40.0%
ATGTAAATGTAATCGTGGCC+TGG - chr1_1:9846773-9846792 Msa0006850:intron 40.0%
TAATCGTGGCCTGGAAAATA+AGG - chr1_1:9846782-9846801 Msa0006850:intron 40.0%
!!! CCTAGATTGCCTTATTTTCC+AGG + chr1_1:9846794-9846813 None:intergenic 40.0%
CCTGGAAAATAAGGCAATCT+AGG - chr1_1:9846791-9846810 Msa0006850:intron 40.0%
! CTTTCTATTGGCTGTTAGCT+AGG - chr1_1:9846911-9846930 Msa0006850:intron 40.0%
GAATCATAAAAAGAGGGAGG+GGG - chr1_1:9847205-9847224 Msa0006850:intron 40.0%
ACTTCTGTCAGGTCTATAGT+TGG + chr1_1:9847297-9847316 None:intergenic 40.0%
! TAACAGAGGTGTGACAAGAT+TGG + chr1_1:9847376-9847395 None:intergenic 40.0%
CTTACCATTTCTTCCAGATC+TGG - chr1_1:9847405-9847424 Msa0006850:intron 40.0%
GTCCTGTTAGAAGAATAAGC+AGG - chr1_1:9847614-9847633 Msa0006850:intron 40.0%
CTCCTGCTTATTCTTCTAAC+AGG + chr1_1:9847619-9847638 None:intergenic 40.0%
TTGCTAAGACTTCTACGATC+GGG + chr1_1:9847760-9847779 None:intergenic 40.0%
CTTGCTAAGACTTCTACGAT+CGG + chr1_1:9847761-9847780 None:intergenic 40.0%
TTTGAGAAACAGATCTGGCA+GGG + chr1_1:9847786-9847805 None:intergenic 40.0%
ATACTCTAGCAGAACTCCTA+CGG + chr1_1:9847810-9847829 None:intergenic 40.0%
CTCTTTCTTGACACTCTTAC+AGG + chr1_1:9847859-9847878 None:intergenic 40.0%
! TGTCAAGAAAGAGCATAAGC+AGG - chr1_1:9847866-9847885 Msa0006850:intron 40.0%
!! ATACGTTTTGGTGAAGCATC+GGG + chr1_1:9848075-9848094 None:intergenic 40.0%
!! GATACGTTTTGGTGAAGCAT+CGG + chr1_1:9848076-9848095 None:intergenic 40.0%
CTTCACCAAAACGTATCAGA+AGG - chr1_1:9848079-9848098 Msa0006850:intron 40.0%
TCACCAAAACGTATCAGAAG+GGG - chr1_1:9848081-9848100 Msa0006850:intron 40.0%
GGTCATTCCTTCCATTATAG+CGG + chr1_1:9848176-9848195 None:intergenic 40.0%
CAGGTAAATTAAGTAGCACG+TGG - chr1_1:9848200-9848219 Msa0006850:intron 40.0%
CTTTCTGCTCTCAGATATTC+AGG - chr1_1:9848297-9848316 Msa0006850:intron 40.0%
TGGGGATTTGAATACTAGGT+AGG + chr1_1:9848492-9848511 None:intergenic 40.0%
CAGTATGCAGTCTAAACAAC+AGG + chr1_1:9848544-9848563 None:intergenic 40.0%
GTAAGCCTATATGTAGGTAC+CGG - chr1_1:9848581-9848600 Msa0006850:intron 40.0%
AACCATTTCCATAAGAGACC+AGG + chr1_1:9848846-9848865 None:intergenic 40.0%
GTTCTCCTGATTCAAGCTAA+AGG - chr1_1:9848863-9848882 Msa0006850:intron 40.0%
!! CTTCACCTTTAGCTTGAATC+AGG + chr1_1:9848871-9848890 None:intergenic 40.0%
AAACCTCACCTTAAATGAGC+TGG - chr1_1:9848914-9848933 Msa0006850:intron 40.0%
CAAAGCTTCCAGCTCATTTA+AGG + chr1_1:9848925-9848944 None:intergenic 40.0%
AGTAACTAATTCCAGCAAGC+AGG + chr1_1:9848975-9848994 None:intergenic 40.0%
! TGCCATTTCAACTTACTACG+AGG + chr1_1:9849039-9849058 None:intergenic 40.0%
TGATAACTGGGGATATGGAT+GGG + chr1_1:9849165-9849184 None:intergenic 40.0%
CTACAAGACACTGATAACTG+GGG + chr1_1:9849176-9849195 None:intergenic 40.0%
GAGATTTGGCCTATCCTTTA+TGG - chr1_1:9849220-9849239 Msa0006850:intron 40.0%
CACACATCTATATGGGTCAT+AGG + chr1_1:9849263-9849282 None:intergenic 40.0%
!! GTATTTTAGAAGCGTGAGGT+TGG + chr1_1:9849297-9849316 None:intergenic 40.0%
!! AACGGTATTTTAGAAGCGTG+AGG + chr1_1:9849301-9849320 None:intergenic 40.0%
TAAAATACCGTTCGTGTGTC+TGG - chr1_1:9849309-9849328 Msa0006850:intron 40.0%
TAAACTTCCAGACACACGAA+CGG + chr1_1:9849319-9849338 None:intergenic 40.0%
!!! AGGTTTTGTCGTTTTCCGCA+CGG - chr1_1:9841667-9841686 Msa0006850:three_prime_UTR 45.0%
TTGCGTTTCATCCTCAGCTA+GGG - chr1_1:9841694-9841713 Msa0006850:three_prime_UTR 45.0%
! TCATCCTCAGCTAGGGTTTT+AGG - chr1_1:9841701-9841720 Msa0006850:three_prime_UTR 45.0%
TTCACTCGATTTCGCTGATC+TGG - chr1_1:9841796-9841815 Msa0006850:three_prime_UTR 45.0%
!! CATAACGGGCCTGTTTGAAT+TGG + chr1_1:9842429-9842448 None:intergenic 45.0%
CAATAAGGGCCTGTTTGGAT+TGG + chr1_1:9842524-9842543 None:intergenic 45.0%
TTCATGGCCAGTTAGGTACA+AGG - chr1_1:9842702-9842721 Msa0006850:intron 45.0%
! CTAACAGCCTTGTACCTAAC+TGG + chr1_1:9842712-9842731 None:intergenic 45.0%
GTTAGGTACAAGGCTGTTAG+AGG - chr1_1:9842712-9842731 Msa0006850:intron 45.0%
GGCAAAGAAGAAAAACCCCA+TGG - chr1_1:9843186-9843205 Msa0006850:CDS 45.0%
ACACGTCCATAAACACCATG+GGG + chr1_1:9843204-9843223 None:intergenic 45.0%
GACACGTCCATAAACACCAT+GGG + chr1_1:9843205-9843224 None:intergenic 45.0%
AGACACGTCCATAAACACCA+TGG + chr1_1:9843206-9843225 None:intergenic 45.0%
TTATGGACGTGTCTGTAGAC+GGG - chr1_1:9843212-9843231 Msa0006850:CDS 45.0%
CGGGGATCCTTATGAAAGAA+TGG - chr1_1:9843231-9843250 Msa0006850:CDS 45.0%
! CAATGGTGATGATGTGTGGA+AGG + chr1_1:9843458-9843477 None:intergenic 45.0%
! TGGAGCCTTTTACGATCTGA+TGG + chr1_1:9843678-9843697 None:intergenic 45.0%
GGTTGAAAATGGCTTAGCAG+TGG - chr1_1:9843786-9843805 Msa0006850:intron 45.0%
!!! TGGTTTGGTTTGCCTTTTGC+AGG - chr1_1:9843992-9844011 Msa0006850:intron 45.0%
!!! GGTTTGGTTTGCCTTTTGCA+GGG - chr1_1:9843993-9844012 Msa0006850:intron 45.0%
TAAAGTCTCCACCCTGCAAA+AGG + chr1_1:9844007-9844026 None:intergenic 45.0%
ATATGTGATGCCTGTCGATG+AGG + chr1_1:9844534-9844553 None:intergenic 45.0%
CATTCTAACCTGGGAACTTG+GGG + chr1_1:9844656-9844675 None:intergenic 45.0%
GCATTCTAACCTGGGAACTT+GGG + chr1_1:9844657-9844676 None:intergenic 45.0%
AGCATTCTAACCTGGGAACT+TGG + chr1_1:9844658-9844677 None:intergenic 45.0%
GGAGAATCATGCTTTAGCCT+AGG + chr1_1:9844789-9844808 None:intergenic 45.0%
AGGCTAAAGCATGATTCTCC+AGG - chr1_1:9844789-9844808 Msa0006850:intron 45.0%
TTCTCCAGGCCTTCTATCTA+TGG - chr1_1:9844803-9844822 Msa0006850:intron 45.0%
CAGCAATCGCCATAGATAGA+AGG + chr1_1:9844815-9844834 None:intergenic 45.0%
ATTGCTGATCGTGACACTCT+TGG - chr1_1:9844828-9844847 Msa0006850:CDS 45.0%
AAGGCACATTGCATCAAGTG+TGG + chr1_1:9845258-9845277 None:intergenic 45.0%
GTGAACAGAGTAAGGTCATC+TGG + chr1_1:9845321-9845340 None:intergenic 45.0%
!! CAGTTATGGGGTCATTTTGC+AGG - chr1_1:9845426-9845445 Msa0006850:CDS 45.0%
!! GTCATTTTGCAGGAAGCATG+TGG - chr1_1:9845436-9845455 Msa0006850:CDS 45.0%
!! TGCAGGAAGCATGTGGTTTT+TGG - chr1_1:9845443-9845462 Msa0006850:CDS 45.0%
!!! GTTTTTGGCAAGCTGTTGCA+AGG - chr1_1:9845458-9845477 Msa0006850:CDS 45.0%
TAGTCATGAAGTGCGGAGAA+AGG - chr1_1:9845818-9845837 Msa0006850:intron 45.0%
AGTCATGAAGTGCGGAGAAA+GGG - chr1_1:9845819-9845838 Msa0006850:intron 45.0%
TAGTTCCTCAGATTCCGACA+TGG - chr1_1:9845905-9845924 Msa0006850:intron 45.0%
AGATTCCATGTCGGAATCTG+AGG + chr1_1:9845913-9845932 None:intergenic 45.0%
GTTCATCTAGTGATGACAGG+CGG - chr1_1:9845985-9846004 Msa0006850:intron 45.0%
!! GATGTTGTTGGGGTTTTTGG+GGG - chr1_1:9846703-9846722 Msa0006850:intron 45.0%
!! ATGTTGTTGGGGTTTTTGGG+GGG - chr1_1:9846704-9846723 Msa0006850:intron 45.0%
CACATGCTACCGAAGAACAA+AGG + chr1_1:9847109-9847128 None:intergenic 45.0%
! AGTCCAGTCATCCTCAGTTT+TGG - chr1_1:9847163-9847182 Msa0006850:intron 45.0%
TCTCCAAAACTGAGGATGAC+TGG + chr1_1:9847169-9847188 None:intergenic 45.0%
! GCTGCGCTCCATTTTCTTTT+GGG + chr1_1:9847256-9847275 None:intergenic 45.0%
GACCTGACAGAAGTGAAGAA+AGG - chr1_1:9847303-9847322 Msa0006850:CDS 45.0%
TGCCTTTCTTCACTTCTGTC+AGG + chr1_1:9847308-9847327 None:intergenic 45.0%
!! GACGTGATGGATGATAATCC+AGG - chr1_1:9847332-9847351 Msa0006850:intron 45.0%
TCCTCTTTGGACTAATGCTC+GGG + chr1_1:9847528-9847547 None:intergenic 45.0%
CTCCTCTTTGGACTAATGCT+CGG + chr1_1:9847529-9847548 None:intergenic 45.0%
CTTCTGCTAAACCTCCTCTT+TGG + chr1_1:9847541-9847560 None:intergenic 45.0%
AGGTTTAGCAGAAGTCCAAG+TGG - chr1_1:9847547-9847566 Msa0006850:intron 45.0%
! CGAGGACTTTTACTACCACT+TGG + chr1_1:9847565-9847584 None:intergenic 45.0%
! CTTTGAGAAACAGATCTGGC+AGG + chr1_1:9847787-9847806 None:intergenic 45.0%
!! ACGGCTTTGAGAAACAGATC+TGG + chr1_1:9847791-9847810 None:intergenic 45.0%
! GATCTGTTTCTCAAAGCCGT+AGG - chr1_1:9847791-9847810 Msa0006850:intron 45.0%
CATCACGAAGAACAGTCAGT+AGG - chr1_1:9847830-9847849 Msa0006850:intron 45.0%
CTTCTGGCAGATGATCTAAC+TGG + chr1_1:9847895-9847914 None:intergenic 45.0%
CTTCGGCTAATGCTTCTCAA+AGG + chr1_1:9847943-9847962 None:intergenic 45.0%
! CTTCCCCTTCTGATACGTTT+TGG + chr1_1:9848087-9848106 None:intergenic 45.0%
AAACGTATCAGAAGGGGAAG+AGG - chr1_1:9848087-9848106 Msa0006850:intron 45.0%
!! TGAGGTACCGCTATAATGGA+AGG - chr1_1:9848166-9848185 Msa0006850:intron 45.0%
GGCATGGGGATTTGAATACT+AGG + chr1_1:9848496-9848515 None:intergenic 45.0%
CTACTCCGGTACCTACATAT+AGG + chr1_1:9848589-9848608 None:intergenic 45.0%
!! CTATATGTAGGTACCGGAGT+AGG - chr1_1:9848587-9848606 Msa0006850:intron 45.0%
TAGTGATTCCACAGAAGACC+TGG + chr1_1:9848755-9848774 None:intergenic 45.0%
! TCTCCTTCTAGAAGCTCAGA+CGG - chr1_1:9848811-9848830 Msa0006850:intron 45.0%
TTTCCGTCTGAGCTTCTAGA+AGG + chr1_1:9848817-9848836 None:intergenic 45.0%
AGAAGCTCAGACGGAAAGAA+AGG - chr1_1:9848820-9848839 Msa0006850:intron 45.0%
AAGAAAGGCCTGGTCTCTTA+TGG - chr1_1:9848835-9848854 Msa0006850:intron 45.0%
TACCGAATTCGGACCTTTCA+GGG - chr1_1:9848891-9848910 Msa0006850:intron 45.0%
TTCCCTGAAAGGTCCGAATT+CGG + chr1_1:9848896-9848915 None:intergenic 45.0%
TAAGGTGAGGTTTCCCTGAA+AGG + chr1_1:9848907-9848926 None:intergenic 45.0%
! CTTCCAGCTCATTTAAGGTG+AGG + chr1_1:9848920-9848939 None:intergenic 45.0%
ATACTGCTTTACCTGCTTGC+TGG - chr1_1:9848961-9848980 Msa0006850:intron 45.0%
GATAACTGGGGATATGGATG+GGG + chr1_1:9849164-9849183 None:intergenic 45.0%
CTGATAACTGGGGATATGGA+TGG + chr1_1:9849166-9849185 None:intergenic 45.0%
GACACTGATAACTGGGGATA+TGG + chr1_1:9849170-9849189 None:intergenic 45.0%
!! ATGAAACGCAAGGTACCGTG+CGG + chr1_1:9841685-9841704 None:intergenic 50.0%
CTAGCTGAGGATGAAACGCA+AGG + chr1_1:9841695-9841714 None:intergenic 50.0%
CTTGCGTTTCATCCTCAGCT+AGG - chr1_1:9841693-9841712 Msa0006850:three_prime_UTR 50.0%
TATGGACGTGTCTGTAGACG+GGG - chr1_1:9843213-9843232 Msa0006850:CDS 50.0%
TCTGTAGGATACAGGGCTGA+TGG - chr1_1:9843839-9843858 Msa0006850:intron 50.0%
!!! TTGGTTTGCCTTTTGCAGGG+TGG - chr1_1:9843996-9844015 Msa0006850:intron 50.0%
CCAGTCCCTACAAAACACGT+AGG + chr1_1:9844618-9844637 None:intergenic 50.0%
! CCTACGTGTTTTGTAGGGAC+TGG - chr1_1:9844615-9844634 Msa0006850:intron 50.0%
! ACGTGTTTTGTAGGGACTGG+TGG - chr1_1:9844618-9844637 Msa0006850:intron 50.0%
AGCATATACCCCAAGTTCCC+AGG - chr1_1:9844645-9844664 Msa0006850:intron 50.0%
ATCGCCATAGATAGAAGGCC+TGG + chr1_1:9844810-9844829 None:intergenic 50.0%
!! ACTTTGGGACCGTTTGGATG+AGG - chr1_1:9844937-9844956 Msa0006850:CDS 50.0%
AACGTCGAGAAAAGAGGCGA+AGG - chr1_1:9846063-9846082 Msa0006850:CDS 50.0%
! TTGTGTGGTGTCAGGGAATC+AGG - chr1_1:9846443-9846462 Msa0006850:intron 50.0%
TCATAAAAAGAGGGAGGGGG+TGG - chr1_1:9847208-9847227 Msa0006850:intron 50.0%
CATAAAAAGAGGGAGGGGGT+GGG - chr1_1:9847209-9847228 Msa0006850:intron 50.0%
! GGCTGCGCTCCATTTTCTTT+TGG + chr1_1:9847257-9847276 None:intergenic 50.0%
AGAAAGGCAGCATGACGTGA+TGG - chr1_1:9847319-9847338 Msa0006850:intron 50.0%
! CTCTTGCTCACGGTTTGCTT+AGG + chr1_1:9847472-9847491 None:intergenic 50.0%
! GGGCTTTTGCACACACACTT+GGG + chr1_1:9847508-9847527 None:intergenic 50.0%
CGAGCATTAGTCCAAAGAGG+AGG - chr1_1:9847527-9847546 Msa0006850:intron 50.0%
AAAGTCCTCGTGCTCTATCG+CGG - chr1_1:9847575-9847594 Msa0006850:CDS 50.0%
TACGATCGGGACTTCTCACA+GGG + chr1_1:9847747-9847766 None:intergenic 50.0%
AGAAGTCTCAGCAGGAGTTC+CGG - chr1_1:9847910-9847929 Msa0006850:intron 50.0%
TTGCCACTCTGACAGGACTT+CGG + chr1_1:9847960-9847979 None:intergenic 50.0%
TACGACTCCTGGAATAGCTG+CGG + chr1_1:9847996-9848015 None:intergenic 50.0%
! GAAGGTATAGAACCCCCTCT+CGG - chr1_1:9848136-9848155 Msa0006850:intron 50.0%
CCATTATAGCGGTACCTCAC+AGG + chr1_1:9848165-9848184 None:intergenic 50.0%
!! CCTGTGAGGTACCGCTATAA+TGG - chr1_1:9848162-9848181 Msa0006850:intron 50.0%
ATGGAAGGAATGACCGTGAC+AGG - chr1_1:9848181-9848200 Msa0006850:intron 50.0%
!! GATACAGAAGGTACTCCCCT+AGG - chr1_1:9848319-9848338 Msa0006850:intron 50.0%
! GGTGGGCTTCGTGATATAGA+CGG + chr1_1:9848625-9848644 None:intergenic 50.0%
CTATACCTTCGTGCTCGGTA+AGG + chr1_1:9848646-9848665 None:intergenic 50.0%
TTGGGCTATACCTTCGTGCT+CGG + chr1_1:9848651-9848670 None:intergenic 50.0%
TATTCACACGAGGAGGTGAG+CGG + chr1_1:9848693-9848712 None:intergenic 50.0%
ACAGAAGACCTGGATCGAGA+TGG + chr1_1:9848745-9848764 None:intergenic 50.0%
ATCTCGATCCAGGTCTTCTG+TGG - chr1_1:9848744-9848763 Msa0006850:intron 50.0%
GGCCTGGTCTCTTATGGAAA+TGG - chr1_1:9848841-9848860 Msa0006850:intron 50.0%
GTACCGAATTCGGACCTTTC+AGG - chr1_1:9848890-9848909 Msa0006850:intron 50.0%
TCGATATTTGCTCGGACGTG+TGG - chr1_1:9849130-9849149 Msa0006850:intron 50.0%
CGATATTTGCTCGGACGTGT+GGG - chr1_1:9849131-9849150 Msa0006850:intron 50.0%
CATCTAGTGATGACAGGCGG+AGG - chr1_1:9845988-9846007 Msa0006850:intron 55.0%
GAGGATGACTGGACTTCAGC+TGG + chr1_1:9847158-9847177 None:intergenic 55.0%
AATGGAGCGCAGCCTAGCAA+CGG - chr1_1:9847263-9847282 Msa0006850:CDS 55.0%
!! TTGGCCTTGATGCCGTTGCT+AGG + chr1_1:9847278-9847297 None:intergenic 55.0%
! CGGGCTTTTGCACACACACT+TGG + chr1_1:9847509-9847528 None:intergenic 55.0%
GCCCGAGCATTAGTCCAAAG+AGG - chr1_1:9847524-9847543 Msa0006850:intron 55.0%
TATCGCGGAGGAGTTTGAGC+AGG - chr1_1:9847590-9847609 Msa0006850:intron 55.0%
CTACGATCGGGACTTCTCAC+AGG + chr1_1:9847748-9847767 None:intergenic 55.0%
CATCTGCCAGAAGTCTCAGC+AGG - chr1_1:9847902-9847921 Msa0006850:intron 55.0%
GGAACTCCTGCTGAGACTTC+TGG + chr1_1:9847911-9847930 None:intergenic 55.0%
GCTTCTCAAAGGAACTCGGC+CGG + chr1_1:9847932-9847951 None:intergenic 55.0%
TAGCCGAAGTCCTGTCAGAG+TGG - chr1_1:9847954-9847973 Msa0006850:intron 55.0%
GCAATCACCGCAGCTATTCC+AGG - chr1_1:9847986-9848005 Msa0006850:intron 55.0%
GAGTCGTAGCCCTGTTCGTA+GGG - chr1_1:9848008-9848027 Msa0006850:intron 55.0%
GTGTCCTTGCCCTACGAACA+GGG + chr1_1:9848020-9848039 None:intergenic 55.0%
TACCTCACAGGAGACCGAGA+GGG + chr1_1:9848153-9848172 None:intergenic 55.0%
! GGTACTCCCCTAGGCGTTTT+AGG - chr1_1:9848328-9848347 Msa0006850:intron 55.0%
TGGGCTCCTAAAACGCCTAG+GGG + chr1_1:9848337-9848356 None:intergenic 55.0%
GTGGGCTCCTAAAACGCCTA+GGG + chr1_1:9848338-9848357 None:intergenic 55.0%
CTTGGTGGAGTTCTTCTCCG+TGG + chr1_1:9848363-9848382 None:intergenic 55.0%
CACGGAGAAGAACTCCACCA+AGG - chr1_1:9848361-9848380 Msa0006850:intron 55.0%
GTGTCCTGCTTCTCCTACTC+CGG + chr1_1:9848603-9848622 None:intergenic 55.0%
ACCTTCGTGCTCGGTAAGGT+GGG + chr1_1:9848642-9848661 None:intergenic 55.0%
TACCTTCGTGCTCGGTAAGG+TGG + chr1_1:9848643-9848662 None:intergenic 55.0%
! TGCGAATTGGGCTAGGGCTT+GGG + chr1_1:9848669-9848688 None:intergenic 55.0%
! TTGCGAATTGGGCTAGGGCT+TGG + chr1_1:9848670-9848689 None:intergenic 55.0%
AGCGGTTGCGAATTGGGCTA+GGG + chr1_1:9848675-9848694 None:intergenic 55.0%
GAGGTGAGCGGTTGCGAATT+GGG + chr1_1:9848681-9848700 None:intergenic 55.0%
GCTCACCTCCTCGTGTGAAT+AGG - chr1_1:9848692-9848711 Msa0006850:intron 55.0%
! TCGAGATGGACTCCTGCTGA+GGG + chr1_1:9848731-9848750 None:intergenic 55.0%
! ATCGAGATGGACTCCTGCTG+AGG + chr1_1:9848732-9848751 None:intergenic 55.0%
CTCAGACGGAAAGAAAGGCC+TGG - chr1_1:9848825-9848844 Msa0006850:intron 55.0%
!! TGGGGTTTTTGGGGGGTTCC+AGG - chr1_1:9846711-9846730 Msa0006850:intron 60.0%
GCAGCCTAGCAACGGCATCA+AGG - chr1_1:9847271-9847290 Msa0006850:CDS 60.0%
TCAGCAGAAGCCCCGTGAGA+GGG - chr1_1:9847653-9847672 Msa0006850:intron 60.0%
TCTCCCCTTCCTCCCTCTCA+CGG + chr1_1:9847668-9847687 None:intergenic 60.0%
CCTCTGCTTGCCACTCTGAC+AGG + chr1_1:9847967-9847986 None:intergenic 60.0%
CCTGTCAGAGTGGCAAGCAG+AGG - chr1_1:9847964-9847983 Msa0006850:intron 60.0%
ACGAACAGGGCTACGACTCC+TGG + chr1_1:9848007-9848026 None:intergenic 60.0%
GGAGTCGTAGCCCTGTTCGT+AGG - chr1_1:9848007-9848026 Msa0006850:intron 60.0%
GTAGCCCTGTTCGTAGGGCA+AGG - chr1_1:9848013-9848032 Msa0006850:intron 60.0%
GGTGTCCTTGCCCTACGAAC+AGG + chr1_1:9848021-9848040 None:intergenic 60.0%
GTAGGGCAAGGACACCTCGT+GGG - chr1_1:9848025-9848044 Msa0006850:intron 60.0%
TTCGACAGACTCCTCCCACG+AGG + chr1_1:9848042-9848061 None:intergenic 60.0%
ACCTCACAGGAGACCGAGAG+GGG + chr1_1:9848152-9848171 None:intergenic 60.0%
GTACCTCACAGGAGACCGAG+AGG + chr1_1:9848154-9848173 None:intergenic 60.0%
! GGTGGGCTCCTAAAACGCCT+AGG + chr1_1:9848339-9848358 None:intergenic 60.0%
!!! GTTTTAGGAGCCCACCGCCA+CGG - chr1_1:9848343-9848362 Msa0006850:intron 60.0%
GAGTTCTTCTCCGTGGCGGT+GGG + chr1_1:9848356-9848375 None:intergenic 60.0%
GGTGGAGTTCTTCTCCGTGG+CGG + chr1_1:9848360-9848379 None:intergenic 60.0%
! GGTACCGGAGTAGGAGAAGC+AGG - chr1_1:9848596-9848615 Msa0006850:intron 60.0%
GAGCGGTTGCGAATTGGGCT+AGG + chr1_1:9848676-9848695 None:intergenic 60.0%
GGAGGTGAGCGGTTGCGAAT+TGG + chr1_1:9848682-9848701 None:intergenic 60.0%
GCACGCCTATTCACACGAGG+AGG + chr1_1:9848700-9848719 None:intergenic 60.0%
GACGCACGCCTATTCACACG+AGG + chr1_1:9848703-9848722 None:intergenic 60.0%
GTGCGTCATCATCCCTCAGC+AGG - chr1_1:9848716-9848735 Msa0006850:intron 60.0%
GCAGGAGTCCATCTCGATCC+AGG - chr1_1:9848734-9848753 Msa0006850:intron 60.0%
GTCCTCGTGCTCTATCGCGG+AGG - chr1_1:9847578-9847597 Msa0006850:CDS 65.0%
CTCCTCCGCGATAGAGCACG+AGG + chr1_1:9847583-9847602 None:intergenic 65.0%
GTCAGCAGAAGCCCCGTGAG+AGG - chr1_1:9847652-9847671 Msa0006850:intron 65.0%
AAGCCCCGTGAGAGGGAGGA+AGG - chr1_1:9847660-9847679 Msa0006850:intron 65.0%
AGCCCCGTGAGAGGGAGGAA+GGG - chr1_1:9847661-9847680 Msa0006850:intron 65.0%
TCCCCTTCCTCCCTCTCACG+GGG + chr1_1:9847666-9847685 None:intergenic 65.0%
CTCCCCTTCCTCCCTCTCAC+GGG + chr1_1:9847667-9847686 None:intergenic 65.0%
CGTAGGGCAAGGACACCTCG+TGG - chr1_1:9848024-9848043 Msa0006850:intron 65.0%
CCTCACAGGAGACCGAGAGG+GGG + chr1_1:9848151-9848170 None:intergenic 65.0%
GGAGTTCTTCTCCGTGGCGG+TGG + chr1_1:9848357-9848376 None:intergenic 65.0%
GCCCACCTTACCGAGCACGA+AGG - chr1_1:9848638-9848657 Msa0006850:intron 65.0%
GGAGGGGGTGGGCATGCTAG+AGG - chr1_1:9847220-9847239 Msa0006850:intron 70.0%
GGGGGTGGGCATGCTAGAGG+AGG - chr1_1:9847223-9847242 Msa0006850:intron 70.0%
GCAGAAGCCCCGTGAGAGGG+AGG - chr1_1:9847656-9847675 Msa0006850:intron 70.0%
GCCCCGTGAGAGGGAGGAAG+GGG - chr1_1:9847662-9847681 Msa0006850:intron 70.0%
GGGCAAGGACACCTCGTGGG+AGG - chr1_1:9848028-9848047 Msa0006850:intron 70.0%
CCCCCTCTCGGTCTCCTGTG+AGG - chr1_1:9848148-9848167 Msa0006850:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 9841545 9849397 9841545 ID=Msa0006850;Name=Msa0006850
chr1_1 mRNA 9841545 9849397 9841545 ID=Msa0006850-mRNA-1;Parent=Msa0006850;Name=Msa0006850-mRNA-1;_AED=0.10;_eAED=0.10;_QI=106|1|1|1|0.92|0.85|14|515|772
chr1_1 exon 9841545 9842345 9841545 ID=Msa0006850-mRNA-1:exon:3568;Parent=Msa0006850-mRNA-1
chr1_1 exon 9842560 9842631 9842560 ID=Msa0006850-mRNA-1:exon:3567;Parent=Msa0006850-mRNA-1
chr1_1 exon 9842740 9843489 9842740 ID=Msa0006850-mRNA-1:exon:3566;Parent=Msa0006850-mRNA-1
chr1_1 exon 9843579 9843783 9843579 ID=Msa0006850-mRNA-1:exon:3565;Parent=Msa0006850-mRNA-1
chr1_1 exon 9844367 9844485 9844367 ID=Msa0006850-mRNA-1:exon:3564;Parent=Msa0006850-mRNA-1
chr1_1 exon 9844822 9845179 9844822 ID=Msa0006850-mRNA-1:exon:3563;Parent=Msa0006850-mRNA-1
chr1_1 exon 9845367 9845494 9845367 ID=Msa0006850-mRNA-1:exon:3562;Parent=Msa0006850-mRNA-1
chr1_1 exon 9846047 9846164 9846047 ID=Msa0006850-mRNA-1:exon:3561;Parent=Msa0006850-mRNA-1
chr1_1 exon 9846276 9846311 9846276 ID=Msa0006850-mRNA-1:exon:3560;Parent=Msa0006850-mRNA-1
chr1_1 exon 9846904 9846928 9846904 ID=Msa0006850-mRNA-1:exon:3559;Parent=Msa0006850-mRNA-1
chr1_1 exon 9847237 9847325 9847237 ID=Msa0006850-mRNA-1:exon:3558;Parent=Msa0006850-mRNA-1
chr1_1 exon 9847553 9847607 9847553 ID=Msa0006850-mRNA-1:exon:3557;Parent=Msa0006850-mRNA-1
chr1_1 exon 9847681 9847780 9847681 ID=Msa0006850-mRNA-1:exon:3556;Parent=Msa0006850-mRNA-1
chr1_1 exon 9849314 9849397 9849314 ID=Msa0006850-mRNA-1:exon:3555;Parent=Msa0006850-mRNA-1
chr1_1 five_prime_UTR 9849314 9849397 9849314 ID=Msa0006850-mRNA-1:five_prime_utr;Parent=Msa0006850-mRNA-1
chr1_1 five_prime_UTR 9847759 9847780 9847759 ID=Msa0006850-mRNA-1:five_prime_utr;Parent=Msa0006850-mRNA-1
chr1_1 CDS 9847681 9847758 9847681 ID=Msa0006850-mRNA-1:cds;Parent=Msa0006850-mRNA-1
chr1_1 CDS 9847553 9847607 9847553 ID=Msa0006850-mRNA-1:cds;Parent=Msa0006850-mRNA-1
chr1_1 CDS 9847237 9847325 9847237 ID=Msa0006850-mRNA-1:cds;Parent=Msa0006850-mRNA-1
chr1_1 CDS 9846904 9846928 9846904 ID=Msa0006850-mRNA-1:cds;Parent=Msa0006850-mRNA-1
chr1_1 CDS 9846276 9846311 9846276 ID=Msa0006850-mRNA-1:cds;Parent=Msa0006850-mRNA-1
chr1_1 CDS 9846047 9846164 9846047 ID=Msa0006850-mRNA-1:cds;Parent=Msa0006850-mRNA-1
chr1_1 CDS 9845367 9845494 9845367 ID=Msa0006850-mRNA-1:cds;Parent=Msa0006850-mRNA-1
chr1_1 CDS 9844822 9845179 9844822 ID=Msa0006850-mRNA-1:cds;Parent=Msa0006850-mRNA-1
chr1_1 CDS 9844367 9844485 9844367 ID=Msa0006850-mRNA-1:cds;Parent=Msa0006850-mRNA-1
chr1_1 CDS 9843579 9843783 9843579 ID=Msa0006850-mRNA-1:cds;Parent=Msa0006850-mRNA-1
chr1_1 CDS 9842740 9843489 9842740 ID=Msa0006850-mRNA-1:cds;Parent=Msa0006850-mRNA-1
chr1_1 CDS 9842560 9842631 9842560 ID=Msa0006850-mRNA-1:cds;Parent=Msa0006850-mRNA-1
chr1_1 CDS 9842060 9842345 9842060 ID=Msa0006850-mRNA-1:cds;Parent=Msa0006850-mRNA-1
chr1_1 three_prime_UTR 9841545 9842059 9841545 ID=Msa0006850-mRNA-1:three_prime_utr;Parent=Msa0006850-mRNA-1
Gene Sequence

>Msa0006850

ATGGCAAAGAAGAAAAACCCCATGGTGTTTATGGACGTGTCTGTAGACGGGGATCCTTATGAAAGAATGGTTTTTGAGCTTTTCTACGATGTTGCTCCAAAGACTGCTGAAAATTTTCGTGCACTGTGTACCGGAGAAAAAGGAGTCAGTCCTAATACTGGAAAATCACTGCACTACAAGGGTTCTTTCTTCCATCAGATCGTAAAAGGCTCCATTGTTAAGGGTGGAGACTTTATCAATCGAAATGGGACTGGTGGAGAGAGCATATACCCCAAGTTCCCAGAGGAGTCTCCTAGGCTAAAGCATGATTCTCCAGGCCTTCTATCTATGGCGATTGCTGATCGTGACACTCTTGGTTCACATTTTATCATCACTTTGAAAGCTGATCACCATCTTGATAGGAAGCATGTGGTTTTTGGCAAGCTGTTGCAAGGGTATGATATATTGAAGAAAATTGAAGATGTAGGCAATGAAGAAGGACTCCCAGCCGTAACTGTCAAAATAATTAATTGTGGTGAACACAATGAGGATGGAAAGAAGACTCACAAGTCAAAAATTGGAAGGAATGGATCTTCTGAAGCAAATAGTCATGAAGTGCGGAGAAAGGGAAAGCATAAAAAATCTTCAGGAGACAGAAGGAAGAAGAGAAAACATTACTCATCAGAATCAGATAGTTCCTCAGATTCCGACATGGAATCTTCTGAAAGTGATAGTGACTCTGACTCAGATTTGTCCTCGTCATCTTACACAAGTTCATCTAGTGATGACAGGCGGAGGAAAAGAAAGAGATCTAGGAAAGATAAACATAGACATGGAAAAAGAAGAGATAAACGTCGAGAAAAGAGGCGAAGGAAACAAGATAAGAGATCAAAACGTAAATCAAGGAGGGAATCAGGCAGTCATTCTGATGCAGATAGTGCAAGTAAGAGTAACGATAATTCTAACGGCAAAGGTCTTGATACTCAAGAGAAAATTCTGAAGCAAAAAGATCATTCTCAGATAGATGCTGAAGTCCAGTCATCCTCAGTTTTGGAGAAAGAGTTACCTCCACTGAATCATAAAAAGAGGGAGGGGGTGGGCATGCTAGAGGAGGAAGAATTCCCAAAAGAAAATGGAGCGCAGCCTAGCAACGGCATCAAGGCCAACTATAGACCTGACAGAAGTGAAGAAAGGCAGCATGACGTGATGGATGATAATCCAGGAAAATCTAGGAGTCGAAGCATGAGTCCTAAGCAAACCGTGAGCAAGAGTATGAGTATTAGTCCCAAGTGTGTGTGCAAAAGCCCGAGCATTAGTCCAAAGAGGAGGTTTAGCAGAAGTCCAAGTGGTAGTAAAAGTCCTCGTGCTCTATCGCGGAGGAGTTTGAGCAGGAGTCCTGTTAGAAGAATAAGCAGGAGTCTAAACAGAAACGTCAGCAGAAGCCCCGTGAGAGGGAGGAAGGGGAGAAGTATCAGTAGAAGCCCTATGAGAACAACACACATTCATAGAAGTGTCAGCAAGAGCCCTGTGAGAAGTCCCGATCGTAGAAGTCTTAGCAAGAGCCCTGCCAGATCTGTTTCTCAAAGCCGTAGGAGTTCTGCTAGAGTATCATCACGAAGAACAGTCAGTAGGAGTCCTGTAAGAGTGTCAAGAAAGAGCATAAGCAGGAGTCCAGTTAGATCATCTGCCAGAAGTCTCAGCAGGAGTTCCGGCCGAGTTCCTTTGAGAAGCATTAGCCGAAGTCCTGTCAGAGTGGCAAGCAGAGGCAATCACCGCAGCTATTCCAGGAGTCGTAGCCCTGTTCGTAGGGCAAGGACACCTCGTGGGAGGAGTCTGTCGAAGAGTGTGTCACCCGATGCTTCACCAAAACGTATCAGAAGGGGAAGAGGTTTCAGTGAAAGATACTCTTATGCTAGAAGGTATAGAACCCCCTCTCGGTCTCCTGTGAGGTACCGCTATAATGGAAGGAATGACCGTGACAGATATTCAGGATACAGAAGGTACTCCCCTAGGCGTTTTAGGAGCCCACCGCCACGGAGAAGAACTCCACCAAGGTACCGGAGTAGGAGAAGCAGGACACCGTCTATATCACGAAGCCCACCTTACCGAGCACGAAGGTATAGCCCAAGCCCTAGCCCAATTCGCAACCGCTCACCTCCTCGTGTGAATAGGCGTGCGTCATCATCCCTCAGCAGGAGTCCATCTCGATCCAGGTCTTCTGTGGAATCACTATCTCCAAGAAAAGTAAGCAAAGATAACAGGTCAAGGTCTCCTTCTAGAAGCTCAGACGGAAAGAAAGGCCTGGTCTCTTATGGAAATGGTTCTCCTGATTCAAGCTAA
Protein sequence

>Msa0006850

MAKKKNPMVFMDVSVDGDPYERMVFELFYDVAPKTAENFRALCTGEKGVSPNTGKSLHYKGSFFHQIVKGSIVKGGDFINRNGTGGESIYPKFPEESPRLKHDSPGLLSMAIADRDTLGSHFIITLKADHHLDRKHVVFGKLLQGYDILKKIEDVGNEEGLPAVTVKIINCGEHNEDGKKTHKSKIGRNGSSEANSHEVRRKGKHKKSSGDRRKKRKHYSSESDSSSDSDMESSESDSDSDSDLSSSSYTSSSSDDRRRKRKRSRKDKHRHGKRRDKRREKRRRKQDKRSKRKSRRESGSHSDADSASKSNDNSNGKGLDTQEKILKQKDHSQIDAEVQSSSVLEKELPPLNHKKREGVGMLEEEEFPKENGAQPSNGIKANYRPDRSEERQHDVMDDNPGKSRSRSMSPKQTVSKSMSISPKCVCKSPSISPKRRFSRSPSGSKSPRALSRRSLSRSPVRRISRSLNRNVSRSPVRGRKGRSISRSPMRTTHIHRSVSKSPVRSPDRRSLSKSPARSVSQSRRSSARVSSRRTVSRSPVRVSRKSISRSPVRSSARSLSRSSGRVPLRSISRSPVRVASRGNHRSYSRSRSPVRRARTPRGRSLSKSVSPDASPKRIRRGRGFSERYSYARRYRTPSRSPVRYRYNGRNDRDRYSGYRRYSPRRFRSPPPRRRTPPRYRSRRSRTPSISRSPPYRARRYSPSPSPIRNRSPPRVNRRASSSLSRSPSRSRSSVESLSPRKVSKDNRSRSPSRSSDGKKGLVSYGNGSPDSS*