AlfalfaGEDB | Msa0006850

M. sativa cultivar zhongmu-4 / Msa0006850

KEGG: K01802|K09566
GO: GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00160.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0006850	XP_003588721.2	96.891	772	24	0	1	772	1	772	0.0	1449

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0006850	sp\|Q8RWY7\|CYP95_ARATH	71.429	175	49	1	1	174	1	175	1.01e-82	284

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006850	Msa0050520	0.939299	1.604525e-99	-8.615850e-47
Msa0006850	Msa0100590	0.948520	8.023385e-107	-8.615850e-47
Msa0006850	Msa0100880	0.937175	5.311245e-98	-8.615850e-47
Msa0006850	Msa0162090	-0.807205	5.662745e-50	-8.615850e-47
Msa0006850	Msa0317970	-0.813808	2.121815e-51	-8.615850e-47
Msa0006850	Msa0381610	0.806317	8.723705e-50	-8.615850e-47
Msa0006850	Msa0436920	0.817502	3.189637e-52	-8.615850e-47
Msa0006850	Msa0469620	0.807450	5.023975e-50	-8.615850e-47
Msa0006850	Msa0534400	-0.801734	7.830435e-49	-8.615850e-47
Msa0006850	Msa0638360	-0.806396	8.394152e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0006850	MtrunA17_Chr1g0149061	96.891	772	24	0	1	772	1	772	0.0	1449
Msa0006850	MtrunA17_Chr3g0138061	77.727	220	48	1	1	219	4	223	1.07e-120	384
Msa0006850	MtrunA17_Chr7g0260441	60.920	174	67	1	1	173	1	174	4.52e-66	231
Msa0006850	MtrunA17_Chr7g0260441	39.474	266	93	12	550	771	407	648	1.52e-18	90.5
Msa0006850	MtrunA17_Chr4g0038431	55.030	169	74	2	6	173	3	170	1.87e-52	179
Msa0006850	MtrunA17_Chr3g0113441	54.819	166	73	2	9	173	66	230	1.43e-49	174
Msa0006850	MtrunA17_Chr7g0274841	50.888	169	81	2	6	173	3	170	5.01e-49	170
Msa0006850	MtrunA17_Chr4g0045321	52.096	167	78	2	9	173	6	172	5.37e-49	176
Msa0006850	MtrunA17_Chr3g0104751	54.217	166	74	2	9	173	36	200	7.98e-48	168
Msa0006850	MtrunA17_Chr8g0374621	50.575	174	82	3	6	176	3	175	3.77e-46	169

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0006850	AT4G32420.1	71.429	175	49	1	1	174	1	175	1.03e-83	284
Msa0006850	AT4G32420.5	71.429	175	49	1	1	174	1	175	1.03e-83	284
Msa0006850	AT4G32420.3	71.429	175	49	1	1	174	1	175	1.03e-83	284
Msa0006850	AT4G32420.6	71.429	175	49	1	1	174	1	175	1.03e-83	284
Msa0006850	AT4G32420.4	71.875	160	44	1	1	159	1	160	1.79e-75	261
Msa0006850	AT3G63400.2	60.920	174	67	1	1	173	1	174	1.63e-67	228
Msa0006850	AT3G63400.3	60.920	174	67	1	1	173	1	174	2.20e-66	231
Msa0006850	AT3G63400.4	60.920	174	67	1	1	173	1	174	2.20e-66	231
Msa0006850	AT3G63400.1	60.920	174	67	1	1	173	1	174	2.20e-66	231
Msa0006850	AT3G56070.1	53.254	169	77	2	6	173	3	170	1.08e-50	175

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Find 227 sgRNAs with CRISPR-Local

Find 561 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCATGAGTTTAACTGA+TGG	0.593260	1_1:-9841722	Msa0006850:three_prime_UTR
AAACCTCACCTTAAATGAGC+TGG	0.508169	1_1:-9842006	Msa0006850:three_prime_UTR
AAACGTATCAGAAGGGGAAG+AGG	0.560741	1_1:-9842833	Msa0006850:CDS
AAAGATACTCTTATGCTAGA+AGG	0.424339	1_1:-9842802	Msa0006850:CDS
AAAGATCATTCTCAGATAGA+TGG	0.415084	1_1:-9844366	Msa0006850:intron
AAAGGAGTCAGTCCTAATAC+TGG	0.399979	1_1:-9847298	Msa0006850:CDS
AAAGTCCTCGTGCTCTATCG+CGG	0.575279	1_1:-9843345	Msa0006850:CDS
AACCATTTCCATAAGAGACC+AGG	0.606821	1_1:+9842077	None:intergenic
AACGATAATTCTAACGGCAA+AGG	0.571157	1_1:-9844420	Msa0006850:CDS
AACGTCGAGAAAAGAGGCGA+AGG	0.601122	1_1:-9844857	Msa0006850:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCCTTCCTCAATTCAAAATT+AGG	-	chr1_1:9841647-9841666	Msa0006850:three_prime_UTR	30.0%
CACTCAATTGAAGATTATTG+TGG	-	chr1_1:9841829-9841848	Msa0006850:three_prime_UTR	30.0%
GATAACTGTTAGGTTATGTT+TGG	-	chr1_1:9841978-9841997	Msa0006850:three_prime_UTR	30.0%
AATAAGGTGAAAACAGCTTA+TGG	-	chr1_1:9842138-9842157	Msa0006850:CDS	30.0%
GATAAGTTGTTTATCCAAAC+AGG	+	chr1_1:9842172-9842191	None:intergenic	30.0%
GTTTGGATAAACAACTTATC+TGG	-	chr1_1:9842172-9842191	Msa0006850:CDS	30.0%
CTTATGCTTATCATGATAAG+TGG	-	chr1_1:9842197-9842216	Msa0006850:CDS	30.0%
TCAAATAAGCCAATTCAAAC+AGG	-	chr1_1:9842417-9842436	Msa0006850:intron	30.0%
GTAAATCAAGATTTCATTGC+GGG	+	chr1_1:9842638-9842657	None:intergenic	30.0%
ATGAATCAGTTAGACATTTC+TGG	+	chr1_1:9842687-9842706	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	9841545	9849397	9841545	ID=Msa0006850;Name=Msa0006850
chr1_1	mRNA	9841545	9849397	9841545	ID=Msa0006850-mRNA-1;Parent=Msa0006850;Name=Msa0006850-mRNA-1;_AED=0.10;_eAED=0.10;_QI=106\|1\|1\|1\|0.92\|0.85\|14\|515\|772
chr1_1	exon	9841545	9842345	9841545	ID=Msa0006850-mRNA-1:exon:3568;Parent=Msa0006850-mRNA-1
chr1_1	exon	9842560	9842631	9842560	ID=Msa0006850-mRNA-1:exon:3567;Parent=Msa0006850-mRNA-1
chr1_1	exon	9842740	9843489	9842740	ID=Msa0006850-mRNA-1:exon:3566;Parent=Msa0006850-mRNA-1
chr1_1	exon	9843579	9843783	9843579	ID=Msa0006850-mRNA-1:exon:3565;Parent=Msa0006850-mRNA-1
chr1_1	exon	9844367	9844485	9844367	ID=Msa0006850-mRNA-1:exon:3564;Parent=Msa0006850-mRNA-1
chr1_1	exon	9844822	9845179	9844822	ID=Msa0006850-mRNA-1:exon:3563;Parent=Msa0006850-mRNA-1
chr1_1	exon	9845367	9845494	9845367	ID=Msa0006850-mRNA-1:exon:3562;Parent=Msa0006850-mRNA-1
chr1_1	exon	9846047	9846164	9846047	ID=Msa0006850-mRNA-1:exon:3561;Parent=Msa0006850-mRNA-1
chr1_1	exon	9846276	9846311	9846276	ID=Msa0006850-mRNA-1:exon:3560;Parent=Msa0006850-mRNA-1
chr1_1	exon	9846904	9846928	9846904	ID=Msa0006850-mRNA-1:exon:3559;Parent=Msa0006850-mRNA-1
chr1_1	exon	9847237	9847325	9847237	ID=Msa0006850-mRNA-1:exon:3558;Parent=Msa0006850-mRNA-1
chr1_1	exon	9847553	9847607	9847553	ID=Msa0006850-mRNA-1:exon:3557;Parent=Msa0006850-mRNA-1
chr1_1	exon	9847681	9847780	9847681	ID=Msa0006850-mRNA-1:exon:3556;Parent=Msa0006850-mRNA-1
chr1_1	exon	9849314	9849397	9849314	ID=Msa0006850-mRNA-1:exon:3555;Parent=Msa0006850-mRNA-1
chr1_1	five_prime_UTR	9849314	9849397	9849314	ID=Msa0006850-mRNA-1:five_prime_utr;Parent=Msa0006850-mRNA-1
chr1_1	five_prime_UTR	9847759	9847780	9847759	ID=Msa0006850-mRNA-1:five_prime_utr;Parent=Msa0006850-mRNA-1
chr1_1	CDS	9847681	9847758	9847681	ID=Msa0006850-mRNA-1:cds;Parent=Msa0006850-mRNA-1
chr1_1	CDS	9847553	9847607	9847553	ID=Msa0006850-mRNA-1:cds;Parent=Msa0006850-mRNA-1
chr1_1	CDS	9847237	9847325	9847237	ID=Msa0006850-mRNA-1:cds;Parent=Msa0006850-mRNA-1
chr1_1	CDS	9846904	9846928	9846904	ID=Msa0006850-mRNA-1:cds;Parent=Msa0006850-mRNA-1
chr1_1	CDS	9846276	9846311	9846276	ID=Msa0006850-mRNA-1:cds;Parent=Msa0006850-mRNA-1
chr1_1	CDS	9846047	9846164	9846047	ID=Msa0006850-mRNA-1:cds;Parent=Msa0006850-mRNA-1
chr1_1	CDS	9845367	9845494	9845367	ID=Msa0006850-mRNA-1:cds;Parent=Msa0006850-mRNA-1
chr1_1	CDS	9844822	9845179	9844822	ID=Msa0006850-mRNA-1:cds;Parent=Msa0006850-mRNA-1
chr1_1	CDS	9844367	9844485	9844367	ID=Msa0006850-mRNA-1:cds;Parent=Msa0006850-mRNA-1
chr1_1	CDS	9843579	9843783	9843579	ID=Msa0006850-mRNA-1:cds;Parent=Msa0006850-mRNA-1
chr1_1	CDS	9842740	9843489	9842740	ID=Msa0006850-mRNA-1:cds;Parent=Msa0006850-mRNA-1
chr1_1	CDS	9842560	9842631	9842560	ID=Msa0006850-mRNA-1:cds;Parent=Msa0006850-mRNA-1
chr1_1	CDS	9842060	9842345	9842060	ID=Msa0006850-mRNA-1:cds;Parent=Msa0006850-mRNA-1
chr1_1	three_prime_UTR	9841545	9842059	9841545	ID=Msa0006850-mRNA-1:three_prime_utr;Parent=Msa0006850-mRNA-1

Gene Sequence

>Msa0006850

ATGGCAAAGAAGAAAAACCCCATGGTGTTTATGGACGTGTCTGTAGACGGGGATCCTTATGAAAGAATGGTTTTTGAGCTTTTCTACGATGTTGCTCCAAAGACTGCTGAAAATTTTCGTGCACTGTGTACCGGAGAAAAAGGAGTCAGTCCTAATACTGGAAAATCACTGCACTACAAGGGTTCTTTCTTCCATCAGATCGTAAAAGGCTCCATTGTTAAGGGTGGAGACTTTATCAATCGAAATGGGACTGGTGGAGAGAGCATATACCCCAAGTTCCCAGAGGAGTCTCCTAGGCTAAAGCATGATTCTCCAGGCCTTCTATCTATGGCGATTGCTGATCGTGACACTCTTGGTTCACATTTTATCATCACTTTGAAAGCTGATCACCATCTTGATAGGAAGCATGTGGTTTTTGGCAAGCTGTTGCAAGGGTATGATATATTGAAGAAAATTGAAGATGTAGGCAATGAAGAAGGACTCCCAGCCGTAACTGTCAAAATAATTAATTGTGGTGAACACAATGAGGATGGAAAGAAGACTCACAAGTCAAAAATTGGAAGGAATGGATCTTCTGAAGCAAATAGTCATGAAGTGCGGAGAAAGGGAAAGCATAAAAAATCTTCAGGAGACAGAAGGAAGAAGAGAAAACATTACTCATCAGAATCAGATAGTTCCTCAGATTCCGACATGGAATCTTCTGAAAGTGATAGTGACTCTGACTCAGATTTGTCCTCGTCATCTTACACAAGTTCATCTAGTGATGACAGGCGGAGGAAAAGAAAGAGATCTAGGAAAGATAAACATAGACATGGAAAAAGAAGAGATAAACGTCGAGAAAAGAGGCGAAGGAAACAAGATAAGAGATCAAAACGTAAATCAAGGAGGGAATCAGGCAGTCATTCTGATGCAGATAGTGCAAGTAAGAGTAACGATAATTCTAACGGCAAAGGTCTTGATACTCAAGAGAAAATTCTGAAGCAAAAAGATCATTCTCAGATAGATGCTGAAGTCCAGTCATCCTCAGTTTTGGAGAAAGAGTTACCTCCACTGAATCATAAAAAGAGGGAGGGGGTGGGCATGCTAGAGGAGGAAGAATTCCCAAAAGAAAATGGAGCGCAGCCTAGCAACGGCATCAAGGCCAACTATAGACCTGACAGAAGTGAAGAAAGGCAGCATGACGTGATGGATGATAATCCAGGAAAATCTAGGAGTCGAAGCATGAGTCCTAAGCAAACCGTGAGCAAGAGTATGAGTATTAGTCCCAAGTGTGTGTGCAAAAGCCCGAGCATTAGTCCAAAGAGGAGGTTTAGCAGAAGTCCAAGTGGTAGTAAAAGTCCTCGTGCTCTATCGCGGAGGAGTTTGAGCAGGAGTCCTGTTAGAAGAATAAGCAGGAGTCTAAACAGAAACGTCAGCAGAAGCCCCGTGAGAGGGAGGAAGGGGAGAAGTATCAGTAGAAGCCCTATGAGAACAACACACATTCATAGAAGTGTCAGCAAGAGCCCTGTGAGAAGTCCCGATCGTAGAAGTCTTAGCAAGAGCCCTGCCAGATCTGTTTCTCAAAGCCGTAGGAGTTCTGCTAGAGTATCATCACGAAGAACAGTCAGTAGGAGTCCTGTAAGAGTGTCAAGAAAGAGCATAAGCAGGAGTCCAGTTAGATCATCTGCCAGAAGTCTCAGCAGGAGTTCCGGCCGAGTTCCTTTGAGAAGCATTAGCCGAAGTCCTGTCAGAGTGGCAAGCAGAGGCAATCACCGCAGCTATTCCAGGAGTCGTAGCCCTGTTCGTAGGGCAAGGACACCTCGTGGGAGGAGTCTGTCGAAGAGTGTGTCACCCGATGCTTCACCAAAACGTATCAGAAGGGGAAGAGGTTTCAGTGAAAGATACTCTTATGCTAGAAGGTATAGAACCCCCTCTCGGTCTCCTGTGAGGTACCGCTATAATGGAAGGAATGACCGTGACAGATATTCAGGATACAGAAGGTACTCCCCTAGGCGTTTTAGGAGCCCACCGCCACGGAGAAGAACTCCACCAAGGTACCGGAGTAGGAGAAGCAGGACACCGTCTATATCACGAAGCCCACCTTACCGAGCACGAAGGTATAGCCCAAGCCCTAGCCCAATTCGCAACCGCTCACCTCCTCGTGTGAATAGGCGTGCGTCATCATCCCTCAGCAGGAGTCCATCTCGATCCAGGTCTTCTGTGGAATCACTATCTCCAAGAAAAGTAAGCAAAGATAACAGGTCAAGGTCTCCTTCTAGAAGCTCAGACGGAAAGAAAGGCCTGGTCTCTTATGGAAATGGTTCTCCTGATTCAAGCTAA

Protein sequence

>Msa0006850

MAKKKNPMVFMDVSVDGDPYERMVFELFYDVAPKTAENFRALCTGEKGVSPNTGKSLHYKGSFFHQIVKGSIVKGGDFINRNGTGGESIYPKFPEESPRLKHDSPGLLSMAIADRDTLGSHFIITLKADHHLDRKHVVFGKLLQGYDILKKIEDVGNEEGLPAVTVKIINCGEHNEDGKKTHKSKIGRNGSSEANSHEVRRKGKHKKSSGDRRKKRKHYSSESDSSSDSDMESSESDSDSDSDLSSSSYTSSSSDDRRRKRKRSRKDKHRHGKRRDKRREKRRRKQDKRSKRKSRRESGSHSDADSASKSNDNSNGKGLDTQEKILKQKDHSQIDAEVQSSSVLEKELPPLNHKKREGVGMLEEEEFPKENGAQPSNGIKANYRPDRSEERQHDVMDDNPGKSRSRSMSPKQTVSKSMSISPKCVCKSPSISPKRRFSRSPSGSKSPRALSRRSLSRSPVRRISRSLNRNVSRSPVRGRKGRSISRSPMRTTHIHRSVSKSPVRSPDRRSLSKSPARSVSQSRRSSARVSSRRTVSRSPVRVSRKSISRSPVRSSARSLSRSSGRVPLRSISRSPVRVASRGNHRSYSRSRSPVRRARTPRGRSLSKSVSPDASPKRIRRGRGFSERYSYARRYRTPSRSPVRYRYNGRNDRDRYSGYRRYSPRRFRSPPPRRRTPPRYRSRRSRTPSISRSPPYRARRYSPSPSPIRNRSPPRVNRRASSSLSRSPSRSRSSVESLSPRKVSKDNRSRSPSRSSDGKKGLVSYGNGSPDSS*