AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0194060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0194060 MtrunA17_Chr2g0284491 99.138 116 1 0 1 116 1 116 6.48e-80 230
Msa0194060 MtrunA17_Chr4g0071441 39.773 88 53 0 27 114 13 100 1.58e-15 67.0
Msa0194060 MtrunA17_Chr2g0299011 38.235 102 52 2 13 114 11 101 3.20e-15 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0194060 AT3G29170.1 69.421 121 32 3 1 116 1 121 5.89e-41 132
Msa0194060 AT3G29170.2 69.421 121 32 3 1 116 1 121 5.89e-41 132
Msa0194060 AT2G19350.1 40.777 103 50 2 13 115 11 102 6.46e-17 70.5
Msa0194060 AT4G29850.1 46.753 77 41 0 38 114 25 101 1.64e-16 69.7

Find 63 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCACTCTTCCTGTTGTTTCT+TGG 0.192760 2_1:-9923050 Msa0194060:CDS
ATTAAAATAGGCTCAGTTTA+AGG 0.207799 2_1:+9921572 None:intergenic
CTTCATTGCGACAAAGAAAT+TGG 0.208446 2_1:-9923911 None:intergenic
TGATTCCACATAATTAAAAT+AGG 0.284354 2_1:+9921560 None:intergenic
GCTTATGGCCTTCTAGCATT+AGG 0.311927 2_1:-9922963 Msa0194060:CDS
ATTAAATAAAATTGTACAAT+GGG 0.322830 2_1:-9921727 Msa0194060:three_prime_UTR
ACTCATCTGCTCTAGTAATC+AGG 0.341410 2_1:+9921807 None:intergenic
TGCAAGGGCAATAGATTTCC+AGG 0.357241 2_1:+9923070 None:intergenic
GAACTCAGAAATATTTGATA+TGG 0.357772 2_1:-9923210 Msa0194060:exon
TCCAAGTCGTGATCAGATTT+CGG 0.394709 2_1:-9921777 Msa0194060:three_prime_UTR
GGAGAACGCTCTCAAGCTTA+TGG 0.407602 2_1:-9922978 Msa0194060:CDS
TTCCTGTTGTTTCTTGGTAC+CGG 0.410486 2_1:-9923044 Msa0194060:CDS
ATAACCTTTGGCACCTCTCC+AGG 0.443432 2_1:+9921845 None:intergenic
CCTGTCACATTGGTTTGTCA+AGG 0.450401 2_1:-9921520 Msa0194060:three_prime_UTR
TCAGAAATCCTAATGCTAGA+AGG 0.461382 2_1:+9922955 None:intergenic
GGCAGAAAAGCGATAACCTT+TGG 0.470024 2_1:+9921833 None:intergenic
CTCGACTTGCGTATTATGCC+TGG 0.479144 2_1:-9921863 Msa0194060:CDS
CAAAGCCAAAGTGGAAAAGA+TGG 0.490050 2_1:+9923839 None:intergenic
TAATCAAATCGAGGGTCAAA+TGG 0.497388 2_1:+9923119 None:intergenic
TGATTACACGCCGAGAGCCT+TGG 0.505818 2_1:-9923102 Msa0194060:CDS
CTCATCTGCTCTAGTAATCA+GGG 0.506727 2_1:+9921808 None:intergenic
GCTGTGTTTATTTGAGCCGA+GGG 0.512700 2_1:-9923275 Msa0194060:five_prime_UTR
CATCCTCATCTGTGGCAAGA+GGG 0.516381 2_1:+9923165 None:intergenic
GTCCGGTACCAAGAAACAAC+AGG 0.517931 2_1:+9923042 None:intergenic
ACTGTACTTTCCTGTCACAT+TGG 0.520487 2_1:-9921530 Msa0194060:three_prime_UTR
GATTAAATAAAATTGTACAA+TGG 0.524142 2_1:-9921728 Msa0194060:three_prime_UTR
GAAACAACAGGAAGAGTGCA+AGG 0.526346 2_1:+9923054 None:intergenic
GGCTGTGTTTATTTGAGCCG+AGG 0.535343 2_1:-9923276 Msa0194060:five_prime_UTR
AGAAATTGGTAAAATTATGA+AGG 0.536911 2_1:-9923897 Msa0194060:five_prime_UTR
GAAATCTGATCACGACTTGG+AGG 0.543109 2_1:+9921779 None:intergenic
TTATCAGCCGCCAGAAACAC+CGG 0.543339 2_1:-9923754 Msa0194060:five_prime_UTR
TTTATTATACAAAGCCAAAG+TGG 0.557048 2_1:+9923830 None:intergenic
CCTTGACAAACCAATGTGAC+AGG 0.561193 2_1:+9921520 None:intergenic
GGAACTCTGTCCAAGGCTCT+CGG 0.563215 2_1:+9923092 None:intergenic
GAGCCTTGGACAGAGTTCCC+TGG 0.576818 2_1:-9923088 Msa0194060:CDS
ATCCTCATCTGTGGCAAGAG+GGG 0.579989 2_1:+9923166 None:intergenic
GAAAATCGTAGGAGCAAGCA+AGG 0.590931 2_1:-9923232 Msa0194060:five_prime_UTR
GGATTTCTGAGCTTTCTCCC+AGG 0.593664 2_1:-9922942 Msa0194060:intron
GTACGAAAGAAACAGAAGTC+CGG 0.595202 2_1:+9923025 None:intergenic
AAGTCGCCAGAAAACGCAGC+CGG 0.600705 2_1:-9923783 Msa0194060:five_prime_UTR
AATAACAGTAAAATCTAGCG+TGG 0.600826 2_1:-9921636 Msa0194060:three_prime_UTR
TTAAATAAAATTGTACAATG+GGG 0.601904 2_1:-9921726 Msa0194060:three_prime_UTR
CGTAGCTGTAATTCTAACAC+GGG 0.607384 2_1:-9923297 Msa0194060:five_prime_UTR
TCATCCTCATCTGTGGCAAG+AGG 0.609309 2_1:+9923164 None:intergenic
CACCCCTCTTGCCACAGATG+AGG 0.620897 2_1:-9923168 Msa0194060:CDS
AAACAACAGGAAGAGTGCAA+GGG 0.621765 2_1:+9923055 None:intergenic
ACCGAAATCTGATCACGACT+TGG 0.622904 2_1:+9921776 None:intergenic
TGTGTTTATTTGAGCCGAGG+GGG 0.628105 2_1:-9923273 Msa0194060:five_prime_UTR
TATGCCTGGAGAGGTGCCAA+AGG 0.628849 2_1:-9921849 Msa0194060:CDS
TCGTAGCTGTAATTCTAACA+CGG 0.637497 2_1:-9923298 Msa0194060:five_prime_UTR
AAATCTGATCACGACTTGGA+GGG 0.638029 2_1:+9921780 None:intergenic
TTTCCAGGGAACTCTGTCCA+AGG 0.638212 2_1:+9923085 None:intergenic
TACAGCTACGACTAAGCACA+AGG 0.638828 2_1:+9923310 None:intergenic
CTTGCGTATTATGCCTGGAG+AGG 0.644764 2_1:-9921858 Msa0194060:CDS
CTCGGCGTGTAATCAAATCG+AGG 0.645629 2_1:+9923110 None:intergenic
AACGTAATCATCCTCATCTG+TGG 0.648920 2_1:+9923157 None:intergenic
CTGTGTTTATTTGAGCCGAG+GGG 0.653999 2_1:-9923274 Msa0194060:five_prime_UTR
TCGGCGTGTAATCAAATCGA+GGG 0.655882 2_1:+9923111 None:intergenic
TCTGCTCTAGTAATCAGGGA+TGG 0.656012 2_1:+9921812 None:intergenic
TGGCGGCTGATAACGAACTC+CGG 0.663946 2_1:+9923764 None:intergenic
GCAAGGGCAATAGATTTCCA+GGG 0.694017 2_1:+9923071 None:intergenic
ACAGATGAGGATGATTACGT+TGG 0.696064 2_1:-9923155 Msa0194060:CDS
ATGGATGAGGAAAACCTGGG+CGG 0.761931 2_1:+9923724 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATTAATATAAACATCA+GGG - chr2_1:9922551-9922570 Msa0194060:intron 10.0%
!! ATTAAATAAAATTGTACAAT+GGG - chr2_1:9923680-9923699 Msa0194060:intron 10.0%
!! TTTAATTAATATAAACATCA+GGG - chr2_1:9922551-9922570 Msa0194060:intron 10.0%
!! ATTAAATAAAATTGTACAAT+GGG - chr2_1:9923680-9923699 Msa0194060:intron 10.0%
!! GTTTAATTAATATAAACATC+AGG - chr2_1:9922550-9922569 Msa0194060:intron 15.0%
!! TTTCAATGAATCATAAAAAA+TGG - chr2_1:9922856-9922875 Msa0194060:intron 15.0%
!! GATTAAATAAAATTGTACAA+TGG - chr2_1:9923679-9923698 Msa0194060:intron 15.0%
!! TTAAATAAAATTGTACAATG+GGG - chr2_1:9923681-9923700 Msa0194060:intron 15.0%
!! GTTTAATTAATATAAACATC+AGG - chr2_1:9922550-9922569 Msa0194060:intron 15.0%
!! TTTCAATGAATCATAAAAAA+TGG - chr2_1:9922856-9922875 Msa0194060:intron 15.0%
!! GATTAAATAAAATTGTACAA+TGG - chr2_1:9923679-9923698 Msa0194060:intron 15.0%
!! TTAAATAAAATTGTACAATG+GGG - chr2_1:9923681-9923700 Msa0194060:intron 15.0%
!! AGAAATTGGTAAAATTATGA+AGG - chr2_1:9921510-9921529 Msa0194060:three_prime_UTR 20.0%
!!! TATACATTTTTATGTTTGCT+AGG - chr2_1:9922520-9922539 Msa0194060:intron 20.0%
!!! AAAAGATAATGGTACATATA+AGG + chr2_1:9922839-9922858 None:intergenic 20.0%
!! ATGATTCATTGAAAAGATAA+TGG + chr2_1:9922850-9922869 None:intergenic 20.0%
!!! AAAAAATGGTTCTAATGTAA+TGG - chr2_1:9922870-9922889 Msa0194060:intron 20.0%
!!! GTTAAATAACTCAAACTTTT+TGG - chr2_1:9923228-9923247 Msa0194060:five_prime_UTR 20.0%
!! TGTATTCAGAAATCAATATA+AGG + chr2_1:9923511-9923530 None:intergenic 20.0%
!!! TTATATTGATTTCTGAATAC+AGG - chr2_1:9923510-9923529 Msa0194060:intron 20.0%
!! TGATTCCACATAATTAAAAT+AGG + chr2_1:9923850-9923869 None:intergenic 20.0%
!! AGAAATTGGTAAAATTATGA+AGG - chr2_1:9921510-9921529 Msa0194060:three_prime_UTR 20.0%
!!! TATACATTTTTATGTTTGCT+AGG - chr2_1:9922520-9922539 Msa0194060:intron 20.0%
!!! AAAAGATAATGGTACATATA+AGG + chr2_1:9922839-9922858 None:intergenic 20.0%
!! ATGATTCATTGAAAAGATAA+TGG + chr2_1:9922850-9922869 None:intergenic 20.0%
!!! AAAAAATGGTTCTAATGTAA+TGG - chr2_1:9922870-9922889 Msa0194060:intron 20.0%
!!! GTTAAATAACTCAAACTTTT+TGG - chr2_1:9923228-9923247 Msa0194060:five_prime_UTR 20.0%
!! TGTATTCAGAAATCAATATA+AGG + chr2_1:9923511-9923530 None:intergenic 20.0%
!!! TTATATTGATTTCTGAATAC+AGG - chr2_1:9923510-9923529 Msa0194060:intron 20.0%
!! TGATTCCACATAATTAAAAT+AGG + chr2_1:9923850-9923869 None:intergenic 20.0%
!!! TTTGTTTGTTTGTTGTTTTG+TGG + chr2_1:9921545-9921564 None:intergenic 25.0%
! TTTATTATACAAAGCCAAAG+TGG + chr2_1:9921580-9921599 None:intergenic 25.0%
! ATGAATCTGAGAAGATAAAA+CGG + chr2_1:9921717-9921736 None:intergenic 25.0%
!!! ATCTAGTTTAGATTTTGTGA+TGG - chr2_1:9921773-9921792 Msa0194060:three_prime_UTR 25.0%
! AATTCTGATAGAAATTGTGT+TGG - chr2_1:9921869-9921888 Msa0194060:CDS 25.0%
! GAACTCAGAAATATTTGATA+TGG - chr2_1:9922197-9922216 Msa0194060:intron 25.0%
!!! TTTATTTTCACTGGTCATAT+GGG - chr2_1:9922405-9922424 Msa0194060:intron 25.0%
! ATGTTATGCTATATACATCA+AGG - chr2_1:9922639-9922658 Msa0194060:intron 25.0%
! CTTTAGCAAAATCATCTTTA+TGG + chr2_1:9922666-9922685 None:intergenic 25.0%
! AGAAAAATAAACCAGCATAT+TGG - chr2_1:9922704-9922723 Msa0194060:intron 25.0%
! TTCTAAATGTTCAGATGATT+TGG - chr2_1:9922736-9922755 Msa0194060:intron 25.0%
!! AATGTTTCTGCTTATTATAC+AGG - chr2_1:9922943-9922962 Msa0194060:CDS 25.0%
! TATCATGTGCAATTATACTT+TGG + chr2_1:9922988-9923007 None:intergenic 25.0%
! TATAATTGCACATGATAGAT+AGG - chr2_1:9922991-9923010 Msa0194060:CDS 25.0%
! TCTGTAATACTTTAATCCTA+GGG + chr2_1:9923083-9923102 None:intergenic 25.0%
! ATCTGTAATACTTTAATCCT+AGG + chr2_1:9923084-9923103 None:intergenic 25.0%
!! TAGGATTAAAGTATTACAGA+TGG - chr2_1:9923083-9923102 Msa0194060:CDS 25.0%
! TATCATAGTTATTGTTGAAG+TGG - chr2_1:9923251-9923270 Msa0194060:five_prime_UTR 25.0%
! ATCATAGTTATTGTTGAAGT+GGG - chr2_1:9923252-9923271 Msa0194060:five_prime_UTR 25.0%
!!! TTTCGCATATTAGTTTGTAA+TGG + chr2_1:9923340-9923359 None:intergenic 25.0%
! AGCTAAAGAACAAATAAAAC+AGG + chr2_1:9923388-9923407 None:intergenic 25.0%
! ATTAAAATAGGCTCAGTTTA+AGG + chr2_1:9923838-9923857 None:intergenic 25.0%
!!! TTTGTTTGTTTGTTGTTTTG+TGG + chr2_1:9921545-9921564 None:intergenic 25.0%
! TTTATTATACAAAGCCAAAG+TGG + chr2_1:9921580-9921599 None:intergenic 25.0%
! ATGAATCTGAGAAGATAAAA+CGG + chr2_1:9921717-9921736 None:intergenic 25.0%
!!! ATCTAGTTTAGATTTTGTGA+TGG - chr2_1:9921773-9921792 Msa0194060:three_prime_UTR 25.0%
! AATTCTGATAGAAATTGTGT+TGG - chr2_1:9921869-9921888 Msa0194060:CDS 25.0%
! GAACTCAGAAATATTTGATA+TGG - chr2_1:9922197-9922216 Msa0194060:intron 25.0%
!!! TTTATTTTCACTGGTCATAT+GGG - chr2_1:9922405-9922424 Msa0194060:intron 25.0%
! ATGTTATGCTATATACATCA+AGG - chr2_1:9922639-9922658 Msa0194060:intron 25.0%
! CTTTAGCAAAATCATCTTTA+TGG + chr2_1:9922666-9922685 None:intergenic 25.0%
! AGAAAAATAAACCAGCATAT+TGG - chr2_1:9922704-9922723 Msa0194060:intron 25.0%
! TTCTAAATGTTCAGATGATT+TGG - chr2_1:9922736-9922755 Msa0194060:intron 25.0%
!! AATGTTTCTGCTTATTATAC+AGG - chr2_1:9922943-9922962 Msa0194060:CDS 25.0%
! TATCATGTGCAATTATACTT+TGG + chr2_1:9922988-9923007 None:intergenic 25.0%
! TATAATTGCACATGATAGAT+AGG - chr2_1:9922991-9923010 Msa0194060:CDS 25.0%
! TCTGTAATACTTTAATCCTA+GGG + chr2_1:9923083-9923102 None:intergenic 25.0%
! ATCTGTAATACTTTAATCCT+AGG + chr2_1:9923084-9923103 None:intergenic 25.0%
!! TAGGATTAAAGTATTACAGA+TGG - chr2_1:9923083-9923102 Msa0194060:CDS 25.0%
! TATCATAGTTATTGTTGAAG+TGG - chr2_1:9923251-9923270 Msa0194060:five_prime_UTR 25.0%
! ATCATAGTTATTGTTGAAGT+GGG - chr2_1:9923252-9923271 Msa0194060:five_prime_UTR 25.0%
!!! TTTCGCATATTAGTTTGTAA+TGG + chr2_1:9923340-9923359 None:intergenic 25.0%
! AGCTAAAGAACAAATAAAAC+AGG + chr2_1:9923388-9923407 None:intergenic 25.0%
! ATTAAAATAGGCTCAGTTTA+AGG + chr2_1:9923838-9923857 None:intergenic 25.0%
! AAAAACCATCTTTTCCACTT+TGG - chr2_1:9921563-9921582 Msa0194060:three_prime_UTR 30.0%
AGATAAAACGGAAAAAGGAA+TGG + chr2_1:9921705-9921724 None:intergenic 30.0%
TGAGAAGATAAAACGGAAAA+AGG + chr2_1:9921710-9921729 None:intergenic 30.0%
TTATCTTCTCAGATTCATTC+AGG - chr2_1:9921719-9921738 Msa0194060:three_prime_UTR 30.0%
!!! AAAATCCCCTTTTTTTGATG+CGG - chr2_1:9921747-9921766 Msa0194060:three_prime_UTR 30.0%
! TTGAATGTAATCACGTGTTT+TGG - chr2_1:9921966-9921985 Msa0194060:intron 30.0%
!!! CTTTCGTACTTTATTTTCAC+TGG - chr2_1:9922396-9922415 Msa0194060:intron 30.0%
!!! CTTTATTTTCACTGGTCATA+TGG - chr2_1:9922404-9922423 Msa0194060:intron 30.0%
! TTATTTTCACTGGTCATATG+GGG - chr2_1:9922406-9922425 Msa0194060:intron 30.0%
ATACAAGTGATACAAATTCC+CGG + chr2_1:9922503-9922522 None:intergenic 30.0%
! TTTATGTTTGCTAGGTACTT+TGG - chr2_1:9922528-9922547 Msa0194060:intron 30.0%
CATCTGAACATTTAGAAAGT+TGG + chr2_1:9922733-9922752 None:intergenic 30.0%
! AGATAATGGTACATATAAGG+AGG + chr2_1:9922836-9922855 None:intergenic 30.0%
AACAATCTACATGCAATTCT+TGG + chr2_1:9922915-9922934 None:intergenic 30.0%
ATTGCATGTAGATTGTTTCA+TGG - chr2_1:9922918-9922937 Msa0194060:intron 30.0%
TTGCATGTAGATTGTTTCAT+GGG - chr2_1:9922919-9922938 Msa0194060:intron 30.0%
CTGTAATACTTTAATCCTAG+GGG + chr2_1:9923082-9923101 None:intergenic 30.0%
GTAAAGCATATGTAAGTGTT+GGG + chr2_1:9923168-9923187 None:intergenic 30.0%
ATCAATATGAACATGAATGC+AGG + chr2_1:9923445-9923464 None:intergenic 30.0%
AATAACAGTAAAATCTAGCG+TGG - chr2_1:9923771-9923790 Msa0194060:five_prime_UTR 30.0%
!!! CTGAGCCTATTTTAATTATG+TGG - chr2_1:9923842-9923861 Msa0194060:five_prime_UTR 30.0%
! AAAAACCATCTTTTCCACTT+TGG - chr2_1:9921563-9921582 Msa0194060:three_prime_UTR 30.0%
AGATAAAACGGAAAAAGGAA+TGG + chr2_1:9921705-9921724 None:intergenic 30.0%
TGAGAAGATAAAACGGAAAA+AGG + chr2_1:9921710-9921729 None:intergenic 30.0%
TTATCTTCTCAGATTCATTC+AGG - chr2_1:9921719-9921738 Msa0194060:three_prime_UTR 30.0%
!!! AAAATCCCCTTTTTTTGATG+CGG - chr2_1:9921747-9921766 Msa0194060:three_prime_UTR 30.0%
! TTGAATGTAATCACGTGTTT+TGG - chr2_1:9921966-9921985 Msa0194060:intron 30.0%
!!! CTTTCGTACTTTATTTTCAC+TGG - chr2_1:9922396-9922415 Msa0194060:intron 30.0%
!!! CTTTATTTTCACTGGTCATA+TGG - chr2_1:9922404-9922423 Msa0194060:intron 30.0%
! TTATTTTCACTGGTCATATG+GGG - chr2_1:9922406-9922425 Msa0194060:intron 30.0%
ATACAAGTGATACAAATTCC+CGG + chr2_1:9922503-9922522 None:intergenic 30.0%
! TTTATGTTTGCTAGGTACTT+TGG - chr2_1:9922528-9922547 Msa0194060:intron 30.0%
CATCTGAACATTTAGAAAGT+TGG + chr2_1:9922733-9922752 None:intergenic 30.0%
! AGATAATGGTACATATAAGG+AGG + chr2_1:9922836-9922855 None:intergenic 30.0%
AACAATCTACATGCAATTCT+TGG + chr2_1:9922915-9922934 None:intergenic 30.0%
ATTGCATGTAGATTGTTTCA+TGG - chr2_1:9922918-9922937 Msa0194060:intron 30.0%
TTGCATGTAGATTGTTTCAT+GGG - chr2_1:9922919-9922938 Msa0194060:intron 30.0%
CTGTAATACTTTAATCCTAG+GGG + chr2_1:9923082-9923101 None:intergenic 30.0%
GTAAAGCATATGTAAGTGTT+GGG + chr2_1:9923168-9923187 None:intergenic 30.0%
ATCAATATGAACATGAATGC+AGG + chr2_1:9923445-9923464 None:intergenic 30.0%
AATAACAGTAAAATCTAGCG+TGG - chr2_1:9923771-9923790 Msa0194060:five_prime_UTR 30.0%
!!! CTGAGCCTATTTTAATTATG+TGG - chr2_1:9923842-9923861 Msa0194060:five_prime_UTR 30.0%
ATCTTCCGCATCAAAAAAAG+GGG + chr2_1:9921755-9921774 None:intergenic 35.0%
GATCTTCCGCATCAAAAAAA+GGG + chr2_1:9921756-9921775 None:intergenic 35.0%
AGATCTTCCGCATCAAAAAA+AGG + chr2_1:9921757-9921776 None:intergenic 35.0%
TTGAGTGCAAAATGAGAACT+AGG - chr2_1:9921820-9921839 Msa0194060:CDS 35.0%
AACCTATGAACCAAAGACAT+AGG - chr2_1:9921892-9921911 Msa0194060:intron 35.0%
CACAGGACACATGTAATATT+AGG - chr2_1:9921996-9922015 Msa0194060:intron 35.0%
TCGTAGCTGTAATTCTAACA+CGG - chr2_1:9922109-9922128 Msa0194060:intron 35.0%
!!! CATTTTGGGTTGAAAATCGT+AGG - chr2_1:9922164-9922183 Msa0194060:intron 35.0%
TAATCAAATCGAGGGTCAAA+TGG + chr2_1:9922291-9922310 None:intergenic 35.0%
! TATTTTCACTGGTCATATGG+GGG - chr2_1:9922407-9922426 Msa0194060:intron 35.0%
TCAGAAATCCTAATGCTAGA+AGG + chr2_1:9922455-9922474 None:intergenic 35.0%
TACAAGTGATACAAATTCCC+GGG + chr2_1:9922502-9922521 None:intergenic 35.0%
ATGCAATTCTTGGTTAGGAT+CGG + chr2_1:9922905-9922924 None:intergenic 35.0%
TCTACATGCAATTCTTGGTT+AGG + chr2_1:9922910-9922929 None:intergenic 35.0%
! AAAGTATTACAGATGGTAGC+AGG - chr2_1:9923090-9923109 Msa0194060:CDS 35.0%
AAGTATTACAGATGGTAGCA+GGG - chr2_1:9923091-9923110 Msa0194060:CDS 35.0%
GGTAAAGCATATGTAAGTGT+TGG + chr2_1:9923169-9923188 None:intergenic 35.0%
CTTACATATGCTTTACCACT+AGG - chr2_1:9923172-9923191 Msa0194060:CDS 35.0%
!! CGCATATTAGTTTGTAATGG+TGG + chr2_1:9923337-9923356 None:intergenic 35.0%
!!! GTCTTGCTACTTTTTGTTAG+TGG - chr2_1:9923414-9923433 Msa0194060:intron 35.0%
!!! CTGTCACGATGATTTTTTGT+TGG - chr2_1:9923469-9923488 Msa0194060:intron 35.0%
ATCTTCCGCATCAAAAAAAG+GGG + chr2_1:9921755-9921774 None:intergenic 35.0%
GATCTTCCGCATCAAAAAAA+GGG + chr2_1:9921756-9921775 None:intergenic 35.0%
AGATCTTCCGCATCAAAAAA+AGG + chr2_1:9921757-9921776 None:intergenic 35.0%
TTGAGTGCAAAATGAGAACT+AGG - chr2_1:9921820-9921839 Msa0194060:CDS 35.0%
AACCTATGAACCAAAGACAT+AGG - chr2_1:9921892-9921911 Msa0194060:intron 35.0%
CACAGGACACATGTAATATT+AGG - chr2_1:9921996-9922015 Msa0194060:intron 35.0%
TCGTAGCTGTAATTCTAACA+CGG - chr2_1:9922109-9922128 Msa0194060:intron 35.0%
!!! CATTTTGGGTTGAAAATCGT+AGG - chr2_1:9922164-9922183 Msa0194060:intron 35.0%
TAATCAAATCGAGGGTCAAA+TGG + chr2_1:9922291-9922310 None:intergenic 35.0%
! TATTTTCACTGGTCATATGG+GGG - chr2_1:9922407-9922426 Msa0194060:intron 35.0%
TCAGAAATCCTAATGCTAGA+AGG + chr2_1:9922455-9922474 None:intergenic 35.0%
TACAAGTGATACAAATTCCC+GGG + chr2_1:9922502-9922521 None:intergenic 35.0%
ATGCAATTCTTGGTTAGGAT+CGG + chr2_1:9922905-9922924 None:intergenic 35.0%
TCTACATGCAATTCTTGGTT+AGG + chr2_1:9922910-9922929 None:intergenic 35.0%
! AAAGTATTACAGATGGTAGC+AGG - chr2_1:9923090-9923109 Msa0194060:CDS 35.0%
AAGTATTACAGATGGTAGCA+GGG - chr2_1:9923091-9923110 Msa0194060:CDS 35.0%
GGTAAAGCATATGTAAGTGT+TGG + chr2_1:9923169-9923188 None:intergenic 35.0%
CTTACATATGCTTTACCACT+AGG - chr2_1:9923172-9923191 Msa0194060:CDS 35.0%
!! CGCATATTAGTTTGTAATGG+TGG + chr2_1:9923337-9923356 None:intergenic 35.0%
!!! GTCTTGCTACTTTTTGTTAG+TGG - chr2_1:9923414-9923433 Msa0194060:intron 35.0%
!!! CTGTCACGATGATTTTTTGT+TGG - chr2_1:9923469-9923488 Msa0194060:intron 35.0%
CAAAGCCAAAGTGGAAAAGA+TGG + chr2_1:9921571-9921590 None:intergenic 40.0%
AACGGAAAAAGGAATGGATG+AGG + chr2_1:9921699-9921718 None:intergenic 40.0%
! TGCCTATGTCTTTGGTTCAT+AGG + chr2_1:9921897-9921916 None:intergenic 40.0%
CAATGTTGTGCCTATGTCTT+TGG + chr2_1:9921905-9921924 None:intergenic 40.0%
ATTTGTATCGCTTGCACGAT+GGG + chr2_1:9921929-9921948 None:intergenic 40.0%
AATTTGTATCGCTTGCACGA+TGG + chr2_1:9921930-9921949 None:intergenic 40.0%
CGTAGCTGTAATTCTAACAC+GGG - chr2_1:9922110-9922129 Msa0194060:intron 40.0%
AACGTAATCATCCTCATCTG+TGG + chr2_1:9922253-9922272 None:intergenic 40.0%
ACAGATGAGGATGATTACGT+TGG - chr2_1:9922252-9922271 Msa0194060:intron 40.0%
! AAACAACAGGAAGAGTGCAA+GGG + chr2_1:9922355-9922374 None:intergenic 40.0%
!! TTCCTGTTGTTTCTTGGTAC+CGG - chr2_1:9922363-9922382 Msa0194060:intron 40.0%
GTACGAAAGAAACAGAAGTC+CGG + chr2_1:9922385-9922404 None:intergenic 40.0%
! ATTTTCACTGGTCATATGGG+GGG - chr2_1:9922408-9922427 Msa0194060:intron 40.0%
AAAGTTGGAGTCCAATATGC+TGG + chr2_1:9922718-9922737 None:intergenic 40.0%
TGCACATGATAGATAGGTCT+AGG - chr2_1:9922997-9923016 Msa0194060:CDS 40.0%
!! AGGGGCATATTTTAAGTGGT+GGG + chr2_1:9923064-9923083 None:intergenic 40.0%
!! TAGGGGCATATTTTAAGTGG+TGG + chr2_1:9923065-9923084 None:intergenic 40.0%
ACCACTTAAAATATGCCCCT+AGG - chr2_1:9923064-9923083 Msa0194060:CDS 40.0%
!! TCCTAGGGGCATATTTTAAG+TGG + chr2_1:9923068-9923087 None:intergenic 40.0%
AGTATTACAGATGGTAGCAG+GGG - chr2_1:9923092-9923111 Msa0194060:CDS 40.0%
!! AAGCATATGTAAGTGTTGGG+TGG + chr2_1:9923165-9923184 None:intergenic 40.0%
TTACCACTAGGCTATGTTCT+TGG - chr2_1:9923184-9923203 Msa0194060:CDS 40.0%
TACCACTAGGCTATGTTCTT+GGG - chr2_1:9923185-9923204 Msa0194060:CDS 40.0%
AGTTATTGTTGAAGTGGGTC+AGG - chr2_1:9923257-9923276 Msa0194060:five_prime_UTR 40.0%
GAGAAAATGGGCATGGAATA+AGG - chr2_1:9923279-9923298 Msa0194060:five_prime_UTR 40.0%
GATCTCCATCGCTAGTATTA+AGG - chr2_1:9923308-9923327 Msa0194060:five_prime_UTR 40.0%
CTCATCTGCTCTAGTAATCA+GGG + chr2_1:9923602-9923621 None:intergenic 40.0%
ACTCATCTGCTCTAGTAATC+AGG + chr2_1:9923603-9923622 None:intergenic 40.0%
! AAATCTGATCACGACTTGGA+GGG + chr2_1:9923630-9923649 None:intergenic 40.0%
TCCAAGTCGTGATCAGATTT+CGG - chr2_1:9923630-9923649 Msa0194060:intron 40.0%
ACTGTACTTTCCTGTCACAT+TGG - chr2_1:9923877-9923896 Msa0194060:five_prime_UTR 40.0%
CAAAGCCAAAGTGGAAAAGA+TGG + chr2_1:9921571-9921590 None:intergenic 40.0%
AACGGAAAAAGGAATGGATG+AGG + chr2_1:9921699-9921718 None:intergenic 40.0%
! TGCCTATGTCTTTGGTTCAT+AGG + chr2_1:9921897-9921916 None:intergenic 40.0%
CAATGTTGTGCCTATGTCTT+TGG + chr2_1:9921905-9921924 None:intergenic 40.0%
ATTTGTATCGCTTGCACGAT+GGG + chr2_1:9921929-9921948 None:intergenic 40.0%
AATTTGTATCGCTTGCACGA+TGG + chr2_1:9921930-9921949 None:intergenic 40.0%
CGTAGCTGTAATTCTAACAC+GGG - chr2_1:9922110-9922129 Msa0194060:intron 40.0%
AACGTAATCATCCTCATCTG+TGG + chr2_1:9922253-9922272 None:intergenic 40.0%
ACAGATGAGGATGATTACGT+TGG - chr2_1:9922252-9922271 Msa0194060:intron 40.0%
! AAACAACAGGAAGAGTGCAA+GGG + chr2_1:9922355-9922374 None:intergenic 40.0%
!! TTCCTGTTGTTTCTTGGTAC+CGG - chr2_1:9922363-9922382 Msa0194060:intron 40.0%
GTACGAAAGAAACAGAAGTC+CGG + chr2_1:9922385-9922404 None:intergenic 40.0%
! ATTTTCACTGGTCATATGGG+GGG - chr2_1:9922408-9922427 Msa0194060:intron 40.0%
AAAGTTGGAGTCCAATATGC+TGG + chr2_1:9922718-9922737 None:intergenic 40.0%
TGCACATGATAGATAGGTCT+AGG - chr2_1:9922997-9923016 Msa0194060:CDS 40.0%
!! AGGGGCATATTTTAAGTGGT+GGG + chr2_1:9923064-9923083 None:intergenic 40.0%
!! TAGGGGCATATTTTAAGTGG+TGG + chr2_1:9923065-9923084 None:intergenic 40.0%
ACCACTTAAAATATGCCCCT+AGG - chr2_1:9923064-9923083 Msa0194060:CDS 40.0%
!! TCCTAGGGGCATATTTTAAG+TGG + chr2_1:9923068-9923087 None:intergenic 40.0%
AGTATTACAGATGGTAGCAG+GGG - chr2_1:9923092-9923111 Msa0194060:CDS 40.0%
!! AAGCATATGTAAGTGTTGGG+TGG + chr2_1:9923165-9923184 None:intergenic 40.0%
TTACCACTAGGCTATGTTCT+TGG - chr2_1:9923184-9923203 Msa0194060:CDS 40.0%
TACCACTAGGCTATGTTCTT+GGG - chr2_1:9923185-9923204 Msa0194060:CDS 40.0%
AGTTATTGTTGAAGTGGGTC+AGG - chr2_1:9923257-9923276 Msa0194060:five_prime_UTR 40.0%
GAGAAAATGGGCATGGAATA+AGG - chr2_1:9923279-9923298 Msa0194060:five_prime_UTR 40.0%
GATCTCCATCGCTAGTATTA+AGG - chr2_1:9923308-9923327 Msa0194060:five_prime_UTR 40.0%
CTCATCTGCTCTAGTAATCA+GGG + chr2_1:9923602-9923621 None:intergenic 40.0%
ACTCATCTGCTCTAGTAATC+AGG + chr2_1:9923603-9923622 None:intergenic 40.0%
! AAATCTGATCACGACTTGGA+GGG + chr2_1:9923630-9923649 None:intergenic 40.0%
TCCAAGTCGTGATCAGATTT+CGG - chr2_1:9923630-9923649 Msa0194060:intron 40.0%
ACTGTACTTTCCTGTCACAT+TGG - chr2_1:9923877-9923896 Msa0194060:five_prime_UTR 40.0%
!! TTTTCTGGCGACTTGGAGTT+CGG + chr2_1:9921618-9921637 None:intergenic 45.0%
!!! ACTTTTTCCGGTGTTTCTGG+CGG + chr2_1:9921663-9921682 None:intergenic 45.0%
GGAATGGATGAGGAAAACCT+GGG + chr2_1:9921689-9921708 None:intergenic 45.0%
AGGAATGGATGAGGAAAACC+TGG + chr2_1:9921690-9921709 None:intergenic 45.0%
!!! CGTGTTTTGGTTTCGTACAC+AGG - chr2_1:9921979-9921998 Msa0194060:intron 45.0%
TACAGCTACGACTAAGCACA+AGG + chr2_1:9922100-9922119 None:intergenic 45.0%
GCTGTGTTTATTTGAGCCGA+GGG - chr2_1:9922132-9922151 Msa0194060:intron 45.0%
CTGTGTTTATTTGAGCCGAG+GGG - chr2_1:9922133-9922152 Msa0194060:intron 45.0%
TGTGTTTATTTGAGCCGAGG+GGG - chr2_1:9922134-9922153 Msa0194060:intron 45.0%
GAAAATCGTAGGAGCAAGCA+AGG - chr2_1:9922175-9922194 Msa0194060:intron 45.0%
TCGGCGTGTAATCAAATCGA+GGG + chr2_1:9922299-9922318 None:intergenic 45.0%
GCAAGGGCAATAGATTTCCA+GGG + chr2_1:9922339-9922358 None:intergenic 45.0%
TGCAAGGGCAATAGATTTCC+AGG + chr2_1:9922340-9922359 None:intergenic 45.0%
! GAAACAACAGGAAGAGTGCA+AGG + chr2_1:9922356-9922375 None:intergenic 45.0%
!! GCACTCTTCCTGTTGTTTCT+TGG - chr2_1:9922357-9922376 Msa0194060:intron 45.0%
GCTTATGGCCTTCTAGCATT+AGG - chr2_1:9922444-9922463 Msa0194060:intron 45.0%
GTGTACACGGGTTTGAACAT+GGG - chr2_1:9923129-9923148 Msa0194060:CDS 45.0%
!! TGTAAGTGTTGGGTGGAAAC+CGG + chr2_1:9923158-9923177 None:intergenic 45.0%
ACCACTAGGCTATGTTCTTG+GGG - chr2_1:9923186-9923205 Msa0194060:CDS 45.0%
TGAAGTGGGTCAGGAGAAAA+TGG - chr2_1:9923266-9923285 Msa0194060:five_prime_UTR 45.0%
GAAGTGGGTCAGGAGAAAAT+GGG - chr2_1:9923267-9923286 Msa0194060:five_prime_UTR 45.0%
AATGGGCATGGAATAAGGAC+AGG - chr2_1:9923284-9923303 Msa0194060:five_prime_UTR 45.0%
GGTGACCTTAATACTAGCGA+TGG + chr2_1:9923316-9923335 None:intergenic 45.0%
GGCAGAAAAGCGATAACCTT+TGG + chr2_1:9923577-9923596 None:intergenic 45.0%
TCTGCTCTAGTAATCAGGGA+TGG + chr2_1:9923598-9923617 None:intergenic 45.0%
! GAAATCTGATCACGACTTGG+AGG + chr2_1:9923631-9923650 None:intergenic 45.0%
ACCGAAATCTGATCACGACT+TGG + chr2_1:9923634-9923653 None:intergenic 45.0%
CCTTGACAAACCAATGTGAC+AGG + chr2_1:9923890-9923909 None:intergenic 45.0%
!! CCTGTCACATTGGTTTGTCA+AGG - chr2_1:9923887-9923906 Msa0194060:five_prime_UTR 45.0%
!! TTTTCTGGCGACTTGGAGTT+CGG + chr2_1:9921618-9921637 None:intergenic 45.0%
!!! ACTTTTTCCGGTGTTTCTGG+CGG + chr2_1:9921663-9921682 None:intergenic 45.0%
GGAATGGATGAGGAAAACCT+GGG + chr2_1:9921689-9921708 None:intergenic 45.0%
AGGAATGGATGAGGAAAACC+TGG + chr2_1:9921690-9921709 None:intergenic 45.0%
!!! CGTGTTTTGGTTTCGTACAC+AGG - chr2_1:9921979-9921998 Msa0194060:intron 45.0%
TACAGCTACGACTAAGCACA+AGG + chr2_1:9922100-9922119 None:intergenic 45.0%
GCTGTGTTTATTTGAGCCGA+GGG - chr2_1:9922132-9922151 Msa0194060:intron 45.0%
CTGTGTTTATTTGAGCCGAG+GGG - chr2_1:9922133-9922152 Msa0194060:intron 45.0%
TGTGTTTATTTGAGCCGAGG+GGG - chr2_1:9922134-9922153 Msa0194060:intron 45.0%
GAAAATCGTAGGAGCAAGCA+AGG - chr2_1:9922175-9922194 Msa0194060:intron 45.0%
TCGGCGTGTAATCAAATCGA+GGG + chr2_1:9922299-9922318 None:intergenic 45.0%
GCAAGGGCAATAGATTTCCA+GGG + chr2_1:9922339-9922358 None:intergenic 45.0%
TGCAAGGGCAATAGATTTCC+AGG + chr2_1:9922340-9922359 None:intergenic 45.0%
! GAAACAACAGGAAGAGTGCA+AGG + chr2_1:9922356-9922375 None:intergenic 45.0%
!! GCACTCTTCCTGTTGTTTCT+TGG - chr2_1:9922357-9922376 Msa0194060:intron 45.0%
GCTTATGGCCTTCTAGCATT+AGG - chr2_1:9922444-9922463 Msa0194060:intron 45.0%
GTGTACACGGGTTTGAACAT+GGG - chr2_1:9923129-9923148 Msa0194060:CDS 45.0%
!! TGTAAGTGTTGGGTGGAAAC+CGG + chr2_1:9923158-9923177 None:intergenic 45.0%
ACCACTAGGCTATGTTCTTG+GGG - chr2_1:9923186-9923205 Msa0194060:CDS 45.0%
TGAAGTGGGTCAGGAGAAAA+TGG - chr2_1:9923266-9923285 Msa0194060:five_prime_UTR 45.0%
GAAGTGGGTCAGGAGAAAAT+GGG - chr2_1:9923267-9923286 Msa0194060:five_prime_UTR 45.0%
AATGGGCATGGAATAAGGAC+AGG - chr2_1:9923284-9923303 Msa0194060:five_prime_UTR 45.0%
GGTGACCTTAATACTAGCGA+TGG + chr2_1:9923316-9923335 None:intergenic 45.0%
GGCAGAAAAGCGATAACCTT+TGG + chr2_1:9923577-9923596 None:intergenic 45.0%
TCTGCTCTAGTAATCAGGGA+TGG + chr2_1:9923598-9923617 None:intergenic 45.0%
! GAAATCTGATCACGACTTGG+AGG + chr2_1:9923631-9923650 None:intergenic 45.0%
ACCGAAATCTGATCACGACT+TGG + chr2_1:9923634-9923653 None:intergenic 45.0%
CCTTGACAAACCAATGTGAC+AGG + chr2_1:9923890-9923909 None:intergenic 45.0%
!! CCTGTCACATTGGTTTGTCA+AGG - chr2_1:9923887-9923906 Msa0194060:five_prime_UTR 45.0%
TTATCAGCCGCCAGAAACAC+CGG - chr2_1:9921653-9921672 Msa0194060:three_prime_UTR 50.0%
!! CGGACTTTTTCCGGTGTTTC+TGG + chr2_1:9921666-9921685 None:intergenic 50.0%
!! AAACCTGGGCGGACTTTTTC+CGG + chr2_1:9921675-9921694 None:intergenic 50.0%
ATGGATGAGGAAAACCTGGG+CGG + chr2_1:9921686-9921705 None:intergenic 50.0%
GGCTGTGTTTATTTGAGCCG+AGG - chr2_1:9922131-9922150 Msa0194060:intron 50.0%
ATCCTCATCTGTGGCAAGAG+GGG + chr2_1:9922244-9922263 None:intergenic 50.0%
CATCCTCATCTGTGGCAAGA+GGG + chr2_1:9922245-9922264 None:intergenic 50.0%
TCATCCTCATCTGTGGCAAG+AGG + chr2_1:9922246-9922265 None:intergenic 50.0%
CTCGGCGTGTAATCAAATCG+AGG + chr2_1:9922300-9922319 None:intergenic 50.0%
TTTCCAGGGAACTCTGTCCA+AGG + chr2_1:9922325-9922344 None:intergenic 50.0%
GTCCGGTACCAAGAAACAAC+AGG + chr2_1:9922368-9922387 None:intergenic 50.0%
GGAGAACGCTCTCAAGCTTA+TGG - chr2_1:9922429-9922448 Msa0194060:intron 50.0%
GGATTTCTGAGCTTTCTCCC+AGG - chr2_1:9922465-9922484 Msa0194060:intron 50.0%
TAGCAGGGGAGCAGGAAAAT+GGG - chr2_1:9923106-9923125 Msa0194060:CDS 50.0%
GCAGGAAAATGGGGTGTACA+CGG - chr2_1:9923116-9923135 Msa0194060:CDS 50.0%
CAGGAAAATGGGGTGTACAC+GGG - chr2_1:9923117-9923136 Msa0194060:CDS 50.0%
GGTGTACACGGGTTTGAACA+TGG - chr2_1:9923128-9923147 Msa0194060:CDS 50.0%
!! GTAAGTGTTGGGTGGAAACC+GGG + chr2_1:9923157-9923176 None:intergenic 50.0%
! CTCGACTTGCGTATTATGCC+TGG - chr2_1:9923544-9923563 Msa0194060:intron 50.0%
CTTGCGTATTATGCCTGGAG+AGG - chr2_1:9923549-9923568 Msa0194060:intron 50.0%
ATAACCTTTGGCACCTCTCC+AGG + chr2_1:9923565-9923584 None:intergenic 50.0%
TTATCAGCCGCCAGAAACAC+CGG - chr2_1:9921653-9921672 Msa0194060:three_prime_UTR 50.0%
!! CGGACTTTTTCCGGTGTTTC+TGG + chr2_1:9921666-9921685 None:intergenic 50.0%
!! AAACCTGGGCGGACTTTTTC+CGG + chr2_1:9921675-9921694 None:intergenic 50.0%
ATGGATGAGGAAAACCTGGG+CGG + chr2_1:9921686-9921705 None:intergenic 50.0%
GGCTGTGTTTATTTGAGCCG+AGG - chr2_1:9922131-9922150 Msa0194060:intron 50.0%
ATCCTCATCTGTGGCAAGAG+GGG + chr2_1:9922244-9922263 None:intergenic 50.0%
CATCCTCATCTGTGGCAAGA+GGG + chr2_1:9922245-9922264 None:intergenic 50.0%
TCATCCTCATCTGTGGCAAG+AGG + chr2_1:9922246-9922265 None:intergenic 50.0%
CTCGGCGTGTAATCAAATCG+AGG + chr2_1:9922300-9922319 None:intergenic 50.0%
TTTCCAGGGAACTCTGTCCA+AGG + chr2_1:9922325-9922344 None:intergenic 50.0%
GTCCGGTACCAAGAAACAAC+AGG + chr2_1:9922368-9922387 None:intergenic 50.0%
GGAGAACGCTCTCAAGCTTA+TGG - chr2_1:9922429-9922448 Msa0194060:intron 50.0%
GGATTTCTGAGCTTTCTCCC+AGG - chr2_1:9922465-9922484 Msa0194060:intron 50.0%
TAGCAGGGGAGCAGGAAAAT+GGG - chr2_1:9923106-9923125 Msa0194060:CDS 50.0%
GCAGGAAAATGGGGTGTACA+CGG - chr2_1:9923116-9923135 Msa0194060:CDS 50.0%
CAGGAAAATGGGGTGTACAC+GGG - chr2_1:9923117-9923136 Msa0194060:CDS 50.0%
GGTGTACACGGGTTTGAACA+TGG - chr2_1:9923128-9923147 Msa0194060:CDS 50.0%
!! GTAAGTGTTGGGTGGAAACC+GGG + chr2_1:9923157-9923176 None:intergenic 50.0%
! CTCGACTTGCGTATTATGCC+TGG - chr2_1:9923544-9923563 Msa0194060:intron 50.0%
CTTGCGTATTATGCCTGGAG+AGG - chr2_1:9923549-9923568 Msa0194060:intron 50.0%
ATAACCTTTGGCACCTCTCC+AGG + chr2_1:9923565-9923584 None:intergenic 50.0%
AAGTCGCCAGAAAACGCAGC+CGG - chr2_1:9921624-9921643 Msa0194060:three_prime_UTR 55.0%
! TGGCGGCTGATAACGAACTC+CGG + chr2_1:9921646-9921665 None:intergenic 55.0%
TTATTTGAGCCGAGGGGGCT+CGG - chr2_1:9922139-9922158 Msa0194060:intron 55.0%
CAAAATGATCCGAGCCCCCT+CGG + chr2_1:9922151-9922170 None:intergenic 55.0%
! GAGGGGGCTCGGATCATTTT+GGG - chr2_1:9922150-9922169 Msa0194060:intron 55.0%
TGATTACACGCCGAGAGCCT+TGG - chr2_1:9922305-9922324 Msa0194060:intron 55.0%
GGAACTCTGTCCAAGGCTCT+CGG + chr2_1:9922318-9922337 None:intergenic 55.0%
TCCCAGGTACGTTGAAGTCC+CGG - chr2_1:9922481-9922500 Msa0194060:intron 55.0%
GTAGCAGGGGAGCAGGAAAA+TGG - chr2_1:9923105-9923124 Msa0194060:CDS 55.0%
AGCAGGGGAGCAGGAAAATG+GGG - chr2_1:9923107-9923126 Msa0194060:CDS 55.0%
GCCCCAAGAACATAGCCTAG+TGG + chr2_1:9923190-9923209 None:intergenic 55.0%
GGGTCAGGAGAAAATGGGCA+TGG - chr2_1:9923272-9923291 Msa0194060:five_prime_UTR 55.0%
!! TATGCCTGGAGAGGTGCCAA+AGG - chr2_1:9923558-9923577 Msa0194060:intron 55.0%
AAGTCGCCAGAAAACGCAGC+CGG - chr2_1:9921624-9921643 Msa0194060:three_prime_UTR 55.0%
! TGGCGGCTGATAACGAACTC+CGG + chr2_1:9921646-9921665 None:intergenic 55.0%
TTATTTGAGCCGAGGGGGCT+CGG - chr2_1:9922139-9922158 Msa0194060:intron 55.0%
CAAAATGATCCGAGCCCCCT+CGG + chr2_1:9922151-9922170 None:intergenic 55.0%
! GAGGGGGCTCGGATCATTTT+GGG - chr2_1:9922150-9922169 Msa0194060:intron 55.0%
TGATTACACGCCGAGAGCCT+TGG - chr2_1:9922305-9922324 Msa0194060:intron 55.0%
GGAACTCTGTCCAAGGCTCT+CGG + chr2_1:9922318-9922337 None:intergenic 55.0%
TCCCAGGTACGTTGAAGTCC+CGG - chr2_1:9922481-9922500 Msa0194060:intron 55.0%
GTAGCAGGGGAGCAGGAAAA+TGG - chr2_1:9923105-9923124 Msa0194060:CDS 55.0%
AGCAGGGGAGCAGGAAAATG+GGG - chr2_1:9923107-9923126 Msa0194060:CDS 55.0%
GCCCCAAGAACATAGCCTAG+TGG + chr2_1:9923190-9923209 None:intergenic 55.0%
GGGTCAGGAGAAAATGGGCA+TGG - chr2_1:9923272-9923291 Msa0194060:five_prime_UTR 55.0%
!! TATGCCTGGAGAGGTGCCAA+AGG - chr2_1:9923558-9923577 Msa0194060:intron 55.0%
!! GGCTGCGTTTTCTGGCGACT+TGG + chr2_1:9921625-9921644 None:intergenic 60.0%
! CGAACTCCGGCTGCGTTTTC+TGG + chr2_1:9921633-9921652 None:intergenic 60.0%
ACACCGGAAAAAGTCCGCCC+AGG - chr2_1:9921669-9921688 Msa0194060:three_prime_UTR 60.0%
! CGAGGGGGCTCGGATCATTT+TGG - chr2_1:9922149-9922168 Msa0194060:intron 60.0%
CACCCCTCTTGCCACAGATG+AGG - chr2_1:9922239-9922258 Msa0194060:intron 60.0%
GAGCCTTGGACAGAGTTCCC+TGG - chr2_1:9922319-9922338 Msa0194060:intron 60.0%
CCCGGGACTTCAACGTACCT+GGG + chr2_1:9922485-9922504 None:intergenic 60.0%
CCCAGGTACGTTGAAGTCCC+GGG - chr2_1:9922482-9922501 Msa0194060:intron 60.0%
TCCCGGGACTTCAACGTACC+TGG + chr2_1:9922486-9922505 None:intergenic 60.0%
ACAGATGGTAGCAGGGGAGC+AGG - chr2_1:9923098-9923117 Msa0194060:CDS 60.0%
CGGGTTTGAACATGGGCTCC+CGG - chr2_1:9923136-9923155 Msa0194060:CDS 60.0%
!! GGCTGCGTTTTCTGGCGACT+TGG + chr2_1:9921625-9921644 None:intergenic 60.0%
! CGAACTCCGGCTGCGTTTTC+TGG + chr2_1:9921633-9921652 None:intergenic 60.0%
ACACCGGAAAAAGTCCGCCC+AGG - chr2_1:9921669-9921688 Msa0194060:three_prime_UTR 60.0%
! CGAGGGGGCTCGGATCATTT+TGG - chr2_1:9922149-9922168 Msa0194060:intron 60.0%
CACCCCTCTTGCCACAGATG+AGG - chr2_1:9922239-9922258 Msa0194060:intron 60.0%
GAGCCTTGGACAGAGTTCCC+TGG - chr2_1:9922319-9922338 Msa0194060:intron 60.0%
CCCGGGACTTCAACGTACCT+GGG + chr2_1:9922485-9922504 None:intergenic 60.0%
CCCAGGTACGTTGAAGTCCC+GGG - chr2_1:9922482-9922501 Msa0194060:intron 60.0%
TCCCGGGACTTCAACGTACC+TGG + chr2_1:9922486-9922505 None:intergenic 60.0%
ACAGATGGTAGCAGGGGAGC+AGG - chr2_1:9923098-9923117 Msa0194060:CDS 60.0%
CGGGTTTGAACATGGGCTCC+CGG - chr2_1:9923136-9923155 Msa0194060:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 9921509 9923920 9921509 ID=Msa0194060;Name=Msa0194060
chr2_1 mRNA 9921509 9923920 9921509 ID=Msa0194060-mRNA-1;Parent=Msa0194060;Name=Msa0194060-mRNA-1;_AED=0.28;_eAED=0.28;_QI=310|1|1|1|0.5|0.33|3|309|116
chr2_1 exon 9921509 9921897 9921509 ID=Msa0194060-mRNA-1:exon:4545;Parent=Msa0194060-mRNA-1
chr2_1 exon 9922943 9923341 9922943 ID=Msa0194060-mRNA-1:exon:4544;Parent=Msa0194060-mRNA-1
chr2_1 exon 9923739 9923920 9923739 ID=Msa0194060-mRNA-1:exon:4543;Parent=Msa0194060-mRNA-1
chr2_1 five_prime_UTR 9923739 9923920 9923739 ID=Msa0194060-mRNA-1:five_prime_utr;Parent=Msa0194060-mRNA-1
chr2_1 five_prime_UTR 9923214 9923341 9923214 ID=Msa0194060-mRNA-1:five_prime_utr;Parent=Msa0194060-mRNA-1
chr2_1 CDS 9922943 9923213 9922943 ID=Msa0194060-mRNA-1:cds;Parent=Msa0194060-mRNA-1
chr2_1 CDS 9921818 9921897 9921818 ID=Msa0194060-mRNA-1:cds;Parent=Msa0194060-mRNA-1
chr2_1 three_prime_UTR 9921509 9921817 9921509 ID=Msa0194060-mRNA-1:three_prime_utr;Parent=Msa0194060-mRNA-1
Gene Sequence

>Msa0194060

ATGGCAACTAGACGTGTTCGTTACACCCCTCTTGCCACAGATGAGGATGATTACGTTGGTAATCAAACTAGACCATTTGACCCTCGATTTGATTACACGCCGAGAGCCTTGGACAGAGTTCCCTGGAAATCTATTGCCCTTGCACTCTTCCTGTTGTTTCTTGGTACCGGACTTCTGTTTCTTTCGTACTTTATTTTCACTGGTCATATGGGGGGAGAACGCTCTCAAGCTTATGGCCTTCTAGCATTAGGATTTCTGAGCTTTCTCCCAGGATTTTATGAGACTCGACTTGCGTATTATGCCTGGAGAGGTGCCAAAGGTTATCGCTTTTCTGCCATCCCTGATTACTAG
Protein sequence

>Msa0194060

MATRRVRYTPLATDEDDYVGNQTRPFDPRFDYTPRALDRVPWKSIALALFLLFLGTGLLFLSYFIFTGHMGGERSQAYGLLALGFLSFLPGFYETRLAYYAWRGAKGYRFSAIPDY*