Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0167660 | XP_013468411.1 | 93.522 | 494 | 11 | 3 | 1 | 494 | 1 | 473 | 0.0 | 931 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0167660 | sp|Q8L3X9|KASM_ARATH | 74.501 | 451 | 95 | 2 | 39 | 489 | 29 | 459 | 0.0 | 681 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0167660 | A0A072VM15 | 93.522 | 494 | 11 | 3 | 1 | 494 | 1 | 473 | 0.0 | 931 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0073820 | Msa0167660 | 0.800841 | 1.192947e-48 | -8.615850e-47 |
| Msa0074970 | Msa0167660 | 0.807911 | 4.011371e-50 | -8.615850e-47 |
| Msa0167660 | Msa0367370 | 0.804695 | 1.909075e-49 | -8.615850e-47 |
| Msa0167660 | Msa1177240 | 0.805255 | 1.458033e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0167660 | MtrunA17_Chr1g0183091 | 93.522 | 494 | 11 | 3 | 1 | 494 | 1 | 473 | 0.0 | 931 |
| Msa0167660 | MtrunA17_Chr4g0070171 | 39.574 | 470 | 226 | 10 | 27 | 489 | 70 | 488 | 3.18e-89 | 281 |
| Msa0167660 | MtrunA17_Chr2g0301361 | 38.816 | 456 | 235 | 8 | 36 | 489 | 72 | 485 | 9.56e-88 | 277 |
| Msa0167660 | MtrunA17_Chr1g0204841 | 36.364 | 473 | 253 | 8 | 19 | 489 | 42 | 468 | 1.13e-87 | 276 |
| Msa0167660 | MtrunA17_Chr8g0388511 | 36.520 | 408 | 216 | 6 | 41 | 446 | 17 | 383 | 1.13e-78 | 251 |
| Msa0167660 | MtrunA17_Chr4g0052121 | 33.546 | 471 | 263 | 11 | 22 | 489 | 39 | 462 | 3.59e-60 | 204 |
| Msa0167660 | MtrunA17_Chr8g0388561 | 40.526 | 190 | 89 | 5 | 300 | 489 | 1 | 166 | 2.81e-33 | 124 |
| Msa0167660 | MtrunA17_Chr8g0388551 | 27.381 | 252 | 112 | 6 | 41 | 292 | 37 | 217 | 3.56e-23 | 100 |
| Msa0167660 | MtrunA17_Chr8g0388531 | 28.856 | 201 | 121 | 3 | 41 | 239 | 45 | 225 | 6.78e-22 | 94.4 |
| Msa0167660 | MtrunA17_Chr8g0388541 | 51.351 | 74 | 35 | 1 | 244 | 317 | 1 | 73 | 5.90e-14 | 68.9 |
| Msa0167660 | MtrunA17_Chr8g0388541 | 50.685 | 73 | 33 | 1 | 374 | 446 | 55 | 124 | 9.07e-13 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0167660 | AT2G04540.1 | 74.501 | 451 | 95 | 2 | 39 | 489 | 29 | 459 | 0.0 | 681 |
| Msa0167660 | AT5G46290.1 | 37.037 | 486 | 257 | 9 | 7 | 489 | 30 | 469 | 7.35e-89 | 280 |
| Msa0167660 | AT5G46290.3 | 36.056 | 502 | 256 | 10 | 7 | 489 | 30 | 485 | 2.33e-86 | 274 |
| Msa0167660 | AT1G74960.1 | 37.634 | 465 | 242 | 8 | 29 | 489 | 118 | 538 | 1.26e-83 | 268 |
| Msa0167660 | AT1G74960.3 | 37.634 | 465 | 242 | 8 | 29 | 489 | 118 | 538 | 1.26e-83 | 268 |
| Msa0167660 | AT1G74960.2 | 37.634 | 465 | 242 | 8 | 29 | 489 | 118 | 538 | 1.26e-83 | 268 |
| Msa0167660 | AT5G46290.2 | 32.922 | 486 | 222 | 11 | 7 | 489 | 30 | 414 | 2.45e-63 | 212 |
Find 151 sgRNAs with CRISPR-Local
Find 459 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGAACATCGCGAAGGGTTT+TGG | 0.152340 | 1_4:-49608861 | Msa0167660:CDS |
| ACAAGGCCAGATTCTGTATT+TGG | 0.163247 | 1_4:-49603571 | Msa0167660:CDS |
| GTGAATTCAACCACGAAATT+TGG | 0.170597 | 1_4:-49608462 | Msa0167660:CDS |
| ATAAATATTTGGCTAAAATA+TGG | 0.209465 | 1_4:-49603088 | Msa0167660:three_prime_UTR |
| CGAAATTTGGCTTAATTCTA+AGG | 0.209556 | 1_4:-49608449 | Msa0167660:intron |
| ACGAATCTCTGCATAGATTT+TGG | 0.215851 | 1_4:+49605945 | None:intergenic |
| TCTGAAATGAAATAAATATT+TGG | 0.243689 | 1_4:-49603099 | Msa0167660:three_prime_UTR |
| GCAATGAGAATGATTCAATT+TGG | 0.244331 | 1_4:-49606521 | Msa0167660:CDS |
| GCAGTCACTGCTTGTGCTAC+TGG | 0.246599 | 1_4:-49606563 | Msa0167660:CDS |
| TGATGATATGCTTCGGTAAA+TGG | 0.253541 | 1_4:+49608835 | None:intergenic |
| GATCTATTAAAACGTCTTAC+AGG | 0.263339 | 1_4:+49602972 | None:intergenic |
| ACTTGGAACCAACTAATTAA+TGG | 0.270968 | 1_4:-49608616 | Msa0167660:CDS |
| AAGCTCTTAAAGATTCTAAT+TGG | 0.273978 | 1_4:-49607625 | Msa0167660:CDS |
| CAATGAGAATGATTCAATTT+GGG | 0.278917 | 1_4:-49606520 | Msa0167660:CDS |
| TTTGACATAGCTACTCTAAT+TGG | 0.296884 | 1_4:+49603511 | None:intergenic |
| GTAGCTATGTCAAACTCTTT+TGG | 0.297068 | 1_4:-49603502 | Msa0167660:CDS |
| ATTGATGCATTATCAATTGC+AGG | 0.313043 | 1_4:-49606458 | Msa0167660:CDS |
| GGCCACGTTAGCATGAAATA+TGG | 0.325924 | 1_4:-49607197 | Msa0167660:CDS |
| TGGGGTAAGGGCACTGCGTT+TGG | 0.333218 | 1_4:-49608587 | Msa0167660:CDS |
| CTTGTTAAATTAAGAGTTAA+TGG | 0.337796 | 1_4:+49603589 | None:intergenic |
| GGTCATCTCCTTGGTGCTGC+TGG | 0.343211 | 1_4:-49603797 | Msa0167660:CDS |
| GCTAGCATGGTCAGAGAATA+TGG | 0.347485 | 1_4:+49604065 | None:intergenic |
| TGATGGGAGAGGTGCCATTC+TGG | 0.350310 | 1_4:-49605790 | Msa0167660:CDS |
| TCATGCTGAGGAGAATTTAA+TGG | 0.353784 | 1_4:-49603372 | Msa0167660:three_prime_UTR |
| GAAGAAACTAAGGGTGTGTT+TGG | 0.353840 | 1_4:-49604659 | Msa0167660:CDS |
| CCTGCAAATATGCCTCGTTT+TGG | 0.369180 | 1_4:-49603057 | Msa0167660:three_prime_UTR |
| TAAGGAAAAGCTCGTACTTC+AGG | 0.371137 | 1_4:+49603317 | None:intergenic |
| CTCAGGATAGGTGAAGGTTC+TGG | 0.377739 | 1_4:-49606116 | Msa0167660:intron |
| AATTGCATTGTGAGAACATC+TGG | 0.384297 | 1_4:-49603207 | Msa0167660:three_prime_UTR |
| TGTATGGTGCAAATCTAAAT+AGG | 0.384948 | 1_4:-49603178 | Msa0167660:three_prime_UTR |
| TTGTCACCAAATACAGAATC+TGG | 0.389800 | 1_4:+49603565 | None:intergenic |
| AAATCACAATCATTGATATC+AGG | 0.390924 | 1_4:+49602879 | None:intergenic |
| GCAGTGACTGCAGCATGATT+TGG | 0.395312 | 1_4:+49606575 | None:intergenic |
| GGGAACAAGTGCAGCAACTT+TGG | 0.398670 | 1_4:+49608501 | None:intergenic |
| CCAAAACGAGGCATATTTGC+AGG | 0.403848 | 1_4:+49603057 | None:intergenic |
| ACCAGTGACAACTACTCTTC+GGG | 0.408769 | 1_4:+49608757 | None:intergenic |
| CATGACTCGTGCTTTAAAAC+AGG | 0.411211 | 1_4:-49605766 | Msa0167660:intron |
| ACCCTTAGTTTCTTCTGAAT+AGG | 0.413024 | 1_4:+49604667 | None:intergenic |
| GCAATTGGAATAATCATAAG+AGG | 0.415709 | 1_4:+49603224 | None:intergenic |
| GCTACTGGGTCACATTCTAT+TGG | 0.420147 | 1_4:-49606548 | Msa0167660:CDS |
| TAGCATGAAATATGGGTTCC+AGG | 0.420812 | 1_4:-49607189 | Msa0167660:intron |
| CATGCCATTGACTGCTTCAA+AGG | 0.421259 | 1_4:-49603539 | Msa0167660:CDS |
| ATTTGGGGATGCAGATGTTA+TGG | 0.426257 | 1_4:-49606504 | Msa0167660:CDS |
| AGATGTTCTCACAATGCAAT+TGG | 0.428181 | 1_4:+49603209 | None:intergenic |
| TAGAATTAAGCCAAATTTCG+TGG | 0.428412 | 1_4:+49608452 | None:intergenic |
| TATGCAGAGATTCGTGGCTA+TGG | 0.430190 | 1_4:-49605937 | Msa0167660:CDS |
| CAGTCACTGCTTGTGCTACT+GGG | 0.430249 | 1_4:-49606562 | Msa0167660:CDS |
| TCCTTGTGTTCCTGCTCAGT+GGG | 0.431783 | 1_4:+49607599 | None:intergenic |
| GGGGCTATTGGTCATCTCCT+TGG | 0.431894 | 1_4:-49603806 | Msa0167660:CDS |
| ATCTAAATAGGTCAGGAATC+AGG | 0.432532 | 1_4:-49603166 | Msa0167660:three_prime_UTR |
| AGGTTCTGGAGTCTTGGTCT+TGG | 0.434365 | 1_4:-49606102 | Msa0167660:CDS |
| AACCAGTGACAACTACTCTT+CGG | 0.437019 | 1_4:+49608756 | None:intergenic |
| TACCTATTCAGAAGAAACTA+AGG | 0.438794 | 1_4:-49604669 | Msa0167660:CDS |
| TCTCGGTCATTGATCTAAAT+CGG | 0.441313 | 1_4:+49602941 | None:intergenic |
| AATTGATAATGCATCAATAC+TGG | 0.442107 | 1_4:+49606463 | None:intergenic |
| TTCTGGAGTCTTGGTCTTGG+AGG | 0.446638 | 1_4:-49606099 | Msa0167660:intron |
| CTGGATCGGACTAGTAAGAT+AGG | 0.457864 | 1_4:-49603441 | Msa0167660:exon |
| TTGGGCATGGTGACACCTCT+TGG | 0.467880 | 1_4:-49608655 | Msa0167660:CDS |
| TTAATGGAAAATGTGGGGTA+AGG | 0.468366 | 1_4:-49608600 | Msa0167660:CDS |
| TAAGGGTGTGTTTGGATGGA+GGG | 0.473153 | 1_4:-49604651 | Msa0167660:intron |
| CATTAACTCTTAATTTAACA+AGG | 0.477564 | 1_4:-49603588 | Msa0167660:CDS |
| AAACTAAGGGTGTGTTTGGA+TGG | 0.478169 | 1_4:-49604655 | Msa0167660:CDS |
| CATGCTACATCTACACCTTT+AGG | 0.481993 | 1_4:-49604246 | Msa0167660:intron |
| AAGGGCCGCGATGCTTCTTG+TGG | 0.483481 | 1_4:+49606290 | None:intergenic |
| TAATTGGTTTCCCACTGAGC+AGG | 0.484051 | 1_4:-49607609 | Msa0167660:CDS |
| CAACTAATTAATGGAAAATG+TGG | 0.484527 | 1_4:-49608607 | Msa0167660:CDS |
| TAATGGAAAATGTGGGGTAA+GGG | 0.484865 | 1_4:-49608599 | Msa0167660:CDS |
| CACAAACAAACTACACTCAC+TGG | 0.484919 | 1_4:+49608898 | None:intergenic |
| CTAAGGGTGTGTTTGGATGG+AGG | 0.486911 | 1_4:-49604652 | Msa0167660:CDS |
| ATTCGTGGCTATGGGATGTC+AGG | 0.488176 | 1_4:-49605928 | Msa0167660:intron |
| GCATCGCGGCCCTTTGATAG+TGG | 0.490347 | 1_4:-49606281 | Msa0167660:CDS |
| GGTAAGGGCACTGCGTTTGG+AGG | 0.494902 | 1_4:-49608584 | Msa0167660:CDS |
| AGGTGAAGGTTCTGGAGTCT+TGG | 0.497176 | 1_4:-49606108 | Msa0167660:CDS |
| TAGATTTGCACCATACATCA+TGG | 0.502355 | 1_4:+49603184 | None:intergenic |
| TTAACACAGTTAAATGATCT+CGG | 0.502767 | 1_4:+49602924 | None:intergenic |
| AGGGCCGCGATGCTTCTTGT+GGG | 0.506418 | 1_4:+49606291 | None:intergenic |
| TCCCGAAGAGTAGTTGTCAC+TGG | 0.506500 | 1_4:-49608758 | Msa0167660:intron |
| CCCTTTGATAGTGGTCGAGA+TGG | 0.506777 | 1_4:-49606272 | Msa0167660:CDS |
| GTTGTGGAGTCCATAAAACT+TGG | 0.511122 | 1_4:-49608633 | Msa0167660:CDS |
| ATTTCGTGGTTGAATTCACC+AGG | 0.512525 | 1_4:+49608466 | None:intergenic |
| ATATTGATAAACATGGCATC+AGG | 0.513692 | 1_4:-49607218 | Msa0167660:CDS |
| GCCACGTTAGCATGAAATAT+GGG | 0.514383 | 1_4:-49607196 | Msa0167660:CDS |
| AAAATCTATGCAGAGATTCG+TGG | 0.515530 | 1_4:-49605943 | Msa0167660:CDS |
| GGTGCAAATCTAAATAGGTC+AGG | 0.516355 | 1_4:-49603173 | Msa0167660:three_prime_UTR |
| TGCAACCACTCTTACCTTGG+TGG | 0.516765 | 1_4:+49604020 | None:intergenic |
| GATGCAGATGTTATGGTGAC+TGG | 0.517325 | 1_4:-49606497 | Msa0167660:CDS |
| TGCTCAACTGATATGTGAAA+AGG | 0.518775 | 1_4:-49607436 | Msa0167660:intron |
| AGAATCTTTAAGAGCTTCAT+CGG | 0.520139 | 1_4:+49607631 | None:intergenic |
| ATGCAGAGATTCGTGGCTAT+GGG | 0.522380 | 1_4:-49605936 | Msa0167660:CDS |
| AACTAATTAATGGAAAATGT+GGG | 0.522501 | 1_4:-49608606 | Msa0167660:CDS |
| ATCTCCTTTGAAGCAGTCAA+TGG | 0.522727 | 1_4:+49603535 | None:intergenic |
| TTCCTTGTGTTCCTGCTCAG+TGG | 0.523925 | 1_4:+49607598 | None:intergenic |
| TCCATCTCGACCACTATCAA+AGG | 0.533832 | 1_4:+49606271 | None:intergenic |
| AGCTCTTGTAGAATAACGCC+TGG | 0.534029 | 1_4:+49603401 | None:intergenic |
| GTTGCTGCACTTGTTCCCAC+TGG | 0.535358 | 1_4:-49608496 | Msa0167660:CDS |
| TCTTACCTTGGTGGATGAGA+AGG | 0.535724 | 1_4:+49604029 | None:intergenic |
| ATCTATTAAAACGTCTTACA+GGG | 0.538372 | 1_4:+49602973 | None:intergenic |
| GAACATCTGGCCATGATGTA+TGG | 0.539570 | 1_4:-49603194 | Msa0167660:three_prime_UTR |
| TTCACCAGGGTTAGTTCCAG+TGG | 0.540554 | 1_4:+49608480 | None:intergenic |
| ATCATTGATATCAGGTTAGA+CGG | 0.542428 | 1_4:+49602887 | None:intergenic |
| TGAGTGTAGTTTGTTTGTGA+TGG | 0.548019 | 1_4:-49608894 | Msa0167660:exon |
| GAAGAAACAAGAGGAGGAGG+TGG | 0.549891 | 1_4:+49608779 | None:intergenic |
| AGCACGAGTCATGGCCAGAA+TGG | 0.551728 | 1_4:+49605776 | None:intergenic |
| GTGCATCTCATTCATTCCCC+AGG | 0.556702 | 1_4:-49603419 | Msa0167660:three_prime_UTR |
| ATTACTCAACCTCCTAGTGA+TGG | 0.557704 | 1_4:-49605807 | Msa0167660:CDS |
| GGAAGTCAATTGATCAAATG+TGG | 0.558097 | 1_4:+49608522 | None:intergenic |
| TTGATGTAATCTACATCAGA+AGG | 0.558485 | 1_4:+49604273 | None:intergenic |
| TAATGCATCAATACTGGACT+CGG | 0.561888 | 1_4:+49606469 | None:intergenic |
| CTAAAGAAGACGAGCTAGCA+TGG | 0.562258 | 1_4:+49604052 | None:intergenic |
| CGGGAAGAAACAAGAGGAGG+AGG | 0.573055 | 1_4:+49608776 | None:intergenic |
| CCATCTCGACCACTATCAAA+GGG | 0.575537 | 1_4:+49606272 | None:intergenic |
| GCTCTTGTAGAATAACGCCT+GGG | 0.580824 | 1_4:+49603402 | None:intergenic |
| TTACTCAACCTCCTAGTGAT+GGG | 0.586083 | 1_4:-49605806 | Msa0167660:CDS |
| TCCCACTGAGCAGGAACACA+AGG | 0.586433 | 1_4:-49607600 | Msa0167660:CDS |
| ATGGCACCTCTCCCATCACT+AGG | 0.594673 | 1_4:+49605795 | None:intergenic |
| ATGGTGACACCTCTTGGTTG+TGG | 0.599365 | 1_4:-49608649 | Msa0167660:CDS |
| GTTCCCACTGGAACTAACCC+TGG | 0.605390 | 1_4:-49608484 | Msa0167660:CDS |
| ATTGTATGTAGGTTTGGGCA+TGG | 0.609629 | 1_4:-49608668 | Msa0167660:intron |
| CAACCTCCTAGTGATGGGAG+AGG | 0.613052 | 1_4:-49605801 | Msa0167660:CDS |
| ATGATGATGATGATATGCTT+CGG | 0.614822 | 1_4:+49608828 | None:intergenic |
| AGGAACATCGATCCGTGACA+AGG | 0.617850 | 1_4:-49607679 | Msa0167660:CDS |
| ACCACGGATATTGATAAACA+TGG | 0.621168 | 1_4:-49607225 | Msa0167660:CDS |
| GCGTGGCGGAACATCGCGAA+GGG | 0.625508 | 1_4:-49608867 | Msa0167660:CDS |
| GGTCATTGATCTAAATCGGA+TGG | 0.625562 | 1_4:+49602945 | None:intergenic |
| TGCGTGGCGGAACATCGCGA+AGG | 0.630823 | 1_4:-49608868 | Msa0167660:CDS |
| ACTAATTAATGGAAAATGTG+GGG | 0.632550 | 1_4:-49608605 | Msa0167660:CDS |
| AATGAGAATGATTCAATTTG+GGG | 0.633075 | 1_4:-49606519 | Msa0167660:CDS |
| ACCTATTCAGAAGAAACTAA+GGG | 0.633922 | 1_4:-49604668 | Msa0167660:CDS |
| ACCCATATTTCATGCTAACG+TGG | 0.635539 | 1_4:+49607195 | None:intergenic |
| TGGAAAAGCTTTATCGACAG+TGG | 0.638458 | 1_4:+49608799 | None:intergenic |
| TCACCAGGGTTAGTTCCAGT+GGG | 0.639371 | 1_4:+49608481 | None:intergenic |
| ATATGCTATAAACCTTGTCA+CGG | 0.641292 | 1_4:+49607667 | None:intergenic |
| TTTAGCCTTCTCATCCACCA+AGG | 0.647399 | 1_4:-49604034 | Msa0167660:intron |
| CAATTGGAATAATCATAAGA+GGG | 0.647677 | 1_4:+49603225 | None:intergenic |
| TTGTTTGTGATGGCAATGCG+TGG | 0.649163 | 1_4:-49608884 | Msa0167660:exon |
| GCACCTCTCCCATCACTAGG+AGG | 0.650311 | 1_4:+49605798 | None:intergenic |
| GCCATGTTTATCAATATCCG+TGG | 0.652979 | 1_4:+49607224 | None:intergenic |
| CAAAACGAGGCATATTTGCA+GGG | 0.654615 | 1_4:+49603058 | None:intergenic |
| GCAGGAACACAAGGAAAGAA+CGG | 0.661590 | 1_4:-49607591 | Msa0167660:intron |
| CAACAGCTCCAGCAGCACCA+AGG | 0.665891 | 1_4:+49603789 | None:intergenic |
| ACTCTTCGGGAAGAAACAAG+AGG | 0.666135 | 1_4:+49608770 | None:intergenic |
| AAATAGGTCAGGAATCAGGA+TGG | 0.680271 | 1_4:-49603162 | Msa0167660:three_prime_UTR |
| CTCTTGTAGAATAACGCCTG+GGG | 0.685659 | 1_4:+49603403 | None:intergenic |
| TTTCGTGGTTGAATTCACCA+GGG | 0.690900 | 1_4:+49608467 | None:intergenic |
| TTTGTGATGGCAATGCGTGG+CGG | 0.692252 | 1_4:-49608881 | Msa0167660:exon |
| TTATGGACTCCACAACCAAG+AGG | 0.692764 | 1_4:+49608640 | None:intergenic |
| AGAGCTAACACATCATGCTG+AGG | 0.698287 | 1_4:-49603384 | Msa0167660:three_prime_UTR |
| CAAGCCCACAAGAAGCATCG+CGG | 0.701523 | 1_4:-49606295 | Msa0167660:CDS |
| CTTCGGGAAGAAACAAGAGG+AGG | 0.712604 | 1_4:+49608773 | None:intergenic |
| CAGGGACTAAAACCAAAACG+AGG | 0.729871 | 1_4:+49603045 | None:intergenic |
| GCAGATGTTATGGTGACTGG+AGG | 0.730564 | 1_4:-49606494 | Msa0167660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATTCTATTTAAATTAAA+AGG | - | chr1_4:49603854-49603873 | Msa0167660:intron | 10.0% |
| !!! | GACAGTTATTTTTTAAAAAA+TGG | - | chr1_4:49603544-49603563 | Msa0167660:CDS | 15.0% |
| !! | TTAAAAAATGGTTGTAATAT+AGG | - | chr1_4:49603556-49603575 | Msa0167660:CDS | 15.0% |
| !!! | TTTTAACTTCAAAATTAATC+AGG | - | chr1_4:49604260-49604279 | Msa0167660:CDS | 15.0% |
| !!! | TTTAACTTCAAAATTAATCA+GGG | - | chr1_4:49604261-49604280 | Msa0167660:CDS | 15.0% |
| !! | AAAAAAAAAAAACTTGAATG+AGG | + | chr1_4:49604404-49604423 | None:intergenic | 15.0% |
| !!! | TTATAAGTTTTTAACTCAAA+TGG | - | chr1_4:49605018-49605037 | Msa0167660:intron | 15.0% |
| !! | AAAATTATATCTGAAAAACA+GGG | - | chr1_4:49605063-49605082 | Msa0167660:intron | 15.0% |
| !!! | TACTTTTCATTTTGAAATTA+CGG | - | chr1_4:49607167-49607186 | Msa0167660:intron | 15.0% |
| !!! | TACATTTCTTGTTTAAATTA+CGG | + | chr1_4:49607293-49607312 | None:intergenic | 15.0% |
| !! | ATTTAAGAGAAAAATTTGAA+TGG | - | chr1_4:49607880-49607899 | Msa0167660:intron | 15.0% |
| !! | TTTAAGAGAAAAATTTGAAT+GGG | - | chr1_4:49607881-49607900 | Msa0167660:intron | 15.0% |
| !!! | TCTGAAATGAAATAAATATT+TGG | - | chr1_4:49608669-49608688 | Msa0167660:intron | 15.0% |
| !! | ATAAATATTTGGCTAAAATA+TGG | - | chr1_4:49608680-49608699 | Msa0167660:intron | 15.0% |
| !!! | CAAAAACAATTTTTTTTACA+GGG | + | chr1_4:49608744-49608763 | None:intergenic | 15.0% |
| !!! | TTAAAAAACAAAATTTTGCA+GGG | + | chr1_4:49608769-49608788 | None:intergenic | 15.0% |
| !!! | TTTAAAAAACAAAATTTTGC+AGG | + | chr1_4:49608770-49608789 | None:intergenic | 15.0% |
| !! | AACTAATTAATGGAAAATGT+GGG | - | chr1_4:49603162-49603181 | Msa0167660:three_prime_UTR | 20.0% |
| !!! | ATTCAAACTGTTTTCATATA+AGG | - | chr1_4:49603467-49603486 | Msa0167660:CDS | 20.0% |
| !!! | ATATGAAGTATTTGACATAT+TGG | - | chr1_4:49603823-49603842 | Msa0167660:intron | 20.0% |
| !! | AAGTATAAAGAAAACAAAGT+TGG | - | chr1_4:49603933-49603952 | Msa0167660:intron | 20.0% |
| !!! | GTGTTATTATAAGTTTCTTT+TGG | - | chr1_4:49603960-49603979 | Msa0167660:intron | 20.0% |
| !! | TTAACTTCAAAATTAATCAG+GGG | - | chr1_4:49604262-49604281 | Msa0167660:CDS | 20.0% |
| !! | AAAAACTACTTTCGATTTAT+TGG | - | chr1_4:49604604-49604623 | Msa0167660:intron | 20.0% |
| !! | ATATCTACATAAGTTAGTAA+AGG | + | chr1_4:49604688-49604707 | None:intergenic | 20.0% |
| !!! | TAATTTTTTCTGATTGGATA+TGG | + | chr1_4:49604882-49604901 | None:intergenic | 20.0% |
| !! | GAAAATTATATCTGAAAAAC+AGG | - | chr1_4:49605062-49605081 | Msa0167660:intron | 20.0% |
| !! | ACAAAGACAAATAACTAATA+AGG | + | chr1_4:49605389-49605408 | None:intergenic | 20.0% |
| !! | TGATACTTAAAAACTGATAT+TGG | - | chr1_4:49605414-49605433 | Msa0167660:intron | 20.0% |
| !! | TGAACATTAAGCAAAATAAA+TGG | + | chr1_4:49605571-49605590 | None:intergenic | 20.0% |
| !! | GGAAATGAATAAACAAAAAA+AGG | + | chr1_4:49605764-49605783 | None:intergenic | 20.0% |
| !! | ACTTATTATGTATGAATAAG+TGG | - | chr1_4:49606096-49606115 | Msa0167660:intron | 20.0% |
| !! | CTTATTATGTATGAATAAGT+GGG | - | chr1_4:49606097-49606116 | Msa0167660:intron | 20.0% |
| !! | CCAACAAAAAAAAAAACTTT+GGG | + | chr1_4:49606219-49606238 | None:intergenic | 20.0% |
| !! | TCCAACAAAAAAAAAAACTT+TGG | + | chr1_4:49606220-49606239 | None:intergenic | 20.0% |
| !!! | TTTATAACTCTAAAACCTTT+GGG | + | chr1_4:49606377-49606396 | None:intergenic | 20.0% |
| !!! | TTTTATAACTCTAAAACCTT+TGG | + | chr1_4:49606378-49606397 | None:intergenic | 20.0% |
| !! | AGTGACAATTAAAGTTAAAA+AGG | + | chr1_4:49606877-49606896 | None:intergenic | 20.0% |
| !!! | TTTTTATATTCAAGTGCTTT+TGG | - | chr1_4:49607050-49607069 | Msa0167660:intron | 20.0% |
| !!! | TTTTGGCATATATTATTTCA+GGG | - | chr1_4:49607067-49607086 | Msa0167660:intron | 20.0% |
| !! | TTTGATATCATTAACACTTA+GGG | + | chr1_4:49607360-49607379 | None:intergenic | 20.0% |
| !! | AATATTCAAACTTAAATTGC+TGG | + | chr1_4:49607577-49607596 | None:intergenic | 20.0% |
| !! | TTAAGAGAAAAATTTGAATG+GGG | - | chr1_4:49607882-49607901 | Msa0167660:intron | 20.0% |
| !! | CTTGTTAAATTAAGAGTTAA+TGG | + | chr1_4:49608182-49608201 | None:intergenic | 20.0% |
| !! | CATTAACTCTTAATTTAACA+AGG | - | chr1_4:49608180-49608199 | Msa0167660:intron | 20.0% |
| !!! | CCAAAAACAATTTTTTTTAC+AGG | + | chr1_4:49608745-49608764 | None:intergenic | 20.0% |
| !!! | CCTGTAAAAAAAATTGTTTT+TGG | - | chr1_4:49608742-49608761 | Msa0167660:intron | 20.0% |
| !! | TTTTGAATTGTATGTAGGTT+TGG | - | chr1_4:49603094-49603113 | Msa0167660:three_prime_UTR | 25.0% |
| ! | TTTGAATTGTATGTAGGTTT+GGG | - | chr1_4:49603095-49603114 | Msa0167660:three_prime_UTR | 25.0% |
| !! | CACATTTTCCATTAATTAGT+TGG | + | chr1_4:49603163-49603182 | None:intergenic | 25.0% |
| ! | CAACTAATTAATGGAAAATG+TGG | - | chr1_4:49603161-49603180 | Msa0167660:three_prime_UTR | 25.0% |
| ! | ACTAATTAATGGAAAATGTG+GGG | - | chr1_4:49603163-49603182 | Msa0167660:three_prime_UTR | 25.0% |
| ! | CAATAAGCATAATAGTTGTT+CGG | + | chr1_4:49604035-49604054 | None:intergenic | 25.0% |
| ! | AAGCTCTTAAAGATTCTAAT+TGG | - | chr1_4:49604143-49604162 | Msa0167660:intron | 25.0% |
| !! | ACGGTATGCAAATTTTTATA+TGG | - | chr1_4:49604196-49604215 | Msa0167660:intron | 25.0% |
| ! | TGAAGTTAAAATACAATGCA+AGG | + | chr1_4:49604251-49604270 | None:intergenic | 25.0% |
| ! | TAACTTCAAAATTAATCAGG+GGG | - | chr1_4:49604263-49604282 | Msa0167660:CDS | 25.0% |
| !!! | TTAGTCCATTTTTTATACCA+CGG | - | chr1_4:49604527-49604546 | Msa0167660:intron | 25.0% |
| ! | AATATCCGTGGTATAAAAAA+TGG | + | chr1_4:49604535-49604554 | None:intergenic | 25.0% |
| ! | TCTTTAGATATATAGAATGC+AGG | - | chr1_4:49604731-49604750 | Msa0167660:intron | 25.0% |
| !!! | TTTTAAAAGAGTAAGAAGCA+TGG | + | chr1_4:49604847-49604866 | None:intergenic | 25.0% |
| ! | CAATGAGAATGATTCAATTT+GGG | - | chr1_4:49605248-49605267 | Msa0167660:intron | 25.0% |
| ! | AATGAGAATGATTCAATTTG+GGG | - | chr1_4:49605249-49605268 | Msa0167660:intron | 25.0% |
| !!! | AATTGATAATGCATCAATAC+TGG | + | chr1_4:49605308-49605327 | None:intergenic | 25.0% |
| ! | AAGACAAATAACTAATAAGG+TGG | + | chr1_4:49605386-49605405 | None:intergenic | 25.0% |
| !!! | ATCAGTTTTTAAGTATCAGA+GGG | + | chr1_4:49605412-49605431 | None:intergenic | 25.0% |
| !!! | TATCAGTTTTTAAGTATCAG+AGG | + | chr1_4:49605413-49605432 | None:intergenic | 25.0% |
| !! | TGAGTTATATTTTGTACTCA+AGG | + | chr1_4:49605455-49605474 | None:intergenic | 25.0% |
| !!! | TTTGCTTAATGTTCACTTTT+TGG | - | chr1_4:49605576-49605595 | Msa0167660:intron | 25.0% |
| !!! | TCCAATTTATGTTTTTACTC+AGG | - | chr1_4:49605635-49605654 | Msa0167660:intron | 25.0% |
| ! | TCCTGAGTAAAAACATAAAT+TGG | + | chr1_4:49605639-49605658 | None:intergenic | 25.0% |
| !!! | TTTATGTTTTTACTCAGGAT+AGG | - | chr1_4:49605640-49605659 | Msa0167660:intron | 25.0% |
| !!! | GGTAAGTTAAATTTTTTGTG+TGG | - | chr1_4:49605690-49605709 | Msa0167660:intron | 25.0% |
| ! | TATTCATTTCCCTATTGTTT+AGG | - | chr1_4:49605773-49605792 | Msa0167660:CDS | 25.0% |
| !!! | ATTTCATATGGATTTTGACT+AGG | - | chr1_4:49605925-49605944 | Msa0167660:intron | 25.0% |
| !!! | TTTCATATGGATTTTGACTA+GGG | - | chr1_4:49605926-49605945 | Msa0167660:intron | 25.0% |
| ! | TAACAAATACAAAGCAACAT+AGG | + | chr1_4:49606040-49606059 | None:intergenic | 25.0% |
| !! | AAAAAAAAAACTTTGGGAGA+GGG | + | chr1_4:49606213-49606232 | None:intergenic | 25.0% |
| !! | AAAAAAAAAAACTTTGGGAG+AGG | + | chr1_4:49606214-49606233 | None:intergenic | 25.0% |
| !!! | CCCAAAGTTTTTTTTTTTGT+TGG | - | chr1_4:49606216-49606235 | Msa0167660:intron | 25.0% |
| !!! | CCATTCTAGTTTTGTTATTA+GGG | - | chr1_4:49606626-49606645 | Msa0167660:intron | 25.0% |
| ! | GATAATAAGAGAAATAGAAC+AGG | + | chr1_4:49606801-49606820 | None:intergenic | 25.0% |
| !! | GTAATATGTTTGTTAGTTGA+CGG | + | chr1_4:49606850-49606869 | None:intergenic | 25.0% |
| ! | TGAATGAAATTATCATGTGA+AGG | - | chr1_4:49607025-49607044 | Msa0167660:intron | 25.0% |
| !! | CTTTTGGCATATATTATTTC+AGG | - | chr1_4:49607066-49607085 | Msa0167660:intron | 25.0% |
| ! | GTTTGATATCATTAACACTT+AGG | + | chr1_4:49607361-49607380 | None:intergenic | 25.0% |
| ! | GAAAACACAACAATACAATA+TGG | + | chr1_4:49607391-49607410 | None:intergenic | 25.0% |
| ! | AAATTATATGCTCATCTGTT+TGG | - | chr1_4:49607786-49607805 | Msa0167660:intron | 25.0% |
| ! | ATAGATTAAGCACAAATTCA+CGG | + | chr1_4:49608093-49608112 | None:intergenic | 25.0% |
| ! | ACTATTAGATTAAGCATACA+GGG | + | chr1_4:49608123-49608142 | None:intergenic | 25.0% |
| !! | ATATGCTACAAAAAGCTTTT+AGG | + | chr1_4:49608422-49608441 | None:intergenic | 25.0% |
| ! | CAATTGGAATAATCATAAGA+GGG | + | chr1_4:49608546-49608565 | None:intergenic | 25.0% |
| ! | ATCTATTAAAACGTCTTACA+GGG | + | chr1_4:49608798-49608817 | None:intergenic | 25.0% |
| ! | TTAACACAGTTAAATGATCT+CGG | + | chr1_4:49608847-49608866 | None:intergenic | 25.0% |
| ! | AAATCACAATCATTGATATC+AGG | + | chr1_4:49608892-49608911 | None:intergenic | 25.0% |
| ! | ATGATGATGATGATATGCTT+CGG | + | chr1_4:49602943-49602962 | None:intergenic | 30.0% |
| CATAAAATCTCATGTATTCG+TGG | - | chr1_4:49603069-49603088 | Msa0167660:three_prime_UTR | 30.0% | |
| ! | TGGCTTTTTGAATTGTATGT+AGG | - | chr1_4:49603089-49603108 | Msa0167660:three_prime_UTR | 30.0% |
| !! | TTAGTTGGTTCCAAGTTTTA+TGG | + | chr1_4:49603148-49603167 | None:intergenic | 30.0% |
| ACTTGGAACCAACTAATTAA+TGG | - | chr1_4:49603152-49603171 | Msa0167660:three_prime_UTR | 30.0% | |
| TAGAATTAAGCCAAATTTCG+TGG | + | chr1_4:49603319-49603338 | None:intergenic | 30.0% | |
| ! | CGAAATTTGGCTTAATTCTA+AGG | - | chr1_4:49603319-49603338 | Msa0167660:three_prime_UTR | 30.0% |
| CGATAAACGTCTTAATTAAG+TGG | - | chr1_4:49603399-49603418 | Msa0167660:three_prime_UTR | 30.0% | |
| ! | GTATAGAGAAAAGTGTAAAC+TGG | - | chr1_4:49603489-49603508 | Msa0167660:CDS | 30.0% |
| ATATAGGCTTACATGACAAT+AGG | - | chr1_4:49603572-49603591 | Msa0167660:CDS | 30.0% | |
| TATAGGCTTACATGACAATA+GGG | - | chr1_4:49603573-49603592 | Msa0167660:CDS | 30.0% | |
| ! | AATAAGCTAAAACCAGCTTT+TGG | - | chr1_4:49603660-49603679 | Msa0167660:intron | 30.0% |
| ! | TATTCTCCTCTAAGAACTTA+TGG | + | chr1_4:49603806-49603825 | None:intergenic | 30.0% |
| GATGTTATCTGTTATTGCTT+TGG | - | chr1_4:49603988-49604007 | Msa0167660:intron | 30.0% | |
| CGAACAACTATTATGCTTAT+TGG | - | chr1_4:49604033-49604052 | Msa0167660:intron | 30.0% | |
| GAAATGTCACAATACTACAA+TGG | + | chr1_4:49604065-49604084 | None:intergenic | 30.0% | |
| ATATGCTATAAACCTTGTCA+CGG | + | chr1_4:49604104-49604123 | None:intergenic | 30.0% | |
| ! | AGAATCTTTAAGAGCTTCAT+CGG | + | chr1_4:49604140-49604159 | None:intergenic | 30.0% |
| !! | GTGGTATAAAAAATGGACTA+AGG | + | chr1_4:49604528-49604547 | None:intergenic | 30.0% |
| ATATTGATAAACATGGCATC+AGG | - | chr1_4:49604550-49604569 | Msa0167660:intron | 30.0% | |
| !!! | ATCGAAAGTAGTTTTTTACC+TGG | + | chr1_4:49604600-49604619 | None:intergenic | 30.0% |
| TAAGTTAGTAAAGGACAATG+TGG | + | chr1_4:49604679-49604698 | None:intergenic | 30.0% | |
| TTCTAAATCAGTTTCACACA+AGG | + | chr1_4:49604807-49604826 | None:intergenic | 30.0% | |
| ATAATTATATCCGAAGTGAC+AGG | + | chr1_4:49604941-49604960 | None:intergenic | 30.0% | |
| !!! | TCAACCATGTTTTAAGAGAT+TGG | - | chr1_4:49604962-49604981 | Msa0167660:intron | 30.0% |
| CTAACCAATCTCTTAAAACA+TGG | + | chr1_4:49604969-49604988 | None:intergenic | 30.0% | |
| AATGGTTGCAATTTAGAGAT+TGG | - | chr1_4:49605036-49605055 | Msa0167660:intron | 30.0% | |
| ! | TGAAAAACAGGGTATTAAAC+TGG | - | chr1_4:49605074-49605093 | Msa0167660:intron | 30.0% |
| ! | TATTAAACTGGTTGTTGTTG+TGG | - | chr1_4:49605086-49605105 | Msa0167660:intron | 30.0% |
| GCAATGAGAATGATTCAATT+TGG | - | chr1_4:49605247-49605266 | Msa0167660:intron | 30.0% | |
| ATTGATGCATTATCAATTGC+AGG | - | chr1_4:49605310-49605329 | Msa0167660:intron | 30.0% | |
| CAAATAACTAATAAGGTGGT+TGG | + | chr1_4:49605382-49605401 | None:intergenic | 30.0% | |
| AAAAACTGATATTGGAATGC+AGG | - | chr1_4:49605422-49605441 | Msa0167660:intron | 30.0% | |
| CTTCAAATTATTGCTCTGTT+TGG | - | chr1_4:49605599-49605618 | Msa0167660:intron | 30.0% | |
| TATAAACAAAGAAGGAGAAC+AGG | + | chr1_4:49605735-49605754 | None:intergenic | 30.0% | |
| GGTCAGATTATAAACAAAGA+AGG | + | chr1_4:49605743-49605762 | None:intergenic | 30.0% | |
| GATGTCAGGTAATTTATTGT+AGG | - | chr1_4:49605854-49605873 | Msa0167660:intron | 30.0% | |
| CACAAATAAAACTAAGACTG+GGG | + | chr1_4:49605896-49605915 | None:intergenic | 30.0% | |
| CCACAAATAAAACTAAGACT+GGG | + | chr1_4:49605897-49605916 | None:intergenic | 30.0% | |
| ACCACAAATAAAACTAAGAC+TGG | + | chr1_4:49605898-49605917 | None:intergenic | 30.0% | |
| ! | GTGGTTGATTTCATTTCATA+TGG | - | chr1_4:49605913-49605932 | Msa0167660:intron | 30.0% |
| !!! | TTCATATGGATTTTGACTAG+GGG | - | chr1_4:49605927-49605946 | Msa0167660:intron | 30.0% |
| ATTATGTATGAATAAGTGGG+AGG | - | chr1_4:49606100-49606119 | Msa0167660:CDS | 30.0% | |
| ACATTGATGGAAAAGACAAA+GGG | + | chr1_4:49606415-49606434 | None:intergenic | 30.0% | |
| ACTATATAAGCTTGGCTATT+TGG | - | chr1_4:49606445-49606464 | Msa0167660:intron | 30.0% | |
| ! | AATAGTTCTTTTGTGAAGAG+TGG | + | chr1_4:49606533-49606552 | None:intergenic | 30.0% |
| ACTCTTCACAAAAGAACTAT+TGG | - | chr1_4:49606532-49606551 | Msa0167660:CDS | 30.0% | |
| TTCACAAAAGAACTATTGGT+TGG | - | chr1_4:49606536-49606555 | Msa0167660:CDS | 30.0% | |
| !!! | GCCATTCTAGTTTTGTTATT+AGG | - | chr1_4:49606625-49606644 | Msa0167660:intron | 30.0% |
| CCCTAATAACAAAACTAGAA+TGG | + | chr1_4:49606629-49606648 | None:intergenic | 30.0% | |
| CCAATAAATAGAGAATGAGA+GGG | + | chr1_4:49606775-49606794 | None:intergenic | 30.0% | |
| TACCTATTCAGAAGAAACTA+AGG | - | chr1_4:49607099-49607118 | Msa0167660:intron | 30.0% | |
| ACCTATTCAGAAGAAACTAA+GGG | - | chr1_4:49607100-49607119 | Msa0167660:intron | 30.0% | |
| CCTGACTGAAATATATGAAA+AGG | + | chr1_4:49607468-49607487 | None:intergenic | 30.0% | |
| ! | CCTTTTCATATATTTCAGTC+AGG | - | chr1_4:49607465-49607484 | Msa0167660:CDS | 30.0% |
| TTGATGTAATCTACATCAGA+AGG | + | chr1_4:49607498-49607517 | None:intergenic | 30.0% | |
| ATGTTTGAATACTACAACAG+TGG | - | chr1_4:49607601-49607620 | Msa0167660:CDS | 30.0% | |
| ATCACCTGTATAAAGAATTC+TGG | + | chr1_4:49607658-49607677 | None:intergenic | 30.0% | |
| ! | CAGATGAGCATATAATTTGT+TGG | + | chr1_4:49607784-49607803 | None:intergenic | 30.0% |
| GTGAAATTATGGAACAGTTA+TGG | + | chr1_4:49607933-49607952 | None:intergenic | 30.0% | |
| !! | TCCATAATTTCACTGATTTC+AGG | - | chr1_4:49607940-49607959 | Msa0167660:intron | 30.0% |
| !! | CCATAATTTCACTGATTTCA+GGG | - | chr1_4:49607941-49607960 | Msa0167660:intron | 30.0% |
| !! | CATAATTTCACTGATTTCAG+GGG | - | chr1_4:49607942-49607961 | Msa0167660:intron | 30.0% |
| !! | ATAATTTCACTGATTTCAGG+GGG | - | chr1_4:49607943-49607962 | Msa0167660:intron | 30.0% |
| CACTATTAGATTAAGCATAC+AGG | + | chr1_4:49608124-49608143 | None:intergenic | 30.0% | |
| GTATGCTTAATCTAATAGTG+CGG | - | chr1_4:49608124-49608143 | Msa0167660:intron | 30.0% | |
| TTTGACATAGCTACTCTAAT+TGG | + | chr1_4:49608260-49608279 | None:intergenic | 30.0% | |
| !!! | ATGTCAAACTCTTTTGGTTT+TGG | - | chr1_4:49608272-49608291 | Msa0167660:intron | 30.0% |
| !!! | CAGAGCAGTTTTAAAATGTA+AGG | + | chr1_4:49608472-49608491 | None:intergenic | 30.0% |
| GCAATTGGAATAATCATAAG+AGG | + | chr1_4:49608547-49608566 | None:intergenic | 30.0% | |
| TGTATGGTGCAAATCTAAAT+AGG | - | chr1_4:49608590-49608609 | Msa0167660:CDS | 30.0% | |
| GATCTATTAAAACGTCTTAC+AGG | + | chr1_4:49608799-49608818 | None:intergenic | 30.0% | |
| ATCATTGATATCAGGTTAGA+CGG | + | chr1_4:49608884-49608903 | None:intergenic | 30.0% | |
| !! | TGAGTGTAGTTTGTTTGTGA+TGG | - | chr1_4:49602874-49602893 | Msa0167660:three_prime_UTR | 35.0% |
| TGATGATATGCTTCGGTAAA+TGG | + | chr1_4:49602936-49602955 | None:intergenic | 35.0% | |
| TGAATGCGTAATTTGAGAGA+AGG | + | chr1_4:49603051-49603070 | None:intergenic | 35.0% | |
| TTAATGGAAAATGTGGGGTA+AGG | - | chr1_4:49603168-49603187 | Msa0167660:three_prime_UTR | 35.0% | |
| TAATGGAAAATGTGGGGTAA+GGG | - | chr1_4:49603169-49603188 | Msa0167660:three_prime_UTR | 35.0% | |
| GGAAGTCAATTGATCAAATG+TGG | + | chr1_4:49603249-49603268 | None:intergenic | 35.0% | |
| GTGAATTCAACCACGAAATT+TGG | - | chr1_4:49603306-49603325 | Msa0167660:three_prime_UTR | 35.0% | |
| TAGCATAGCTTATGAAGAGA+CGG | + | chr1_4:49603627-49603646 | None:intergenic | 35.0% | |
| AAGCTATGCTAGAGAACTTA+CGG | - | chr1_4:49603636-49603655 | Msa0167660:intron | 35.0% | |
| ! | AGATTGCTTTCTTTCAAGTC+AGG | + | chr1_4:49603897-49603916 | None:intergenic | 35.0% |
| AGTATTGTGACATTTCCCTT+AGG | - | chr1_4:49604069-49604088 | Msa0167660:CDS | 35.0% | |
| TGCTCAACTGATATGTGAAA+AGG | - | chr1_4:49604332-49604351 | Msa0167660:intron | 35.0% | |
| ACCACGGATATTGATAAACA+TGG | - | chr1_4:49604543-49604562 | Msa0167660:intron | 35.0% | |
| !!! | GGTCGCTAATTTTTTCTGAT+TGG | + | chr1_4:49604888-49604907 | None:intergenic | 35.0% |
| ! | GAGCTCTATCTTATTTCAAG+AGG | + | chr1_4:49604909-49604928 | None:intergenic | 35.0% |
| ! | AAGAGATTGGTTAGTCAATC+AGG | - | chr1_4:49604975-49604994 | Msa0167660:intron | 35.0% |
| ! | TTTTCCCTATTCCTGAATAC+AGG | - | chr1_4:49605168-49605187 | Msa0167660:intron | 35.0% |
| TTTCCCTATTCCTGAATACA+GGG | - | chr1_4:49605169-49605188 | Msa0167660:intron | 35.0% | |
| TAATGCATCAATACTGGACT+CGG | + | chr1_4:49605302-49605321 | None:intergenic | 35.0% | |
| TGGCACTAACATAAAACACA+AGG | + | chr1_4:49605362-49605381 | None:intergenic | 35.0% | |
| ! | TTTTTACTCAGGATAGGTGA+AGG | - | chr1_4:49605646-49605665 | Msa0167660:intron | 35.0% |
| GCTCAAGTTCCTAAACAATA+GGG | + | chr1_4:49605785-49605804 | None:intergenic | 35.0% | |
| TGCTCAAGTTCCTAAACAAT+AGG | + | chr1_4:49605786-49605805 | None:intergenic | 35.0% | |
| ! | ACGAATCTCTGCATAGATTT+TGG | + | chr1_4:49605826-49605845 | None:intergenic | 35.0% |
| AAAATCTATGCAGAGATTCG+TGG | - | chr1_4:49605825-49605844 | Msa0167660:intron | 35.0% | |
| !!! | CCCAGTCTTAGTTTTATTTG+TGG | - | chr1_4:49605894-49605913 | Msa0167660:intron | 35.0% |
| ACTCAAGTCCAAATTCTAAG+AGG | - | chr1_4:49606163-49606182 | Msa0167660:intron | 35.0% | |
| TATGCCAAAGTTAGAGTTGA+GGG | + | chr1_4:49606267-49606286 | None:intergenic | 35.0% | |
| TTATGCCAAAGTTAGAGTTG+AGG | + | chr1_4:49606268-49606287 | None:intergenic | 35.0% | |
| ATTGATGGAAAAGACAAAGG+GGG | + | chr1_4:49606413-49606432 | None:intergenic | 35.0% | |
| CATTGATGGAAAAGACAAAG+GGG | + | chr1_4:49606414-49606433 | None:intergenic | 35.0% | |
| GACATTGATGGAAAAGACAA+AGG | + | chr1_4:49606416-49606435 | None:intergenic | 35.0% | |
| CCCTCTCATTCTCTATTTAT+TGG | - | chr1_4:49606772-49606791 | Msa0167660:intron | 35.0% | |
| GCCAATAAATAGAGAATGAG+AGG | + | chr1_4:49606776-49606795 | None:intergenic | 35.0% | |
| TTTGTTAGTAGTTGGAAGCT+GGG | + | chr1_4:49606823-49606842 | None:intergenic | 35.0% | |
| TGCTAATATCTAACCAGTAC+TGG | + | chr1_4:49606957-49606976 | None:intergenic | 35.0% | |
| ACCCTTAGTTTCTTCTGAAT+AGG | + | chr1_4:49607104-49607123 | None:intergenic | 35.0% | |
| ATTAACACTTAGGGTGTGTT+TGG | + | chr1_4:49607351-49607370 | None:intergenic | 35.0% | |
| CTCACCAGAATTCTTTATAC+AGG | - | chr1_4:49607651-49607670 | Msa0167660:CDS | 35.0% | |
| ATGAGAGCTTTCATCTAAGA+GGG | + | chr1_4:49607834-49607853 | None:intergenic | 35.0% | |
| AATGAGAGCTTTCATCTAAG+AGG | + | chr1_4:49607835-49607854 | None:intergenic | 35.0% | |
| TAGATGAAAGCTCTCATTCA+TGG | - | chr1_4:49607837-49607856 | Msa0167660:intron | 35.0% | |
| AGATGAAAGCTCTCATTCAT+GGG | - | chr1_4:49607838-49607857 | Msa0167660:intron | 35.0% | |
| CCCTGAAATCAGTGAAATTA+TGG | + | chr1_4:49607944-49607963 | None:intergenic | 35.0% | |
| TCAAAACGTTGCTTACATGT+CGG | + | chr1_4:49608030-49608049 | None:intergenic | 35.0% | |
| ! | TCTTTTGATGTTCTTATCCC+AGG | - | chr1_4:49608148-49608167 | Msa0167660:intron | 35.0% |
| ! | CTTTTGATGTTCTTATCCCA+GGG | - | chr1_4:49608149-49608168 | Msa0167660:intron | 35.0% |
| TTGTCACCAAATACAGAATC+TGG | + | chr1_4:49608206-49608225 | None:intergenic | 35.0% | |
| ! | GTAGCTATGTCAAACTCTTT+TGG | - | chr1_4:49608266-49608285 | Msa0167660:intron | 35.0% |
| !!! | TCAAACTCTTTTGGTTTTGG+AGG | - | chr1_4:49608275-49608294 | Msa0167660:intron | 35.0% |
| TCCAGAGTAAGCAAAAAGTA+GGG | + | chr1_4:49608312-49608331 | None:intergenic | 35.0% | |
| ATCCAGAGTAAGCAAAAAGT+AGG | + | chr1_4:49608313-49608332 | None:intergenic | 35.0% | |
| ! | ACTTTTTGCTTACTCTGGAT+CGG | - | chr1_4:49608313-49608332 | Msa0167660:intron | 35.0% |
| TCATGCTGAGGAGAATTTAA+TGG | - | chr1_4:49608396-49608415 | Msa0167660:intron | 35.0% | |
| AGATGTTCTCACAATGCAAT+TGG | + | chr1_4:49608562-49608581 | None:intergenic | 35.0% | |
| AATTGCATTGTGAGAACATC+TGG | - | chr1_4:49608561-49608580 | Msa0167660:CDS | 35.0% | |
| TAGATTTGCACCATACATCA+TGG | + | chr1_4:49608587-49608606 | None:intergenic | 35.0% | |
| ATCTAAATAGGTCAGGAATC+AGG | - | chr1_4:49608602-49608621 | Msa0167660:CDS | 35.0% | |
| TCTCGGTCATTGATCTAAAT+CGG | + | chr1_4:49608830-49608849 | None:intergenic | 35.0% | |
| ! | TGGAAAAGCTTTATCGACAG+TGG | + | chr1_4:49602972-49602991 | None:intergenic | 40.0% |
| AACCAGTGACAACTACTCTT+CGG | + | chr1_4:49603015-49603034 | None:intergenic | 40.0% | |
| CGTAATTTGAGAGAAGGAGA+TGG | + | chr1_4:49603045-49603064 | None:intergenic | 40.0% | |
| ATTGTATGTAGGTTTGGGCA+TGG | - | chr1_4:49603100-49603119 | Msa0167660:three_prime_UTR | 40.0% | |
| GTTGTGGAGTCCATAAAACT+TGG | - | chr1_4:49603135-49603154 | Msa0167660:three_prime_UTR | 40.0% | |
| TTTCGTGGTTGAATTCACCA+GGG | + | chr1_4:49603304-49603323 | None:intergenic | 40.0% | |
| ATTTCGTGGTTGAATTCACC+AGG | + | chr1_4:49603305-49603324 | None:intergenic | 40.0% | |
| CTTATGACATGTCCAAAAGC+TGG | + | chr1_4:49603675-49603694 | None:intergenic | 40.0% | |
| ! | CCATGGTCTTAGAGTATGTT+TGG | + | chr1_4:49603767-49603786 | None:intergenic | 40.0% |
| !! | CCAAACATACTCTAAGACCA+TGG | - | chr1_4:49603764-49603783 | Msa0167660:CDS | 40.0% |
| ! | CCTCTAAGAACTTATGGCAA+TGG | + | chr1_4:49603800-49603819 | None:intergenic | 40.0% |
| CCATTGCCATAAGTTCTTAG+AGG | - | chr1_4:49603797-49603816 | Msa0167660:CDS | 40.0% | |
| !! | ATTAATCAGGGGGTGTCTAT+TGG | - | chr1_4:49604273-49604292 | Msa0167660:CDS | 40.0% |
| TATGTGAAAAGGTCAGTTCG+TGG | - | chr1_4:49604343-49604362 | Msa0167660:intron | 40.0% | |
| !! | CTGATTCTGAAGTAGTTTGC+TGG | - | chr1_4:49604373-49604392 | Msa0167660:intron | 40.0% |
| GCCATGTTTATCAATATCCG+TGG | + | chr1_4:49604547-49604566 | None:intergenic | 40.0% | |
| GCCACGTTAGCATGAAATAT+GGG | - | chr1_4:49604572-49604591 | Msa0167660:intron | 40.0% | |
| ACCCATATTTCATGCTAACG+TGG | + | chr1_4:49604576-49604595 | None:intergenic | 40.0% | |
| TAGCATGAAATATGGGTTCC+AGG | - | chr1_4:49604579-49604598 | Msa0167660:intron | 40.0% | |
| TTATATCCGAAGTGACAGGT+AGG | + | chr1_4:49604937-49604956 | None:intergenic | 40.0% | |
| AGTCAATCAGGACATATCTC+AGG | - | chr1_4:49604987-49605006 | Msa0167660:intron | 40.0% | |
| TTCCCTATTCCTGAATACAG+GGG | - | chr1_4:49605170-49605189 | Msa0167660:intron | 40.0% | |
| ATTTGGGGATGCAGATGTTA+TGG | - | chr1_4:49605264-49605283 | Msa0167660:intron | 40.0% | |
| CAAAGAAGGAGAACAGGAAT+TGG | + | chr1_4:49605729-49605748 | None:intergenic | 40.0% | |
| ATTACTCAACCTCCTAGTGA+TGG | - | chr1_4:49605961-49605980 | Msa0167660:CDS | 40.0% | |
| TTACTCAACCTCCTAGTGAT+GGG | - | chr1_4:49605962-49605981 | Msa0167660:CDS | 40.0% | |
| !!! | CTGTTTTAAAGCACGAGTCA+TGG | + | chr1_4:49606004-49606023 | None:intergenic | 40.0% |
| !! | CATGACTCGTGCTTTAAAAC+AGG | - | chr1_4:49606002-49606021 | Msa0167660:intron | 40.0% |
| TTCACCCTCAACTCTAACTT+TGG | - | chr1_4:49606260-49606279 | Msa0167660:intron | 40.0% | |
| ! | CTTTTCCATCAATGTCACTG+TGG | - | chr1_4:49606420-49606439 | Msa0167660:intron | 40.0% |
| CTGTGGCTACTATATAAGCT+TGG | - | chr1_4:49606437-49606456 | Msa0167660:intron | 40.0% | |
| ! | GTTCTTTTGTGAAGAGTGGT+GGG | + | chr1_4:49606529-49606548 | None:intergenic | 40.0% |
| ! | AGTTCTTTTGTGAAGAGTGG+TGG | + | chr1_4:49606530-49606549 | None:intergenic | 40.0% |
| AGTGGTAACCCAGAATTTCT+AGG | - | chr1_4:49606698-49606717 | Msa0167660:intron | 40.0% | |
| GTGGTAACCCAGAATTTCTA+GGG | - | chr1_4:49606699-49606718 | Msa0167660:intron | 40.0% | |
| ATTGGACATAGGGAGATTTG+CGG | + | chr1_4:49606726-49606745 | None:intergenic | 40.0% | |
| ! | ATACTGTCATTTGAGTGAGC+TGG | + | chr1_4:49606752-49606771 | None:intergenic | 40.0% |
| ! | GTTTGTTAGTAGTTGGAAGC+TGG | + | chr1_4:49606824-49606843 | None:intergenic | 40.0% |
| ! | ACGGAGTGTTTGTTAGTAGT+TGG | + | chr1_4:49606831-49606850 | None:intergenic | 40.0% |
| ! | TACTGGTTGTGGCAAAAGTT+TGG | + | chr1_4:49606940-49606959 | None:intergenic | 40.0% |
| !! | TATCTAACCAGTACTGGTTG+TGG | + | chr1_4:49606951-49606970 | None:intergenic | 40.0% |
| ! | GAAGAAACTAAGGGTGTGTT+TGG | - | chr1_4:49607109-49607128 | Msa0167660:intron | 40.0% |
| ! | AAACTAAGGGTGTGTTTGGA+TGG | - | chr1_4:49607113-49607132 | Msa0167660:intron | 40.0% |
| TTTGGATGGAGGGTTTAGAA+GGG | - | chr1_4:49607127-49607146 | Msa0167660:intron | 40.0% | |
| TTTGGATTGAGGGTTTAGGA+GGG | + | chr1_4:49607333-49607352 | None:intergenic | 40.0% | |
| TGTGTTTGGATTGAGGGTTT+AGG | + | chr1_4:49607337-49607356 | None:intergenic | 40.0% | |
| TTAGGGTGTGTTTGGATTGA+GGG | + | chr1_4:49607343-49607362 | None:intergenic | 40.0% | |
| CATGCTACATCTACACCTTT+AGG | - | chr1_4:49607522-49607541 | Msa0167660:intron | 40.0% | |
| TTAAATTGCTGGAATCCGTG+AGG | + | chr1_4:49607566-49607585 | None:intergenic | 40.0% | |
| TGAGAGCTTTCATCTAAGAG+GGG | + | chr1_4:49607833-49607852 | None:intergenic | 40.0% | |
| AAAGCTCTCATTCATGGGAA+TGG | - | chr1_4:49607843-49607862 | Msa0167660:intron | 40.0% | |
| TAGATTAAGCATACAGGGTC+TGG | + | chr1_4:49608118-49608137 | None:intergenic | 40.0% | |
| ACAAGGCCAGATTCTGTATT+TGG | - | chr1_4:49608197-49608216 | Msa0167660:intron | 40.0% | |
| !! | ATCTCCTTTGAAGCAGTCAA+TGG | + | chr1_4:49608236-49608255 | None:intergenic | 40.0% |
| !!! | TCCCTACTTTTTGCTTACTC+TGG | - | chr1_4:49608308-49608327 | Msa0167660:intron | 40.0% |
| TAAGGAAAAGCTCGTACTTC+AGG | + | chr1_4:49608454-49608473 | None:intergenic | 40.0% | |
| GGTGCAAATCTAAATAGGTC+AGG | - | chr1_4:49608595-49608614 | Msa0167660:CDS | 40.0% | |
| AAATAGGTCAGGAATCAGGA+TGG | - | chr1_4:49608606-49608625 | Msa0167660:CDS | 40.0% | |
| CAAAACGAGGCATATTTGCA+GGG | + | chr1_4:49608713-49608732 | None:intergenic | 40.0% | |
| GGTCATTGATCTAAATCGGA+TGG | + | chr1_4:49608826-49608845 | None:intergenic | 40.0% | |
| TTGTTTGTGATGGCAATGCG+TGG | - | chr1_4:49602884-49602903 | Msa0167660:three_prime_UTR | 45.0% | |
| ACTCTTCGGGAAGAAACAAG+AGG | + | chr1_4:49603001-49603020 | None:intergenic | 45.0% | |
| ACCAGTGACAACTACTCTTC+GGG | + | chr1_4:49603014-49603033 | None:intergenic | 45.0% | |
| TTATGGACTCCACAACCAAG+AGG | + | chr1_4:49603131-49603150 | None:intergenic | 45.0% | |
| CTCTCTCAAGTAGTCTCCTA+GGG | - | chr1_4:49603707-49603726 | Msa0167660:intron | 45.0% | |
| TCTCTCAAGTAGTCTCCTAG+GGG | - | chr1_4:49603708-49603727 | Msa0167660:intron | 45.0% | |
| ATCTACTAGCATAGTCCCCT+AGG | + | chr1_4:49603726-49603745 | None:intergenic | 45.0% | |
| TCACGGATCGATGTTCCTAA+GGG | + | chr1_4:49604087-49604106 | None:intergenic | 45.0% | |
| ! | TAATTGGTTTCCCACTGAGC+AGG | - | chr1_4:49604159-49604178 | Msa0167660:intron | 45.0% |
| GCAGGAACACAAGGAAAGAA+CGG | - | chr1_4:49604177-49604196 | Msa0167660:intron | 45.0% | |
| GGCCACGTTAGCATGAAATA+TGG | - | chr1_4:49604571-49604590 | Msa0167660:intron | 45.0% | |
| TAATGAGCTCCTGTAGTTGC+TGG | - | chr1_4:49604645-49604664 | Msa0167660:intron | 45.0% | |
| CAATCAGGACATATCTCAGG+TGG | - | chr1_4:49604990-49605009 | Msa0167660:intron | 45.0% | |
| ! | ATGATTTGGCCCCTGTATTC+AGG | + | chr1_4:49605182-49605201 | None:intergenic | 45.0% |
| GCTACTGGGTCACATTCTAT+TGG | - | chr1_4:49605220-49605239 | Msa0167660:intron | 45.0% | |
| GATGCAGATGTTATGGTGAC+TGG | - | chr1_4:49605271-49605290 | Msa0167660:intron | 45.0% | |
| CCATCTCGACCACTATCAAA+GGG | + | chr1_4:49605499-49605518 | None:intergenic | 45.0% | |
| TCCATCTCGACCACTATCAA+AGG | + | chr1_4:49605500-49605519 | None:intergenic | 45.0% | |
| GAAGGAGAACAGGAATTGGA+AGG | + | chr1_4:49605725-49605744 | None:intergenic | 45.0% | |
| CTTGAGCATGCTAAAAACCG+AGG | - | chr1_4:49605798-49605817 | Msa0167660:CDS | 45.0% | |
| !!! | CTGCATAGATTTTGGCTCCT+CGG | + | chr1_4:49605818-49605837 | None:intergenic | 45.0% |
| TATGCAGAGATTCGTGGCTA+TGG | - | chr1_4:49605831-49605850 | Msa0167660:intron | 45.0% | |
| ATGCAGAGATTCGTGGCTAT+GGG | - | chr1_4:49605832-49605851 | Msa0167660:intron | 45.0% | |
| TGAGTCTAACTCAACCCCAA+AGG | + | chr1_4:49606148-49606167 | None:intergenic | 45.0% | |
| AGGCTCGACCTCTTAGAATT+TGG | + | chr1_4:49606174-49606193 | None:intergenic | 45.0% | |
| ! | TGACCACTATTCAAGCATCG+AGG | - | chr1_4:49606297-49606316 | Msa0167660:CDS | 45.0% |
| AGACCTCGATGCTTGAATAG+TGG | + | chr1_4:49606303-49606322 | None:intergenic | 45.0% | |
| !! | ACTATTCAAGCATCGAGGTC+TGG | - | chr1_4:49606302-49606321 | Msa0167660:CDS | 45.0% |
| TGATGTCAAGTCGTCAACCA+GGG | + | chr1_4:49606354-49606373 | None:intergenic | 45.0% | |
| AGTAGCCACAGTGACATTGA+TGG | + | chr1_4:49606428-49606447 | None:intergenic | 45.0% | |
| TAAGCTTGGCTATTTGGCGA+TGG | - | chr1_4:49606451-49606470 | Msa0167660:CDS | 45.0% | |
| !!! | TTTTGTGAAGAGTGGTGGGT+GGG | + | chr1_4:49606525-49606544 | None:intergenic | 45.0% |
| AACTAGCAGCTATAGCGTAG+TGG | - | chr1_4:49606571-49606590 | Msa0167660:CDS | 45.0% | |
| ACAACTGCAATGGCTGAAAC+TGG | + | chr1_4:49606669-49606688 | None:intergenic | 45.0% | |
| TTCAGCCATTGCAGTTGTAG+TGG | - | chr1_4:49606671-49606690 | Msa0167660:intron | 45.0% | |
| TACTGCCACTACAACTGCAA+TGG | + | chr1_4:49606679-49606698 | None:intergenic | 45.0% | |
| TTGCGGACCCTAGAAATTCT+GGG | + | chr1_4:49606709-49606728 | None:intergenic | 45.0% | |
| TTTGCGGACCCTAGAAATTC+TGG | + | chr1_4:49606710-49606729 | None:intergenic | 45.0% | |
| ! | ACTTTTGCCACAACCAGTAC+TGG | - | chr1_4:49606941-49606960 | Msa0167660:intron | 45.0% |
| ! | TAAGGGTGTGTTTGGATGGA+GGG | - | chr1_4:49607117-49607136 | Msa0167660:intron | 45.0% |
| GTTTGGATGGAGGGTTTAGA+AGG | - | chr1_4:49607126-49607145 | Msa0167660:intron | 45.0% | |
| TTGGATGGAGGGTTTAGAAG+GGG | - | chr1_4:49607128-49607147 | Msa0167660:intron | 45.0% | |
| TTGGATTGAGGGTTTAGGAG+GGG | + | chr1_4:49607332-49607351 | None:intergenic | 45.0% | |
| GTTTGGATTGAGGGTTTAGG+AGG | + | chr1_4:49607334-49607353 | None:intergenic | 45.0% | |
| CTTAGGGTGTGTTTGGATTG+AGG | + | chr1_4:49607344-49607363 | None:intergenic | 45.0% | |
| GATCTGCTTCACTTGCCTAA+AGG | + | chr1_4:49607540-49607559 | None:intergenic | 45.0% | |
| GCTAGCATGGTCAGAGAATA+TGG | + | chr1_4:49607706-49607725 | None:intergenic | 45.0% | |
| CTAAAGAAGACGAGCTAGCA+TGG | + | chr1_4:49607719-49607738 | None:intergenic | 45.0% | |
| ! | TTTAGCCTTCTCATCCACCA+AGG | - | chr1_4:49607734-49607753 | Msa0167660:intron | 45.0% |
| ! | TCTTACCTTGGTGGATGAGA+AGG | + | chr1_4:49607742-49607761 | None:intergenic | 45.0% |
| GAGAGCTTTCATCTAAGAGG+GGG | + | chr1_4:49607832-49607851 | None:intergenic | 45.0% | |
| ! | GACATTTTGTGTGCGAGTCA+CGG | - | chr1_4:49608048-49608067 | Msa0167660:intron | 45.0% |
| ! | ACATTTTGTGTGCGAGTCAC+GGG | - | chr1_4:49608049-49608068 | Msa0167660:intron | 45.0% |
| AGTTAATGGAGCGATTCCCT+GGG | + | chr1_4:49608168-49608187 | None:intergenic | 45.0% | |
| ! | CATGCCATTGACTGCTTCAA+AGG | - | chr1_4:49608229-49608248 | Msa0167660:intron | 45.0% |
| !! | CTGGATCGGACTAGTAAGAT+AGG | - | chr1_4:49608327-49608346 | Msa0167660:intron | 45.0% |
| CTCTTGTAGAATAACGCCTG+GGG | + | chr1_4:49608368-49608387 | None:intergenic | 45.0% | |
| GCTCTTGTAGAATAACGCCT+GGG | + | chr1_4:49608369-49608388 | None:intergenic | 45.0% | |
| AGCTCTTGTAGAATAACGCC+TGG | + | chr1_4:49608370-49608389 | None:intergenic | 45.0% | |
| AGAGCTAACACATCATGCTG+AGG | - | chr1_4:49608384-49608403 | Msa0167660:intron | 45.0% | |
| GAACATCTGGCCATGATGTA+TGG | - | chr1_4:49608574-49608593 | Msa0167660:CDS | 45.0% | |
| CCAAAACGAGGCATATTTGC+AGG | + | chr1_4:49608714-49608733 | None:intergenic | 45.0% | |
| ! | CCTGCAAATATGCCTCGTTT+TGG | - | chr1_4:49608711-49608730 | Msa0167660:intron | 45.0% |
| CAGGGACTAAAACCAAAACG+AGG | + | chr1_4:49608726-49608745 | None:intergenic | 45.0% | |
| TTTGTGATGGCAATGCGTGG+CGG | - | chr1_4:49602887-49602906 | Msa0167660:three_prime_UTR | 50.0% | |
| ! | GGAACATCGCGAAGGGTTTT+GGG | - | chr1_4:49602908-49602927 | Msa0167660:three_prime_UTR | 50.0% |
| GAAGAAACAAGAGGAGGAGG+TGG | + | chr1_4:49602992-49603011 | None:intergenic | 50.0% | |
| CTTCGGGAAGAAACAAGAGG+AGG | + | chr1_4:49602998-49603017 | None:intergenic | 50.0% | |
| TCCCGAAGAGTAGTTGTCAC+TGG | - | chr1_4:49603010-49603029 | Msa0167660:three_prime_UTR | 50.0% | |
| ATGGTGACACCTCTTGGTTG+TGG | - | chr1_4:49603119-49603138 | Msa0167660:three_prime_UTR | 50.0% | |
| GGGAACAAGTGCAGCAACTT+TGG | + | chr1_4:49603270-49603289 | None:intergenic | 50.0% | |
| !! | TCACCAGGGTTAGTTCCAGT+GGG | + | chr1_4:49603290-49603309 | None:intergenic | 50.0% |
| !! | TTCACCAGGGTTAGTTCCAG+TGG | + | chr1_4:49603291-49603310 | None:intergenic | 50.0% |
| GCTCTCTCAAGTAGTCTCCT+AGG | - | chr1_4:49603706-49603725 | Msa0167660:intron | 50.0% | |
| GTCACGGATCGATGTTCCTA+AGG | + | chr1_4:49604088-49604107 | None:intergenic | 50.0% | |
| AGGAACATCGATCCGTGACA+AGG | - | chr1_4:49604089-49604108 | Msa0167660:CDS | 50.0% | |
| TCCTTGTGTTCCTGCTCAGT+GGG | + | chr1_4:49604172-49604191 | None:intergenic | 50.0% | |
| TTCCTTGTGTTCCTGCTCAG+TGG | + | chr1_4:49604173-49604192 | None:intergenic | 50.0% | |
| !! | AATCAGGGGGTGTCTATTGG+TGG | - | chr1_4:49604276-49604295 | Msa0167660:CDS | 50.0% |
| !! | ATCAGGGGGTGTCTATTGGT+GGG | - | chr1_4:49604277-49604296 | Msa0167660:CDS | 50.0% |
| ! | CTCCTTCCTACCTGTCACTT+CGG | - | chr1_4:49604928-49604947 | Msa0167660:intron | 50.0% |
| ATCCGAAGTGACAGGTAGGA+AGG | + | chr1_4:49604933-49604952 | None:intergenic | 50.0% | |
| GGCCCCTGTATTCAGGAATA+GGG | + | chr1_4:49605175-49605194 | None:intergenic | 50.0% | |
| TGGCCCCTGTATTCAGGAAT+AGG | + | chr1_4:49605176-49605195 | None:intergenic | 50.0% | |
| GCAGTGACTGCAGCATGATT+TGG | + | chr1_4:49605196-49605215 | None:intergenic | 50.0% | |
| ! | CAGTCACTGCTTGTGCTACT+GGG | - | chr1_4:49605206-49605225 | Msa0167660:intron | 50.0% |
| GCAGATGTTATGGTGACTGG+AGG | - | chr1_4:49605274-49605293 | Msa0167660:intron | 50.0% | |
| !! | CCCTTTGATAGTGGTCGAGA+TGG | - | chr1_4:49605496-49605515 | Msa0167660:intron | 50.0% |
| CTCAGGATAGGTGAAGGTTC+TGG | - | chr1_4:49605652-49605671 | Msa0167660:intron | 50.0% | |
| !! | AGGTGAAGGTTCTGGAGTCT+TGG | - | chr1_4:49605660-49605679 | Msa0167660:intron | 50.0% |
| !! | AGGTTCTGGAGTCTTGGTCT+TGG | - | chr1_4:49605666-49605685 | Msa0167660:intron | 50.0% |
| !! | TTCTGGAGTCTTGGTCTTGG+AGG | - | chr1_4:49605669-49605688 | Msa0167660:intron | 50.0% |
| ATTCGTGGCTATGGGATGTC+AGG | - | chr1_4:49605840-49605859 | Msa0167660:intron | 50.0% | |
| ! | AACCCCAAAGGCTAGCTCAT+GGG | + | chr1_4:49606136-49606155 | None:intergenic | 50.0% |
| !! | ATTCAAGCATCGAGGTCTGG+CGG | - | chr1_4:49606305-49606324 | Msa0167660:CDS | 50.0% |
| GTGATGTCAAGTCGTCAACC+AGG | + | chr1_4:49606355-49606374 | None:intergenic | 50.0% | |
| GACGACTTGACATCACCCAA+AGG | - | chr1_4:49606359-49606378 | Msa0167660:intron | 50.0% | |
| GGAAAAGACAAAGGGGGAGA+TGG | + | chr1_4:49606407-49606426 | None:intergenic | 50.0% | |
| !! | CTTTTGTGAAGAGTGGTGGG+TGG | + | chr1_4:49606526-49606545 | None:intergenic | 50.0% |
| TGCAGTTGTAGTGGCAGTAG+TGG | - | chr1_4:49606680-49606699 | Msa0167660:intron | 50.0% | |
| ATTTGAGTGAGCTGGCGCAT+TGG | + | chr1_4:49606744-49606763 | None:intergenic | 50.0% | |
| ! | CTAAGGGTGTGTTTGGATGG+AGG | - | chr1_4:49607116-49607135 | Msa0167660:intron | 50.0% |
| ATGGAGGGTTTAGAAGGGGA+AGG | - | chr1_4:49607132-49607151 | Msa0167660:intron | 50.0% | |
| TGGAGGGTTTAGAAGGGGAA+GGG | - | chr1_4:49607133-49607152 | Msa0167660:intron | 50.0% | |
| TTGAGGGTTTAGGAGGGGAA+GGG | + | chr1_4:49607327-49607346 | None:intergenic | 50.0% | |
| ATTGAGGGTTTAGGAGGGGA+AGG | + | chr1_4:49607328-49607347 | None:intergenic | 50.0% | |
| GTGAAGCAGATCCATCCTCA+CGG | - | chr1_4:49607548-49607567 | Msa0167660:intron | 50.0% | |
| ATTGCTGGAATCCGTGAGGA+TGG | + | chr1_4:49607562-49607581 | None:intergenic | 50.0% | |
| CTCATCCACCAAGGTAAGAG+TGG | - | chr1_4:49607743-49607762 | Msa0167660:intron | 50.0% | |
| TGCAACCACTCTTACCTTGG+TGG | + | chr1_4:49607751-49607770 | None:intergenic | 50.0% | |
| GCTTGCAACCACTCTTACCT+TGG | + | chr1_4:49607754-49607773 | None:intergenic | 50.0% | |
| !! | CACTGATTTCAGGGGGCTAT+TGG | - | chr1_4:49607950-49607969 | Msa0167660:intron | 50.0% |
| ! | CATTTTGTGTGCGAGTCACG+GGG | - | chr1_4:49608050-49608069 | Msa0167660:intron | 50.0% |
| GAGTTAATGGAGCGATTCCC+TGG | + | chr1_4:49608169-49608188 | None:intergenic | 50.0% | |
| GTGCATCTCATTCATTCCCC+AGG | - | chr1_4:49608349-49608368 | Msa0167660:intron | 50.0% | |
| ! | CGGAACATCGCGAAGGGTTT+TGG | - | chr1_4:49602907-49602926 | Msa0167660:three_prime_UTR | 55.0% |
| CGGGAAGAAACAAGAGGAGG+AGG | + | chr1_4:49602995-49603014 | None:intergenic | 55.0% | |
| TTGGGCATGGTGACACCTCT+TGG | - | chr1_4:49603113-49603132 | Msa0167660:three_prime_UTR | 55.0% | |
| GTTGCTGCACTTGTTCCCAC+TGG | - | chr1_4:49603272-49603291 | Msa0167660:three_prime_UTR | 55.0% | |
| GTTCCCACTGGAACTAACCC+TGG | - | chr1_4:49603284-49603303 | Msa0167660:three_prime_UTR | 55.0% | |
| GCAATGGCAGCTTTGCACCA+TGG | + | chr1_4:49603784-49603803 | None:intergenic | 55.0% | |
| TCCCACTGAGCAGGAACACA+AGG | - | chr1_4:49604168-49604187 | Msa0167660:intron | 55.0% | |
| !! | TCAGGGGGTGTCTATTGGTG+GGG | - | chr1_4:49604278-49604297 | Msa0167660:CDS | 55.0% |
| GTGTCTATTGGTGGGGGAAC+TGG | - | chr1_4:49604285-49604304 | Msa0167660:CDS | 55.0% | |
| CGCTGCATACAGGGGAGAAT+AGG | + | chr1_4:49604496-49604515 | None:intergenic | 55.0% | |
| GACGAAGACGCTGCATACAG+GGG | + | chr1_4:49604504-49604523 | None:intergenic | 55.0% | |
| CGACGAAGACGCTGCATACA+GGG | + | chr1_4:49604505-49604524 | None:intergenic | 55.0% | |
| AGCTCCTGTAGTTGCTGGAC+AGG | - | chr1_4:49604650-49604669 | Msa0167660:intron | 55.0% | |
| GTTGCCTGTCCAGCAACTAC+AGG | + | chr1_4:49604657-49604676 | None:intergenic | 55.0% | |
| GCAGTCACTGCTTGTGCTAC+TGG | - | chr1_4:49605205-49605224 | Msa0167660:intron | 55.0% | |
| !! | CAAGCCCACAAGAAGCATCG+CGG | - | chr1_4:49605473-49605492 | Msa0167660:intron | 55.0% |
| ! | CAACCTCCTAGTGATGGGAG+AGG | - | chr1_4:49605967-49605986 | Msa0167660:CDS | 55.0% |
| ATGGCACCTCTCCCATCACT+AGG | + | chr1_4:49605976-49605995 | None:intergenic | 55.0% | |
| !! | TGATGGGAGAGGTGCCATTC+TGG | - | chr1_4:49605978-49605997 | Msa0167660:intron | 55.0% |
| AGCACGAGTCATGGCCAGAA+TGG | + | chr1_4:49605995-49606014 | None:intergenic | 55.0% | |
| ! | AAGGCTAGCTCATGGGGTGA+GGG | + | chr1_4:49606129-49606148 | None:intergenic | 55.0% |
| ! | AAAGGCTAGCTCATGGGGTG+AGG | + | chr1_4:49606130-49606149 | None:intergenic | 55.0% |
| !! | TCACCCCATGAGCTAGCCTT+TGG | - | chr1_4:49606129-49606148 | Msa0167660:intron | 55.0% |
| !! | CACCCCATGAGCTAGCCTTT+GGG | - | chr1_4:49606130-49606149 | Msa0167660:intron | 55.0% |
| !! | ACCCCATGAGCTAGCCTTTG+GGG | - | chr1_4:49606131-49606150 | Msa0167660:intron | 55.0% |
| ! | ACCCCAAAGGCTAGCTCATG+GGG | + | chr1_4:49606135-49606154 | None:intergenic | 55.0% |
| ! | CAACCCCAAAGGCTAGCTCA+TGG | + | chr1_4:49606137-49606156 | None:intergenic | 55.0% |
| AGGGCAAGAGCTAAGGCTTG+AGG | + | chr1_4:49606194-49606213 | None:intergenic | 55.0% | |
| TTGGGAGAGGGCAAGAGCTA+AGG | + | chr1_4:49606201-49606220 | None:intergenic | 55.0% | |
| !! | AGGTCTGGCGGTTTTGGCAA+TGG | - | chr1_4:49606317-49606336 | Msa0167660:CDS | 55.0% |
| CAATGGAAGCTTGTCCACCC+TGG | - | chr1_4:49606334-49606353 | Msa0167660:intron | 55.0% | |
| TGTCAAGTCGTCAACCAGGG+TGG | + | chr1_4:49606351-49606370 | None:intergenic | 55.0% | |
| GAGCTGGCGCATTGGACATA+GGG | + | chr1_4:49606736-49606755 | None:intergenic | 55.0% | |
| TGAGCTGGCGCATTGGACAT+AGG | + | chr1_4:49606737-49606756 | None:intergenic | 55.0% | |
| AGGGTTTAGAAGGGGAAGGG+AGG | - | chr1_4:49607136-49607155 | Msa0167660:intron | 55.0% | |
| GGGTTTAGAAGGGGAAGGGA+GGG | - | chr1_4:49607137-49607156 | Msa0167660:intron | 55.0% | |
| GGTTTAGAAGGGGAAGGGAG+GGG | - | chr1_4:49607138-49607157 | Msa0167660:intron | 55.0% | |
| GGGGCTATTGGTCATCTCCT+TGG | - | chr1_4:49607962-49607981 | Msa0167660:intron | 55.0% | |
| !! | TGGGGTAAGGGCACTGCGTT+TGG | - | chr1_4:49603181-49603200 | Msa0167660:three_prime_UTR | 60.0% |
| !! | GGTAAGGGCACTGCGTTTGG+AGG | - | chr1_4:49603184-49603203 | Msa0167660:three_prime_UTR | 60.0% |
| !! | CAGGGGGTGTCTATTGGTGG+GGG | - | chr1_4:49604279-49604298 | Msa0167660:CDS | 60.0% |
| GCGACGAAGACGCTGCATAC+AGG | + | chr1_4:49604506-49604525 | None:intergenic | 60.0% | |
| AGGGCCGCGATGCTTCTTGT+GGG | + | chr1_4:49605480-49605499 | None:intergenic | 60.0% | |
| AAGGGCCGCGATGCTTCTTG+TGG | + | chr1_4:49605481-49605500 | None:intergenic | 60.0% | |
| GCATCGCGGCCCTTTGATAG+TGG | - | chr1_4:49605487-49605506 | Msa0167660:intron | 60.0% | |
| GCACCTCTCCCATCACTAGG+AGG | + | chr1_4:49605973-49605992 | None:intergenic | 60.0% | |
| ! | GCATCGAGGTCTGGCGGTTT+TGG | - | chr1_4:49606311-49606330 | Msa0167660:CDS | 60.0% |
| TTAGAAGGGGAAGGGAGGGG+AGG | - | chr1_4:49607141-49607160 | Msa0167660:intron | 60.0% | |
| TAGAAGGGGAAGGGAGGGGA+GGG | - | chr1_4:49607142-49607161 | Msa0167660:intron | 60.0% | |
| GGTTTAGGAGGGGAAGGGAG+GGG | + | chr1_4:49607322-49607341 | None:intergenic | 60.0% | |
| GGGTTTAGGAGGGGAAGGGA+GGG | + | chr1_4:49607323-49607342 | None:intergenic | 60.0% | |
| AGGGTTTAGGAGGGGAAGGG+AGG | + | chr1_4:49607324-49607343 | None:intergenic | 60.0% | |
| !! | GGTCATCTCCTTGGTGCTGC+TGG | - | chr1_4:49607971-49607990 | Msa0167660:intron | 60.0% |
| CAACAGCTCCAGCAGCACCA+AGG | + | chr1_4:49607982-49608001 | None:intergenic | 60.0% | |
| ! | TGCGTGGCGGAACATCGCGA+AGG | - | chr1_4:49602900-49602919 | Msa0167660:three_prime_UTR | 65.0% |
| ! | GCGTGGCGGAACATCGCGAA+GGG | - | chr1_4:49602901-49602920 | Msa0167660:three_prime_UTR | 65.0% |
| TTAGGAGGGGAAGGGAGGGG+AGG | + | chr1_4:49607319-49607338 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 49602873 | 49608917 | 49602873 | ID=Msa0167660;Name=Msa0167660 |
| chr1_4 | mRNA | 49602873 | 49608917 | 49602873 | ID=Msa0167660-mRNA-1;Parent=Msa0167660;Name=Msa0167660-mRNA-1;_AED=0.09;_eAED=0.09;_QI=20|0.85|0.93|0.93|1|1|15|577|494 |
| chr1_4 | exon | 49602873 | 49603620 | 49602873 | ID=Msa0167660-mRNA-1:exon:14658;Parent=Msa0167660-mRNA-1 |
| chr1_4 | exon | 49603757 | 49603828 | 49603757 | ID=Msa0167660-mRNA-1:exon:14657;Parent=Msa0167660-mRNA-1 |
| chr1_4 | exon | 49604035 | 49604117 | 49604035 | ID=Msa0167660-mRNA-1:exon:14656;Parent=Msa0167660-mRNA-1 |
| chr1_4 | exon | 49604247 | 49604307 | 49604247 | ID=Msa0167660-mRNA-1:exon:14655;Parent=Msa0167660-mRNA-1 |
| chr1_4 | exon | 49604652 | 49604702 | 49604652 | ID=Msa0167660-mRNA-1:exon:14654;Parent=Msa0167660-mRNA-1 |
| chr1_4 | exon | 49605767 | 49605843 | 49605767 | ID=Msa0167660-mRNA-1:exon:14653;Parent=Msa0167660-mRNA-1 |
| chr1_4 | exon | 49605929 | 49605995 | 49605929 | ID=Msa0167660-mRNA-1:exon:14652;Parent=Msa0167660-mRNA-1 |
| chr1_4 | exon | 49606100 | 49606133 | 49606100 | ID=Msa0167660-mRNA-1:exon:14651;Parent=Msa0167660-mRNA-1 |
| chr1_4 | exon | 49606266 | 49606346 | 49606266 | ID=Msa0167660-mRNA-1:exon:14650;Parent=Msa0167660-mRNA-1 |
| chr1_4 | exon | 49606449 | 49606600 | 49606449 | ID=Msa0167660-mRNA-1:exon:14649;Parent=Msa0167660-mRNA-1 |
| chr1_4 | exon | 49607190 | 49607276 | 49607190 | ID=Msa0167660-mRNA-1:exon:14648;Parent=Msa0167660-mRNA-1 |
| chr1_4 | exon | 49607437 | 49607508 | 49607437 | ID=Msa0167660-mRNA-1:exon:14647;Parent=Msa0167660-mRNA-1 |
| chr1_4 | exon | 49607592 | 49607699 | 49607592 | ID=Msa0167660-mRNA-1:exon:14646;Parent=Msa0167660-mRNA-1 |
| chr1_4 | exon | 49608450 | 49608679 | 49608450 | ID=Msa0167660-mRNA-1:exon:14645;Parent=Msa0167660-mRNA-1 |
| chr1_4 | exon | 49608759 | 49608917 | 49608759 | ID=Msa0167660-mRNA-1:exon:14644;Parent=Msa0167660-mRNA-1 |
| chr1_4 | five_prime_UTR | 49608898 | 49608917 | 49608898 | ID=Msa0167660-mRNA-1:five_prime_utr;Parent=Msa0167660-mRNA-1 |
| chr1_4 | CDS | 49608759 | 49608897 | 49608759 | ID=Msa0167660-mRNA-1:cds;Parent=Msa0167660-mRNA-1 |
| chr1_4 | CDS | 49608450 | 49608679 | 49608450 | ID=Msa0167660-mRNA-1:cds;Parent=Msa0167660-mRNA-1 |
| chr1_4 | CDS | 49607592 | 49607699 | 49607592 | ID=Msa0167660-mRNA-1:cds;Parent=Msa0167660-mRNA-1 |
| chr1_4 | CDS | 49607437 | 49607508 | 49607437 | ID=Msa0167660-mRNA-1:cds;Parent=Msa0167660-mRNA-1 |
| chr1_4 | CDS | 49607190 | 49607276 | 49607190 | ID=Msa0167660-mRNA-1:cds;Parent=Msa0167660-mRNA-1 |
| chr1_4 | CDS | 49606449 | 49606600 | 49606449 | ID=Msa0167660-mRNA-1:cds;Parent=Msa0167660-mRNA-1 |
| chr1_4 | CDS | 49606266 | 49606346 | 49606266 | ID=Msa0167660-mRNA-1:cds;Parent=Msa0167660-mRNA-1 |
| chr1_4 | CDS | 49606100 | 49606133 | 49606100 | ID=Msa0167660-mRNA-1:cds;Parent=Msa0167660-mRNA-1 |
| chr1_4 | CDS | 49605929 | 49605995 | 49605929 | ID=Msa0167660-mRNA-1:cds;Parent=Msa0167660-mRNA-1 |
| chr1_4 | CDS | 49605767 | 49605843 | 49605767 | ID=Msa0167660-mRNA-1:cds;Parent=Msa0167660-mRNA-1 |
| chr1_4 | CDS | 49604652 | 49604702 | 49604652 | ID=Msa0167660-mRNA-1:cds;Parent=Msa0167660-mRNA-1 |
| chr1_4 | CDS | 49604247 | 49604307 | 49604247 | ID=Msa0167660-mRNA-1:cds;Parent=Msa0167660-mRNA-1 |
| chr1_4 | CDS | 49604035 | 49604117 | 49604035 | ID=Msa0167660-mRNA-1:cds;Parent=Msa0167660-mRNA-1 |
| chr1_4 | CDS | 49603757 | 49603828 | 49603757 | ID=Msa0167660-mRNA-1:cds;Parent=Msa0167660-mRNA-1 |
| chr1_4 | CDS | 49603450 | 49603620 | 49603450 | ID=Msa0167660-mRNA-1:cds;Parent=Msa0167660-mRNA-1 |
| chr1_4 | three_prime_UTR | 49602873 | 49603449 | 49602873 | ID=Msa0167660-mRNA-1:three_prime_utr;Parent=Msa0167660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
