AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0367370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0367370 MtrunA17_Chr3g0108671 96.759 216 7 0 1 216 1 216 2.79e-157 434
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0367370 AT5G58250.1 78.417 139 30 0 75 213 70 208 7.94e-78 233

Find 81 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTATGTTTCTTGAAATTT+TGG 0.123031 3_1:+63044205 None:intergenic
CACCATCCAGATTCATATTT+AGG 0.173330 3_1:+63042186 None:intergenic
TTATTTAATGGCATATAAAA+AGG 0.213471 3_1:-63041735 None:intergenic
GACGTTCAAATAGTTGTTCT+TGG 0.266567 3_1:+63043435 None:intergenic
TGTCATTGAGCCTAAATTCT+TGG 0.289570 3_1:-63043369 Msa0367370:CDS
GACGTCAAAGATGAGATATT+TGG 0.293677 3_1:-63041826 Msa0367370:three_prime_UTR
TCCCATTCTGTTTCGGTAAC+CGG 0.301414 3_1:-63042110 Msa0367370:three_prime_UTR
GAAGCAACAGCAGTGATAAA+AGG 0.313085 3_1:+63044183 None:intergenic
GGAAAACTATCCAAGAATTT+AGG 0.316224 3_1:+63043359 None:intergenic
AGCAGGTCTCCGCAGTTTCT+TGG 0.317045 3_1:+63043328 None:intergenic
TTTGAACGTCGTCGCTACTA+TGG 0.318798 3_1:-63043422 Msa0367370:CDS
TCACTCTTTACCAATGAGTT+TGG 0.337284 3_1:-63044241 Msa0367370:CDS
AGAAATAGATCTACAAATTC+CGG 0.337387 3_1:+63042091 None:intergenic
AAAGAGAGAGTGGGACAATT+CGG 0.347665 3_1:+63044502 None:intergenic
AGATGTGTAGAGAGAGTGAT+AGG 0.349551 3_1:+63044426 None:intergenic
AAGAGAGAGTGGGACAATTC+GGG 0.353111 3_1:+63044503 None:intergenic
GTCCTTAGGATCTAAGTTCT+AGG 0.357771 3_1:-63041961 Msa0367370:three_prime_UTR
GTAATAAAGAACAGGATTAC+TGG 0.370944 3_1:-63043394 Msa0367370:CDS
TGCTGTTGCTTCTGTTCAAT+CGG 0.371485 3_1:-63044172 Msa0367370:CDS
CCCTATCCTAAATATGAATC+TGG 0.374851 3_1:-63042192 Msa0367370:CDS
ATCTATATTTCACTCATTTG+AGG 0.401260 3_1:+63041925 None:intergenic
CGCAGTTTCTTGGTAAAGTC+AGG 0.410742 3_1:+63043338 None:intergenic
ACGATATCTAACACGCAGTC+GGG 0.422700 3_1:+63041865 None:intergenic
TTCTCAAATTCCAGCTTAGT+AGG 0.423773 3_1:+63042234 None:intergenic
AAAGTTGAATTGTTGTCCTT+AGG 0.425099 3_1:-63041975 Msa0367370:three_prime_UTR
AAATTCCAGCTTAGTAGGAT+TGG 0.428131 3_1:+63042239 None:intergenic
TGGGAAACTTTCTTGCCCTC+TGG 0.443007 3_1:-63042165 Msa0367370:CDS
AATTTGAGAAGCCTGCAAAA+TGG 0.444037 3_1:-63042221 Msa0367370:CDS
CCAGATTCATATTTAGGATA+GGG 0.459432 3_1:+63042192 None:intergenic
CTTGCCCTCTGGACAGAAAG+AGG 0.461986 3_1:-63042154 Msa0367370:CDS
GGCAATTGGCAAAGAGAGAG+TGG 0.462145 3_1:+63044492 None:intergenic
TGCAACAATAAAATAATACT+TGG 0.464259 3_1:+63043493 None:intergenic
AACAAGATTTAGCAAGATGC+TGG 0.464844 3_1:-63044355 Msa0367370:exon
TAGATTTAGATAACTAGATA+AGG 0.465602 3_1:-63044542 Msa0367370:five_prime_UTR
GACAATTCGGGGAGATATCA+TGG 0.474491 3_1:+63044515 None:intergenic
CAGATTCATGAAATTAAGAC+TGG 0.474576 3_1:-63042316 Msa0367370:CDS
TGGAGAGCGTAATAAAGAAC+AGG 0.479792 3_1:-63043402 Msa0367370:CDS
GAGTGGAGAAAGATGGCAAT+TGG 0.484031 3_1:+63044478 None:intergenic
TGGTAAAGAGTGAGTTCTGT+TGG 0.489477 3_1:+63044251 None:intergenic
TTCCGGTTACCGAAACAGAA+TGG 0.489581 3_1:+63042108 None:intergenic
TCCGGTTACCGAAACAGAAT+GGG 0.495230 3_1:+63042109 None:intergenic
TAGTGTCAACCAACGGTCCA+TGG 0.496162 3_1:-63043298 Msa0367370:CDS
TATAAAGCTTGTGTAAAGGC+TGG 0.497846 3_1:-63041799 Msa0367370:three_prime_UTR
GTAGGAGAGACCAAACTCAT+TGG 0.500788 3_1:+63044231 None:intergenic
ATTTGAGAAGCCTGCAAAAT+GGG 0.501452 3_1:-63042220 Msa0367370:CDS
GAAAAGGAAACCTTGGTGGC+AGG 0.503309 3_1:+63044126 None:intergenic
TTCCAGCTTAGTAGGATTGG+AGG 0.503729 3_1:+63042242 None:intergenic
TTTAGCAAGATGCTGGGCAT+GGG 0.509113 3_1:-63044348 Msa0367370:exon
TCCAGATTCATATTTAGGAT+AGG 0.511889 3_1:+63042191 None:intergenic
AATGAAATAAAAGTAAAGTA+AGG 0.512664 3_1:-63044565 None:intergenic
AGCCTCCAATCCTACTAAGC+TGG 0.514208 3_1:-63042244 Msa0367370:CDS
GTTTGAGCTACCATTGTAGT+TGG 0.518753 3_1:+63044306 None:intergenic
TAAATATGAATCTGGATGGT+GGG 0.520478 3_1:-63042184 Msa0367370:CDS
TACCTAGAACTTAGATCCTA+AGG 0.520854 3_1:+63041959 None:intergenic
ATTTAGCAAGATGCTGGGCA+TGG 0.522000 3_1:-63044349 Msa0367370:exon
TTCTGATGCTCCTGCCACCA+AGG 0.526069 3_1:-63044136 Msa0367370:intron
TCATGTTCTTACGTGATCCA+TGG 0.536324 3_1:+63043281 None:intergenic
ATTATATAAAGCTTGTGTAA+AGG 0.547757 3_1:-63041803 Msa0367370:three_prime_UTR
TTACGTGATCCATGGACCGT+TGG 0.559376 3_1:+63043289 None:intergenic
CTAAATATGAATCTGGATGG+TGG 0.563124 3_1:-63042185 Msa0367370:CDS
TTCACCTCTTTCTGTCCAGA+GGG 0.563494 3_1:+63042150 None:intergenic
CAGCAAAGAGTGGAGAAAGA+TGG 0.569234 3_1:+63044471 None:intergenic
AAAATTTATGCTCGATGAGG+AGG 0.586681 3_1:-63043465 Msa0367370:CDS
CGATATCTAACACGCAGTCG+GGG 0.587795 3_1:+63041866 None:intergenic
CACGATATCTAACACGCAGT+CGG 0.588285 3_1:+63041864 None:intergenic
TGCAAAATTTATGCTCGATG+AGG 0.591381 3_1:-63043468 Msa0367370:CDS
GTTCACCTCTTTCTGTCCAG+AGG 0.591448 3_1:+63042149 None:intergenic
TTAGCAAGATGCTGGGCATG+GGG 0.598167 3_1:-63044347 Msa0367370:exon
AAGAGAAAAGGAAACCTTGG+TGG 0.605790 3_1:+63044122 None:intergenic
ATCCTAAATATGAATCTGGA+TGG 0.610093 3_1:-63042188 Msa0367370:CDS
ACAAGATTTAGCAAGATGCT+GGG 0.611234 3_1:-63044354 Msa0367370:exon
TTTGAGTTCACCAACTACAA+TGG 0.618572 3_1:-63044316 Msa0367370:CDS
GCAATTGGCAAAGAGAGAGT+GGG 0.634379 3_1:+63044493 None:intergenic
GTTATGACAACAGCAAAGAG+TGG 0.634462 3_1:+63044461 None:intergenic
AGAGAGAGTGGGACAATTCG+GGG 0.641985 3_1:+63044504 None:intergenic
AAGCTTGTGTAAAGGCTGGA+TGG 0.645445 3_1:-63041795 Msa0367370:three_prime_UTR
TGAGAAGCCTGCAAAATGGG+TGG 0.654553 3_1:-63042217 Msa0367370:CDS
GTTGACACTAGAGCAACAGC+AGG 0.658553 3_1:+63043311 None:intergenic
TGTGATAAGATAACGCACAA+AGG 0.658969 3_1:+63044383 None:intergenic
GTTGCTCTAGTGTCAACCAA+CGG 0.671470 3_1:-63043305 Msa0367370:CDS
CTGACTTTACCAAGAAACTG+CGG 0.676341 3_1:-63043337 Msa0367370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTTGTTATTTTAAGTA+TGG - chr3_1:63042588-63042607 Msa0367370:intron 10.0%
!! TTATAAATCATCAATAACAA+TGG + chr3_1:63042687-63042706 None:intergenic 15.0%
!!! TTTATATTTGAAATGAGATT+TGG - chr3_1:63043175-63043194 Msa0367370:intron 15.0%
!! AATAAAAATTGTAAGAAAGA+AGG - chr3_1:63043845-63043864 Msa0367370:intron 15.0%
!! ATAAAAATTGTAAGAAAGAA+GGG - chr3_1:63043846-63043865 Msa0367370:intron 15.0%
!! TTTACATTAACAAAAATTGT+TGG + chr3_1:63044223-63044242 None:intergenic 15.0%
!!! AATTTTTGTTAATGTAAAAC+TGG - chr3_1:63044225-63044244 Msa0367370:CDS 15.0%
!!! AGTTTACACTTTTTATTTAA+TGG - chr3_1:63044541-63044560 Msa0367370:five_prime_UTR 15.0%
!! TAGATTTAGATAACTAGATA+AGG - chr3_1:63041746-63041765 Msa0367370:three_prime_UTR 20.0%
!!! GTTTATGTTTCTTGAAATTT+TGG + chr3_1:63042086-63042105 None:intergenic 20.0%
!! AAAACAGATAGTAATAATGT+GGG + chr3_1:63042199-63042218 None:intergenic 20.0%
!!! TGTTATTTTAAGTATGGAAT+TGG - chr3_1:63042594-63042613 Msa0367370:intron 20.0%
!!! TATTGATGATTTATAAGCAT+TGG - chr3_1:63042691-63042710 Msa0367370:intron 20.0%
!! TGCAACAATAAAATAATACT+TGG + chr3_1:63042798-63042817 None:intergenic 20.0%
!!! TTTTGTTATTTGCCATATAT+TGG - chr3_1:63043256-63043275 Msa0367370:intron 20.0%
!! AATTAAAAAAAACGAACCAT+CGG - chr3_1:63043539-63043558 Msa0367370:intron 20.0%
!! ATTATATAAAGCTTGTGTAA+AGG - chr3_1:63044485-63044504 Msa0367370:five_prime_UTR 20.0%
!!! TTCTTGAAATTTTGGTTTGT+AGG + chr3_1:63042078-63042097 None:intergenic 25.0%
! CAAAACAGATAGTAATAATG+TGG + chr3_1:63042200-63042219 None:intergenic 25.0%
!! GATCAAGGATTTTCAATTTT+AGG + chr3_1:63042367-63042386 None:intergenic 25.0%
! GTTTGACAAAAAAATTGTTC+AGG + chr3_1:63042449-63042468 None:intergenic 25.0%
! AACTACTACAATTTCATTTC+AGG - chr3_1:63042619-63042638 Msa0367370:intron 25.0%
! TATTTGCCATATATTGGATT+TGG - chr3_1:63043262-63043281 Msa0367370:intron 25.0%
! ATTTGCCATATATTGGATTT+GGG - chr3_1:63043263-63043282 Msa0367370:intron 25.0%
!! CATCTTTTCAATACTATTAG+TGG + chr3_1:63043305-63043324 None:intergenic 25.0%
!!! GTTCGTTTTTTTTAATTGTG+GGG + chr3_1:63043536-63043555 None:intergenic 25.0%
!!! GGTTCGTTTTTTTTAATTGT+GGG + chr3_1:63043537-63043556 None:intergenic 25.0%
!!! TGGTTCGTTTTTTTTAATTG+TGG + chr3_1:63043538-63043557 None:intergenic 25.0%
!! AATAACTTGGATTTTAAGCT+CGG + chr3_1:63043628-63043647 None:intergenic 25.0%
! TAAAAGTAGAGATGCAAAAA+GGG + chr3_1:63043775-63043794 None:intergenic 25.0%
! TCATATTATACCACTTGAAA+GGG + chr3_1:63043826-63043845 None:intergenic 25.0%
! TTCATATTATACCACTTGAA+AGG + chr3_1:63043827-63043846 None:intergenic 25.0%
! GCTGTCAACATATAATAAAA+TGG - chr3_1:63043897-63043916 Msa0367370:intron 25.0%
!!! ATTTTTTTCCCATTCTGTTT+CGG - chr3_1:63044171-63044190 Msa0367370:CDS 25.0%
! AGAAATAGATCTACAAATTC+CGG + chr3_1:63044200-63044219 None:intergenic 25.0%
!!! GCTTTCAGTTTTGTAATTTT+TGG - chr3_1:63044272-63044291 Msa0367370:CDS 25.0%
!!! TCAGTTTTGTAATTTTTGGA+AGG - chr3_1:63044276-63044295 Msa0367370:CDS 25.0%
! ATCTATATTTCACTCATTTG+AGG + chr3_1:63044366-63044385 None:intergenic 25.0%
!! AACTATGTGTCTTTTAGAAG+AGG + chr3_1:63042016-63042035 None:intergenic 30.0%
ATGATCCTACAATATGAATG+TGG - chr3_1:63042261-63042280 Msa0367370:CDS 30.0%
TCTAACCACATTCATATTGT+AGG + chr3_1:63042269-63042288 None:intergenic 30.0%
CAATATGAATGTGGTTAGAA+TGG - chr3_1:63042270-63042289 Msa0367370:CDS 30.0%
! GTTTACACATGCAATTTTGA+AGG + chr3_1:63042339-63042358 None:intergenic 30.0%
AAACTGACATAATGTGATCA+AGG + chr3_1:63042382-63042401 None:intergenic 30.0%
! TTCTTCTAAAGACCACTTTA+GGG + chr3_1:63042408-63042427 None:intergenic 30.0%
GTCAAACTTTACTTAACTTC+TGG - chr3_1:63042462-63042481 Msa0367370:intron 30.0%
TTTCATTTCAGGAACTGAAA+TGG - chr3_1:63042630-63042649 Msa0367370:intron 30.0%
!!! ACTTATTGAGTTGGTTTTTG+TGG - chr3_1:63042725-63042744 Msa0367370:intron 30.0%
GTAATAAAGAACAGGATTAC+TGG - chr3_1:63042894-63042913 Msa0367370:intron 30.0%
GGAAAACTATCCAAGAATTT+AGG + chr3_1:63042932-63042951 None:intergenic 30.0%
!! ATTCTTCATTTTTCAGTGCT+TGG - chr3_1:63043034-63043053 Msa0367370:intron 30.0%
! CTGTCATAAACTTTGAAAAG+TGG - chr3_1:63043062-63043081 Msa0367370:intron 30.0%
TGAAAAGTGGACAATTCATT+TGG - chr3_1:63043075-63043094 Msa0367370:intron 30.0%
ATCGTTGGATTAAAATCAGA+CGG - chr3_1:63043139-63043158 Msa0367370:intron 30.0%
GTCATTGTCTTAAGATCAAA+CGG + chr3_1:63043217-63043236 None:intergenic 30.0%
TTTGATCTTAAGACAATGAC+TGG - chr3_1:63043217-63043236 Msa0367370:intron 30.0%
TTGATCTTAAGACAATGACT+GGG - chr3_1:63043218-63043237 Msa0367370:intron 30.0%
!! TACTATTAGTGGACTCTAAA+AGG + chr3_1:63043294-63043313 None:intergenic 30.0%
!! GTTTAATTTTCTCTTGTTGC+TGG + chr3_1:63043354-63043373 None:intergenic 30.0%
TAGCTTATGAGGTTAACTAT+AGG + chr3_1:63043442-63043461 None:intergenic 30.0%
AGACATCTATGTTAGCTATT+AGG + chr3_1:63043467-63043486 None:intergenic 30.0%
! ATAACTTGGATTTTAAGCTC+GGG + chr3_1:63043627-63043646 None:intergenic 30.0%
! TTTTTCTTTTTACCCCTTAG+AGG - chr3_1:63043715-63043734 Msa0367370:intron 30.0%
CTAAAAGTAGAGATGCAAAA+AGG + chr3_1:63043776-63043795 None:intergenic 30.0%
CAGATTCATGAAATTAAGAC+TGG - chr3_1:63043972-63043991 Msa0367370:intron 30.0%
! CCAGATTCATATTTAGGATA+GGG + chr3_1:63044099-63044118 None:intergenic 30.0%
! TCCAGATTCATATTTAGGAT+AGG + chr3_1:63044100-63044119 None:intergenic 30.0%
ATCCTAAATATGAATCTGGA+TGG - chr3_1:63044100-63044119 Msa0367370:intron 30.0%
TAAATATGAATCTGGATGGT+GGG - chr3_1:63044104-63044123 Msa0367370:intron 30.0%
GAATGGGAAAAAAATGTCTT+AGG + chr3_1:63044166-63044185 None:intergenic 30.0%
AAAGTTGAATTGTTGTCCTT+AGG - chr3_1:63044313-63044332 Msa0367370:CDS 30.0%
TGTGATAAGATAACGCACAA+AGG + chr3_1:63041908-63041927 None:intergenic 35.0%
AACAAGATTTAGCAAGATGC+TGG - chr3_1:63041933-63041952 Msa0367370:three_prime_UTR 35.0%
ACAAGATTTAGCAAGATGCT+GGG - chr3_1:63041934-63041953 Msa0367370:three_prime_UTR 35.0%
! TTTGAGTTCACCAACTACAA+TGG - chr3_1:63041972-63041991 Msa0367370:three_prime_UTR 35.0%
!! TCTTTTAGAAGAGGTAAGAG+TGG + chr3_1:63042007-63042026 None:intergenic 35.0%
TCACTCTTTACCAATGAGTT+TGG - chr3_1:63042047-63042066 Msa0367370:three_prime_UTR 35.0%
GTAAAGAGAAAAGGAAACCT+TGG + chr3_1:63042172-63042191 None:intergenic 35.0%
! GTGGGATTAGTAAAGAGAAA+AGG + chr3_1:63042181-63042200 None:intergenic 35.0%
!! TGCAATTTTGAAGGCAACTT+TGG + chr3_1:63042330-63042349 None:intergenic 35.0%
! GTTCTTCTAAAGACCACTTT+AGG + chr3_1:63042409-63042428 None:intergenic 35.0%
GGGATCTGACATTAACTAAT+GGG + chr3_1:63042509-63042528 None:intergenic 35.0%
AGGGATCTGACATTAACTAA+TGG + chr3_1:63042510-63042529 None:intergenic 35.0%
GAACTGAAATGGTGATTCAT+TGG - chr3_1:63042641-63042660 Msa0367370:intron 35.0%
TCACGTAGTACTTATTGAGT+TGG - chr3_1:63042716-63042735 Msa0367370:intron 35.0%
TGCAAAATTTATGCTCGATG+AGG - chr3_1:63042820-63042839 Msa0367370:intron 35.0%
AAAATTTATGCTCGATGAGG+AGG - chr3_1:63042823-63042842 Msa0367370:intron 35.0%
GACGTTCAAATAGTTGTTCT+TGG + chr3_1:63042856-63042875 None:intergenic 35.0%
TGTCATTGAGCCTAAATTCT+TGG - chr3_1:63042919-63042938 Msa0367370:intron 35.0%
AATCAGCATATCTCAATCGT+TGG - chr3_1:63043124-63043143 Msa0367370:intron 35.0%
AGGAACCCAAATCCAATATA+TGG + chr3_1:63043271-63043290 None:intergenic 35.0%
!! TATTAGTGGACTCTAAAAGG+AGG + chr3_1:63043291-63043310 None:intergenic 35.0%
TATATGCTTGCATCAAGAGT+TGG - chr3_1:63043491-63043510 Msa0367370:CDS 35.0%
! ATCAAGAGTTGGTCATTTGT+GGG - chr3_1:63043502-63043521 Msa0367370:CDS 35.0%
TATTATACCACTTGAAAGGG+TGG + chr3_1:63043823-63043842 None:intergenic 35.0%
AAATTCCAGCTTAGTAGGAT+TGG + chr3_1:63044052-63044071 None:intergenic 35.0%
TTCTCAAATTCCAGCTTAGT+AGG + chr3_1:63044057-63044076 None:intergenic 35.0%
AATTTGAGAAGCCTGCAAAA+TGG - chr3_1:63044067-63044086 Msa0367370:intron 35.0%
ATTTGAGAAGCCTGCAAAAT+GGG - chr3_1:63044068-63044087 Msa0367370:intron 35.0%
CCCTATCCTAAATATGAATC+TGG - chr3_1:63044096-63044115 Msa0367370:intron 35.0%
CACCATCCAGATTCATATTT+AGG + chr3_1:63044105-63044124 None:intergenic 35.0%
CTAAATATGAATCTGGATGG+TGG - chr3_1:63044103-63044122 Msa0367370:intron 35.0%
TACCTAGAACTTAGATCCTA+AGG + chr3_1:63044332-63044351 None:intergenic 35.0%
GACGTCAAAGATGAGATATT+TGG - chr3_1:63044462-63044481 Msa0367370:five_prime_UTR 35.0%
TATAAAGCTTGTGTAAAGGC+TGG - chr3_1:63044489-63044508 Msa0367370:five_prime_UTR 35.0%
AAAGAGAGAGTGGGACAATT+CGG + chr3_1:63041789-63041808 None:intergenic 40.0%
GTTATGACAACAGCAAAGAG+TGG + chr3_1:63041830-63041849 None:intergenic 40.0%
AGATGTGTAGAGAGAGTGAT+AGG + chr3_1:63041865-63041884 None:intergenic 40.0%
GTTTGAGCTACCATTGTAGT+TGG + chr3_1:63041985-63042004 None:intergenic 40.0%
TGGTAAAGAGTGAGTTCTGT+TGG + chr3_1:63042040-63042059 None:intergenic 40.0%
GAAGCAACAGCAGTGATAAA+AGG + chr3_1:63042108-63042127 None:intergenic 40.0%
! TGCTGTTGCTTCTGTTCAAT+CGG - chr3_1:63042116-63042135 Msa0367370:three_prime_UTR 40.0%
AAGAGAAAAGGAAACCTTGG+TGG + chr3_1:63042169-63042188 None:intergenic 40.0%
TGTCAGTTTGATCCCTAAAG+TGG - chr3_1:63042393-63042412 Msa0367370:intron 40.0%
TGGCCGAACTTTAGATTACT+AGG - chr3_1:63042482-63042501 Msa0367370:intron 40.0%
GGCCGAACTTTAGATTACTA+GGG - chr3_1:63042483-63042502 Msa0367370:intron 40.0%
! GGCCCTAGTAATCTAAAGTT+CGG + chr3_1:63042488-63042507 None:intergenic 40.0%
TTAATGTCAGATCCCTGAAG+TGG - chr3_1:63042514-63042533 Msa0367370:intron 40.0%
! TGGAGAGCGTAATAAAGAAC+AGG - chr3_1:63042886-63042905 Msa0367370:intron 40.0%
CTGACTTTACCAAGAAACTG+CGG - chr3_1:63042951-63042970 Msa0367370:intron 40.0%
TCATGTTCTTACGTGATCCA+TGG + chr3_1:63043010-63043029 None:intergenic 40.0%
AGGTTAACTATAGGTGACTG+GGG + chr3_1:63043433-63043452 None:intergenic 40.0%
GAGGTTAACTATAGGTGACT+GGG + chr3_1:63043434-63043453 None:intergenic 40.0%
TGAGGTTAACTATAGGTGAC+TGG + chr3_1:63043435-63043454 None:intergenic 40.0%
GCTATTAGGCTTAGCTTATG+AGG + chr3_1:63043453-63043472 None:intergenic 40.0%
! CATCAAGAGTTGGTCATTTG+TGG - chr3_1:63043501-63043520 Msa0367370:CDS 40.0%
AGTTGGTCATTTGTGGGATT+GGG - chr3_1:63043508-63043527 Msa0367370:intron 40.0%
! TCGGGATCGATTCAATAACT+TGG + chr3_1:63043641-63043660 None:intergenic 40.0%
ATCCATGCAGTCATGCAAAT+CGG + chr3_1:63043660-63043679 None:intergenic 40.0%
TTAGCAACTGACACCTCTAA+GGG + chr3_1:63043731-63043750 None:intergenic 40.0%
TTTAGCAACTGACACCTCTA+AGG + chr3_1:63043732-63043751 None:intergenic 40.0%
!! AGACTGGATCGAGTTTTATC+AGG - chr3_1:63043988-63044007 Msa0367370:intron 40.0%
GTCCTTAGGATCTAAGTTCT+AGG - chr3_1:63044327-63044346 Msa0367370:CDS 40.0%
GACAATTCGGGGAGATATCA+TGG + chr3_1:63041776-63041795 None:intergenic 45.0%
AAGAGAGAGTGGGACAATTC+GGG + chr3_1:63041788-63041807 None:intergenic 45.0%
GCAATTGGCAAAGAGAGAGT+GGG + chr3_1:63041798-63041817 None:intergenic 45.0%
GAGTGGAGAAAGATGGCAAT+TGG + chr3_1:63041813-63041832 None:intergenic 45.0%
CAGCAAAGAGTGGAGAAAGA+TGG + chr3_1:63041820-63041839 None:intergenic 45.0%
ATTTAGCAAGATGCTGGGCA+TGG - chr3_1:63041939-63041958 Msa0367370:three_prime_UTR 45.0%
TTTAGCAAGATGCTGGGCAT+GGG - chr3_1:63041940-63041959 Msa0367370:three_prime_UTR 45.0%
GTAGGAGAGACCAAACTCAT+TGG + chr3_1:63042060-63042079 None:intergenic 45.0%
AAGAACCCTAGTTCGCATTC+TGG - chr3_1:63042423-63042442 Msa0367370:intron 45.0%
GTCAATGTCAGACCACTTCA+GGG + chr3_1:63042529-63042548 None:intergenic 45.0%
AGTCAATGTCAGACCACTTC+AGG + chr3_1:63042530-63042549 None:intergenic 45.0%
TTTGAACGTCGTCGCTACTA+TGG - chr3_1:63042866-63042885 Msa0367370:intron 45.0%
CGCAGTTTCTTGGTAAAGTC+AGG + chr3_1:63042953-63042972 None:intergenic 45.0%
GTTGCTCTAGTGTCAACCAA+CGG - chr3_1:63042983-63043002 Msa0367370:intron 45.0%
TTCTCTTGTTGCTGGTAGCA+AGG + chr3_1:63043346-63043365 None:intergenic 45.0%
! GAGTTGGTCATTTGTGGGAT+TGG - chr3_1:63043507-63043526 Msa0367370:intron 45.0%
ACGAACCATCGGATCTTGAT+CGG - chr3_1:63043550-63043569 Msa0367370:intron 45.0%
TCCATGCAGTCATGCAAATC+GGG + chr3_1:63043659-63043678 None:intergenic 45.0%
TAGCAACTGACACCTCTAAG+GGG + chr3_1:63043730-63043749 None:intergenic 45.0%
AAGGGTGGATCTCTATCTGA+TGG + chr3_1:63043808-63043827 None:intergenic 45.0%
TAGAGATCCACCCTTTCAAG+TGG - chr3_1:63043813-63043832 Msa0367370:intron 45.0%
AATCTGCCAAAACACGCACA+GGG + chr3_1:63043958-63043977 None:intergenic 45.0%
TTCCAGCTTAGTAGGATTGG+AGG + chr3_1:63044049-63044068 None:intergenic 45.0%
TTCACCTCTTTCTGTCCAGA+GGG + chr3_1:63044141-63044160 None:intergenic 45.0%
TCCCATTCTGTTTCGGTAAC+CGG - chr3_1:63044178-63044197 Msa0367370:CDS 45.0%
TCCGGTTACCGAAACAGAAT+GGG + chr3_1:63044182-63044201 None:intergenic 45.0%
TTCCGGTTACCGAAACAGAA+TGG + chr3_1:63044183-63044202 None:intergenic 45.0%
ACGATATCTAACACGCAGTC+GGG + chr3_1:63044426-63044445 None:intergenic 45.0%
CACGATATCTAACACGCAGT+CGG + chr3_1:63044427-63044446 None:intergenic 45.0%
AAGCTTGTGTAAAGGCTGGA+TGG - chr3_1:63044493-63044512 Msa0367370:five_prime_UTR 45.0%
!!! ATTAAACTTTTTAAAAATAT+TGG - chr3_1:63043367-63043386 Msa0367370:CDS 5.0%
AGAGAGAGTGGGACAATTCG+GGG + chr3_1:63041787-63041806 None:intergenic 50.0%
GGCAATTGGCAAAGAGAGAG+TGG + chr3_1:63041799-63041818 None:intergenic 50.0%
TTAGCAAGATGCTGGGCATG+GGG - chr3_1:63041941-63041960 Msa0367370:three_prime_UTR 50.0%
! GAAAAGGAAACCTTGGTGGC+AGG + chr3_1:63042165-63042184 None:intergenic 50.0%
TCAGGCCAGAATGCGAACTA+GGG + chr3_1:63042431-63042450 None:intergenic 50.0%
TTCAGGCCAGAATGCGAACT+AGG + chr3_1:63042432-63042451 None:intergenic 50.0%
GTTGACACTAGAGCAACAGC+AGG + chr3_1:63042980-63042999 None:intergenic 50.0%
TAGTGTCAACCAACGGTCCA+TGG - chr3_1:63042990-63043009 Msa0367370:intron 50.0%
TTACGTGATCCATGGACCGT+TGG + chr3_1:63043002-63043021 None:intergenic 50.0%
ACCATCGGATCTTGATCGGA+TGG - chr3_1:63043554-63043573 Msa0367370:intron 50.0%
! TCCCGATTTGCATGACTGCA+TGG - chr3_1:63043655-63043674 Msa0367370:intron 50.0%
ACTCTAGATTGCCTGCAGTC+AGG + chr3_1:63043684-63043703 None:intergenic 50.0%
ATCTGCCAAAACACGCACAG+GGG + chr3_1:63043957-63043976 None:intergenic 50.0%
GAATCTGCCAAAACACGCAC+AGG + chr3_1:63043959-63043978 None:intergenic 50.0%
AGCCTCCAATCCTACTAAGC+TGG - chr3_1:63044044-63044063 Msa0367370:intron 50.0%
TGAGAAGCCTGCAAAATGGG+TGG - chr3_1:63044071-63044090 Msa0367370:intron 50.0%
TGGGAAACTTTCTTGCCCTC+TGG - chr3_1:63044123-63044142 Msa0367370:intron 50.0%
GTTCACCTCTTTCTGTCCAG+AGG + chr3_1:63044142-63044161 None:intergenic 50.0%
CGATATCTAACACGCAGTCG+GGG + chr3_1:63044425-63044444 None:intergenic 50.0%
TTCTGATGCTCCTGCCACCA+AGG - chr3_1:63042152-63042171 Msa0367370:CDS 55.0%
AGCAGGTCTCCGCAGTTTCT+TGG + chr3_1:63042963-63042982 None:intergenic 55.0%
GCCATCCGATCAAGATCCGA+TGG + chr3_1:63043558-63043577 None:intergenic 55.0%
CTGCATGGATTCCTGACTGC+AGG - chr3_1:63043670-63043689 Msa0367370:intron 55.0%
!! TAGGGTGCCACCCATTTTGC+AGG + chr3_1:63044081-63044100 None:intergenic 55.0%
CTTGCCCTCTGGACAGAAAG+AGG - chr3_1:63044134-63044153 Msa0367370:intron 55.0%
! CTCTGCCCCTGTGCGTGTTT+TGG - chr3_1:63043949-63043968 Msa0367370:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 63041736 63044574 63041736 ID=Msa0367370;Name=Msa0367370
chr3_1 mRNA 63041736 63044574 63041736 ID=Msa0367370-mRNA-1;Parent=Msa0367370;Name=Msa0367370-mRNA-1;_AED=0.01;_eAED=0.01;_QI=213|1|1|1|1|1|3|407|216
chr3_1 exon 63041736 63042335 63041736 ID=Msa0367370-mRNA-1:exon:12362;Parent=Msa0367370-mRNA-1
chr3_1 exon 63043293 63043525 63043293 ID=Msa0367370-mRNA-1:exon:12361;Parent=Msa0367370-mRNA-1
chr3_1 exon 63044137 63044574 63044137 ID=Msa0367370-mRNA-1:exon:12360;Parent=Msa0367370-mRNA-1
chr3_1 five_prime_UTR 63044362 63044574 63044362 ID=Msa0367370-mRNA-1:five_prime_utr;Parent=Msa0367370-mRNA-1
chr3_1 CDS 63044137 63044361 63044137 ID=Msa0367370-mRNA-1:cds;Parent=Msa0367370-mRNA-1
chr3_1 CDS 63043293 63043525 63043293 ID=Msa0367370-mRNA-1:cds;Parent=Msa0367370-mRNA-1
chr3_1 CDS 63042143 63042335 63042143 ID=Msa0367370-mRNA-1:cds;Parent=Msa0367370-mRNA-1
chr3_1 three_prime_UTR 63041736 63042142 63041736 ID=Msa0367370-mRNA-1:three_prime_utr;Parent=Msa0367370-mRNA-1
Gene Sequence

>Msa0367370

ATGCTGGGCATGGGGACTCTAACTTTGAGTTCACCAACTACAATGGTAGCTCAAACCACTCTTACCTCTTCTAAAAGACACATAGTTTCCAACAGAACTCACTCTTTACCAATGAGTTTGGTCTCTCCTACAAACCAAAATTTCAAGAAACATAAACCTTTTATCACTGCTGTTGCTTCTGTTCAATCGGACAACGTCAGTTCTTCTGATGCTCCTGCCACCAAGAGTGAGTTCACCAAGTATTATTTTATTGTTGCAAATGCAAAATTTATGCTCGATGAGGAGGAGCATTTCCAAGAACAACTATTTGAACGTCGTCGCTACTATGGAGAGCGTAATAAAGAACAGGATTACTGGCTTGTCATTGAGCCTAAATTCTTGGATAGTTTTCCTGACTTTACCAAGAAACTGCGGAGACCTGCTGTTGCTCTAGTGTCAACCAACGGTCCATGGATCACATTCATGAAATTAAGACTGGATCGAGTTTTATCAGGAAGTTTTGAAGCTGACAGCTTAGAAGAAGCATTAGCCTCCAATCCTACTAAGCTGGAATTTGAGAAGCCTGCAAAATGGGTGGCACCCTATCCTAAATATGAATCTGGATGGTGGGAAACTTTCTTGCCCTCTGGACAGAAAGAGGTGAACTCCTAA

Protein sequence

>Msa0367370

MLGMGTLTLSSPTTMVAQTTLTSSKRHIVSNRTHSLPMSLVSPTNQNFKKHKPFITAVASVQSDNVSSSDAPATKSEFTKYYFIVANAKFMLDEEEHFQEQLFERRRYYGERNKEQDYWLVIEPKFLDSFPDFTKKLRRPAVALVSTNGPWITFMKLRLDRVLSGSFEADSLEEALASNPTKLEFEKPAKWVAPYPKYESGWWETFLPSGQKEVNS*