AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0073820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0073820 MtrunA17_Chr1g0189881 95.795 547 17 1 1 547 344 884 0.0 1069
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0073820 AT3G04260.1 67.325 557 144 7 3 541 364 900 0.0 712

Find 169 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGACATATTTGAGGCGTTTA+AGG 0.213661 1_2:+47801435 Msa0073820:CDS
GTTGAAGAAGGTGGCCTTAC+TGG 0.228055 1_2:+47800204 Msa0073820:CDS
CATAGTCTTGGCTATAAGTT+TGG 0.235188 1_2:+47802755 Msa0073820:CDS
AATCTCGTGGTCGGCCGCTT+TGG 0.249279 1_2:+47800613 Msa0073820:CDS
ATCTCTCTCTGCCTTGATCT+TGG 0.250220 1_2:+47802949 Msa0073820:CDS
ATCTCGTGGTCGGCCGCTTT+GGG 0.251517 1_2:+47800614 Msa0073820:CDS
TGACATGCTTGAAGCTTTAG+AGG 0.252961 1_2:+47799432 Msa0073820:CDS
TATGAAGGAATTGTAGCTTT+AGG 0.264884 1_2:+47800381 Msa0073820:CDS
TTCTTAGGAGAAGGCTTAAA+TGG 0.269093 1_2:+47800841 Msa0073820:CDS
TCTCTCTCTGCCTTGATCTT+GGG 0.272245 1_2:+47802950 Msa0073820:CDS
TATTGGAAACGTCGCTTCTT+AGG 0.272559 1_2:+47800826 Msa0073820:CDS
GGCTTTAATGCATTCTGTTC+AGG 0.274497 1_2:-47800468 None:intergenic
ATCCTCTTTCTTTGTACCTT+CGG 0.284296 1_2:+47798938 Msa0073820:CDS
CAGGGTGATTTCTGCTAAAC+AGG 0.287108 1_2:+47803047 Msa0073820:CDS
ATGAAGGAATTGTAGCTTTA+GGG 0.297375 1_2:+47800382 Msa0073820:CDS
CCTTTATCCTCTCTACATCT+TGG 0.319914 1_2:-47801029 None:intergenic
AAGAAGATCAAGACGGAATA+TGG 0.330554 1_2:+47801149 Msa0073820:CDS
ACTTCTTCAGAAGCTTCTTA+TGG 0.332257 1_2:-47800353 None:intergenic
CAAGATTATATTGATGTTGT+AGG 0.332546 1_2:+47800913 Msa0073820:CDS
TCCTCTTTCTTTGTACCTTC+GGG 0.347813 1_2:+47798939 Msa0073820:CDS
GAAGGCTTAAATGGTGATAA+TGG 0.348591 1_2:+47800850 Msa0073820:CDS
ACGCTGGTAAAGAACATTTC+TGG 0.365600 1_2:-47800565 None:intergenic
CTCAAGGCATCTTTGTTTGA+AGG 0.368508 1_2:-47800316 None:intergenic
TGAGGAGGAGGAAGTAGAAC+AGG 0.374648 1_2:+47800978 Msa0073820:CDS
CCAAGATGTAGAGAGGATAA+AGG 0.374896 1_2:+47801029 Msa0073820:CDS
CTCAATCACTCTAACATAAT+CGG 0.375012 1_2:-47800421 None:intergenic
ACAGGAATGGGAAGTAGATT+TGG 0.377821 1_2:+47801567 Msa0073820:CDS
TCAATATAATCTTGAACATC+AGG 0.378485 1_2:-47800904 None:intergenic
CGATGATGATTGGTTTCCTT+TGG 0.382643 1_2:+47801414 Msa0073820:CDS
TATTACTCAGGTCATACAAT+TGG 0.387619 1_2:+47802637 Msa0073820:intron
GTATACCTTAGCAGATGCTT+GGG 0.406507 1_2:+47801495 Msa0073820:CDS
GTGGCTAAAGAAAATCATAA+AGG 0.407640 1_2:+47800443 Msa0073820:CDS
AAGATTATATTGATGTTGTA+GGG 0.408658 1_2:+47800914 Msa0073820:CDS
TCAAATGATGGCATGGATGC+TGG 0.411727 1_2:+47803084 Msa0073820:CDS
CTCTCTCTGCCTTGATCTTG+GGG 0.413360 1_2:+47802951 Msa0073820:CDS
TGGCTAAAGAAAATCATAAA+GGG 0.417296 1_2:+47800444 Msa0073820:CDS
CTCAGTTTCAGATCAGACTT+TGG 0.418813 1_2:+47803023 Msa0073820:CDS
CACTTCTTCTTCCTCTTCAA+CGG 0.429858 1_2:-47800643 None:intergenic
GTACCTTCGGGCATTGTGTC+GGG 0.434022 1_2:+47798951 Msa0073820:CDS
ATAGTCTTGGCTATAAGTTT+GGG 0.438580 1_2:+47802756 Msa0073820:CDS
TGATGAAGCAGATGAGGATG+AGG 0.443071 1_2:+47800960 Msa0073820:CDS
TCATAGGTGGTCACAGGAAT+GGG 0.445146 1_2:+47801555 Msa0073820:CDS
TTGCAAGAGGAGGCTGAACT+TGG 0.445377 1_2:+47799544 Msa0073820:CDS
GTTTCCTTTGGACATATTTG+AGG 0.447679 1_2:+47801426 Msa0073820:CDS
ACTTCTTCTTCCTCTTCAAC+GGG 0.449381 1_2:-47800642 None:intergenic
GTTTGAAGGAAGTCTCCATT+GGG 0.451557 1_2:-47800302 None:intergenic
TCTACATCTTGGTTCTCTAC+TGG 0.452436 1_2:-47801018 None:intergenic
ACATTTCTGGTTCCATCGAT+TGG 0.452894 1_2:-47800552 None:intergenic
GCATCCATGCCATCATTTGA+AGG 0.454328 1_2:-47803081 None:intergenic
AGCAGATGAGGATGAGGAGG+AGG 0.454688 1_2:+47800966 Msa0073820:CDS
TGTTTGAAGGAAGTCTCCAT+TGG 0.456929 1_2:-47800303 None:intergenic
CGTCAGAATCTTTCAACAGC+TGG 0.459389 1_2:-47801095 None:intergenic
TATATAAATCCATCAGCATC+AGG 0.468220 1_2:-47800273 None:intergenic
AATGCTTGTGAATGAATTGA+AGG 0.472351 1_2:+47800506 Msa0073820:CDS
TGTAGAGAGGATAAAGGAAA+AGG 0.474054 1_2:+47801035 Msa0073820:CDS
TGAAGAACAAACCTCCTCAT+AGG 0.478258 1_2:+47801539 Msa0073820:CDS
GCTTGAAGCTTTAGAGGCTA+TGG 0.478270 1_2:+47799438 Msa0073820:CDS
GCCTTACTGGAGAGCGCAAA+CGG 0.481001 1_2:+47800217 Msa0073820:CDS
ACGAAAATTCTACATATGGA+TGG 0.481360 1_2:+47798904 None:intergenic
AGGATGATGCCGATGATGAT+TGG 0.484108 1_2:+47801404 Msa0073820:intron
TGTACCTTCGGGCATTGTGT+CGG 0.486756 1_2:+47798950 Msa0073820:CDS
TTGAGGCGTTTAAGGAAATG+AGG 0.491957 1_2:+47801443 Msa0073820:CDS
CTCATAGGTGGTCACAGGAA+TGG 0.492800 1_2:+47801554 Msa0073820:CDS
CTGAAGAAGTTGCAGTATGA+AGG 0.497200 1_2:+47800366 Msa0073820:CDS
GGAAGTAGAACAGGTAGAAG+AGG 0.498046 1_2:+47800987 Msa0073820:CDS
TGTATACCTTAGCAGATGCT+TGG 0.498537 1_2:+47801494 Msa0073820:CDS
ACCGTTTGCGCTCTCCAGTA+AGG 0.500952 1_2:-47800218 None:intergenic
ATGAGATTGATTATATTGCT+AGG 0.506892 1_2:+47799569 Msa0073820:CDS
GGCAATAAAAGTTATGCAGA+AGG 0.507370 1_2:+47801588 Msa0073820:CDS
GCTGGACTCCAATCATTTGA+AGG 0.509707 1_2:-47801077 None:intergenic
ATTACTCAGGTCATACAATT+GGG 0.512330 1_2:+47802638 Msa0073820:intron
ACCGGACATTAGTGAGCTCA+TGG 0.514155 1_2:+47799512 Msa0073820:CDS
ATTGACAATCCTTCAAATGA+TGG 0.516346 1_2:+47803072 Msa0073820:CDS
TTTCAGATCAGACTTTGGAC+AGG 0.516371 1_2:+47803028 Msa0073820:CDS
CATCTAGTTCCCCAAGATCA+AGG 0.517160 1_2:-47802960 None:intergenic
AGGAAGGAAATACAGAGTAT+TGG 0.519082 1_2:+47800809 Msa0073820:CDS
CAGATGCTTGGGGATGGACA+TGG 0.521819 1_2:+47801506 Msa0073820:CDS
TACTGGAGAGCGCAAACGGT+GGG 0.522806 1_2:+47800221 Msa0073820:CDS
CGAAAATTCTACATATGGAT+GGG 0.522815 1_2:+47798905 None:intergenic
TGAAGCAGATGAGGATGAGG+AGG 0.524641 1_2:+47800963 Msa0073820:CDS
CCTCTAGATCCTGATGCTGA+TGG 0.527945 1_2:+47800264 Msa0073820:CDS
GGAATTGTAGCTTTAGGGGA+TGG 0.529201 1_2:+47800387 Msa0073820:CDS
CTGCAGACAACTCATAGTCT+TGG 0.531365 1_2:+47802743 Msa0073820:CDS
CTGGACTCCAATCATTTGAA+GGG 0.535035 1_2:-47801076 None:intergenic
AAACGTCGCTTCTTAGGAGA+AGG 0.535168 1_2:+47800832 Msa0073820:CDS
TGAAACAGATATGTTGAAGA+AGG 0.538831 1_2:+47800192 Msa0073820:intron
ATTGATCTCACGCATAAAGC+TGG 0.539841 1_2:+47800786 Msa0073820:CDS
TGTTGCCGTTGTGGCAGACT+TGG 0.541052 1_2:+47802987 Msa0073820:CDS
GTCAAGAAAGCTGAAGGTAG+AGG 0.542367 1_2:-47802716 None:intergenic
CATTCCTGTGACCACCTATG+AGG 0.543065 1_2:-47801553 None:intergenic
GTGGCAGACTTGGAGACCAC+GGG 0.546147 1_2:+47802997 Msa0073820:CDS
ATCAAGACGGAATATGGTTG+AGG 0.548653 1_2:+47801155 Msa0073820:CDS
AAGATGCCTTGAGGAGAAGA+AGG 0.554498 1_2:+47800326 Msa0073820:CDS
TCCATGAGCTCACTAATGTC+CGG 0.555426 1_2:-47799513 None:intergenic
TCAAGATCATTGCCCGTGGA+GGG 0.567551 1_2:-47799480 None:intergenic
AATGGAAATGCAATGGATGA+AGG 0.568839 1_2:+47800868 Msa0073820:CDS
CCTTAGCAGATGCTTGGGGA+TGG 0.569249 1_2:+47801500 Msa0073820:CDS
GCCCGAAGGTACAAAGAAAG+AGG 0.570089 1_2:-47798940 None:intergenic
TATAGCTGCGCGCAAGATCA+CGG 0.570372 1_2:-47802687 None:intergenic
CAATATAATCTTGAACATCA+GGG 0.571529 1_2:-47800903 None:intergenic
CAATCCTTCAAATGATGGCA+TGG 0.571720 1_2:+47803077 Msa0073820:CDS
ACCTCCTCATAGGTGGTCAC+AGG 0.573478 1_2:+47801549 Msa0073820:CDS
ACGGCACAATCTCCGATAGT+TGG 0.574114 1_2:-47802668 None:intergenic
TTGGGTTCCTCCCGTTGAAG+AGG 0.576094 1_2:+47800632 Msa0073820:CDS
GTTGCAGGTGGATGAAGAGC+TGG 0.578409 1_2:+47800759 Msa0073820:intron
ATTTATATATTCAAACCCAA+TGG 0.578723 1_2:+47800287 Msa0073820:CDS
AGATTATATTGATGTTGTAG+GGG 0.580630 1_2:+47800915 Msa0073820:CDS
AGTTCAGCCTCCTCTTGCAA+AGG 0.581011 1_2:-47799541 None:intergenic
GTCTTGGCTATAAGTTTGGG+AGG 0.581497 1_2:+47802759 Msa0073820:CDS
ACAGAATGCATTAAAGCCTA+AGG 0.584058 1_2:+47800473 Msa0073820:CDS
CTCAAGATCATTGCCCGTGG+AGG 0.584251 1_2:-47799481 None:intergenic
TGATCTTGAGCAGAAAATAC+CGG 0.584433 1_2:+47799494 Msa0073820:CDS
TGGTGATAATGGAAATGCAA+TGG 0.588240 1_2:+47800861 Msa0073820:CDS
AACGCCTCAAATATGTCCAA+AGG 0.589906 1_2:-47801430 None:intergenic
CAAAGGAAACCAATCATCAT+CGG 0.590127 1_2:-47801413 None:intergenic
GGTACACCTTCTTCTCCTCA+AGG 0.591446 1_2:-47800332 None:intergenic
ATGGATTGAACCTTTGCAAG+AGG 0.591732 1_2:+47799531 Msa0073820:CDS
TCCTGTGACCACCTATGAGG+AGG 0.592541 1_2:-47801550 None:intergenic
CCATCAGCATCAGGATCTAG+AGG 0.596125 1_2:-47800264 None:intergenic
TGAAGGAATTGTAGCTTTAG+GGG 0.598298 1_2:+47800383 Msa0073820:CDS
GCACAAGGTTTACCAATCGA+TGG 0.599603 1_2:+47800540 Msa0073820:CDS
AGAATTGTCAAGAAAGCTGA+AGG 0.601296 1_2:-47802722 None:intergenic
TTGGGAGGGACACCAACTAT+CGG 0.601421 1_2:+47802656 Msa0073820:CDS
CCATCCCCAAGCATCTGCTA+AGG 0.602394 1_2:-47801500 None:intergenic
TGGACTCCAATCATTTGAAG+GGG 0.603662 1_2:-47801075 None:intergenic
CTGCTCAAGATCATTGCCCG+TGG 0.604098 1_2:-47799484 None:intergenic
CGTTGAAGAGGAAGAAGAAG+TGG 0.604494 1_2:+47800644 Msa0073820:CDS
TTCAGATCAGACTTTGGACA+GGG 0.605217 1_2:+47803029 Msa0073820:CDS
TAACCAGAAAATCCCTCCAC+GGG 0.606115 1_2:+47799468 Msa0073820:CDS
AAACGGTGGGTGCCCCGAAG+TGG 0.606401 1_2:+47800234 Msa0073820:CDS
AGATGCAGCTGTTGCCGTTG+TGG 0.606633 1_2:+47802978 Msa0073820:CDS
TCACGCATAAAGCTGGAGGA+AGG 0.607414 1_2:+47800793 Msa0073820:CDS
GAATAAATCAATCTCGTGGT+CGG 0.611091 1_2:+47800604 Msa0073820:CDS
TAGAGAACCAAGATGTAGAG+AGG 0.611802 1_2:+47801022 Msa0073820:CDS
CTTCGGGCATTGTGTCGGGA+AGG 0.612050 1_2:+47798955 Msa0073820:CDS
AGATGCTTGGGGATGGACAT+GGG 0.614332 1_2:+47801507 Msa0073820:CDS
GATTGAACCTTTGCAAGAGG+AGG 0.617007 1_2:+47799534 Msa0073820:CDS
AACAGATATGTTGAAGAAGG+TGG 0.621152 1_2:+47800195 Msa0073820:intron
TGTAGGGGATGATGCAAAAG+AGG 0.623728 1_2:+47800930 Msa0073820:CDS
TGTGGCAGACTTGGAGACCA+CGG 0.624571 1_2:+47802996 Msa0073820:CDS
CTCAGGTCATACAATTGGGA+GGG 0.626997 1_2:+47802642 Msa0073820:intron
ACTCAGGTCATACAATTGGG+AGG 0.634186 1_2:+47802641 Msa0073820:intron
ATTATGTTAGAGTGATTGAG+TGG 0.634643 1_2:+47800424 Msa0073820:CDS
TTGCAGACCGCTTTATGACG+AGG 0.635470 1_2:+47802924 Msa0073820:intron
TCTTCTTCCTCTTCAACGGG+AGG 0.635806 1_2:-47800639 None:intergenic
GGTCTCCAAGTCTGCCACAA+CGG 0.639161 1_2:-47802992 None:intergenic
TGAAGATGATGAAGCAGATG+AGG 0.643572 1_2:+47800954 Msa0073820:CDS
AATATAATCTTGAACATCAG+GGG 0.644115 1_2:-47800902 None:intergenic
CAAGAAGAAGAAGATCAAGA+CGG 0.644210 1_2:+47801142 Msa0073820:CDS
TTACTGGAGAGCGCAAACGG+TGG 0.645299 1_2:+47800220 Msa0073820:CDS
GGCTAAAGAAAATCATAAAG+GGG 0.647563 1_2:+47800445 Msa0073820:CDS
AGAAGAATAAATCAATCTCG+TGG 0.648152 1_2:+47800600 Msa0073820:CDS
GAGATGACCTCGTCATAAAG+CGG 0.653121 1_2:-47802931 None:intergenic
ATAACCAGAAAATCCCTCCA+CGG 0.655773 1_2:+47799467 Msa0073820:CDS
AGGGTGATTTCTGCTAAACA+GGG 0.660207 1_2:+47803048 Msa0073820:CDS
CTACATATGGATGGGAACCA+CGG 0.664930 1_2:+47798913 None:intergenic
CTTCAAACAAAGATGCCTTG+AGG 0.665499 1_2:+47800317 Msa0073820:CDS
TCAACGGGAGGAACCCAAAG+CGG 0.666771 1_2:-47800627 None:intergenic
AGAACAAACCTCCTCATAGG+TGG 0.666839 1_2:+47801542 Msa0073820:CDS
GATCTCACGCATAAAGCTGG+AGG 0.669561 1_2:+47800789 Msa0073820:CDS
AAGGAAGAACTAGAAGCACA+AGG 0.676402 1_2:+47800525 Msa0073820:CDS
GAATGCATTAAAGCCTAAGG+CGG 0.680846 1_2:+47800476 Msa0073820:CDS
CTTCCCGACACAATGCCCGA+AGG 0.685812 1_2:-47798954 None:intergenic
TATACCTTAGCAGATGCTTG+GGG 0.690390 1_2:+47801496 Msa0073820:CDS
GGGTGATTTCTGCTAAACAG+GGG 0.701939 1_2:+47803049 Msa0073820:CDS
ATCTGAAACTGAGATCCCCG+TGG 0.712322 1_2:-47803013 None:intergenic
TTCTTGCTTTCTGAACACGC+TGG 0.712889 1_2:-47800581 None:intergenic
TGGCAGACTTGGAGACCACG+GGG 0.745351 1_2:+47802998 Msa0073820:CDS
ACAAAGAAAGAGGATCTCCG+TGG 0.767708 1_2:-47798930 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GGTTATTTTATTATTTATTA+TGG + chr1_2:47799632-47799651 Msa0073820:intron 10.0%
!! ATTATAATAATTTCAATTTG+GGG - chr1_2:47799727-47799746 None:intergenic 10.0%
!! CATTATAATAATTTCAATTT+GGG - chr1_2:47799728-47799747 None:intergenic 10.0%
!! TCATTATAATAATTTCAATT+TGG - chr1_2:47799729-47799748 None:intergenic 10.0%
!! ATCAATATAATAATATGTAT+TGG - chr1_2:47800132-47800151 None:intergenic 10.0%
!! AAAGATATCAAAAAATTTAT+TGG - chr1_2:47802865-47802884 None:intergenic 10.0%
!! TAATATTCTGTAGAAAATTT+AGG + chr1_2:47799056-47799075 Msa0073820:intron 15.0%
!! AATATTCTGTAGAAAATTTA+GGG + chr1_2:47799057-47799076 Msa0073820:intron 15.0%
!! ATTACTATAGATAATAATCA+TGG + chr1_2:47799282-47799301 Msa0073820:intron 15.0%
!!! ATACTTTTATTACTTATTCT+TGG + chr1_2:47799688-47799707 Msa0073820:intron 15.0%
!! TAAAATAACAATTATTAGGT+AGG - chr1_2:47799832-47799851 None:intergenic 15.0%
!! AAGGTAAAATAACAATTATT+AGG - chr1_2:47799836-47799855 None:intergenic 15.0%
!!! ATTTTCAAGCTTTTTTATTT+TGG + chr1_2:47800032-47800051 Msa0073820:intron 15.0%
!! TTATATATTAAAGATCAAGA+TGG - chr1_2:47800715-47800734 None:intergenic 15.0%
!! TGAAATATCATAAAACTAAA+GGG + chr1_2:47801882-47801901 Msa0073820:intron 15.0%
!!! TATTTTCATCTTTTTTTTAC+TGG - chr1_2:47802027-47802046 None:intergenic 15.0%
!! TAATTGAGATATTCATAATT+TGG + chr1_2:47802611-47802630 Msa0073820:intron 15.0%
!! ATATTCTGTAGAAAATTTAG+GGG + chr1_2:47799058-47799077 Msa0073820:intron 20.0%
!!! GAATTTTATAGTATAACACT+GGG - chr1_2:47799923-47799942 None:intergenic 20.0%
!!! AGAATTTTATAGTATAACAC+TGG - chr1_2:47799924-47799943 None:intergenic 20.0%
!!! TTTCTAGCTAAAAAAATTTC+AGG - chr1_2:47800012-47800031 None:intergenic 20.0%
!! GTCTAGTATATATTAGTTAA+GGG + chr1_2:47800096-47800115 Msa0073820:intron 20.0%
!! TCTAGTATATATTAGTTAAG+GGG + chr1_2:47800097-47800116 Msa0073820:intron 20.0%
!! ATTTATATATTCAAACCCAA+TGG + chr1_2:47800287-47800306 Msa0073820:CDS 20.0%
!! ATAATGCCTAAACTTAAATA+TGG + chr1_2:47800731-47800750 Msa0073820:intron 20.0%
!! AAGATTATATTGATGTTGTA+GGG + chr1_2:47800914-47800933 Msa0073820:CDS 20.0%
!! AAAAAAAAAAAAACTAGTCC+AGG - chr1_2:47801626-47801645 None:intergenic 20.0%
!!! CAGTTTTTATTTTATTCACA+TGG - chr1_2:47801743-47801762 None:intergenic 20.0%
!!! AAACTGTTTAAACTTTTTTG+TGG + chr1_2:47801757-47801776 Msa0073820:intron 20.0%
!! CTGAAATATCATAAAACTAA+AGG + chr1_2:47801881-47801900 Msa0073820:intron 20.0%
!! ATAAGAAATACCAAATGTAA+TGG - chr1_2:47801991-47802010 None:intergenic 20.0%
!! TGCTATAATTAAGAAATAGT+CGG + chr1_2:47802235-47802254 Msa0073820:intron 20.0%
!! GAATTTATAAATACTCTAAG+TGG + chr1_2:47802448-47802467 Msa0073820:intron 20.0%
!!! TATCAAAAAATTTATTGGCT+GGG - chr1_2:47802860-47802879 None:intergenic 20.0%
!! ATATCAAAAAATTTATTGGC+TGG - chr1_2:47802861-47802880 None:intergenic 20.0%
!! AGCTGAAAGAATTATTTTCA+GGG + chr1_2:47799119-47799138 Msa0073820:intron 25.0%
! TGTAAGAAAATAGATTCTCA+AGG - chr1_2:47799228-47799247 None:intergenic 25.0%
! TATAGTAAAAAAATGTGTGC+CGG - chr1_2:47799401-47799420 None:intergenic 25.0%
!!! CACATTTTTTTACTATAGGT+AGG + chr1_2:47799404-47799423 Msa0073820:intron 25.0%
! ATGAGATTGATTATATTGCT+AGG + chr1_2:47799569-47799588 Msa0073820:CDS 25.0%
!!! AGTAGTTGCTATTTTGTATT+TGG + chr1_2:47799611-47799630 Msa0073820:intron 25.0%
!!! ATTGTTATTTTACCTTGTGA+TGG + chr1_2:47799840-47799859 Msa0073820:intron 25.0%
! TAAAATTCTGTACCCAATAT+TGG + chr1_2:47799935-47799954 Msa0073820:intron 25.0%
! TTTGCTAATAGTCCAATATT+GGG - chr1_2:47799950-47799969 None:intergenic 25.0%
!! TTTTGCTAATAGTCCAATAT+TGG - chr1_2:47799951-47799970 None:intergenic 25.0%
! ATATTGGACTATTAGCAAAA+TGG + chr1_2:47799951-47799970 Msa0073820:intron 25.0%
! TATTGGACTATTAGCAAAAT+GGG + chr1_2:47799952-47799971 Msa0073820:intron 25.0%
! GGTCTAGTATATATTAGTTA+AGG + chr1_2:47800095-47800114 Msa0073820:intron 25.0%
! TGGCTAAAGAAAATCATAAA+GGG + chr1_2:47800444-47800463 Msa0073820:CDS 25.0%
! AGATGGCATACAAAAAAAAA+CGG - chr1_2:47800698-47800717 None:intergenic 25.0%
! AATATAATCTTGAACATCAG+GGG - chr1_2:47800905-47800924 None:intergenic 25.0%
! CAATATAATCTTGAACATCA+GGG - chr1_2:47800906-47800925 None:intergenic 25.0%
! TCAATATAATCTTGAACATC+AGG - chr1_2:47800907-47800926 None:intergenic 25.0%
! CAAGATTATATTGATGTTGT+AGG + chr1_2:47800913-47800932 Msa0073820:CDS 25.0%
! AGATTATATTGATGTTGTAG+GGG + chr1_2:47800915-47800934 Msa0073820:CDS 25.0%
!!! AATCAGGATGATTTGTTTTT+TGG + chr1_2:47801240-47801259 Msa0073820:intron 25.0%
!! TTTGAAATGATTAAATGCCT+TGG + chr1_2:47801676-47801695 Msa0073820:intron 25.0%
! ATATCAGAATTTAAGAACCA+AGG - chr1_2:47801696-47801715 None:intergenic 25.0%
!!! TTTATTTTATTCACATGGAG+AGG - chr1_2:47801738-47801757 None:intergenic 25.0%
!!! GAATGAATAAACTCTGAAAT+CGG - chr1_2:47801853-47801872 None:intergenic 25.0%
! TATATTGTGAGAAAGATTCA+TGG + chr1_2:47801918-47801937 Msa0073820:intron 25.0%
! TATCACTACTATCTATGTAT+TGG + chr1_2:47801944-47801963 Msa0073820:intron 25.0%
! TATAGGATATCCATTACATT+TGG + chr1_2:47801978-47801997 Msa0073820:intron 25.0%
! TCCTATTACACATTAATTCA+CGG - chr1_2:47802170-47802189 None:intergenic 25.0%
! CAGCTGAAAGAATTATTTTC+AGG + chr1_2:47799118-47799137 Msa0073820:intron 30.0%
GGTATTACTTAGTAGTTGAA+GGG + chr1_2:47799140-47799159 Msa0073820:intron 30.0%
ATGGTAAATGTAATTGTCTG+TGG + chr1_2:47799301-47799320 Msa0073820:intron 30.0%
TATTTACGACCAATATTGTC+TGG + chr1_2:47799358-47799377 Msa0073820:intron 30.0%
ATTTACGACCAATATTGTCT+GGG + chr1_2:47799359-47799378 Msa0073820:intron 30.0%
!!! GGCACACATTTTTTTACTAT+AGG + chr1_2:47799400-47799419 Msa0073820:intron 30.0%
TTTATTACTTATTCTTGGCC+AGG + chr1_2:47799693-47799712 Msa0073820:intron 30.0%
!!! GTCTTTTTTAGTTTTGATCG+AGG + chr1_2:47799757-47799776 Msa0073820:intron 30.0%
AAACACAATTTACCATCACA+AGG - chr1_2:47799855-47799874 None:intergenic 30.0%
CCTGCATTAAATAGAAAGAA+AGG - chr1_2:47800061-47800080 None:intergenic 30.0%
CCTTTCTTTCTATTTAATGC+AGG + chr1_2:47800058-47800077 Msa0073820:intron 30.0%
TGAAACAGATATGTTGAAGA+AGG + chr1_2:47800192-47800211 Msa0073820:intron 30.0%
TATATAAATCCATCAGCATC+AGG - chr1_2:47800276-47800295 None:intergenic 30.0%
TATGAAGGAATTGTAGCTTT+AGG + chr1_2:47800381-47800400 Msa0073820:CDS 30.0%
! ATGAAGGAATTGTAGCTTTA+GGG + chr1_2:47800382-47800401 Msa0073820:CDS 30.0%
CTCAATCACTCTAACATAAT+CGG - chr1_2:47800424-47800443 None:intergenic 30.0%
ATTATGTTAGAGTGATTGAG+TGG + chr1_2:47800424-47800443 Msa0073820:CDS 30.0%
GTGGCTAAAGAAAATCATAA+AGG + chr1_2:47800443-47800462 Msa0073820:CDS 30.0%
GGCTAAAGAAAATCATAAAG+GGG + chr1_2:47800445-47800464 Msa0073820:CDS 30.0%
AATGCTTGTGAATGAATTGA+AGG + chr1_2:47800506-47800525 Msa0073820:CDS 30.0%
AGAAGAATAAATCAATCTCG+TGG + chr1_2:47800600-47800619 Msa0073820:CDS 30.0%
TACAAAAAAAAACGGCATTC+AGG - chr1_2:47800690-47800709 None:intergenic 30.0%
! CACGAACCATATTTAAGTTT+AGG - chr1_2:47800740-47800759 None:intergenic 30.0%
AAAAAACCCCTTCAAATGAT+TGG + chr1_2:47801069-47801088 Msa0073820:CDS 30.0%
!! TCTTCTTGACTTTTTAGAAG+TGG - chr1_2:47801130-47801149 None:intergenic 30.0%
AAAGAAAAAGAAGACACCAA+GGG - chr1_2:47801190-47801209 None:intergenic 30.0%
TAAAGAAAAAGAAGACACCA+AGG - chr1_2:47801191-47801210 None:intergenic 30.0%
! CTTTTTCTTTACACATGTTC+TGG + chr1_2:47801200-47801219 Msa0073820:intron 30.0%
!!! ATTTGTTTTTTGGACCTTGA+GGG + chr1_2:47801250-47801269 Msa0073820:intron 30.0%
ATTTCAAACCAATTCAACAG+AGG - chr1_2:47801664-47801683 None:intergenic 30.0%
!! ACTATCTATGTATTGGTTAG+TGG + chr1_2:47801951-47801970 Msa0073820:intron 30.0%
! TATTGGTTAGTGGCATATAT+AGG + chr1_2:47801961-47801980 Msa0073820:intron 30.0%
!! TATTGTTTTACTCCAACCTT+TGG + chr1_2:47802086-47802105 Msa0073820:intron 30.0%
CCTATTACACATTAATTCAC+GGG - chr1_2:47802169-47802188 None:intergenic 30.0%
!! TGAAGATATGCTTGTTATAG+TGG + chr1_2:47802200-47802219 Msa0073820:intron 30.0%
ACGTGTAAAGAACTAAAAGT+TGG + chr1_2:47802274-47802293 Msa0073820:intron 30.0%
AAAGAACTAAAAGTTGGCTA+TGG + chr1_2:47802280-47802299 Msa0073820:intron 30.0%
TATGGCGTAATGATTAAGTA+TGG + chr1_2:47802298-47802317 Msa0073820:intron 30.0%
ATTTCCTTCTTGATCAATGA+CGG - chr1_2:47802338-47802357 None:intergenic 30.0%
GATCAAGAAGGAAATCTAAA+AGG + chr1_2:47802343-47802362 Msa0073820:intron 30.0%
ATAATTTGGCTGTATTACTC+AGG + chr1_2:47802625-47802644 Msa0073820:intron 30.0%
TATTACTCAGGTCATACAAT+TGG + chr1_2:47802637-47802656 Msa0073820:intron 30.0%
ATTACTCAGGTCATACAATT+GGG + chr1_2:47802638-47802657 Msa0073820:intron 30.0%
! ATAGTCTTGGCTATAAGTTT+GGG + chr1_2:47802756-47802775 Msa0073820:CDS 30.0%
TATGATAAGACTCTTGTAGT+TGG + chr1_2:47802799-47802818 Msa0073820:intron 30.0%
! AAAAATTTATTGGCTGGGTT+GGG - chr1_2:47802855-47802874 None:intergenic 30.0%
! AAAAAATTTATTGGCTGGGT+TGG - chr1_2:47802856-47802875 None:intergenic 30.0%
ATTGACAATCCTTCAAATGA+TGG + chr1_2:47803072-47803091 Msa0073820:CDS 30.0%
ATCCTCTTTCTTTGTACCTT+CGG + chr1_2:47798938-47798957 Msa0073820:CDS 35.0%
TAGAAAATTTAGGGGATCTG+AGG + chr1_2:47799066-47799085 Msa0073820:intron 35.0%
GGGTATTACTTAGTAGTTGA+AGG + chr1_2:47799139-47799158 Msa0073820:intron 35.0%
CATGATTCATCATGTGTAGA+AGG + chr1_2:47799176-47799195 Msa0073820:intron 35.0%
! CTTACATTTTGTTGCTCTTG+TGG + chr1_2:47799242-47799261 Msa0073820:intron 35.0%
! AAAGCATTCCCAGACAATAT+TGG - chr1_2:47799370-47799389 None:intergenic 35.0%
TGATCTTGAGCAGAAAATAC+CGG + chr1_2:47799494-47799513 Msa0073820:CDS 35.0%
AACATTAGTGACACTACTCT+TGG - chr1_2:47799809-47799828 None:intergenic 35.0%
TCAGACCATTACTTGGAATT+TGG - chr1_2:47799982-47800001 None:intergenic 35.0%
AGTTTCTTCAGACCATTACT+TGG - chr1_2:47799989-47800008 None:intergenic 35.0%
AACAGATATGTTGAAGAAGG+TGG + chr1_2:47800195-47800214 Msa0073820:intron 35.0%
ACTTCTTCAGAAGCTTCTTA+TGG - chr1_2:47800356-47800375 None:intergenic 35.0%
!! TGAAGGAATTGTAGCTTTAG+GGG + chr1_2:47800383-47800402 Msa0073820:CDS 35.0%
ACAGAATGCATTAAAGCCTA+AGG + chr1_2:47800473-47800492 Msa0073820:CDS 35.0%
GAATAAATCAATCTCGTGGT+CGG + chr1_2:47800604-47800623 Msa0073820:CDS 35.0%
TTAAATATGGTTCGTGTTGC+AGG + chr1_2:47800744-47800763 Msa0073820:intron 35.0%
AGGAAGGAAATACAGAGTAT+TGG + chr1_2:47800809-47800828 Msa0073820:CDS 35.0%
TTCTTAGGAGAAGGCTTAAA+TGG + chr1_2:47800841-47800860 Msa0073820:CDS 35.0%
GAAGGCTTAAATGGTGATAA+TGG + chr1_2:47800850-47800869 Msa0073820:CDS 35.0%
!! TGGTGATAATGGAAATGCAA+TGG + chr1_2:47800861-47800880 Msa0073820:CDS 35.0%
AATGGAAATGCAATGGATGA+AGG + chr1_2:47800868-47800887 Msa0073820:CDS 35.0%
TGTAGAGAGGATAAAGGAAA+AGG + chr1_2:47801035-47801054 Msa0073820:CDS 35.0%
CAAGAAGAAGAAGATCAAGA+CGG + chr1_2:47801142-47801161 Msa0073820:CDS 35.0%
AAGAAGATCAAGACGGAATA+TGG + chr1_2:47801149-47801168 Msa0073820:CDS 35.0%
TTCTTTACACATGTTCTGGT+TGG + chr1_2:47801204-47801223 Msa0073820:intron 35.0%
!!! GATTTGTTTTTTGGACCTTG+AGG + chr1_2:47801249-47801268 Msa0073820:intron 35.0%
TATCGTGAAATTCAAGCTCA+AGG - chr1_2:47801307-47801326 None:intergenic 35.0%
! ACCTAAAGTTGTTTCCTTAC+AGG + chr1_2:47801384-47801403 Msa0073820:intron 35.0%
TCCTGTAAGGAAACAACTTT+AGG - chr1_2:47801388-47801407 None:intergenic 35.0%
CAAAGGAAACCAATCATCAT+CGG - chr1_2:47801416-47801435 None:intergenic 35.0%
GTTTCCTTTGGACATATTTG+AGG + chr1_2:47801426-47801445 Msa0073820:CDS 35.0%
GGCAATAAAAGTTATGCAGA+AGG + chr1_2:47801588-47801607 Msa0073820:CDS 35.0%
AAACTTCACTCAAACACTCA+CGG - chr1_2:47801794-47801813 None:intergenic 35.0%
! TAACTTTTTGCTCAGTCCAA+AGG - chr1_2:47802105-47802124 None:intergenic 35.0%
CCCGTGAATTAATGTGTAAT+AGG + chr1_2:47802166-47802185 Msa0073820:intron 35.0%
! TAAGTATGGTGATAATGCAG+CGG + chr1_2:47802312-47802331 Msa0073820:intron 35.0%
AGATTACACTATGCTTGAAC+AGG - chr1_2:47802555-47802574 None:intergenic 35.0%
AGAATTGTCAAGAAAGCTGA+AGG - chr1_2:47802725-47802744 None:intergenic 35.0%
! CATAGTCTTGGCTATAAGTT+TGG + chr1_2:47802755-47802774 Msa0073820:CDS 35.0%
TCCTCTTTCTTTGTACCTTC+GGG + chr1_2:47798939-47798958 Msa0073820:CDS 40.0%
! TCGGGAAGGTATGATTATAC+TGG + chr1_2:47798969-47798988 Msa0073820:intron 40.0%
! ATCTGAGGCATGCATTCTAT+AGG + chr1_2:47799081-47799100 Msa0073820:intron 40.0%
! TCTGAGGCATGCATTCTATA+GGG + chr1_2:47799082-47799101 Msa0073820:intron 40.0%
! TGACATGCTTGAAGCTTTAG+AGG + chr1_2:47799432-47799451 Msa0073820:CDS 40.0%
!!! AGGGATTTTCTGGTTATCGT+TGG - chr1_2:47799464-47799483 None:intergenic 40.0%
ATAACCAGAAAATCCCTCCA+CGG + chr1_2:47799467-47799486 Msa0073820:CDS 40.0%
! ATGGATTGAACCTTTGCAAG+AGG + chr1_2:47799531-47799550 Msa0073820:CDS 40.0%
GCACTTTCACATTAATGTCC+AGG + chr1_2:47799880-47799899 Msa0073820:intron 40.0%
AGTATAACACTGGGTCTAGT+GGG - chr1_2:47799914-47799933 None:intergenic 40.0%
TAGTATAACACTGGGTCTAG+TGG - chr1_2:47799915-47799934 None:intergenic 40.0%
GCAGACCAAATTCCAAGTAA+TGG + chr1_2:47799974-47799993 Msa0073820:intron 40.0%
!!! TAGAGGTGTTTTACCACTTC+GGG - chr1_2:47800250-47800269 None:intergenic 40.0%
!!! CTAGAGGTGTTTTACCACTT+CGG - chr1_2:47800251-47800270 None:intergenic 40.0%
GTTTGAAGGAAGTCTCCATT+GGG - chr1_2:47800305-47800324 None:intergenic 40.0%
TGTTTGAAGGAAGTCTCCAT+TGG - chr1_2:47800306-47800325 None:intergenic 40.0%
! CTCAAGGCATCTTTGTTTGA+AGG - chr1_2:47800319-47800338 None:intergenic 40.0%
CTTCAAACAAAGATGCCTTG+AGG + chr1_2:47800317-47800336 Msa0073820:CDS 40.0%
CTGAAGAAGTTGCAGTATGA+AGG + chr1_2:47800366-47800385 Msa0073820:CDS 40.0%
! GGCTTTAATGCATTCTGTTC+AGG - chr1_2:47800471-47800490 None:intergenic 40.0%
GAATGCATTAAAGCCTAAGG+CGG + chr1_2:47800476-47800495 Msa0073820:CDS 40.0%
! AAGGAAGAACTAGAAGCACA+AGG + chr1_2:47800525-47800544 Msa0073820:CDS 40.0%
!! ACATTTCTGGTTCCATCGAT+TGG - chr1_2:47800555-47800574 None:intergenic 40.0%
ACGCTGGTAAAGAACATTTC+TGG - chr1_2:47800568-47800587 None:intergenic 40.0%
ACTTCTTCTTCCTCTTCAAC+GGG - chr1_2:47800645-47800664 None:intergenic 40.0%
CACTTCTTCTTCCTCTTCAA+CGG - chr1_2:47800646-47800665 None:intergenic 40.0%
ATTGATCTCACGCATAAAGC+TGG + chr1_2:47800786-47800805 Msa0073820:CDS 40.0%
TATTGGAAACGTCGCTTCTT+AGG + chr1_2:47800826-47800845 Msa0073820:CDS 40.0%
TGAAGATGATGAAGCAGATG+AGG + chr1_2:47800954-47800973 Msa0073820:CDS 40.0%
! TCTACATCTTGGTTCTCTAC+TGG - chr1_2:47801021-47801040 None:intergenic 40.0%
TAGAGAACCAAGATGTAGAG+AGG + chr1_2:47801022-47801041 Msa0073820:CDS 40.0%
CCTTTATCCTCTCTACATCT+TGG - chr1_2:47801032-47801051 None:intergenic 40.0%
CCAAGATGTAGAGAGGATAA+AGG + chr1_2:47801029-47801048 Msa0073820:CDS 40.0%
TGGACTCCAATCATTTGAAG+GGG - chr1_2:47801078-47801097 None:intergenic 40.0%
CTGGACTCCAATCATTTGAA+GGG - chr1_2:47801079-47801098 None:intergenic 40.0%
!! GACTTTTTAGAAGTGGCAGA+GGG - chr1_2:47801123-47801142 None:intergenic 40.0%
!! TGACTTTTTAGAAGTGGCAG+AGG - chr1_2:47801124-47801143 None:intergenic 40.0%
ATCAAGACGGAATATGGTTG+AGG + chr1_2:47801155-47801174 Msa0073820:CDS 40.0%
GTTGAGGTATGATAATCCCT+TGG + chr1_2:47801171-47801190 Msa0073820:intron 40.0%
! TTACACATGTTCTGGTTGGT+TGG + chr1_2:47801208-47801227 Msa0073820:intron 40.0%
! TACACATGTTCTGGTTGGTT+GGG + chr1_2:47801209-47801228 Msa0073820:intron 40.0%
! ATGAAAGGCTGAGTCTGTTT+TGG + chr1_2:47801280-47801299 Msa0073820:intron 40.0%
!! CGATGATGATTGGTTTCCTT+TGG + chr1_2:47801414-47801433 Msa0073820:CDS 40.0%
AACGCCTCAAATATGTCCAA+AGG - chr1_2:47801433-47801452 None:intergenic 40.0%
! GGACATATTTGAGGCGTTTA+AGG + chr1_2:47801435-47801454 Msa0073820:CDS 40.0%
! TTGAGGCGTTTAAGGAAATG+AGG + chr1_2:47801443-47801462 Msa0073820:CDS 40.0%
TGTATACCTTAGCAGATGCT+TGG + chr1_2:47801494-47801513 Msa0073820:CDS 40.0%
GTATACCTTAGCAGATGCTT+GGG + chr1_2:47801495-47801514 Msa0073820:CDS 40.0%
TATACCTTAGCAGATGCTTG+GGG + chr1_2:47801496-47801515 Msa0073820:CDS 40.0%
TGAAGAACAAACCTCCTCAT+AGG + chr1_2:47801539-47801558 Msa0073820:CDS 40.0%
ACAGGAATGGGAAGTAGATT+TGG + chr1_2:47801567-47801586 Msa0073820:CDS 40.0%
AGAAGGCAAGTAACTTAACC+TGG + chr1_2:47801605-47801624 Msa0073820:intron 40.0%
CAAGCTTTCCTCTGTTGAAT+TGG + chr1_2:47801653-47801672 Msa0073820:intron 40.0%
! TTTTTGCTCAGTCCAAAGGT+TGG - chr1_2:47802101-47802120 None:intergenic 40.0%
GTGTTATCAGCTACTCTAGA+AGG + chr1_2:47802400-47802419 Msa0073820:intron 40.0%
ATAAAGCGGTCTGCAACATA+GGG - chr1_2:47802920-47802939 None:intergenic 40.0%
CTCAGTTTCAGATCAGACTT+TGG + chr1_2:47803023-47803042 Msa0073820:CDS 40.0%
TTTCAGATCAGACTTTGGAC+AGG + chr1_2:47803028-47803047 Msa0073820:CDS 40.0%
TTCAGATCAGACTTTGGACA+GGG + chr1_2:47803029-47803048 Msa0073820:CDS 40.0%
AGGGTGATTTCTGCTAAACA+GGG + chr1_2:47803048-47803067 Msa0073820:CDS 40.0%
CAATCCTTCAAATGATGGCA+TGG + chr1_2:47803077-47803096 Msa0073820:CDS 40.0%
ACAAAGAAAGAGGATCTCCG+TGG - chr1_2:47798933-47798952 None:intergenic 45.0%
!! GCTTGAAGCTTTAGAGGCTA+TGG + chr1_2:47799438-47799457 Msa0073820:CDS 45.0%
TAACCAGAAAATCCCTCCAC+GGG + chr1_2:47799468-47799487 Msa0073820:CDS 45.0%
TCCATGAGCTCACTAATGTC+CGG - chr1_2:47799516-47799535 None:intergenic 45.0%
GATTGAACCTTTGCAAGAGG+AGG + chr1_2:47799534-47799553 Msa0073820:CDS 45.0%
! CAATTTGGGGTTTAGTGACC+TGG - chr1_2:47799714-47799733 None:intergenic 45.0%
!!! AGAGGTGTTTTACCACTTCG+GGG - chr1_2:47800249-47800268 None:intergenic 45.0%
AAGATGCCTTGAGGAGAAGA+AGG + chr1_2:47800326-47800345 Msa0073820:CDS 45.0%
!! GGAATTGTAGCTTTAGGGGA+TGG + chr1_2:47800387-47800406 Msa0073820:CDS 45.0%
! AGCATTTTACTAGCCGCCTT+AGG - chr1_2:47800492-47800511 None:intergenic 45.0%
GCACAAGGTTTACCAATCGA+TGG + chr1_2:47800540-47800559 Msa0073820:CDS 45.0%
TTCTTGCTTTCTGAACACGC+TGG - chr1_2:47800584-47800603 None:intergenic 45.0%
CGTTGAAGAGGAAGAAGAAG+TGG + chr1_2:47800644-47800663 Msa0073820:CDS 45.0%
AATATGGTTCGTGTTGCAGG+TGG + chr1_2:47800747-47800766 Msa0073820:intron 45.0%
AAACGTCGCTTCTTAGGAGA+AGG + chr1_2:47800832-47800851 Msa0073820:CDS 45.0%
TGTAGGGGATGATGCAAAAG+AGG + chr1_2:47800930-47800949 Msa0073820:CDS 45.0%
TGATGAAGCAGATGAGGATG+AGG + chr1_2:47800960-47800979 Msa0073820:CDS 45.0%
GGAAGTAGAACAGGTAGAAG+AGG + chr1_2:47800987-47801006 Msa0073820:CDS 45.0%
GCTGGACTCCAATCATTTGA+AGG - chr1_2:47801080-47801099 None:intergenic 45.0%
CGTCAGAATCTTTCAACAGC+TGG - chr1_2:47801098-47801117 None:intergenic 45.0%
! ACACATGTTCTGGTTGGTTG+GGG + chr1_2:47801210-47801229 Msa0073820:intron 45.0%
CTTTCATGCATGATCCCTCA+AGG - chr1_2:47801267-47801286 None:intergenic 45.0%
CTTGAGGGATCATGCATGAA+AGG + chr1_2:47801265-47801284 Msa0073820:intron 45.0%
ATCATCGGCATCATCCTGTA+AGG - chr1_2:47801401-47801420 None:intergenic 45.0%
AGGATGATGCCGATGATGAT+TGG + chr1_2:47801404-47801423 Msa0073820:intron 45.0%
AGAACAAACCTCCTCATAGG+TGG + chr1_2:47801542-47801561 Msa0073820:CDS 45.0%
TCATAGGTGGTCACAGGAAT+GGG + chr1_2:47801555-47801574 Msa0073820:CDS 45.0%
ACTCAGGTCATACAATTGGG+AGG + chr1_2:47802641-47802660 Msa0073820:intron 45.0%
CTCAGGTCATACAATTGGGA+GGG + chr1_2:47802642-47802661 Msa0073820:intron 45.0%
GTCAAGAAAGCTGAAGGTAG+AGG - chr1_2:47802719-47802738 None:intergenic 45.0%
CTGCAGACAACTCATAGTCT+TGG + chr1_2:47802743-47802762 Msa0073820:CDS 45.0%
GTCTTGGCTATAAGTTTGGG+AGG + chr1_2:47802759-47802778 Msa0073820:CDS 45.0%
! TTATTGGCTGGGTTGGGTAA+CGG - chr1_2:47802849-47802868 None:intergenic 45.0%
! AAACAAGGGAAAGCATGAGC+TGG - chr1_2:47802896-47802915 None:intergenic 45.0%
CTGCAACATAGGGGAAACAA+GGG - chr1_2:47802910-47802929 None:intergenic 45.0%
TCTGCAACATAGGGGAAACA+AGG - chr1_2:47802911-47802930 None:intergenic 45.0%
TAAAGCGGTCTGCAACATAG+GGG - chr1_2:47802919-47802938 None:intergenic 45.0%
CATAAAGCGGTCTGCAACAT+AGG - chr1_2:47802921-47802940 None:intergenic 45.0%
GAGATGACCTCGTCATAAAG+CGG - chr1_2:47802934-47802953 None:intergenic 45.0%
ATCTCTCTCTGCCTTGATCT+TGG + chr1_2:47802949-47802968 Msa0073820:CDS 45.0%
TCTCTCTCTGCCTTGATCTT+GGG + chr1_2:47802950-47802969 Msa0073820:CDS 45.0%
! CATCTAGTTCCCCAAGATCA+AGG - chr1_2:47802963-47802982 None:intergenic 45.0%
CAGGGTGATTTCTGCTAAAC+AGG + chr1_2:47803047-47803066 Msa0073820:CDS 45.0%
GGGTGATTTCTGCTAAACAG+GGG + chr1_2:47803049-47803068 Msa0073820:CDS 45.0%
GCATCCATGCCATCATTTGA+AGG - chr1_2:47803084-47803103 None:intergenic 45.0%
TCAAATGATGGCATGGATGC+TGG + chr1_2:47803084-47803103 Msa0073820:CDS 45.0%
! GCCCGAAGGTACAAAGAAAG+AGG - chr1_2:47798943-47798962 None:intergenic 50.0%
! TGTACCTTCGGGCATTGTGT+CGG + chr1_2:47798950-47798969 Msa0073820:CDS 50.0%
GGGAATGCTTTGACACAAGC+CGG + chr1_2:47799379-47799398 Msa0073820:intron 50.0%
TCAAGATCATTGCCCGTGGA+GGG - chr1_2:47799483-47799502 None:intergenic 50.0%
ACCGGACATTAGTGAGCTCA+TGG + chr1_2:47799512-47799531 Msa0073820:CDS 50.0%
AGTTCAGCCTCCTCTTGCAA+AGG - chr1_2:47799544-47799563 None:intergenic 50.0%
TTGCAAGAGGAGGCTGAACT+TGG + chr1_2:47799544-47799563 Msa0073820:CDS 50.0%
! ACTGGGTCTAGTGGGCATAT+TGG - chr1_2:47799906-47799925 None:intergenic 50.0%
! GTTGAAGAAGGTGGCCTTAC+TGG + chr1_2:47800204-47800223 Msa0073820:CDS 50.0%
CCATCAGCATCAGGATCTAG+AGG - chr1_2:47800267-47800286 None:intergenic 50.0%
CCTCTAGATCCTGATGCTGA+TGG + chr1_2:47800264-47800283 Msa0073820:CDS 50.0%
GGTACACCTTCTTCTCCTCA+AGG - chr1_2:47800335-47800354 None:intergenic 50.0%
TCTTCTTCCTCTTCAACGGG+AGG - chr1_2:47800642-47800661 None:intergenic 50.0%
GATCTCACGCATAAAGCTGG+AGG + chr1_2:47800789-47800808 Msa0073820:CDS 50.0%
TCACGCATAAAGCTGGAGGA+AGG + chr1_2:47800793-47800812 Msa0073820:CDS 50.0%
TGAAGCAGATGAGGATGAGG+AGG + chr1_2:47800963-47800982 Msa0073820:CDS 50.0%
TGAGGAGGAGGAAGTAGAAC+AGG + chr1_2:47800978-47800997 Msa0073820:CDS 50.0%
! CACATGTTCTGGTTGGTTGG+GGG + chr1_2:47801211-47801230 Msa0073820:intron 50.0%
! ACATGTTCTGGTTGGTTGGG+GGG + chr1_2:47801212-47801231 Msa0073820:intron 50.0%
AGATGCTTGGGGATGGACAT+GGG + chr1_2:47801507-47801526 Msa0073820:CDS 50.0%
CATTCCTGTGACCACCTATG+AGG - chr1_2:47801556-47801575 None:intergenic 50.0%
CTCATAGGTGGTCACAGGAA+TGG + chr1_2:47801554-47801573 Msa0073820:CDS 50.0%
TTGGGAGGGACACCAACTAT+CGG + chr1_2:47802656-47802675 Msa0073820:CDS 50.0%
ACGGCACAATCTCCGATAGT+TGG - chr1_2:47802671-47802690 None:intergenic 50.0%
TATAGCTGCGCGCAAGATCA+CGG - chr1_2:47802690-47802709 None:intergenic 50.0%
ACGGAGTGAGTCTCTAGACT+TGG - chr1_2:47802830-47802849 None:intergenic 50.0%
TTGCAGACCGCTTTATGACG+AGG + chr1_2:47802924-47802943 Msa0073820:intron 50.0%
CTCTCTCTGCCTTGATCTTG+GGG + chr1_2:47802951-47802970 Msa0073820:CDS 50.0%
! ATCTGAAACTGAGATCCCCG+TGG - chr1_2:47803016-47803035 None:intergenic 50.0%
! GTACCTTCGGGCATTGTGTC+GGG + chr1_2:47798951-47798970 Msa0073820:CDS 55.0%
! TTGCCCGTGGAGGGATTTTC+TGG - chr1_2:47799474-47799493 None:intergenic 55.0%
CTCAAGATCATTGCCCGTGG+AGG - chr1_2:47799484-47799503 None:intergenic 55.0%
CTGCTCAAGATCATTGCCCG+TGG - chr1_2:47799487-47799506 None:intergenic 55.0%
! GTCTAGTGGGCATATTGGCC+TGG - chr1_2:47799901-47799920 None:intergenic 55.0%
! ATGCAGGCAAGTGCTACTGC+TGG + chr1_2:47800074-47800093 Msa0073820:intron 55.0%
! GCCTTACTGGAGAGCGCAAA+CGG + chr1_2:47800217-47800236 Msa0073820:CDS 55.0%
ACCGTTTGCGCTCTCCAGTA+AGG - chr1_2:47800221-47800240 None:intergenic 55.0%
! TTACTGGAGAGCGCAAACGG+TGG + chr1_2:47800220-47800239 Msa0073820:CDS 55.0%
! TACTGGAGAGCGCAAACGGT+GGG + chr1_2:47800221-47800240 Msa0073820:CDS 55.0%
TCAACGGGAGGAACCCAAAG+CGG - chr1_2:47800630-47800649 None:intergenic 55.0%
TTGGGTTCCTCCCGTTGAAG+AGG + chr1_2:47800632-47800651 Msa0073820:CDS 55.0%
GTTGCAGGTGGATGAAGAGC+TGG + chr1_2:47800759-47800778 Msa0073820:intron 55.0%
AGCAGATGAGGATGAGGAGG+AGG + chr1_2:47800966-47800985 Msa0073820:CDS 55.0%
TGGTTGGGGGGTTGACAATC+AGG + chr1_2:47801224-47801243 Msa0073820:intron 55.0%
CCATCCCCAAGCATCTGCTA+AGG - chr1_2:47801503-47801522 None:intergenic 55.0%
CCTTAGCAGATGCTTGGGGA+TGG + chr1_2:47801500-47801519 Msa0073820:CDS 55.0%
CAGATGCTTGGGGATGGACA+TGG + chr1_2:47801506-47801525 Msa0073820:CDS 55.0%
ACCTCCTCATAGGTGGTCAC+AGG + chr1_2:47801549-47801568 Msa0073820:CDS 55.0%
TCCTGTGACCACCTATGAGG+AGG - chr1_2:47801553-47801572 None:intergenic 55.0%
GCGGCCGTCATTGATCAAGA+AGG + chr1_2:47802331-47802350 Msa0073820:intron 55.0%
AGATGCAGCTGTTGCCGTTG+TGG + chr1_2:47802978-47802997 Msa0073820:CDS 55.0%
TGTTGCCGTTGTGGCAGACT+TGG + chr1_2:47802987-47803006 Msa0073820:CDS 55.0%
GGTCTCCAAGTCTGCCACAA+CGG - chr1_2:47802995-47803014 None:intergenic 55.0%
TGTGGCAGACTTGGAGACCA+CGG + chr1_2:47802996-47803015 Msa0073820:CDS 55.0%
CTTCCCGACACAATGCCCGA+AGG - chr1_2:47798957-47798976 None:intergenic 60.0%
! CTTCGGGCATTGTGTCGGGA+AGG + chr1_2:47798955-47798974 Msa0073820:CDS 60.0%
AATCTCGTGGTCGGCCGCTT+TGG + chr1_2:47800613-47800632 Msa0073820:CDS 60.0%
! ATCTCGTGGTCGGCCGCTTT+GGG + chr1_2:47800614-47800633 Msa0073820:CDS 60.0%
GTGGCAGACTTGGAGACCAC+GGG + chr1_2:47802997-47803016 Msa0073820:CDS 60.0%
TGGCAGACTTGGAGACCACG+GGG + chr1_2:47802998-47803017 Msa0073820:CDS 60.0%
AAACGGTGGGTGCCCCGAAG+TGG + chr1_2:47800234-47800253 Msa0073820:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 47798919 47803113 47798919 ID=Msa0073820;Name=Msa0073820
chr1_2 mRNA 47798919 47803113 47798919 ID=Msa0073820-mRNA-1;Parent=Msa0073820;Name=Msa0073820-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|7|0|547
chr1_2 exon 47798919 47798976 47798919 ID=Msa0073820-mRNA-1:exon:14543;Parent=Msa0073820-mRNA-1
chr1_2 exon 47799422 47799590 47799422 ID=Msa0073820-mRNA-1:exon:14544;Parent=Msa0073820-mRNA-1
chr1_2 exon 47800200 47800683 47800200 ID=Msa0073820-mRNA-1:exon:14545;Parent=Msa0073820-mRNA-1
chr1_2 exon 47800766 47801176 47800766 ID=Msa0073820-mRNA-1:exon:14546;Parent=Msa0073820-mRNA-1
chr1_2 exon 47801406 47801609 47801406 ID=Msa0073820-mRNA-1:exon:14547;Parent=Msa0073820-mRNA-1
chr1_2 exon 47802647 47802780 47802647 ID=Msa0073820-mRNA-1:exon:14548;Parent=Msa0073820-mRNA-1
chr1_2 exon 47802930 47803113 47802930 ID=Msa0073820-mRNA-1:exon:14549;Parent=Msa0073820-mRNA-1
chr1_2 CDS 47798919 47798976 47798919 ID=Msa0073820-mRNA-1:cds;Parent=Msa0073820-mRNA-1
chr1_2 CDS 47799422 47799590 47799422 ID=Msa0073820-mRNA-1:cds;Parent=Msa0073820-mRNA-1
chr1_2 CDS 47800200 47800683 47800200 ID=Msa0073820-mRNA-1:cds;Parent=Msa0073820-mRNA-1
chr1_2 CDS 47800766 47801176 47800766 ID=Msa0073820-mRNA-1:cds;Parent=Msa0073820-mRNA-1
chr1_2 CDS 47801406 47801609 47801406 ID=Msa0073820-mRNA-1:cds;Parent=Msa0073820-mRNA-1
chr1_2 CDS 47802647 47802780 47802647 ID=Msa0073820-mRNA-1:cds;Parent=Msa0073820-mRNA-1
chr1_2 CDS 47802930 47803113 47802930 ID=Msa0073820-mRNA-1:cds;Parent=Msa0073820-mRNA-1
Gene Sequence

>Msa0073820

ATGGATGGGAACCACGGAGATCCTCTTTCTTTGTACCTTCGGGCATTGTGTCGGGAAGGTAGGATTATTGACATGCTTGAAGCTTTAGAGGCTATGGCCAACGATAACCAGAAAATCCCTCCACGGGCAATGATCTTGAGCAGAAAATACCGGACATTAGTGAGCTCATGGATTGAACCTTTGCAAGAGGAGGCTGAACTTGGTTATGAGATTGATTATATTGCTAGATATGTTGAAGAAGGTGGCCTTACTGGAGAGCGCAAACGGTGGGTGCCCCGAAGTGGTAAAACACCTCTAGATCCTGATGCTGATGGATTTATATATTCAAACCCAATGGAGACTTCCTTCAAACAAAGATGCCTTGAGGAGAAGAAGGTGTACCATAAGAAGCTTCTGAAGAAGTTGCAGTATGAAGGAATTGTAGCTTTAGGGGATGGTGCATCTGAATCCGATTATGTTAGAGTGATTGAGTGGCTAAAGAAAATCATAAAGGGGCCTGAACAGAATGCATTAAAGCCTAAGGCGGCTAGTAAAATGCTTGTGAATGAATTGAAGGAAGAACTAGAAGCACAAGGTTTACCAATCGATGGAACCAGAAATGTTCTTTACCAGCGTGTTCAGAAAGCAAGAAGAATAAATCAATCTCGTGGTCGGCCGCTTTGGGTTCCTCCCGTTGAAGAGGAAGAAGAAGTGGTTGATTCTTTATCTGTTGTGGATGAAGAGCTGGATGCATTGATCTCACGCATAAAGCTGGAGGAAGGAAATACAGAGTATTGGAAACGTCGCTTCTTAGGAGAAGGCTTAAATGGTGATAATGGAAATGCAATGGATGAAGGTGAATCAGAGTCCCCTGATGTTCAAGATTATATTGATGTTGTAGGGGATGATGCAAAAGAGGCTGAAGATGATGAAGCAGATGAGGATGAGGAGGAGGAAGTAGAACAGGTAGAAGAGGAAGTAGCACCAGTAGAGAACCAAGATGTAGAGAGGATAAAGGAAAAGGAAGTTGAATCTAAAAAACCCCTTCAAATGATTGGAGTCCAGCTGTTGAAAGATTCTGACGAACCCTCTGCCACTTCTAAAAAGTCAAGAAGAAGAAGATCAAGACGGAATATGGTTGAGGATGATGCCGATGATGATTGGTTTCCTTTGGACATATTTGAGGCGTTTAAGGAAATGAGGAATCGAAGAGTGTTTGATGTATCAGACATGTATACCTTAGCAGATGCTTGGGGATGGACATGGGAGAGAGAACTGAAGAACAAACCTCCTCATAGGTGGTCACAGGAATGGGAAGTAGATTTGGCAATAAAAGTTATGCAGAAGGTCATACAATTGGGAGGGACACCAACTATCGGAGATTGTGCCGTGATCTTGCGCGCAGCTATAACAGCACCTCTACCTTCAGCTTTCTTGACAATTCTGCAGACAACTCATAGTCTTGGCTATAAGTTTGGGAGACCGCTTTATGACGAGGTCATCTCTCTCTGCCTTGATCTTGGGGAACTAGATGCAGCTGTTGCCGTTGTGGCAGACTTGGAGACCACGGGGATCTCAGTTTCAGATCAGACTTTGGACAGGGTGATTTCTGCTAAACAGGGGATTGACAATCCTTCAAATGATGGCATGGATGCTGGACTGTAA

Protein sequence

>Msa0073820

MDGNHGDPLSLYLRALCREGRIIDMLEALEAMANDNQKIPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYVEEGGLTGERKRWVPRSGKTPLDPDADGFIYSNPMETSFKQRCLEEKKVYHKKLLKKLQYEGIVALGDGASESDYVRVIEWLKKIIKGPEQNALKPKAASKMLVNELKEELEAQGLPIDGTRNVLYQRVQKARRINQSRGRPLWVPPVEEEEEVVDSLSVVDEELDALISRIKLEEGNTEYWKRRFLGEGLNGDNGNAMDEGESESPDVQDYIDVVGDDAKEAEDDEADEDEEEEVEQVEEEVAPVENQDVERIKEKEVESKKPLQMIGVQLLKDSDEPSATSKKSRRRRSRRNMVEDDADDDWFPLDIFEAFKEMRNRRVFDVSDMYTLADAWGWTWERELKNKPPHRWSQEWEVDLAIKVMQKVIQLGGTPTIGDCAVILRAAITAPLPSAFLTILQTTHSLGYKFGRPLYDEVISLCLDLGELDAAVAVVADLETTGISVSDQTLDRVISAKQGIDNPSNDGMDAGL*