Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169230 | AFK49659.1 | 99.425 | 174 | 1 | 0 | 1 | 174 | 1 | 174 | 1.18e-126 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169230 | sp|Q8VYK4|NFYB8_ARATH | 66.272 | 169 | 49 | 5 | 2 | 168 | 6 | 168 | 1.04e-71 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169230 | I3TAW7 | 99.425 | 174 | 1 | 0 | 1 | 174 | 1 | 174 | 5.64e-127 | 363 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0169230 | TF | NF-YB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0076760 | Msa0169230 | 0.861461 | 1.009413e-63 | -8.615850e-47 |
| Msa0097580 | Msa0169230 | 0.804988 | 1.658228e-49 | -8.615850e-47 |
| Msa0169230 | Msa1257510 | 0.800374 | 1.484896e-48 | -8.615850e-47 |
| Msa0169230 | Msa1362790 | 0.803558 | 3.292010e-49 | -8.615850e-47 |
| Msa0169230 | Msa1369190 | 0.812151 | 4.896366e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169230 | MtrunA17_Chr1g0185911 | 99.425 | 174 | 1 | 0 | 1 | 174 | 1 | 174 | 1.09e-130 | 363 |
| Msa0169230 | MtrunA17_Chr7g0263601 | 70.000 | 170 | 35 | 7 | 11 | 174 | 12 | 171 | 4.49e-74 | 219 |
| Msa0169230 | MtrunA17_Chr5g0446491 | 60.127 | 158 | 49 | 3 | 1 | 150 | 1 | 152 | 1.75e-59 | 183 |
| Msa0169230 | MtrunA17_Chr3g0102351 | 68.217 | 129 | 39 | 1 | 1 | 129 | 1 | 127 | 2.54e-58 | 180 |
| Msa0169230 | MtrunA17_Chr2g0290491 | 65.926 | 135 | 36 | 2 | 9 | 143 | 3 | 127 | 4.67e-58 | 179 |
| Msa0169230 | MtrunA17_Chr8g0382931 | 69.912 | 113 | 32 | 1 | 24 | 136 | 23 | 133 | 5.87e-53 | 167 |
| Msa0169230 | MtrunA17_Chr4g0076321 | 68.067 | 119 | 33 | 3 | 22 | 136 | 10 | 127 | 3.79e-51 | 160 |
| Msa0169230 | MtrunA17_Chr8g0384451 | 66.055 | 109 | 35 | 1 | 28 | 136 | 39 | 145 | 5.29e-50 | 160 |
| Msa0169230 | MtrunA17_Chr1g0195851 | 69.474 | 95 | 29 | 0 | 28 | 122 | 35 | 129 | 1.16e-47 | 153 |
| Msa0169230 | MtrunA17_Chr2g0296321 | 71.429 | 91 | 26 | 0 | 28 | 118 | 65 | 155 | 9.21e-47 | 153 |
| Msa0169230 | MtrunA17_Chr4g0067091 | 70.330 | 91 | 27 | 0 | 28 | 118 | 21 | 111 | 6.67e-46 | 150 |
| Msa0169230 | MtrunA17_Chr4g0076381 | 61.682 | 107 | 37 | 1 | 16 | 118 | 41 | 147 | 5.43e-45 | 148 |
| Msa0169230 | MtrunA17_Chr1g0165041 | 58.824 | 102 | 41 | 1 | 28 | 128 | 5 | 106 | 7.95e-43 | 141 |
| Msa0169230 | MtrunA17_Chr1g0191981 | 57.609 | 92 | 39 | 0 | 29 | 120 | 4 | 95 | 2.20e-37 | 125 |
| Msa0169230 | MtrunA17_Chr1g0159271 | 50.000 | 82 | 41 | 0 | 43 | 124 | 1 | 82 | 3.12e-24 | 91.3 |
| Msa0169230 | MtrunA17_Chr5g0446601 | 44.118 | 102 | 57 | 0 | 22 | 123 | 17 | 118 | 1.08e-23 | 92.0 |
| Msa0169230 | MtrunA17_Chr1g0159291 | 40.789 | 76 | 45 | 0 | 34 | 109 | 7 | 82 | 5.55e-19 | 77.0 |
| Msa0169230 | MtrunA17_Chr2g0307551 | 33.645 | 107 | 71 | 0 | 26 | 132 | 8 | 114 | 6.51e-19 | 79.0 |
| Msa0169230 | MtrunA17_Chr1g0158951 | 61.111 | 54 | 21 | 0 | 64 | 117 | 24 | 77 | 9.65e-19 | 77.0 |
| Msa0169230 | MtrunA17_Chr4g0062271 | 41.176 | 85 | 48 | 1 | 30 | 114 | 12 | 94 | 1.76e-17 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169230 | AT2G37060.2 | 66.272 | 169 | 49 | 5 | 2 | 168 | 6 | 168 | 1.05e-72 | 216 |
| Msa0169230 | AT2G37060.3 | 66.272 | 169 | 49 | 5 | 2 | 168 | 6 | 168 | 1.05e-72 | 216 |
| Msa0169230 | AT2G37060.1 | 66.272 | 169 | 49 | 5 | 2 | 168 | 6 | 168 | 1.05e-72 | 216 |
| Msa0169230 | AT2G38880.7 | 71.528 | 144 | 30 | 3 | 1 | 143 | 1 | 134 | 1.00e-67 | 202 |
| Msa0169230 | AT3G53340.5 | 67.500 | 160 | 39 | 5 | 17 | 168 | 19 | 173 | 1.67e-66 | 201 |
| Msa0169230 | AT3G53340.1 | 67.500 | 160 | 39 | 5 | 17 | 168 | 19 | 173 | 1.67e-66 | 201 |
| Msa0169230 | AT2G38880.3 | 70.548 | 146 | 30 | 4 | 1 | 143 | 1 | 136 | 8.45e-66 | 198 |
| Msa0169230 | AT2G38880.2 | 70.548 | 146 | 30 | 4 | 1 | 143 | 1 | 136 | 1.14e-65 | 197 |
| Msa0169230 | AT2G38880.1 | 70.548 | 146 | 30 | 4 | 1 | 143 | 1 | 136 | 1.14e-65 | 197 |
| Msa0169230 | AT2G38880.5 | 70.548 | 146 | 30 | 4 | 1 | 143 | 1 | 136 | 1.14e-65 | 197 |
| Msa0169230 | AT2G38880.11 | 60.947 | 169 | 30 | 4 | 1 | 143 | 1 | 159 | 1.27e-61 | 188 |
| Msa0169230 | AT2G38880.8 | 60.947 | 169 | 30 | 4 | 1 | 143 | 1 | 159 | 1.27e-61 | 188 |
| Msa0169230 | AT3G53340.3 | 81.481 | 108 | 18 | 1 | 17 | 124 | 19 | 124 | 1.30e-60 | 185 |
| Msa0169230 | AT3G53340.2 | 81.481 | 108 | 18 | 1 | 17 | 124 | 19 | 124 | 1.30e-60 | 185 |
| Msa0169230 | AT2G38880.4 | 75.630 | 119 | 19 | 2 | 1 | 118 | 1 | 110 | 3.39e-60 | 182 |
| Msa0169230 | AT3G53340.4 | 84.314 | 102 | 14 | 1 | 17 | 118 | 19 | 118 | 1.25e-59 | 182 |
| Msa0169230 | AT2G38880.9 | 76.271 | 118 | 20 | 2 | 1 | 118 | 1 | 110 | 2.08e-59 | 182 |
| Msa0169230 | AT2G38880.10 | 76.271 | 118 | 20 | 2 | 1 | 118 | 1 | 110 | 2.08e-59 | 182 |
| Msa0169230 | AT2G38880.6 | 76.271 | 118 | 20 | 2 | 1 | 118 | 1 | 110 | 2.08e-59 | 182 |
| Msa0169230 | AT4G14540.1 | 72.034 | 118 | 25 | 2 | 1 | 118 | 1 | 110 | 1.39e-58 | 180 |
| Msa0169230 | AT5G47640.1 | 74.359 | 117 | 24 | 2 | 28 | 144 | 26 | 136 | 1.84e-57 | 179 |
| Msa0169230 | AT2G13570.1 | 63.566 | 129 | 36 | 3 | 9 | 128 | 7 | 133 | 3.27e-52 | 166 |
| Msa0169230 | AT2G47810.1 | 70.000 | 90 | 27 | 0 | 28 | 117 | 50 | 139 | 3.60e-45 | 146 |
| Msa0169230 | AT5G47670.2 | 56.780 | 118 | 46 | 1 | 14 | 131 | 19 | 131 | 4.22e-45 | 147 |
| Msa0169230 | AT5G47670.1 | 61.538 | 104 | 40 | 0 | 28 | 131 | 57 | 160 | 8.98e-45 | 147 |
| Msa0169230 | AT5G47670.3 | 61.538 | 104 | 40 | 0 | 28 | 131 | 57 | 160 | 8.98e-45 | 147 |
| Msa0169230 | AT1G21970.1 | 53.043 | 115 | 53 | 1 | 26 | 139 | 56 | 170 | 7.86e-43 | 143 |
| Msa0169230 | AT1G09030.1 | 52.830 | 106 | 48 | 1 | 29 | 132 | 3 | 108 | 9.00e-39 | 129 |
| Msa0169230 | AT5G08190.2 | 38.679 | 106 | 59 | 2 | 29 | 130 | 11 | 114 | 5.02e-20 | 82.4 |
| Msa0169230 | AT5G23090.4 | 36.792 | 106 | 61 | 2 | 30 | 131 | 12 | 115 | 5.02e-19 | 79.7 |
| Msa0169230 | AT5G08190.1 | 41.860 | 86 | 48 | 1 | 29 | 114 | 11 | 94 | 1.42e-18 | 78.6 |
| Msa0169230 | AT5G23090.5 | 41.176 | 85 | 48 | 1 | 30 | 114 | 12 | 94 | 6.46e-18 | 76.6 |
| Msa0169230 | AT5G23090.2 | 41.176 | 85 | 48 | 1 | 30 | 114 | 12 | 94 | 6.46e-18 | 76.6 |
| Msa0169230 | AT5G23090.1 | 41.176 | 85 | 48 | 1 | 30 | 114 | 12 | 94 | 6.46e-18 | 76.6 |
| Msa0169230 | AT5G23090.3 | 42.029 | 69 | 38 | 1 | 46 | 114 | 15 | 81 | 1.93e-13 | 64.7 |
Find 58 sgRNAs with CRISPR-Local
Find 287 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTCTTTCTCTTCTCTTTC+TGG | 0.035702 | 1_4:+52375194 | None:intergenic |
| ATTGTTGTTTCTCTCTTTGA+TGG | 0.244029 | 1_4:-52372145 | Msa0169230:three_prime_UTR |
| GAGAAGAGAAAGACCATTAA+TGG | 0.272230 | 1_4:-52375187 | Msa0169230:CDS |
| TAACAAATCATCTCCATTAA+TGG | 0.277036 | 1_4:+52375174 | None:intergenic |
| CATATTGCAGTTTGTTCATC+AGG | 0.293386 | 1_4:-52374664 | Msa0169230:intron |
| TTATGGGCTATGGCTACTTT+AGG | 0.294228 | 1_4:-52375154 | Msa0169230:CDS |
| TGTCAAAGCACAAATGTTCT+TGG | 0.298403 | 1_4:-52372104 | Msa0169230:three_prime_UTR |
| CGTACCTAGAAAAGTGTATT+TGG | 0.300083 | 1_4:+52376070 | None:intergenic |
| TTTATTATTTCATTTAGTTT+AGG | 0.302585 | 1_4:-52372172 | Msa0169230:three_prime_UTR |
| TTTGCTTACAAGGCAAATAT+AGG | 0.342736 | 1_4:+52376121 | None:intergenic |
| TGATTGGATGTTTGCTTACA+AGG | 0.361057 | 1_4:+52376111 | None:intergenic |
| TAATGGAGATGATTTGTTAT+GGG | 0.363879 | 1_4:-52375170 | Msa0169230:CDS |
| TTAATGGAGATGATTTGTTA+TGG | 0.386568 | 1_4:-52375171 | Msa0169230:CDS |
| ACATATTATCTTCCCTTTAG+TGG | 0.405101 | 1_4:+52372299 | None:intergenic |
| TCTCGTGGCTTTCTTCGCAT+TGG | 0.434390 | 1_4:+52375851 | None:intergenic |
| GACCTGGAGGACCGCCAACT+TGG | 0.437143 | 1_4:+52374807 | None:intergenic |
| TTAGCTGCCTTGCCCACTAA+AGG | 0.439195 | 1_4:-52372312 | Msa0169230:three_prime_UTR |
| GAGGTGCAACACAATGAAAA+TGG | 0.439869 | 1_4:+52372502 | None:intergenic |
| GCAGGTGCATCCACAACATC+TGG | 0.444089 | 1_4:-52372576 | Msa0169230:intron |
| TAGCTGCCTTGCCCACTAAA+GGG | 0.445753 | 1_4:-52372311 | Msa0169230:three_prime_UTR |
| CTTGCTAGGTACACCTTAAG+TGG | 0.449127 | 1_4:+52375112 | None:intergenic |
| TGGTAGGAAAATGGTGGAAG+AGG | 0.453397 | 1_4:+52372483 | None:intergenic |
| ACAAATGTTCTTGGAAGGAT+TGG | 0.454730 | 1_4:-52372095 | Msa0169230:three_prime_UTR |
| CTCGAGAAGAAACAATTGAT+TGG | 0.456097 | 1_4:+52376095 | None:intergenic |
| GACCAAGTTGGCGGTCCTCC+AGG | 0.458458 | 1_4:-52374809 | Msa0169230:CDS |
| ATTCTGCTAATGTTAGCTAT+AGG | 0.459912 | 1_4:+52375766 | None:intergenic |
| TGGCTTTCTTCGCATTGGTT+CGG | 0.462126 | 1_4:+52375856 | None:intergenic |
| CATATTATCTTCCCTTTAGT+GGG | 0.464109 | 1_4:+52372300 | None:intergenic |
| ATGTTCTTGGAAGGATTGGC+AGG | 0.477353 | 1_4:-52372091 | None:intergenic |
| AGACTATATAGAACCACTTA+AGG | 0.485870 | 1_4:-52375125 | Msa0169230:CDS |
| TTTGAGCTATATTGATTCCC+AGG | 0.487521 | 1_4:-52374637 | Msa0169230:intron |
| AGATGATTTGTTATGGGCTA+TGG | 0.505790 | 1_4:-52375164 | Msa0169230:CDS |
| TCCTCCAGGTCAAAATGCTC+AGG | 0.507423 | 1_4:-52374795 | Msa0169230:intron |
| GATGAACTGAAACAATGGTT+TGG | 0.515083 | 1_4:-52372433 | Msa0169230:three_prime_UTR |
| CAAAAGATGAACTGAAACAA+TGG | 0.520156 | 1_4:-52372438 | Msa0169230:three_prime_UTR |
| TATCTTCCCTTTAGTGGGCA+AGG | 0.521204 | 1_4:+52372305 | None:intergenic |
| CACAATGAAAATGGCAGGTG+AGG | 0.522585 | 1_4:+52372511 | None:intergenic |
| GTTAGAAACAGTGATGGATC+TGG | 0.524015 | 1_4:-52374839 | Msa0169230:CDS |
| TGCAACACAATGAAAATGGC+AGG | 0.524060 | 1_4:+52372506 | None:intergenic |
| TTGGTTCGGTGCATCTGCCA+TGG | 0.526473 | 1_4:+52375870 | None:intergenic |
| TTACCTCTCTGAACCTTGCT+AGG | 0.526654 | 1_4:+52375098 | None:intergenic |
| AAAGCACAAATGTTCTTGGA+AGG | 0.544059 | 1_4:-52372100 | Msa0169230:three_prime_UTR |
| TGTGTAGAAACTAGAAAGCA+TGG | 0.553914 | 1_4:-52372388 | Msa0169230:three_prime_UTR |
| TTCTGATAGGGTGATAGTAA+AGG | 0.555051 | 1_4:-52374866 | Msa0169230:intron |
| CACTTAAGGTGTACCTAGCA+AGG | 0.580922 | 1_4:-52375111 | Msa0169230:CDS |
| ATATTGCAGTTTGTTCATCA+GGG | 0.598604 | 1_4:-52374663 | Msa0169230:intron |
| GGATCTGTTAGAAACAGTGA+TGG | 0.605861 | 1_4:-52374845 | Msa0169230:CDS |
| TCTGTTCACCACCACTCTCG+TGG | 0.616032 | 1_4:+52375836 | None:intergenic |
| TGCGAAGAAAGCCACGAGAG+TGG | 0.627075 | 1_4:-52375847 | Msa0169230:CDS |
| GGTAGACGAGACCAAGTTGG+CGG | 0.631551 | 1_4:-52374818 | Msa0169230:CDS |
| TCTCATCATGACAAGTTGCA+TGG | 0.631594 | 1_4:+52372255 | None:intergenic |
| GTGTAGAAACTAGAAAGCAT+GGG | 0.636238 | 1_4:-52372387 | Msa0169230:three_prime_UTR |
| TCTGGTAGACGAGACCAAGT+TGG | 0.636481 | 1_4:-52374821 | Msa0169230:CDS |
| GAAGGCATAACCAGATGTTG+TGG | 0.663094 | 1_4:+52372566 | None:intergenic |
| GAAGAAAGCCACGAGAGTGG+TGG | 0.673522 | 1_4:-52375844 | Msa0169230:CDS |
| GGTGGTGAACAGAGTCCACG+TGG | 0.738315 | 1_4:-52375826 | Msa0169230:CDS |
| GAAGCAGAAGAAGAGCCACG+TGG | 0.770183 | 1_4:+52375811 | None:intergenic |
| GTACCTAGCAAGGTTCAGAG+AGG | 0.773002 | 1_4:-52375101 | Msa0169230:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTATTTCATTTAGTTT+AGG | - | chr1_4:52376050-52376069 | Msa0169230:intron | 10.0% |
| !!! | AATAAAAAATACTATGGTTT+TGG | + | chr1_4:52372594-52372613 | None:intergenic | 15.0% |
| !! | GTAATATAAATTTCAGTTAT+TGG | - | chr1_4:52372683-52372702 | Msa0169230:intron | 15.0% |
| !!! | ATATAATAAATTGTGGTTTT+TGG | - | chr1_4:52372855-52372874 | Msa0169230:intron | 15.0% |
| !!! | TTTAATTTGTGTTTTTATTC+TGG | - | chr1_4:52373467-52373486 | Msa0169230:intron | 15.0% |
| !! | GTATATTGAAAAAAAGTGAA+TGG | + | chr1_4:52372266-52372285 | None:intergenic | 20.0% |
| !! | AGTTGAAAAATGCTTAAAAA+TGG | - | chr1_4:52372635-52372654 | Msa0169230:intron | 20.0% |
| !! | ATGGGTAATATAATAAATTG+TGG | - | chr1_4:52372848-52372867 | Msa0169230:intron | 20.0% |
| !! | TTGTCAATTTATATGATGTT+TGG | - | chr1_4:52372917-52372936 | Msa0169230:intron | 20.0% |
| !! | AAATAATACAATCAATCAGA+GGG | + | chr1_4:52373280-52373299 | None:intergenic | 20.0% |
| !! | AAAATAATACAATCAATCAG+AGG | + | chr1_4:52373281-52373300 | None:intergenic | 20.0% |
| !!! | ATTTTGATATAGCAAACATT+GGG | + | chr1_4:52374172-52374191 | None:intergenic | 20.0% |
| !!! | AATCAATAAAGTTCTGATAA+AGG | + | chr1_4:52374491-52374510 | None:intergenic | 20.0% |
| !! | AAAGATCAAAGAGAAAAAAA+TGG | + | chr1_4:52375058-52375077 | None:intergenic | 20.0% |
| ! | TATTGAAAAAAAGTGAATGG+TGG | + | chr1_4:52372263-52372282 | None:intergenic | 25.0% |
| !!! | ATTCGTTGGTTTTAGTTTTA+GGG | - | chr1_4:52372321-52372340 | Msa0169230:three_prime_UTR | 25.0% |
| ! | AAAAAAGCTTTACCTTCAAA+TGG | - | chr1_4:52372483-52372502 | Msa0169230:three_prime_UTR | 25.0% |
| ! | AAAAAGCTTTACCTTCAAAT+GGG | - | chr1_4:52372484-52372503 | Msa0169230:three_prime_UTR | 25.0% |
| !!! | AATACTATGGTTTTGGAATT+GGG | + | chr1_4:52372587-52372606 | None:intergenic | 25.0% |
| !!! | AAATACTATGGTTTTGGAAT+TGG | + | chr1_4:52372588-52372607 | None:intergenic | 25.0% |
| !! | TTTTATGCTCTCTTTTAGAT+AGG | - | chr1_4:52372661-52372680 | Msa0169230:intron | 25.0% |
| ! | AAATTTCAGTTATTGGCATT+TGG | - | chr1_4:52372690-52372709 | Msa0169230:intron | 25.0% |
| ! | AATTTCAGTTATTGGCATTT+GGG | - | chr1_4:52372691-52372710 | Msa0169230:intron | 25.0% |
| ! | TTTGCTAATTTATATGATGC+TGG | - | chr1_4:52372743-52372762 | Msa0169230:intron | 25.0% |
| ! | TTGCTAATTTATATGATGCT+GGG | - | chr1_4:52372744-52372763 | Msa0169230:intron | 25.0% |
| !!! | TTTTTTACCCTCTTTTTAGA+TGG | - | chr1_4:52372829-52372848 | Msa0169230:intron | 25.0% |
| !! | TTTTTACCCTCTTTTTAGAT+GGG | - | chr1_4:52372830-52372849 | Msa0169230:intron | 25.0% |
| ! | ATATTACCCATCTAAAAAGA+GGG | + | chr1_4:52372839-52372858 | None:intergenic | 25.0% |
| ! | TATATTACCCATCTAAAAAG+AGG | + | chr1_4:52372840-52372859 | None:intergenic | 25.0% |
| !!! | ATGTTTGGTGAAAATCTTTT+AGG | - | chr1_4:52372932-52372951 | Msa0169230:intron | 25.0% |
| !!! | TGTTTGGTGAAAATCTTTTA+GGG | - | chr1_4:52372933-52372952 | Msa0169230:intron | 25.0% |
| !!! | TTTTTGTTTGTTGTCTGAAT+TGG | - | chr1_4:52372964-52372983 | Msa0169230:intron | 25.0% |
| ! | TAACAAATCATCTCCATTAA+TGG | + | chr1_4:52373051-52373070 | None:intergenic | 25.0% |
| !!! | TTAATGGAGATGATTTGTTA+TGG | - | chr1_4:52373051-52373070 | Msa0169230:intron | 25.0% |
| !!! | TAATGGAGATGATTTGTTAT+GGG | - | chr1_4:52373052-52373071 | Msa0169230:intron | 25.0% |
| ! | CCATAAAGAACATTATCAAA+TGG | + | chr1_4:52373169-52373188 | None:intergenic | 25.0% |
| !!! | CCATTTGATAATGTTCTTTA+TGG | - | chr1_4:52373166-52373185 | Msa0169230:intron | 25.0% |
| ! | AATAATACAATCAATCAGAG+GGG | + | chr1_4:52373279-52373298 | None:intergenic | 25.0% |
| !! | TTTAGTTCCAGATTTCAATT+TGG | + | chr1_4:52373893-52373912 | None:intergenic | 25.0% |
| ! | TCAAACTGAATGTTAACATT+TGG | + | chr1_4:52373961-52373980 | None:intergenic | 25.0% |
| !!! | GATTTTGATATAGCAAACAT+TGG | + | chr1_4:52374173-52374192 | None:intergenic | 25.0% |
| !!! | ATGTTTGCTATATCAAAATC+TGG | - | chr1_4:52374173-52374192 | Msa0169230:intron | 25.0% |
| ! | TATATCAAAATCTGGTATTC+AGG | - | chr1_4:52374181-52374200 | Msa0169230:intron | 25.0% |
| ! | ATTGAATTTCAACATAGACA+AGG | + | chr1_4:52374266-52374285 | None:intergenic | 25.0% |
| ! | TCTTCATAATAACTCAATCT+GGG | + | chr1_4:52374290-52374309 | None:intergenic | 25.0% |
| ! | AAGAGCAATCACAATATATA+TGG | + | chr1_4:52374355-52374374 | None:intergenic | 25.0% |
| ! | ATATATATTGTGATTGCTCT+TGG | - | chr1_4:52374354-52374373 | Msa0169230:intron | 25.0% |
| ! | CAAACAAACAAAATTCAGTA+TGG | + | chr1_4:52374798-52374817 | None:intergenic | 25.0% |
| ! | AAGAATTAAGAGTAGTGATT+TGG | - | chr1_4:52375509-52375528 | Msa0169230:intron | 25.0% |
| !! | TATTCATGATTTTGCATTGA+AGG | + | chr1_4:52375677-52375696 | None:intergenic | 25.0% |
| !!! | GGTTTGGTGATTTTAAATTT+AGG | - | chr1_4:52375805-52375824 | Msa0169230:CDS | 25.0% |
| !! | AAAATTTTGTTACGGTATTC+AGG | - | chr1_4:52375862-52375881 | Msa0169230:CDS | 25.0% |
| TTTGCTTACAAGGCAAATAT+AGG | + | chr1_4:52372104-52372123 | None:intergenic | 30.0% | |
| ! | AGTGAATGGTGGAAATTAAA+TGG | + | chr1_4:52372252-52372271 | None:intergenic | 30.0% |
| !! | TTTTCTTTGATCTGATTCGT+TGG | - | chr1_4:52372307-52372326 | Msa0169230:three_prime_UTR | 30.0% |
| !!! | GATTCGTTGGTTTTAGTTTT+AGG | - | chr1_4:52372320-52372339 | Msa0169230:three_prime_UTR | 30.0% |
| ATTCTGCTAATGTTAGCTAT+AGG | + | chr1_4:52372459-52372478 | None:intergenic | 30.0% | |
| ! | TTTGTTGTCTGAATTGGAAA+TGG | - | chr1_4:52372970-52372989 | Msa0169230:intron | 30.0% |
| ! | TGAATTGGAAATGGATGTTT+TGG | - | chr1_4:52372979-52372998 | Msa0169230:intron | 30.0% |
| ! | GAATTGGAAATGGATGTTTT+GGG | - | chr1_4:52372980-52372999 | Msa0169230:intron | 30.0% |
| AGACTATATAGAACCACTTA+AGG | - | chr1_4:52373097-52373116 | Msa0169230:intron | 30.0% | |
| !! | TTTTTATTCTGGTGACTTGT+TGG | - | chr1_4:52373478-52373497 | Msa0169230:intron | 30.0% |
| TATGTACTTTCTCTTGATGT+TGG | - | chr1_4:52373529-52373548 | Msa0169230:intron | 30.0% | |
| ! | ATATTGCAGTTTGTTCATCA+GGG | - | chr1_4:52373559-52373578 | Msa0169230:intron | 30.0% |
| AACAAGTTCATGCTCATTTA+TGG | - | chr1_4:52373660-52373679 | Msa0169230:intron | 30.0% | |
| CAATACATGTTGCCAATTTA+AGG | - | chr1_4:52373738-52373757 | Msa0169230:intron | 30.0% | |
| TTTCGACTGAATCAATGAAT+TGG | + | chr1_4:52373779-52373798 | None:intergenic | 30.0% | |
| TTGATTCAGTCGAAATAGAT+TGG | - | chr1_4:52373784-52373803 | Msa0169230:intron | 30.0% | |
| TGATTCAGTCGAAATAGATT+GGG | - | chr1_4:52373785-52373804 | Msa0169230:intron | 30.0% | |
| TATGTAAGCAGATAATTACG+TGG | + | chr1_4:52373862-52373881 | None:intergenic | 30.0% | |
| CAGATTTCAATTTGGATGAT+TGG | + | chr1_4:52373885-52373904 | None:intergenic | 30.0% | |
| CAATCATCCAAATTGAAATC+TGG | - | chr1_4:52373883-52373902 | Msa0169230:intron | 30.0% | |
| AAAACAGAATGGATCAATAG+GGG | + | chr1_4:52374220-52374239 | None:intergenic | 30.0% | |
| CAAAACAGAATGGATCAATA+GGG | + | chr1_4:52374221-52374240 | None:intergenic | 30.0% | |
| TCAAAACAGAATGGATCAAT+AGG | + | chr1_4:52374222-52374241 | None:intergenic | 30.0% | |
| !! | ATCCATTCTGTTTTGAGTAT+CGG | - | chr1_4:52374226-52374245 | Msa0169230:intron | 30.0% |
| GTCTTCATAATAACTCAATC+TGG | + | chr1_4:52374291-52374310 | None:intergenic | 30.0% | |
| CAATCACAATATATATGGTG+GGG | + | chr1_4:52374350-52374369 | None:intergenic | 30.0% | |
| GCAATCACAATATATATGGT+GGG | + | chr1_4:52374351-52374370 | None:intergenic | 30.0% | |
| AGCAATCACAATATATATGG+TGG | + | chr1_4:52374352-52374371 | None:intergenic | 30.0% | |
| !!! | TTTTTTGCAGCATCTTCTAT+TGG | - | chr1_4:52374606-52374625 | Msa0169230:intron | 30.0% |
| TGGTTGTGTTAATAACCTTT+AGG | - | chr1_4:52374626-52374645 | Msa0169230:intron | 30.0% | |
| ! | CCAATATGGTACTATCTTTT+GGG | + | chr1_4:52374729-52374748 | None:intergenic | 30.0% |
| ! | TCCAATATGGTACTATCTTT+TGG | + | chr1_4:52374730-52374749 | None:intergenic | 30.0% |
| ATTCGAAAGTTACAAACCAA+AGG | + | chr1_4:52374861-52374880 | None:intergenic | 30.0% | |
| TAATAGTAGCATCAGATTTG+TGG | + | chr1_4:52375126-52375145 | None:intergenic | 30.0% | |
| TCAAACAAAAGCTCAAATGT+GGG | + | chr1_4:52375342-52375361 | None:intergenic | 30.0% | |
| ATCAAACAAAAGCTCAAATG+TGG | + | chr1_4:52375343-52375362 | None:intergenic | 30.0% | |
| !! | CAAGTTCTGACTTTGTATTT+TGG | + | chr1_4:52375371-52375390 | None:intergenic | 30.0% |
| !! | CTGATTTTGACATGACAATT+CGG | - | chr1_4:52375397-52375416 | Msa0169230:intron | 30.0% |
| CCTAAGAAATATGTTCATAG+TGG | + | chr1_4:52375594-52375613 | None:intergenic | 30.0% | |
| CCACTATGAACATATTTCTT+AGG | - | chr1_4:52375591-52375610 | Msa0169230:intron | 30.0% | |
| !! | TTAATTTGTTGCTGATTTGC+AGG | - | chr1_4:52375628-52375647 | Msa0169230:intron | 30.0% |
| !! | TTGTCTTTTTGGTAGGAAAA+TGG | + | chr1_4:52375751-52375770 | None:intergenic | 30.0% |
| ! | TTGTTTCAGTTCATCTTTTG+AGG | + | chr1_4:52375784-52375803 | None:intergenic | 30.0% |
| CAAAAGATGAACTGAAACAA+TGG | - | chr1_4:52375784-52375803 | Msa0169230:CDS | 30.0% | |
| ! | TGGGTGTCAAAATTTTGTTA+CGG | - | chr1_4:52375854-52375873 | Msa0169230:CDS | 30.0% |
| CATATTATCTTCCCTTTAGT+GGG | + | chr1_4:52375925-52375944 | None:intergenic | 30.0% | |
| ACATATTATCTTCCCTTTAG+TGG | + | chr1_4:52375926-52375945 | None:intergenic | 30.0% | |
| !! | ATTGTTGTTTCTCTCTTTGA+TGG | - | chr1_4:52376077-52376096 | Msa0169230:five_prime_UTR | 30.0% |
| TGATTGGATGTTTGCTTACA+AGG | + | chr1_4:52372114-52372133 | None:intergenic | 35.0% | |
| CTCGAGAAGAAACAATTGAT+TGG | + | chr1_4:52372130-52372149 | None:intergenic | 35.0% | |
| ! | CGTACCTAGAAAAGTGTATT+TGG | + | chr1_4:52372155-52372174 | None:intergenic | 35.0% |
| TGCACATGGATGAAATTGAA+TGG | + | chr1_4:52372200-52372219 | None:intergenic | 35.0% | |
| TGGTGGAAATTAAATGGTGA+TGG | + | chr1_4:52372246-52372265 | None:intergenic | 35.0% | |
| ! | TTCGCAATTTTCCCATTTGA+AGG | + | chr1_4:52372498-52372517 | None:intergenic | 35.0% |
| TTATTGGCATTTGGGTCTAT+TGG | - | chr1_4:52372699-52372718 | Msa0169230:intron | 35.0% | |
| CTAATTTATATGATGCTGGG+TGG | - | chr1_4:52372747-52372766 | Msa0169230:intron | 35.0% | |
| ! | TGCTGGGTGGAAAATATTTT+AGG | - | chr1_4:52372760-52372779 | Msa0169230:intron | 35.0% |
| ! | GCTGGGTGGAAAATATTTTA+GGG | - | chr1_4:52372761-52372780 | Msa0169230:intron | 35.0% |
| !!! | ATTGTGGTTTTTGGCAAATG+TGG | - | chr1_4:52372864-52372883 | Msa0169230:intron | 35.0% |
| GAGAAGAGAAAGACCATTAA+TGG | - | chr1_4:52373035-52373054 | Msa0169230:intron | 35.0% | |
| !! | AGATGATTTGTTATGGGCTA+TGG | - | chr1_4:52373058-52373077 | Msa0169230:intron | 35.0% |
| TCGACATTTCAAAATCACCA+GGG | + | chr1_4:52373225-52373244 | None:intergenic | 35.0% | |
| !!! | TGGTGATTTTGAAATGTCGA+CGG | - | chr1_4:52373225-52373244 | Msa0169230:intron | 35.0% |
| TTCTGATAGGGTGATAGTAA+AGG | - | chr1_4:52373356-52373375 | Msa0169230:intron | 35.0% | |
| ! | CATATTGCAGTTTGTTCATC+AGG | - | chr1_4:52373558-52373577 | Msa0169230:intron | 35.0% |
| !! | TTTGAGCTATATTGATTCCC+AGG | - | chr1_4:52373585-52373604 | Msa0169230:intron | 35.0% |
| ! | ATGTTGCCAATTTAAGGCTA+TGG | - | chr1_4:52373744-52373763 | Msa0169230:intron | 35.0% |
| ! | AGCTAACCATAGCCTTAAAT+TGG | + | chr1_4:52373753-52373772 | None:intergenic | 35.0% |
| GATTCAGTCGAAATAGATTG+GGG | - | chr1_4:52373786-52373805 | Msa0169230:intron | 35.0% | |
| GATAATTACGTGGATAATCC+TGG | + | chr1_4:52373852-52373871 | None:intergenic | 35.0% | |
| AAAAATGAGCAAGCAAGGTA+AGG | + | chr1_4:52373936-52373955 | None:intergenic | 35.0% | |
| TGGAAAAAAATGAGCAAGCA+AGG | + | chr1_4:52373941-52373960 | None:intergenic | 35.0% | |
| ! | TTTGAGATCGTGTATTTCCT+GGG | - | chr1_4:52373976-52373995 | Msa0169230:intron | 35.0% |
| CAGGACAGTGTAACTTATAT+GGG | + | chr1_4:52374012-52374031 | None:intergenic | 35.0% | |
| ACAGGACAGTGTAACTTATA+TGG | + | chr1_4:52374013-52374032 | None:intergenic | 35.0% | |
| TTATCTCAGTCTAACTATCC+AGG | - | chr1_4:52374049-52374068 | Msa0169230:intron | 35.0% | |
| TATCTCAGTCTAACTATCCA+GGG | - | chr1_4:52374050-52374069 | Msa0169230:intron | 35.0% | |
| ! | AGTTTGGAGTATGAGATAAG+TGG | + | chr1_4:52374112-52374131 | None:intergenic | 35.0% |
| AATCTGGTATTCAGGTCTAA+TGG | - | chr1_4:52374189-52374208 | Msa0169230:intron | 35.0% | |
| ATCTGGTATTCAGGTCTAAT+GGG | - | chr1_4:52374190-52374209 | Msa0169230:intron | 35.0% | |
| GAAAACAGGGAGATAGAAAT+CGG | + | chr1_4:52374427-52374446 | None:intergenic | 35.0% | |
| TGAGAAGATTAGGGAAAACA+GGG | + | chr1_4:52374440-52374459 | None:intergenic | 35.0% | |
| GAGAAAGAGTGAGAAGATTA+GGG | + | chr1_4:52374449-52374468 | None:intergenic | 35.0% | |
| AGAGAAAGAGTGAGAAGATT+AGG | + | chr1_4:52374450-52374469 | None:intergenic | 35.0% | |
| AGACAATAGCTAGCTAAAGT+TGG | + | chr1_4:52374531-52374550 | None:intergenic | 35.0% | |
| TGTTATGCAGCTGTTAGATT+CGG | + | chr1_4:52374566-52374585 | None:intergenic | 35.0% | |
| TTAATAACCTTTAGGCCTGA+AGG | - | chr1_4:52374634-52374653 | Msa0169230:intron | 35.0% | |
| GTACTGTTATGCATTCTACT+GGG | + | chr1_4:52374683-52374702 | None:intergenic | 35.0% | |
| AGTACTGTTATGCATTCTAC+TGG | + | chr1_4:52374684-52374703 | None:intergenic | 35.0% | |
| CCCAAAAGATAGTACCATAT+TGG | - | chr1_4:52374726-52374745 | Msa0169230:intron | 35.0% | |
| TCTCTAAACATATCAGTCCT+GGG | + | chr1_4:52374758-52374777 | None:intergenic | 35.0% | |
| ATCTCTAAACATATCAGTCC+TGG | + | chr1_4:52374759-52374778 | None:intergenic | 35.0% | |
| AGGACTGATATGTTTAGAGA+TGG | - | chr1_4:52374758-52374777 | Msa0169230:intron | 35.0% | |
| GGACTGATATGTTTAGAGAT+GGG | - | chr1_4:52374759-52374778 | Msa0169230:intron | 35.0% | |
| ATACCATGACATATGACCTT+TGG | - | chr1_4:52374842-52374861 | Msa0169230:CDS | 35.0% | |
| AAACCAAAGGTCATATGTCA+TGG | + | chr1_4:52374848-52374867 | None:intergenic | 35.0% | |
| ACTTTCGAATGTACTTCCAT+TGG | - | chr1_4:52374871-52374890 | Msa0169230:intron | 35.0% | |
| CTTTCGAATGTACTTCCATT+GGG | - | chr1_4:52374872-52374891 | Msa0169230:intron | 35.0% | |
| !! | CTTCCATTGGGTTGATAATA+AGG | - | chr1_4:52374884-52374903 | Msa0169230:intron | 35.0% |
| ACTCCTTATTATCAACCCAA+TGG | + | chr1_4:52374890-52374909 | None:intergenic | 35.0% | |
| !! | GTTGATAATAAGGAGTCACT+GGG | - | chr1_4:52374894-52374913 | Msa0169230:intron | 35.0% |
| !!! | GGTAAGCTAGATTGTTTTTG+TGG | + | chr1_4:52374929-52374948 | None:intergenic | 35.0% |
| CAGAAATAATGACAGGATCA+TGG | + | chr1_4:52375007-52375026 | None:intergenic | 35.0% | |
| !! | ATGAAAATTAGAAGAGCACC+AGG | + | chr1_4:52375030-52375049 | None:intergenic | 35.0% |
| !!! | TCTGTAATTTTGCTGTTCAG+TGG | - | chr1_4:52375148-52375167 | Msa0169230:CDS | 35.0% |
| GCTGTTCAGTGGTATTATAT+AGG | - | chr1_4:52375159-52375178 | Msa0169230:CDS | 35.0% | |
| ATACAAGTAGAACAGGACAA+AGG | + | chr1_4:52375194-52375213 | None:intergenic | 35.0% | |
| GTTCATGATACAAGTAGAAC+AGG | + | chr1_4:52375201-52375220 | None:intergenic | 35.0% | |
| TATTCGATTGAGTAACACTC+CGG | - | chr1_4:52375233-52375252 | Msa0169230:intron | 35.0% | |
| TAGAGAACAACCAAACACAT+CGG | + | chr1_4:52375259-52375278 | None:intergenic | 35.0% | |
| GGTTGAGACTGAAAATAATC+TGG | - | chr1_4:52375294-52375313 | Msa0169230:intron | 35.0% | |
| CTGAAAATAATCTGGATGTC+TGG | - | chr1_4:52375302-52375321 | Msa0169230:intron | 35.0% | |
| ! | CTGACGATATAACATGGTTT+TGG | + | chr1_4:52375450-52375469 | None:intergenic | 35.0% |
| AGTACTCTGACGATATAACA+TGG | + | chr1_4:52375456-52375475 | None:intergenic | 35.0% | |
| !! | TCTTTTTGGTAGGAAAATGG+TGG | + | chr1_4:52375748-52375767 | None:intergenic | 35.0% |
| !! | AGCTTCTTTGTCTTTTTGGT+AGG | + | chr1_4:52375758-52375777 | None:intergenic | 35.0% |
| ! | GAGAAGCTTCTTTGTCTTTT+TGG | + | chr1_4:52375762-52375781 | None:intergenic | 35.0% |
| GATGAACTGAAACAATGGTT+TGG | - | chr1_4:52375789-52375808 | Msa0169230:CDS | 35.0% | |
| TGTGTAGAAACTAGAAAGCA+TGG | - | chr1_4:52375834-52375853 | Msa0169230:CDS | 35.0% | |
| ! | GTGTAGAAACTAGAAAGCAT+GGG | - | chr1_4:52375835-52375854 | Msa0169230:CDS | 35.0% |
| TGTCAAAGCACAAATGTTCT+TGG | - | chr1_4:52376118-52376137 | Msa0169230:five_prime_UTR | 35.0% | |
| AAAGCACAAATGTTCTTGGA+AGG | - | chr1_4:52376122-52376141 | Msa0169230:five_prime_UTR | 35.0% | |
| ACAAATGTTCTTGGAAGGAT+TGG | - | chr1_4:52376127-52376146 | Msa0169230:five_prime_UTR | 35.0% | |
| ! | AGCGCCAAATACACTTTTCT+AGG | - | chr1_4:52372148-52372167 | Msa0169230:three_prime_UTR | 40.0% |
| ! | GGTAAGATCTGAAATGCACA+TGG | + | chr1_4:52372214-52372233 | None:intergenic | 40.0% |
| !! | AAATGGTGATGGTGACAGAA+CGG | + | chr1_4:52372235-52372254 | None:intergenic | 40.0% |
| !! | TGGAAATGGATGTTTTGGGT+TGG | - | chr1_4:52372984-52373003 | Msa0169230:intron | 40.0% |
| !!! | GATGTTTTGGGTTGGTTGTA+GGG | - | chr1_4:52372992-52373011 | Msa0169230:intron | 40.0% |
| TGGTCTTTCTCTTCTCTTTC+TGG | + | chr1_4:52373031-52373050 | None:intergenic | 40.0% | |
| ! | TTATGGGCTATGGCTACTTT+AGG | - | chr1_4:52373068-52373087 | Msa0169230:intron | 40.0% |
| CCAGGGAAGAAGGAAAAAAA+CGG | + | chr1_4:52373208-52373227 | None:intergenic | 40.0% | |
| TTCAAAATCACCAGGGAAGA+AGG | + | chr1_4:52373218-52373237 | None:intergenic | 40.0% | |
| GTCGACATTTCAAAATCACC+AGG | + | chr1_4:52373226-52373245 | None:intergenic | 40.0% | |
| AATACAATCAATCAGAGGGG+AGG | + | chr1_4:52373276-52373295 | None:intergenic | 40.0% | |
| ACCTTAGACTATCTTGCCAA+TGG | - | chr1_4:52373308-52373327 | Msa0169230:intron | 40.0% | |
| TCCATTGGCAAGATAGTCTA+AGG | + | chr1_4:52373312-52373331 | None:intergenic | 40.0% | |
| CACAGATGTTAGCATTCCAT+TGG | + | chr1_4:52373327-52373346 | None:intergenic | 40.0% | |
| TATCACCCTATCAGAAACCA+TGG | + | chr1_4:52373352-52373371 | None:intergenic | 40.0% | |
| GGATCTGTTAGAAACAGTGA+TGG | - | chr1_4:52373377-52373396 | Msa0169230:intron | 40.0% | |
| !! | GTTAGAAACAGTGATGGATC+TGG | - | chr1_4:52373383-52373402 | Msa0169230:intron | 40.0% |
| !! | GTGACTTGTTGGTCAAAACA+AGG | - | chr1_4:52373489-52373508 | Msa0169230:intron | 40.0% |
| AGACAGAGAGATTGTTACCT+GGG | + | chr1_4:52373605-52373624 | None:intergenic | 40.0% | |
| TCACCGAACTCTTATCTGAT+TGG | - | chr1_4:52373826-52373845 | Msa0169230:intron | 40.0% | |
| TGGCCAATCAGATAAGAGTT+CGG | + | chr1_4:52373832-52373851 | None:intergenic | 40.0% | |
| ! | GTTTGAGATCGTGTATTTCC+TGG | - | chr1_4:52373975-52373994 | Msa0169230:intron | 40.0% |
| GTCGAGAAAAAAAAGTTCCC+TGG | + | chr1_4:52374070-52374089 | None:intergenic | 40.0% | |
| !!! | CGACCTCAAGATCTCTTTTT+TGG | - | chr1_4:52374086-52374105 | Msa0169230:intron | 40.0% |
| TGGCCAAAAAAGAGATCTTG+AGG | + | chr1_4:52374092-52374111 | None:intergenic | 40.0% | |
| TGAATGTTGTGGAGCAGAAT+GGG | + | chr1_4:52374149-52374168 | None:intergenic | 40.0% | |
| CAAACATTGGGTGAATGTTG+TGG | + | chr1_4:52374160-52374179 | None:intergenic | 40.0% | |
| TGCCGATACTCAAAACAGAA+TGG | + | chr1_4:52374231-52374250 | None:intergenic | 40.0% | |
| AACATGCCAAGAGTTACTCT+TGG | - | chr1_4:52374313-52374332 | Msa0169230:intron | 40.0% | |
| GTGAGAAGATTAGGGAAAAC+AGG | + | chr1_4:52374441-52374460 | None:intergenic | 40.0% | |
| GCAATATGGTACTATCCTTC+AGG | + | chr1_4:52374652-52374671 | None:intergenic | 40.0% | |
| !! | TATCTTTTGGGTCTGGTCTA+GGG | + | chr1_4:52374717-52374736 | None:intergenic | 40.0% |
| !! | ATGGTACTATCTTTTGGGTC+TGG | + | chr1_4:52374724-52374743 | None:intergenic | 40.0% |
| TACCATATTGGAATTCACCC+AGG | - | chr1_4:52374738-52374757 | Msa0169230:intron | 40.0% | |
| !! | GGTTGATAATAAGGAGTCAC+TGG | - | chr1_4:52374893-52374912 | Msa0169230:intron | 40.0% |
| !! | ATCCTGTCATTATTTCTGCC+TGG | - | chr1_4:52375009-52375028 | Msa0169230:intron | 40.0% |
| CTAAGTGTGACAAACAAGGT+GGG | + | chr1_4:52375101-52375120 | None:intergenic | 40.0% | |
| ACTAAGTGTGACAAACAAGG+TGG | + | chr1_4:52375102-52375121 | None:intergenic | 40.0% | |
| GGTACTAAGTGTGACAAACA+AGG | + | chr1_4:52375105-52375124 | None:intergenic | 40.0% | |
| GTGTTTGGTTGTTCTCTATC+TGG | - | chr1_4:52375261-52375280 | Msa0169230:intron | 40.0% | |
| TCTCTATCTGGCTAACTCTA+CGG | - | chr1_4:52375273-52375292 | Msa0169230:intron | 40.0% | |
| TGCAACACAATGAAAATGGC+AGG | + | chr1_4:52375719-52375738 | None:intergenic | 40.0% | |
| GAGGTGCAACACAATGAAAA+TGG | + | chr1_4:52375723-52375742 | None:intergenic | 40.0% | |
| TCTCATCATGACAAGTTGCA+TGG | + | chr1_4:52375970-52375989 | None:intergenic | 40.0% | |
| !!! | GTTTTAGGGTTTATGCGCCA+TGG | - | chr1_4:52372335-52372354 | Msa0169230:three_prime_UTR | 45.0% |
| !! | TGGCTTTCTTCGCATTGGTT+CGG | + | chr1_4:52372369-52372388 | None:intergenic | 45.0% |
| !!! | GGATGTTTTGGGTTGGTTGT+AGG | - | chr1_4:52372991-52373010 | Msa0169230:intron | 45.0% |
| CTTGCTAGGTACACCTTAAG+TGG | + | chr1_4:52373113-52373132 | None:intergenic | 45.0% | |
| CACTTAAGGTGTACCTAGCA+AGG | - | chr1_4:52373111-52373130 | Msa0169230:intron | 45.0% | |
| TTACCTCTCTGAACCTTGCT+AGG | + | chr1_4:52373127-52373146 | None:intergenic | 45.0% | |
| !!! | CCGTTTTTTTCCTTCTTCCC+TGG | - | chr1_4:52373205-52373224 | Msa0169230:intron | 45.0% |
| TCGACGGATATCACAGTTAG+AGG | - | chr1_4:52373241-52373260 | Msa0169230:intron | 45.0% | |
| ATGCTAACATCTGTGAGCCA+TGG | - | chr1_4:52373332-52373351 | Msa0169230:intron | 45.0% | |
| TGTGAGCCATGGTTTCTGAT+AGG | - | chr1_4:52373343-52373362 | Msa0169230:intron | 45.0% | |
| GTGAGCCATGGTTTCTGATA+GGG | - | chr1_4:52373344-52373363 | Msa0169230:intron | 45.0% | |
| GAGACAGAGAGATTGTTACC+TGG | + | chr1_4:52373606-52373625 | None:intergenic | 45.0% | |
| AGTCGAAATAGATTGGGGAC+AGG | - | chr1_4:52373791-52373810 | Msa0169230:intron | 45.0% | |
| ! | GAACTCTTATCTGATTGGCC+AGG | - | chr1_4:52373831-52373850 | Msa0169230:intron | 45.0% |
| ATATGGGAAGATGAGTACCC+AGG | + | chr1_4:52373996-52374015 | None:intergenic | 45.0% | |
| GAGATAAAAACCCTGCATGC+AGG | + | chr1_4:52374036-52374055 | None:intergenic | 45.0% | |
| GAATGTTGTGGAGCAGAATG+GGG | + | chr1_4:52374148-52374167 | None:intergenic | 45.0% | |
| GTGAATGTTGTGGAGCAGAA+TGG | + | chr1_4:52374150-52374169 | None:intergenic | 45.0% | |
| CCAACTCCAAGAGTAACTCT+TGG | + | chr1_4:52374322-52374341 | None:intergenic | 45.0% | |
| CCAAGAGTTACTCTTGGAGT+TGG | - | chr1_4:52374319-52374338 | Msa0169230:intron | 45.0% | |
| GTACTATCCTTCAGGCCTAA+AGG | + | chr1_4:52374644-52374663 | None:intergenic | 45.0% | |
| !! | ATCTTTTGGGTCTGGTCTAG+GGG | + | chr1_4:52374716-52374735 | None:intergenic | 45.0% |
| !! | CTATCTTTTGGGTCTGGTCT+AGG | + | chr1_4:52374718-52374737 | None:intergenic | 45.0% |
| GTCCTGGGTGAATTCCAATA+TGG | + | chr1_4:52374743-52374762 | None:intergenic | 45.0% | |
| GCATTTGCTCTCAAGCAACT+TGG | + | chr1_4:52374950-52374969 | None:intergenic | 45.0% | |
| GCTGAGTGGAGTTTAGTGAT+AGG | - | chr1_4:52374968-52374987 | Msa0169230:intron | 45.0% | |
| CACCAGGCAGAAATAATGAC+AGG | + | chr1_4:52375014-52375033 | None:intergenic | 45.0% | |
| ! | GAAGGCATAACCAGATGTTG+TGG | + | chr1_4:52375659-52375678 | None:intergenic | 45.0% |
| CACAATGAAAATGGCAGGTG+AGG | + | chr1_4:52375714-52375733 | None:intergenic | 45.0% | |
| ! | TGGTAGGAAAATGGTGGAAG+AGG | + | chr1_4:52375742-52375761 | None:intergenic | 45.0% |
| ! | TATCTTCCCTTTAGTGGGCA+AGG | + | chr1_4:52375920-52375939 | None:intergenic | 45.0% |
| !! | TAAAAAAATAAAAAATACTA+TGG | + | chr1_4:52372600-52372619 | None:intergenic | 5.0% |
| TCTCGTGGCTTTCTTCGCAT+TGG | + | chr1_4:52372374-52372393 | None:intergenic | 50.0% | |
| GTACCTAGCAAGGTTCAGAG+AGG | - | chr1_4:52373121-52373140 | Msa0169230:intron | 50.0% | |
| TCTGGTAGACGAGACCAAGT+TGG | - | chr1_4:52373401-52373420 | Msa0169230:intron | 50.0% | |
| TCCTCCAGGTCAAAATGCTC+AGG | - | chr1_4:52373427-52373446 | Msa0169230:intron | 50.0% | |
| !! | ACCTGAGCATTTTGACCTGG+AGG | + | chr1_4:52373431-52373450 | None:intergenic | 50.0% |
| !! | CACACCTGAGCATTTTGACC+TGG | + | chr1_4:52373434-52373453 | None:intergenic | 50.0% |
| AAAAACCCTGCATGCAGGAC+AGG | + | chr1_4:52374031-52374050 | None:intergenic | 50.0% | |
| TGCATTCTACTGGGTGCTCT+GGG | + | chr1_4:52374674-52374693 | None:intergenic | 50.0% | |
| ATGCATTCTACTGGGTGCTC+TGG | + | chr1_4:52374675-52374694 | None:intergenic | 50.0% | |
| ! | GTTTGAAGCCACCAATCACG+AGG | - | chr1_4:52374813-52374832 | Msa0169230:CDS | 50.0% |
| ATCTCTAGCCTCGTGATTGG+TGG | + | chr1_4:52374824-52374843 | None:intergenic | 50.0% | |
| GGTATCTCTAGCCTCGTGAT+TGG | + | chr1_4:52374827-52374846 | None:intergenic | 50.0% | |
| GCTTGAGAGCAAATGCTGAG+TGG | - | chr1_4:52374954-52374973 | Msa0169230:intron | 50.0% | |
| GAACAACCAAACACATCGGC+CGG | + | chr1_4:52375255-52375274 | None:intergenic | 50.0% | |
| TTAGCTGCCTTGCCCACTAA+AGG | - | chr1_4:52375910-52375929 | Msa0169230:intron | 50.0% | |
| TAGCTGCCTTGCCCACTAAA+GGG | - | chr1_4:52375911-52375930 | Msa0169230:intron | 50.0% | |
| !! | TTGGTTCGGTGCATCTGCCA+TGG | + | chr1_4:52372355-52372374 | None:intergenic | 55.0% |
| TGCGAAGAAAGCCACGAGAG+TGG | - | chr1_4:52372375-52372394 | Msa0169230:three_prime_UTR | 55.0% | |
| GAAGAAAGCCACGAGAGTGG+TGG | - | chr1_4:52372378-52372397 | Msa0169230:three_prime_UTR | 55.0% | |
| TCTGTTCACCACCACTCTCG+TGG | + | chr1_4:52372389-52372408 | None:intergenic | 55.0% | |
| GAAGCAGAAGAAGAGCCACG+TGG | + | chr1_4:52372414-52372433 | None:intergenic | 55.0% | |
| TGGAATTGGGTCTCACTCGC+TGG | + | chr1_4:52372574-52372593 | None:intergenic | 55.0% | |
| ! | GGTAGACGAGACCAAGTTGG+CGG | - | chr1_4:52373404-52373423 | Msa0169230:intron | 55.0% |
| ACTGTCCTGTCCTGCATGCA+GGG | - | chr1_4:52374023-52374042 | Msa0169230:intron | 55.0% | |
| TTGTGGAGCAGAATGGGGAC+TGG | + | chr1_4:52374143-52374162 | None:intergenic | 55.0% | |
| ! | ACTGGGTGCTCTGGGCAATA+TGG | + | chr1_4:52374666-52374685 | None:intergenic | 55.0% |
| AACACTCCGGCCGATGTGTT+TGG | - | chr1_4:52375246-52375265 | Msa0169230:intron | 55.0% | |
| GCAGGTGCATCCACAACATC+TGG | - | chr1_4:52375646-52375665 | Msa0169230:intron | 55.0% | |
| GGTGGTGAACAGAGTCCACG+TGG | - | chr1_4:52372396-52372415 | Msa0169230:three_prime_UTR | 60.0% | |
| CACTGTCCTGTCCTGCATGC+AGG | - | chr1_4:52374022-52374041 | Msa0169230:intron | 60.0% | |
| ! | GGGACTGGTGGGGATGAGTT+TGG | + | chr1_4:52374128-52374147 | None:intergenic | 60.0% |
| ! | GAGCAGAATGGGGACTGGTG+GGG | + | chr1_4:52374138-52374157 | None:intergenic | 60.0% |
| ! | GGAGCAGAATGGGGACTGGT+GGG | + | chr1_4:52374139-52374158 | None:intergenic | 60.0% |
| TGGAGCAGAATGGGGACTGG+TGG | + | chr1_4:52374140-52374159 | None:intergenic | 60.0% | |
| ! | GACCAAGTTGGCGGTCCTCC+AGG | - | chr1_4:52373413-52373432 | Msa0169230:intron | 65.0% |
| GACCTGGAGGACCGCCAACT+TGG | + | chr1_4:52373418-52373437 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 52372093 | 52376151 | 52372093 | ID=Msa0169230;Name=Msa0169230 |
| chr1_4 | mRNA | 52372093 | 52376151 | 52372093 | ID=Msa0169230-mRNA-1;Parent=Msa0169230;Name=Msa0169230-mRNA-1;_AED=0.07;_eAED=0.07;_QI=95|0.8|0.83|1|0.8|0.66|6|454|174 |
| chr1_4 | exon | 52372093 | 52372594 | 52372093 | ID=Msa0169230-mRNA-1:exon:15495;Parent=Msa0169230-mRNA-1 |
| chr1_4 | exon | 52374638 | 52374676 | 52374638 | ID=Msa0169230-mRNA-1:exon:15494;Parent=Msa0169230-mRNA-1 |
| chr1_4 | exon | 52374796 | 52374879 | 52374796 | ID=Msa0169230-mRNA-1:exon:15493;Parent=Msa0169230-mRNA-1 |
| chr1_4 | exon | 52375102 | 52375231 | 52375102 | ID=Msa0169230-mRNA-1:exon:15492;Parent=Msa0169230-mRNA-1 |
| chr1_4 | exon | 52375667 | 52375908 | 52375667 | ID=Msa0169230-mRNA-1:exon:15491;Parent=Msa0169230-mRNA-1 |
| chr1_4 | exon | 52376075 | 52376151 | 52376075 | ID=Msa0169230-mRNA-1:exon:15490;Parent=Msa0169230-mRNA-1 |
| chr1_4 | five_prime_UTR | 52376075 | 52376151 | 52376075 | ID=Msa0169230-mRNA-1:five_prime_utr;Parent=Msa0169230-mRNA-1 |
| chr1_4 | five_prime_UTR | 52375891 | 52375908 | 52375891 | ID=Msa0169230-mRNA-1:five_prime_utr;Parent=Msa0169230-mRNA-1 |
| chr1_4 | CDS | 52375667 | 52375890 | 52375667 | ID=Msa0169230-mRNA-1:cds;Parent=Msa0169230-mRNA-1 |
| chr1_4 | CDS | 52375102 | 52375231 | 52375102 | ID=Msa0169230-mRNA-1:cds;Parent=Msa0169230-mRNA-1 |
| chr1_4 | CDS | 52374796 | 52374879 | 52374796 | ID=Msa0169230-mRNA-1:cds;Parent=Msa0169230-mRNA-1 |
| chr1_4 | CDS | 52374638 | 52374676 | 52374638 | ID=Msa0169230-mRNA-1:cds;Parent=Msa0169230-mRNA-1 |
| chr1_4 | CDS | 52372547 | 52372594 | 52372547 | ID=Msa0169230-mRNA-1:cds;Parent=Msa0169230-mRNA-1 |
| chr1_4 | three_prime_UTR | 52372093 | 52372546 | 52372093 | ID=Msa0169230-mRNA-1:three_prime_utr;Parent=Msa0169230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
