AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1362790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1362790 MtrunA17_Chr7g0241891 100.000 116 0 0 1 116 82 197 3.94e-82 238
Msa1362790 MtrunA17_Chr3g0077371 100.000 116 0 0 1 116 82 197 4.79e-82 238
Msa1362790 MtrunA17_Chr3g0077391 100.000 116 0 0 1 116 82 197 4.79e-82 238
Msa1362790 MtrunA17_Chr4g0009481 100.000 116 0 0 1 116 82 197 4.79e-82 238
Msa1362790 MtrunA17_Chr1g0182531 99.138 116 1 0 1 116 109 224 3.00e-81 237
Msa1362790 MtrunA17_Chr4g0009501 100.000 60 0 0 57 116 13 72 6.10e-39 125
Msa1362790 MtrunA17_Chr4g0060551 94.118 34 2 0 1 34 82 115 1.01e-15 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1362790 AT5G39850.1 88.679 106 12 0 1 106 82 187 1.28e-65 197
Msa1362790 AT5G15200.1 81.197 117 21 1 1 116 82 198 6.91e-62 187
Msa1362790 AT5G15200.2 89.286 56 6 0 1 56 82 137 1.63e-30 107

Find 47 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACACACAGCATCAAGTAAA+AGG 0.265429 tig0017916:-1863 None:intergenic
AATAAACAAGGATGGGAAAA+TGG 0.279207 tig0017916:-1739 None:intergenic
TGATCCAACTATGCTTCTTA+TGG 0.287832 tig0017916:+1954 Msa1362790:three_prime_UTR
CCTTTCGGTGGTGGTCTTCC+TGG 0.299249 tig0017916:+1549 Msa1362790:CDS
ATCACCACCGGAAGCCTTCT+TGG 0.302286 tig0017916:-1604 None:intergenic
ACATCCCATCCTTCATGGTT+AGG 0.353382 tig0017916:+1487 Msa1362790:CDS
CCTTCTTGGCTGCAGCCTTA+AGG 0.354248 tig0017916:-1590 None:intergenic
CAAAGTTTCGGTTGGATACA+TGG 0.398736 tig0017916:-1933 None:intergenic
GCATAGTTGGATCAAAGTTT+CGG 0.405107 tig0017916:-1945 None:intergenic
TGATCTTTATACAAGTTAGT+TGG 0.405273 tig0017916:+2038 Msa1362790:three_prime_UTR
ACAAAGATCATCAAATGTAT+TGG 0.418707 tig0017916:-1830 None:intergenic
GTTTCATAGGGTTGGGAGGC+AGG 0.422860 tig0017916:+1458 Msa1362790:intron
CATCCCATCCTTCATGGTTA+GGG 0.434949 tig0017916:+1488 Msa1362790:CDS
GCTGCAGCCAAGAAGGCTTC+CGG 0.439232 tig0017916:+1597 Msa1362790:CDS
TTGGATCAAAACTTAATACT+TGG 0.442599 tig0017916:-1811 None:intergenic
CTCACAAGTCCTTTCGGTGG+TGG 0.464545 tig0017916:+1540 Msa1362790:CDS
AGTGAACATCCCATCCTTCA+TGG 0.479160 tig0017916:+1482 Msa1362790:CDS
TTCTTTCGCTTCACACGACC+AGG 0.480028 tig0017916:-1567 None:intergenic
TACACCATAAGAAGCATAGT+TGG 0.501489 tig0017916:-1958 None:intergenic
AGTTGGATCAAAGTTTCGGT+TGG 0.502951 tig0017916:-1941 None:intergenic
AGTCTAGGACAGATATAAAA+CGG 0.515542 tig0017916:-1686 None:intergenic
CCTTAAGGCTGCAGCCAAGA+AGG 0.517095 tig0017916:+1590 Msa1362790:CDS
CCATCCTTGTTTATTGTGTG+AGG 0.520499 tig0017916:+1747 Msa1362790:three_prime_UTR
AAGAAGGCTTCCGGTGGTGA+TGG 0.531981 tig0017916:+1606 Msa1362790:CDS
TCATTTGTGATTAAAATGTC+AGG 0.535564 tig0017916:-2089 None:intergenic
CTCCTCATCACCATCACCAC+CGG 0.544543 tig0017916:-1616 None:intergenic
TCAACCCTAACCATGAAGGA+TGG 0.545370 tig0017916:-1492 None:intergenic
CCTCACACAATAAACAAGGA+TGG 0.552644 tig0017916:-1747 None:intergenic
TGTGAAGCGAAAGAACCTTA+AGG 0.553464 tig0017916:+1575 Msa1362790:CDS
TGATAGAAAATCTAAAGTCT+AGG 0.553926 tig0017916:-1701 None:intergenic
CTCACACAATAAACAAGGAT+GGG 0.565131 tig0017916:-1746 None:intergenic
ATATCAGTTCTGAAAGGCAC+AGG 0.567178 tig0017916:-1988 None:intergenic
AACTATGCTTCTTATGGTGT+AGG 0.569156 tig0017916:+1960 Msa1362790:three_prime_UTR
TGAATCAACCCTAACCATGA+AGG 0.569890 tig0017916:-1496 None:intergenic
CAACCCTAACCATGAAGGAT+GGG 0.574613 tig0017916:-1491 None:intergenic
TATTGTTTCATAGGGTTGGG+AGG 0.586042 tig0017916:+1454 Msa1362790:intron
TTCCGGTGGTGATGGTGATG+AGG 0.588312 tig0017916:+1614 Msa1362790:CDS
GATATAAAACGGCTAGAGCA+AGG 0.589602 tig0017916:-1675 None:intergenic
AAAGTTTCGGTTGGATACAT+GGG 0.591867 tig0017916:-1932 None:intergenic
TCACAAATATCAGTTCTGAA+AGG 0.596231 tig0017916:-1994 None:intergenic
TCACTCACAAGTCCTTTCGG+TGG 0.620110 tig0017916:+1537 Msa1362790:CDS
GCAGCCAAGAAGGCTTCCGG+TGG 0.625260 tig0017916:+1600 Msa1362790:CDS
AACTTGTATAAAGATCAAGC+AGG 0.637230 tig0017916:-2032 None:intergenic
CCAGGAAGACCACCACCGAA+AGG 0.644057 tig0017916:-1549 None:intergenic
CGGTGGTGATGGTGATGAGG+AGG 0.644753 tig0017916:+1617 Msa1362790:CDS
ATTTCCTCACACAATAAACA+AGG 0.669010 tig0017916:-1751 None:intergenic
TTTGTGATTAAAATGTCAGG+TGG 0.686722 tig0017916:-2086 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAATTCAATGTAATTAT+AGG - tig0017916:606-625 None:intergenic 10.0%
!! AAAAAAAAAGGATAAAATTA+GGG - tig0017916:1380-1399 None:intergenic 10.0%
!! AAAAAAAAAAGGATAAAATT+AGG - tig0017916:1381-1400 None:intergenic 10.0%
!! AAATAATTCAATGTAATTAT+AGG - tig0017916:606-625 None:intergenic 10.0%
!! AAAAAAAAAGGATAAAATTA+GGG - tig0017916:1380-1399 None:intergenic 10.0%
!! AAAAAAAAAAGGATAAAATT+AGG - tig0017916:1381-1400 None:intergenic 10.0%
!!! GAATTAATCTGATTTTTTTA+TGG + tig0017916:337-356 Msa1362790:intron 15.0%
!!! TTTTTTTTTTTTTGAACTCT+CGG - tig0017916:989-1008 None:intergenic 15.0%
!! AAATAGAAAGGAAAAAAAAA+AGG - tig0017916:1392-1411 None:intergenic 15.0%
!! TTCATTAATACTAAATAGAA+AGG - tig0017916:1404-1423 None:intergenic 15.0%
!! TAGTATTAATGAAATATGTT+TGG + tig0017916:1411-1430 Msa1362790:intron 15.0%
!!! GAATTAATCTGATTTTTTTA+TGG + tig0017916:337-356 Msa1362790:intron 15.0%
!!! TTTTTTTTTTTTTGAACTCT+CGG - tig0017916:989-1008 None:intergenic 15.0%
!! AAATAGAAAGGAAAAAAAAA+AGG - tig0017916:1392-1411 None:intergenic 15.0%
!! TTCATTAATACTAAATAGAA+AGG - tig0017916:1404-1423 None:intergenic 15.0%
!! TAGTATTAATGAAATATGTT+TGG + tig0017916:1411-1430 Msa1362790:intron 15.0%
!! TCAGATTAATTCATCATTAA+CGG - tig0017916:329-348 None:intergenic 20.0%
!!! ATGTTTTTCAAAATGATACA+GGG - tig0017916:826-845 None:intergenic 20.0%
!!! AATGTTTTTCAAAATGATAC+AGG - tig0017916:827-846 None:intergenic 20.0%
!! GAGAGTTCAAAAAAAAAAAA+AGG + tig0017916:988-1007 Msa1362790:intron 20.0%
!! CAAAACATGTATTGAATTAA+AGG - tig0017916:1064-1083 None:intergenic 20.0%
!! GCAAATGAAAAATATAATTG+AGG - tig0017916:1342-1361 None:intergenic 20.0%
!! TAATGAAATATGTTTGGATA+TGG + tig0017916:1417-1436 Msa1362790:intron 20.0%
!!! AATGTCATTTATTGTTTCAT+AGG + tig0017916:1445-1464 Msa1362790:intron 20.0%
!!! ATGTCATTTATTGTTTCATA+GGG + tig0017916:1446-1465 Msa1362790:intron 20.0%
!!! TTTGATATTGCATATTTTGA+TGG + tig0017916:1905-1924 Msa1362790:three_prime_UTR 20.0%
!! TCAGATTAATTCATCATTAA+CGG - tig0017916:329-348 None:intergenic 20.0%
!!! ATGTTTTTCAAAATGATACA+GGG - tig0017916:826-845 None:intergenic 20.0%
!!! AATGTTTTTCAAAATGATAC+AGG - tig0017916:827-846 None:intergenic 20.0%
!! GAGAGTTCAAAAAAAAAAAA+AGG + tig0017916:988-1007 Msa1362790:intron 20.0%
!! CAAAACATGTATTGAATTAA+AGG - tig0017916:1064-1083 None:intergenic 20.0%
!! GCAAATGAAAAATATAATTG+AGG - tig0017916:1342-1361 None:intergenic 20.0%
!! TAATGAAATATGTTTGGATA+TGG + tig0017916:1417-1436 Msa1362790:intron 20.0%
!!! AATGTCATTTATTGTTTCAT+AGG + tig0017916:1445-1464 Msa1362790:intron 20.0%
!!! ATGTCATTTATTGTTTCATA+GGG + tig0017916:1446-1465 Msa1362790:intron 20.0%
!!! TTTGATATTGCATATTTTGA+TGG + tig0017916:1905-1924 Msa1362790:three_prime_UTR 20.0%
!! CTATAAAGAAAATTAGCTTG+TGG - tig0017916:519-538 None:intergenic 25.0%
! GGCTTATTTGAACATATATT+TGG - tig0017916:791-810 None:intergenic 25.0%
!! AAAAGGAAAGTATATCTAGA+AGG + tig0017916:1005-1024 Msa1362790:intron 25.0%
! ATTTATTGTTTCATAGGGTT+GGG + tig0017916:1451-1470 Msa1362790:intron 25.0%
!! TGATAGAAAATCTAAAGTCT+AGG - tig0017916:1704-1723 None:intergenic 25.0%
! TTGGATCAAAACTTAATACT+TGG - tig0017916:1814-1833 None:intergenic 25.0%
! ACAAAGATCATCAAATGTAT+TGG - tig0017916:1833-1852 None:intergenic 25.0%
! TGATCTTTATACAAGTTAGT+TGG + tig0017916:2038-2057 Msa1362790:three_prime_UTR 25.0%
! TCATTTGTGATTAAAATGTC+AGG - tig0017916:2092-2111 None:intergenic 25.0%
!! CTATAAAGAAAATTAGCTTG+TGG - tig0017916:519-538 None:intergenic 25.0%
! GGCTTATTTGAACATATATT+TGG - tig0017916:791-810 None:intergenic 25.0%
!! AAAAGGAAAGTATATCTAGA+AGG + tig0017916:1005-1024 Msa1362790:intron 25.0%
! ATTTATTGTTTCATAGGGTT+GGG + tig0017916:1451-1470 Msa1362790:intron 25.0%
!! TGATAGAAAATCTAAAGTCT+AGG - tig0017916:1704-1723 None:intergenic 25.0%
! TTGGATCAAAACTTAATACT+TGG - tig0017916:1814-1833 None:intergenic 25.0%
! ACAAAGATCATCAAATGTAT+TGG - tig0017916:1833-1852 None:intergenic 25.0%
! TGATCTTTATACAAGTTAGT+TGG + tig0017916:2038-2057 Msa1362790:three_prime_UTR 25.0%
! TCATTTGTGATTAAAATGTC+AGG - tig0017916:2092-2111 None:intergenic 25.0%
! TGCTGATCTATTTGTTAGTT+TGG + tig0017916:383-402 Msa1362790:intron 30.0%
AGTGCGAAAGCAATTATAAT+AGG - tig0017916:450-469 None:intergenic 30.0%
!!! TTTTTTTTTTGAACTCTCGG+AGG - tig0017916:986-1005 None:intergenic 30.0%
! ATATCTAGAAGGAAGTATAC+AGG + tig0017916:1016-1035 Msa1362790:intron 30.0%
AAAGAGTTACAAGCAGTTAT+GGG - tig0017916:1097-1116 None:intergenic 30.0%
! TTTACTTGCATCTTTTGTAG+TGG + tig0017916:1118-1137 Msa1362790:intron 30.0%
AAGTAGAGATCATCAAGTAA+TGG + tig0017916:1189-1208 Msa1362790:intron 30.0%
ACACTAACAAGTATAGTGTT+AGG - tig0017916:1264-1283 None:intergenic 30.0%
TCTATTTACTTACCTCTGAA+TGG + tig0017916:1314-1333 Msa1362790:intron 30.0%
!! TTTCATTTGCTGTATGCTTA+TGG + tig0017916:1352-1371 Msa1362790:intron 30.0%
!! TTCATTTGCTGTATGCTTAT+GGG + tig0017916:1353-1372 Msa1362790:intron 30.0%
CATTTATTGTTTCATAGGGT+TGG + tig0017916:1450-1469 Msa1362790:intron 30.0%
! AGTCTAGGACAGATATAAAA+CGG - tig0017916:1689-1708 None:intergenic 30.0%
AATAAACAAGGATGGGAAAA+TGG - tig0017916:1742-1761 None:intergenic 30.0%
ATTTCCTCACACAATAAACA+AGG - tig0017916:1754-1773 None:intergenic 30.0%
!! TCACAAATATCAGTTCTGAA+AGG - tig0017916:1997-2016 None:intergenic 30.0%
AACTTGTATAAAGATCAAGC+AGG - tig0017916:2035-2054 None:intergenic 30.0%
TTTGTGATTAAAATGTCAGG+TGG - tig0017916:2089-2108 None:intergenic 30.0%
! TGCTGATCTATTTGTTAGTT+TGG + tig0017916:383-402 Msa1362790:intron 30.0%
AGTGCGAAAGCAATTATAAT+AGG - tig0017916:450-469 None:intergenic 30.0%
!!! TTTTTTTTTTGAACTCTCGG+AGG - tig0017916:986-1005 None:intergenic 30.0%
! ATATCTAGAAGGAAGTATAC+AGG + tig0017916:1016-1035 Msa1362790:intron 30.0%
AAAGAGTTACAAGCAGTTAT+GGG - tig0017916:1097-1116 None:intergenic 30.0%
! TTTACTTGCATCTTTTGTAG+TGG + tig0017916:1118-1137 Msa1362790:intron 30.0%
AAGTAGAGATCATCAAGTAA+TGG + tig0017916:1189-1208 Msa1362790:intron 30.0%
ACACTAACAAGTATAGTGTT+AGG - tig0017916:1264-1283 None:intergenic 30.0%
TCTATTTACTTACCTCTGAA+TGG + tig0017916:1314-1333 Msa1362790:intron 30.0%
!! TTTCATTTGCTGTATGCTTA+TGG + tig0017916:1352-1371 Msa1362790:intron 30.0%
!! TTCATTTGCTGTATGCTTAT+GGG + tig0017916:1353-1372 Msa1362790:intron 30.0%
CATTTATTGTTTCATAGGGT+TGG + tig0017916:1450-1469 Msa1362790:intron 30.0%
! AGTCTAGGACAGATATAAAA+CGG - tig0017916:1689-1708 None:intergenic 30.0%
AATAAACAAGGATGGGAAAA+TGG - tig0017916:1742-1761 None:intergenic 30.0%
ATTTCCTCACACAATAAACA+AGG - tig0017916:1754-1773 None:intergenic 30.0%
!! TCACAAATATCAGTTCTGAA+AGG - tig0017916:1997-2016 None:intergenic 30.0%
AACTTGTATAAAGATCAAGC+AGG - tig0017916:2035-2054 None:intergenic 30.0%
TTTGTGATTAAAATGTCAGG+TGG - tig0017916:2089-2108 None:intergenic 30.0%
TTCTAGCATTGTTACGGATA+CGG - tig0017916:32-51 None:intergenic 35.0%
! AAAGCGTTCTAGCATTGTTA+CGG - tig0017916:38-57 None:intergenic 35.0%
TATAATTGCTTTCGCACTGT+TGG + tig0017916:452-471 Msa1362790:intron 35.0%
AATAAGCTGCTTATCCAATC+AGG - tig0017916:479-498 None:intergenic 35.0%
TATGAAGTACGAAATCTCCT+CGG + tig0017916:544-563 Msa1362790:intron 35.0%
!! TATAGGTTTAGTGTCGATGT+CGG - tig0017916:589-608 None:intergenic 35.0%
TCAAATAAGCCAATCCAAAC+AGG + tig0017916:800-819 Msa1362790:intron 35.0%
TTGTTGTGTGATGTAGATCT+TGG + tig0017916:877-896 Msa1362790:intron 35.0%
GTAGATCTTGGTTAGATCAT+TGG + tig0017916:889-908 Msa1362790:intron 35.0%
TTGGTTGTCTGTAACAATGT+TGG + tig0017916:908-927 Msa1362790:intron 35.0%
TGGTTGTCTGTAACAATGTT+GGG + tig0017916:909-928 Msa1362790:intron 35.0%
AAGAGTTACAAGCAGTTATG+GGG - tig0017916:1096-1115 None:intergenic 35.0%
GAAAGAGTTACAAGCAGTTA+TGG - tig0017916:1098-1117 None:intergenic 35.0%
TAGAGATCATCAAGTAATGG+AGG + tig0017916:1192-1211 Msa1362790:intron 35.0%
AATTACACATTTCCGAACCA+TGG - tig0017916:1227-1246 None:intergenic 35.0%
ATAATTGAGGATCCATTCAG+AGG - tig0017916:1329-1348 None:intergenic 35.0%
! TTTTCACTCACAAGTCCTTT+CGG + tig0017916:1534-1553 Msa1362790:CDS 35.0%
CTCACACAATAAACAAGGAT+GGG - tig0017916:1749-1768 None:intergenic 35.0%
TACACACAGCATCAAGTAAA+AGG - tig0017916:1866-1885 None:intergenic 35.0%
AAAGTTTCGGTTGGATACAT+GGG - tig0017916:1935-1954 None:intergenic 35.0%
GCATAGTTGGATCAAAGTTT+CGG - tig0017916:1948-1967 None:intergenic 35.0%
TGATCCAACTATGCTTCTTA+TGG + tig0017916:1954-1973 Msa1362790:three_prime_UTR 35.0%
! TACACCATAAGAAGCATAGT+TGG - tig0017916:1961-1980 None:intergenic 35.0%
AACTATGCTTCTTATGGTGT+AGG + tig0017916:1960-1979 Msa1362790:three_prime_UTR 35.0%
TTCTAGCATTGTTACGGATA+CGG - tig0017916:32-51 None:intergenic 35.0%
! AAAGCGTTCTAGCATTGTTA+CGG - tig0017916:38-57 None:intergenic 35.0%
TATAATTGCTTTCGCACTGT+TGG + tig0017916:452-471 Msa1362790:intron 35.0%
AATAAGCTGCTTATCCAATC+AGG - tig0017916:479-498 None:intergenic 35.0%
TATGAAGTACGAAATCTCCT+CGG + tig0017916:544-563 Msa1362790:intron 35.0%
!! TATAGGTTTAGTGTCGATGT+CGG - tig0017916:589-608 None:intergenic 35.0%
TCAAATAAGCCAATCCAAAC+AGG + tig0017916:800-819 Msa1362790:intron 35.0%
TTGTTGTGTGATGTAGATCT+TGG + tig0017916:877-896 Msa1362790:intron 35.0%
GTAGATCTTGGTTAGATCAT+TGG + tig0017916:889-908 Msa1362790:intron 35.0%
TTGGTTGTCTGTAACAATGT+TGG + tig0017916:908-927 Msa1362790:intron 35.0%
TGGTTGTCTGTAACAATGTT+GGG + tig0017916:909-928 Msa1362790:intron 35.0%
AAGAGTTACAAGCAGTTATG+GGG - tig0017916:1096-1115 None:intergenic 35.0%
GAAAGAGTTACAAGCAGTTA+TGG - tig0017916:1098-1117 None:intergenic 35.0%
TAGAGATCATCAAGTAATGG+AGG + tig0017916:1192-1211 Msa1362790:intron 35.0%
AATTACACATTTCCGAACCA+TGG - tig0017916:1227-1246 None:intergenic 35.0%
ATAATTGAGGATCCATTCAG+AGG - tig0017916:1329-1348 None:intergenic 35.0%
! TTTTCACTCACAAGTCCTTT+CGG + tig0017916:1534-1553 Msa1362790:CDS 35.0%
CTCACACAATAAACAAGGAT+GGG - tig0017916:1749-1768 None:intergenic 35.0%
TACACACAGCATCAAGTAAA+AGG - tig0017916:1866-1885 None:intergenic 35.0%
AAAGTTTCGGTTGGATACAT+GGG - tig0017916:1935-1954 None:intergenic 35.0%
GCATAGTTGGATCAAAGTTT+CGG - tig0017916:1948-1967 None:intergenic 35.0%
TGATCCAACTATGCTTCTTA+TGG + tig0017916:1954-1973 Msa1362790:three_prime_UTR 35.0%
! TACACCATAAGAAGCATAGT+TGG - tig0017916:1961-1980 None:intergenic 35.0%
AACTATGCTTCTTATGGTGT+AGG + tig0017916:1960-1979 Msa1362790:three_prime_UTR 35.0%
TTGAGGAGGATGTTTAAGCA+TGG + tig0017916:108-127 Msa1362790:exon 40.0%
TGTTCTGTGTCTCATCTAGA+AGG - tig0017916:134-153 None:intergenic 40.0%
GAACAAGCTCGATTATGTGT+TGG + tig0017916:149-168 Msa1362790:CDS 40.0%
TAAGTCCATTCACCATGCTA+GGG + tig0017916:236-255 Msa1362790:CDS 40.0%
TTATGTGTCCAGTGTAGTGT+CGG + tig0017916:641-660 Msa1362790:intron 40.0%
AAAATGATACAGGGCCTGTT+TGG - tig0017916:817-836 None:intergenic 40.0%
ACATTTCCGAACCATGGTAA+AGG - tig0017916:1221-1240 None:intergenic 40.0%
TATTGTTTCATAGGGTTGGG+AGG + tig0017916:1454-1473 Msa1362790:intron 40.0%
TGAATCAACCCTAACCATGA+AGG - tig0017916:1499-1518 None:intergenic 40.0%
TGTGAAGCGAAAGAACCTTA+AGG + tig0017916:1575-1594 Msa1362790:CDS 40.0%
GATATAAAACGGCTAGAGCA+AGG - tig0017916:1678-1697 None:intergenic 40.0%
CCTCACACAATAAACAAGGA+TGG - tig0017916:1750-1769 None:intergenic 40.0%
! CCATCCTTGTTTATTGTGTG+AGG + tig0017916:1747-1766 Msa1362790:three_prime_UTR 40.0%
CAAAGTTTCGGTTGGATACA+TGG - tig0017916:1936-1955 None:intergenic 40.0%
AGTTGGATCAAAGTTTCGGT+TGG - tig0017916:1944-1963 None:intergenic 40.0%
!! ATATCAGTTCTGAAAGGCAC+AGG - tig0017916:1991-2010 None:intergenic 40.0%
TTGAGGAGGATGTTTAAGCA+TGG + tig0017916:108-127 Msa1362790:exon 40.0%
TGTTCTGTGTCTCATCTAGA+AGG - tig0017916:134-153 None:intergenic 40.0%
GAACAAGCTCGATTATGTGT+TGG + tig0017916:149-168 Msa1362790:CDS 40.0%
TAAGTCCATTCACCATGCTA+GGG + tig0017916:236-255 Msa1362790:CDS 40.0%
TTATGTGTCCAGTGTAGTGT+CGG + tig0017916:641-660 Msa1362790:intron 40.0%
AAAATGATACAGGGCCTGTT+TGG - tig0017916:817-836 None:intergenic 40.0%
ACATTTCCGAACCATGGTAA+AGG - tig0017916:1221-1240 None:intergenic 40.0%
TATTGTTTCATAGGGTTGGG+AGG + tig0017916:1454-1473 Msa1362790:intron 40.0%
TGAATCAACCCTAACCATGA+AGG - tig0017916:1499-1518 None:intergenic 40.0%
TGTGAAGCGAAAGAACCTTA+AGG + tig0017916:1575-1594 Msa1362790:CDS 40.0%
GATATAAAACGGCTAGAGCA+AGG - tig0017916:1678-1697 None:intergenic 40.0%
CCTCACACAATAAACAAGGA+TGG - tig0017916:1750-1769 None:intergenic 40.0%
! CCATCCTTGTTTATTGTGTG+AGG + tig0017916:1747-1766 Msa1362790:three_prime_UTR 40.0%
CAAAGTTTCGGTTGGATACA+TGG - tig0017916:1936-1955 None:intergenic 40.0%
AGTTGGATCAAAGTTTCGGT+TGG - tig0017916:1944-1963 None:intergenic 40.0%
!! ATATCAGTTCTGAAAGGCAC+AGG - tig0017916:1991-2010 None:intergenic 40.0%
! TGCTAGAACGCTTTTGACAC+TGG + tig0017916:44-63 Msa1362790:five_prime_UTR 45.0%
TGGATGAGAAGAATCCTCGT+CGG + tig0017916:64-83 Msa1362790:five_prime_UTR 45.0%
CAGACACTCGTGTTCAAATC+TGG + tig0017916:207-226 Msa1362790:CDS 45.0%
ACTCGTGTTCAAATCTGGCA+TGG + tig0017916:212-231 Msa1362790:CDS 45.0%
CTAAGTCCATTCACCATGCT+AGG + tig0017916:235-254 Msa1362790:CDS 45.0%
AAGAACCCTAGCATGGTGAA+TGG - tig0017916:244-263 None:intergenic 45.0%
ACCATGCTAGGGTTCTTATC+AGG + tig0017916:247-266 Msa1362790:CDS 45.0%
GTACGAAATCTCCTCGGATT+AGG + tig0017916:550-569 Msa1362790:intron 45.0%
!! TAGTGTCGGTGCTTCATAGA+TGG + tig0017916:655-674 Msa1362790:intron 45.0%
AATGGAGGTCTCCTTTACCA+TGG + tig0017916:1207-1226 Msa1362790:intron 45.0%
AGGTCTCCTTTACCATGGTT+CGG + tig0017916:1212-1231 Msa1362790:intron 45.0%
AGTGAACATCCCATCCTTCA+TGG + tig0017916:1482-1501 Msa1362790:CDS 45.0%
ACATCCCATCCTTCATGGTT+AGG + tig0017916:1487-1506 Msa1362790:CDS 45.0%
CATCCCATCCTTCATGGTTA+GGG + tig0017916:1488-1507 Msa1362790:CDS 45.0%
CAACCCTAACCATGAAGGAT+GGG - tig0017916:1494-1513 None:intergenic 45.0%
TCAACCCTAACCATGAAGGA+TGG - tig0017916:1495-1514 None:intergenic 45.0%
! TGCTAGAACGCTTTTGACAC+TGG + tig0017916:44-63 Msa1362790:five_prime_UTR 45.0%
TGGATGAGAAGAATCCTCGT+CGG + tig0017916:64-83 Msa1362790:five_prime_UTR 45.0%
CAGACACTCGTGTTCAAATC+TGG + tig0017916:207-226 Msa1362790:CDS 45.0%
ACTCGTGTTCAAATCTGGCA+TGG + tig0017916:212-231 Msa1362790:CDS 45.0%
CTAAGTCCATTCACCATGCT+AGG + tig0017916:235-254 Msa1362790:CDS 45.0%
AAGAACCCTAGCATGGTGAA+TGG - tig0017916:244-263 None:intergenic 45.0%
ACCATGCTAGGGTTCTTATC+AGG + tig0017916:247-266 Msa1362790:CDS 45.0%
GTACGAAATCTCCTCGGATT+AGG + tig0017916:550-569 Msa1362790:intron 45.0%
!! TAGTGTCGGTGCTTCATAGA+TGG + tig0017916:655-674 Msa1362790:intron 45.0%
AATGGAGGTCTCCTTTACCA+TGG + tig0017916:1207-1226 Msa1362790:intron 45.0%
AGGTCTCCTTTACCATGGTT+CGG + tig0017916:1212-1231 Msa1362790:intron 45.0%
AGTGAACATCCCATCCTTCA+TGG + tig0017916:1482-1501 Msa1362790:CDS 45.0%
ACATCCCATCCTTCATGGTT+AGG + tig0017916:1487-1506 Msa1362790:CDS 45.0%
CATCCCATCCTTCATGGTTA+GGG + tig0017916:1488-1507 Msa1362790:CDS 45.0%
CAACCCTAACCATGAAGGAT+GGG - tig0017916:1494-1513 None:intergenic 45.0%
TCAACCCTAACCATGAAGGA+TGG - tig0017916:1495-1514 None:intergenic 45.0%
AATCCTCGTCGGATCTTCGA+GGG + tig0017916:75-94 Msa1362790:five_prime_UTR 50.0%
! TCGAGGGTGAAGCTCTTTTG+AGG + tig0017916:91-110 Msa1362790:five_prime_UTR 50.0%
!! AGGGTGAAGCTCTTTTGAGG+AGG + tig0017916:94-113 Msa1362790:five_prime_UTR 50.0%
GCCTGATAAGAACCCTAGCA+TGG - tig0017916:251-270 None:intergenic 50.0%
CTAGGGTTCTTATCAGGCAG+AGG + tig0017916:253-272 Msa1362790:CDS 50.0%
! TTATCAGGCAGAGGCACATC+AGG + tig0017916:262-281 Msa1362790:CDS 50.0%
TTCGCACTGTTGGTCCTGAT+TGG + tig0017916:462-481 Msa1362790:intron 50.0%
!! TTAGTGTCGATGTCGGACAC+CGG - tig0017916:582-601 None:intergenic 50.0%
!! ATGAAGCACCGACACTACAC+TGG - tig0017916:652-671 None:intergenic 50.0%
GATACAGGGCCTGTTTGGAT+TGG - tig0017916:812-831 None:intergenic 50.0%
TCACTCACAAGTCCTTTCGG+TGG + tig0017916:1537-1556 Msa1362790:CDS 50.0%
TTCTTTCGCTTCACACGACC+AGG - tig0017916:1570-1589 None:intergenic 50.0%
AATCCTCGTCGGATCTTCGA+GGG + tig0017916:75-94 Msa1362790:five_prime_UTR 50.0%
! TCGAGGGTGAAGCTCTTTTG+AGG + tig0017916:91-110 Msa1362790:five_prime_UTR 50.0%
!! AGGGTGAAGCTCTTTTGAGG+AGG + tig0017916:94-113 Msa1362790:five_prime_UTR 50.0%
GCCTGATAAGAACCCTAGCA+TGG - tig0017916:251-270 None:intergenic 50.0%
CTAGGGTTCTTATCAGGCAG+AGG + tig0017916:253-272 Msa1362790:CDS 50.0%
! TTATCAGGCAGAGGCACATC+AGG + tig0017916:262-281 Msa1362790:CDS 50.0%
TTCGCACTGTTGGTCCTGAT+TGG + tig0017916:462-481 Msa1362790:intron 50.0%
!! TTAGTGTCGATGTCGGACAC+CGG - tig0017916:582-601 None:intergenic 50.0%
!! ATGAAGCACCGACACTACAC+TGG - tig0017916:652-671 None:intergenic 50.0%
GATACAGGGCCTGTTTGGAT+TGG - tig0017916:812-831 None:intergenic 50.0%
TCACTCACAAGTCCTTTCGG+TGG + tig0017916:1537-1556 Msa1362790:CDS 50.0%
TTCTTTCGCTTCACACGACC+AGG - tig0017916:1570-1589 None:intergenic 50.0%
GAATCCTCGTCGGATCTTCG+AGG + tig0017916:74-93 Msa1362790:five_prime_UTR 55.0%
! TCCTCGGATTAGGTGTGTCC+CGG + tig0017916:560-579 Msa1362790:intron 55.0%
!! TAGTGTCGATGTCGGACACC+GGG - tig0017916:581-600 None:intergenic 55.0%
GTTTCATAGGGTTGGGAGGC+AGG + tig0017916:1458-1477 Msa1362790:intron 55.0%
CTCACAAGTCCTTTCGGTGG+TGG + tig0017916:1540-1559 Msa1362790:CDS 55.0%
CCTTCTTGGCTGCAGCCTTA+AGG - tig0017916:1593-1612 None:intergenic 55.0%
CCTTAAGGCTGCAGCCAAGA+AGG + tig0017916:1590-1609 Msa1362790:CDS 55.0%
ATCACCACCGGAAGCCTTCT+TGG - tig0017916:1607-1626 None:intergenic 55.0%
AAGAAGGCTTCCGGTGGTGA+TGG + tig0017916:1606-1625 Msa1362790:CDS 55.0%
!! TTCCGGTGGTGATGGTGATG+AGG + tig0017916:1614-1633 Msa1362790:CDS 55.0%
CTCCTCATCACCATCACCAC+CGG - tig0017916:1619-1638 None:intergenic 55.0%
GAATCCTCGTCGGATCTTCG+AGG + tig0017916:74-93 Msa1362790:five_prime_UTR 55.0%
! TCCTCGGATTAGGTGTGTCC+CGG + tig0017916:560-579 Msa1362790:intron 55.0%
!! TAGTGTCGATGTCGGACACC+GGG - tig0017916:581-600 None:intergenic 55.0%
GTTTCATAGGGTTGGGAGGC+AGG + tig0017916:1458-1477 Msa1362790:intron 55.0%
CTCACAAGTCCTTTCGGTGG+TGG + tig0017916:1540-1559 Msa1362790:CDS 55.0%
CCTTCTTGGCTGCAGCCTTA+AGG - tig0017916:1593-1612 None:intergenic 55.0%
CCTTAAGGCTGCAGCCAAGA+AGG + tig0017916:1590-1609 Msa1362790:CDS 55.0%
ATCACCACCGGAAGCCTTCT+TGG - tig0017916:1607-1626 None:intergenic 55.0%
AAGAAGGCTTCCGGTGGTGA+TGG + tig0017916:1606-1625 Msa1362790:CDS 55.0%
!! TTCCGGTGGTGATGGTGATG+AGG + tig0017916:1614-1633 Msa1362790:CDS 55.0%
CTCCTCATCACCATCACCAC+CGG - tig0017916:1619-1638 None:intergenic 55.0%
TCACCCTCGAAGATCCGACG+AGG - tig0017916:81-100 None:intergenic 60.0%
ACCGGGACACACCTAATCCG+AGG - tig0017916:564-583 None:intergenic 60.0%
CCAGGAAGACCACCACCGAA+AGG - tig0017916:1552-1571 None:intergenic 60.0%
! CCTTTCGGTGGTGGTCTTCC+TGG + tig0017916:1549-1568 Msa1362790:CDS 60.0%
GCTGCAGCCAAGAAGGCTTC+CGG + tig0017916:1597-1616 Msa1362790:CDS 60.0%
!! CGGTGGTGATGGTGATGAGG+AGG + tig0017916:1617-1636 Msa1362790:CDS 60.0%
TCACCCTCGAAGATCCGACG+AGG - tig0017916:81-100 None:intergenic 60.0%
ACCGGGACACACCTAATCCG+AGG - tig0017916:564-583 None:intergenic 60.0%
CCAGGAAGACCACCACCGAA+AGG - tig0017916:1552-1571 None:intergenic 60.0%
! CCTTTCGGTGGTGGTCTTCC+TGG + tig0017916:1549-1568 Msa1362790:CDS 60.0%
GCTGCAGCCAAGAAGGCTTC+CGG + tig0017916:1597-1616 Msa1362790:CDS 60.0%
!! CGGTGGTGATGGTGATGAGG+AGG + tig0017916:1617-1636 Msa1362790:CDS 60.0%
GCAGCCAAGAAGGCTTCCGG+TGG + tig0017916:1600-1619 Msa1362790:CDS 65.0%
GCAGCCAAGAAGGCTTCCGG+TGG + tig0017916:1600-1619 Msa1362790:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0017916 gene 1 2134 1 ID=Msa1362790;Name=Msa1362790
tig0017916 mRNA 1 2134 1 ID=Msa1362790-mRNA-1;Parent=Msa1362790;Name=Msa1362790-mRNA-1;_AED=0.01;_eAED=0.01;_QI=116|1|1|1|1|1|2|484|116
tig0017916 exon 1 283 1 ID=Msa1362790-mRNA-1:exon:13243;Parent=Msa1362790-mRNA-1
tig0017916 exon 1467 2134 1467 ID=Msa1362790-mRNA-1:exon:13244;Parent=Msa1362790-mRNA-1
tig0017916 five_prime_UTR 1 116 1 ID=Msa1362790-mRNA-1:five_prime_utr;Parent=Msa1362790-mRNA-1
tig0017916 CDS 117 283 117 ID=Msa1362790-mRNA-1:cds;Parent=Msa1362790-mRNA-1
tig0017916 CDS 1467 1650 1467 ID=Msa1362790-mRNA-1:cds;Parent=Msa1362790-mRNA-1
tig0017916 three_prime_UTR 1651 2134 1651 ID=Msa1362790-mRNA-1:three_prime_utr;Parent=Msa1362790-mRNA-1
Gene Sequence

>Msa1362790

ATGTTTAAGCATGGCCTTCTAGATGAGACACAGAACAAGCTCGATTATGTGTTGGCTCTTACTGTTGAGAATTTTCTCGAGCGTCGTCTTCAGACACTCGTGTTCAAATCTGGCATGGCTAAGTCCATTCACCATGCTAGGGTTCTTATCAGGCAGAGGCACATCAGGGTTGGGAGGCAGGTAGTGAACATCCCATCCTTCATGGTTAGGGTTGATTCACAGAAGCACATTGACTTTTCACTCACAAGTCCTTTCGGTGGTGGTCTTCCTGGTCGTGTGAAGCGAAAGAACCTTAAGGCTGCAGCCAAGAAGGCTTCCGGTGGTGATGGTGATGAGGAGGATGAAGATTAA
Protein sequence

>Msa1362790

MFKHGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGLPGRVKRKNLKAAAKKASGGDGDEEDED*