Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076760 | AFK49659.1 | 98.851 | 174 | 2 | 0 | 1 | 174 | 1 | 174 | 2.19e-125 | 360 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076760 | sp|Q8VYK4|NFYB8_ARATH | 68.125 | 160 | 44 | 4 | 11 | 168 | 14 | 168 | 3.17e-71 | 215 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076760 | I3TAW7 | 98.851 | 174 | 2 | 0 | 1 | 174 | 1 | 174 | 1.05e-125 | 360 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0076760 | TF | NF-YB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0076760 | Msa0169230 | 0.861461 | 1.009413e-63 | -8.615850e-47 |
| Msa0076760 | Msa0187930 | 0.801325 | 9.498976e-49 | -8.615850e-47 |
| Msa0076760 | Msa0244780 | 0.800514 | 1.390952e-48 | -8.615850e-47 |
| Msa0076760 | Msa0262480 | 0.811029 | 8.585679e-51 | -8.615850e-47 |
| Msa0076760 | Msa0300350 | 0.809090 | 2.247141e-50 | -8.615850e-47 |
| Msa0076760 | Msa0443390 | 0.801929 | 7.141331e-49 | -8.615850e-47 |
| Msa0076760 | Msa0526540 | 0.812199 | 4.781400e-51 | -8.615850e-47 |
| Msa0076760 | Msa0576940 | 0.812247 | 4.667747e-51 | -8.615850e-47 |
| Msa0076760 | Msa0631250 | 0.824160 | 9.383318e-54 | -8.615850e-47 |
| Msa0076760 | Msa0666230 | 0.801584 | 8.404449e-49 | -8.615850e-47 |
| Msa0076760 | Msa0785130 | 0.810619 | 1.053233e-50 | -8.615850e-47 |
| Msa0076760 | Msa1019240 | 0.821173 | 4.647833e-53 | -8.615850e-47 |
| Msa0076760 | Msa1019260 | 0.813840 | 2.087980e-51 | -8.615850e-47 |
| Msa0076760 | Msa1104210 | 0.803352 | 3.632401e-49 | -8.615850e-47 |
| Msa0076760 | Msa1166870 | 0.801346 | 9.404956e-49 | -8.615850e-47 |
| Msa0076760 | Msa1349570 | 0.815826 | 7.577896e-52 | -8.615850e-47 |
| Msa0076760 | Msa1363330 | 0.809498 | 1.836910e-50 | -8.615850e-47 |
| Msa0076760 | Msa1369190 | 0.827858 | 1.239904e-54 | -8.615850e-47 |
| Msa0076760 | Msa1386600 | 0.808632 | 2.814882e-50 | -8.615850e-47 |
| Msa0076760 | Msa1427560 | 0.804180 | 2.444460e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076760 | MtrunA17_Chr1g0185911 | 98.851 | 174 | 2 | 0 | 1 | 174 | 1 | 174 | 2.01e-129 | 360 |
| Msa0076760 | MtrunA17_Chr7g0263601 | 70.000 | 170 | 35 | 7 | 11 | 174 | 12 | 171 | 3.85e-74 | 220 |
| Msa0076760 | MtrunA17_Chr5g0446491 | 60.127 | 158 | 49 | 3 | 1 | 150 | 1 | 152 | 5.99e-60 | 184 |
| Msa0076760 | MtrunA17_Chr3g0102351 | 68.217 | 129 | 39 | 1 | 1 | 129 | 1 | 127 | 1.24e-58 | 181 |
| Msa0076760 | MtrunA17_Chr2g0290491 | 65.926 | 135 | 36 | 2 | 9 | 143 | 3 | 127 | 4.14e-58 | 179 |
| Msa0076760 | MtrunA17_Chr8g0382931 | 69.912 | 113 | 32 | 1 | 24 | 136 | 23 | 133 | 5.33e-53 | 167 |
| Msa0076760 | MtrunA17_Chr4g0076321 | 69.828 | 116 | 30 | 3 | 22 | 133 | 10 | 124 | 3.43e-51 | 160 |
| Msa0076760 | MtrunA17_Chr8g0384451 | 66.055 | 109 | 35 | 1 | 28 | 136 | 39 | 145 | 4.75e-50 | 160 |
| Msa0076760 | MtrunA17_Chr1g0195851 | 69.474 | 95 | 29 | 0 | 28 | 122 | 35 | 129 | 9.44e-48 | 154 |
| Msa0076760 | MtrunA17_Chr2g0296321 | 71.429 | 91 | 26 | 0 | 28 | 118 | 65 | 155 | 7.34e-47 | 153 |
| Msa0076760 | MtrunA17_Chr4g0067091 | 70.330 | 91 | 27 | 0 | 28 | 118 | 21 | 111 | 6.18e-46 | 150 |
| Msa0076760 | MtrunA17_Chr4g0076381 | 57.759 | 116 | 46 | 1 | 3 | 118 | 35 | 147 | 3.33e-45 | 149 |
| Msa0076760 | MtrunA17_Chr1g0165041 | 51.562 | 128 | 55 | 2 | 28 | 154 | 5 | 126 | 7.61e-43 | 141 |
| Msa0076760 | MtrunA17_Chr1g0191981 | 57.609 | 92 | 39 | 0 | 29 | 120 | 4 | 95 | 2.01e-37 | 125 |
| Msa0076760 | MtrunA17_Chr1g0159271 | 50.000 | 82 | 41 | 0 | 43 | 124 | 1 | 82 | 3.02e-24 | 91.3 |
| Msa0076760 | MtrunA17_Chr5g0446601 | 44.118 | 102 | 57 | 0 | 22 | 123 | 17 | 118 | 1.06e-23 | 92.0 |
| Msa0076760 | MtrunA17_Chr1g0159291 | 40.789 | 76 | 45 | 0 | 34 | 109 | 7 | 82 | 5.26e-19 | 77.0 |
| Msa0076760 | MtrunA17_Chr2g0307551 | 33.645 | 107 | 71 | 0 | 26 | 132 | 8 | 114 | 5.55e-19 | 79.0 |
| Msa0076760 | MtrunA17_Chr1g0158951 | 61.111 | 54 | 21 | 0 | 64 | 117 | 24 | 77 | 8.95e-19 | 77.4 |
| Msa0076760 | MtrunA17_Chr4g0062271 | 41.176 | 85 | 48 | 1 | 30 | 114 | 12 | 94 | 1.58e-17 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076760 | AT2G37060.2 | 68.125 | 160 | 44 | 4 | 11 | 168 | 14 | 168 | 3.22e-72 | 215 |
| Msa0076760 | AT2G37060.3 | 68.125 | 160 | 44 | 4 | 11 | 168 | 14 | 168 | 3.22e-72 | 215 |
| Msa0076760 | AT2G37060.1 | 68.125 | 160 | 44 | 4 | 11 | 168 | 14 | 168 | 3.22e-72 | 215 |
| Msa0076760 | AT2G38880.7 | 79.339 | 121 | 24 | 1 | 23 | 143 | 15 | 134 | 4.85e-67 | 201 |
| Msa0076760 | AT3G53340.5 | 67.500 | 160 | 39 | 5 | 17 | 168 | 19 | 173 | 1.34e-66 | 201 |
| Msa0076760 | AT3G53340.1 | 67.500 | 160 | 39 | 5 | 17 | 168 | 19 | 173 | 1.34e-66 | 201 |
| Msa0076760 | AT2G38880.3 | 78.049 | 123 | 24 | 2 | 23 | 143 | 15 | 136 | 3.07e-65 | 196 |
| Msa0076760 | AT2G38880.2 | 78.049 | 123 | 24 | 2 | 23 | 143 | 15 | 136 | 4.61e-65 | 196 |
| Msa0076760 | AT2G38880.1 | 78.049 | 123 | 24 | 2 | 23 | 143 | 15 | 136 | 4.61e-65 | 196 |
| Msa0076760 | AT2G38880.5 | 78.049 | 123 | 24 | 2 | 23 | 143 | 15 | 136 | 4.61e-65 | 196 |
| Msa0076760 | AT2G38880.11 | 64.286 | 154 | 25 | 3 | 19 | 143 | 7 | 159 | 5.03e-61 | 187 |
| Msa0076760 | AT2G38880.8 | 64.286 | 154 | 25 | 3 | 19 | 143 | 7 | 159 | 5.03e-61 | 187 |
| Msa0076760 | AT3G53340.3 | 81.481 | 108 | 18 | 1 | 17 | 124 | 19 | 124 | 1.10e-60 | 185 |
| Msa0076760 | AT3G53340.2 | 81.481 | 108 | 18 | 1 | 17 | 124 | 19 | 124 | 1.10e-60 | 185 |
| Msa0076760 | AT2G38880.4 | 82.692 | 104 | 14 | 1 | 19 | 118 | 7 | 110 | 1.06e-59 | 181 |
| Msa0076760 | AT3G53340.4 | 84.314 | 102 | 14 | 1 | 17 | 118 | 19 | 118 | 1.09e-59 | 182 |
| Msa0076760 | AT2G38880.9 | 82.692 | 104 | 13 | 1 | 15 | 118 | 12 | 110 | 5.05e-59 | 181 |
| Msa0076760 | AT2G38880.10 | 82.692 | 104 | 13 | 1 | 15 | 118 | 12 | 110 | 5.05e-59 | 181 |
| Msa0076760 | AT2G38880.6 | 82.692 | 104 | 13 | 1 | 15 | 118 | 12 | 110 | 5.05e-59 | 181 |
| Msa0076760 | AT4G14540.1 | 72.034 | 118 | 25 | 2 | 1 | 118 | 1 | 110 | 1.20e-58 | 181 |
| Msa0076760 | AT5G47640.1 | 74.359 | 117 | 24 | 2 | 28 | 144 | 26 | 136 | 1.42e-57 | 179 |
| Msa0076760 | AT2G13570.1 | 63.566 | 129 | 36 | 3 | 9 | 128 | 7 | 133 | 2.39e-52 | 166 |
| Msa0076760 | AT2G47810.1 | 68.085 | 94 | 30 | 0 | 24 | 117 | 46 | 139 | 3.30e-45 | 146 |
| Msa0076760 | AT5G47670.2 | 56.780 | 118 | 46 | 1 | 14 | 131 | 19 | 131 | 3.47e-45 | 148 |
| Msa0076760 | AT5G47670.1 | 61.538 | 104 | 40 | 0 | 28 | 131 | 57 | 160 | 8.32e-45 | 148 |
| Msa0076760 | AT5G47670.3 | 61.538 | 104 | 40 | 0 | 28 | 131 | 57 | 160 | 8.32e-45 | 148 |
| Msa0076760 | AT1G21970.1 | 53.043 | 115 | 53 | 1 | 26 | 139 | 56 | 170 | 7.13e-43 | 143 |
| Msa0076760 | AT1G09030.1 | 52.830 | 106 | 48 | 1 | 29 | 132 | 3 | 108 | 8.44e-39 | 129 |
| Msa0076760 | AT5G08190.2 | 38.679 | 106 | 59 | 2 | 29 | 130 | 11 | 114 | 4.71e-20 | 82.4 |
| Msa0076760 | AT5G23090.4 | 36.792 | 106 | 61 | 2 | 30 | 131 | 12 | 115 | 4.81e-19 | 79.7 |
| Msa0076760 | AT5G08190.1 | 41.860 | 86 | 48 | 1 | 29 | 114 | 11 | 94 | 1.25e-18 | 78.6 |
| Msa0076760 | AT5G23090.5 | 41.176 | 85 | 48 | 1 | 30 | 114 | 12 | 94 | 5.56e-18 | 77.0 |
| Msa0076760 | AT5G23090.2 | 41.176 | 85 | 48 | 1 | 30 | 114 | 12 | 94 | 5.56e-18 | 77.0 |
| Msa0076760 | AT5G23090.1 | 41.176 | 85 | 48 | 1 | 30 | 114 | 12 | 94 | 5.56e-18 | 77.0 |
| Msa0076760 | AT5G23090.3 | 42.029 | 69 | 38 | 1 | 46 | 114 | 15 | 81 | 1.79e-13 | 64.7 |
Find 53 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTCTTTCTCTTCTCTTTC+TGG | 0.035702 | 1_2:+53081193 | None:intergenic |
| TTATCACTTCAATGTCTTAT+TGG | 0.214880 | 1_2:-53082164 | Msa0076760:five_prime_UTR |
| ATTGTTGTTTCTCTCTTTGA+TGG | 0.244029 | 1_2:-53078191 | Msa0076760:three_prime_UTR |
| GAGAAGAGAAAGACCATTAA+TGG | 0.272230 | 1_2:-53081186 | Msa0076760:CDS |
| TAACAAATCATCTCCATTAA+TGG | 0.277036 | 1_2:+53081173 | None:intergenic |
| CATATTGCAGTTTGTTCATC+AGG | 0.293386 | 1_2:-53080662 | Msa0076760:intron |
| TTATGGGCTATGGCTACTTT+AGG | 0.294228 | 1_2:-53081153 | Msa0076760:CDS |
| TGTCAAAGCACAAATGTTCT+TGG | 0.298403 | 1_2:-53078150 | Msa0076760:three_prime_UTR |
| CGTACCTAGAAAAGTGTATT+TGG | 0.300083 | 1_2:+53082069 | None:intergenic |
| TTTATTATTTCATTTAGTTT+AGG | 0.302585 | 1_2:-53078218 | Msa0076760:three_prime_UTR |
| TTTGCTTACAAGGCAAATAT+AGG | 0.342736 | 1_2:+53082120 | None:intergenic |
| TGATTGGATGTTTGCTTACA+AGG | 0.361057 | 1_2:+53082110 | None:intergenic |
| TAATGGAGATGATTTGTTAT+GGG | 0.363879 | 1_2:-53081169 | Msa0076760:CDS |
| TTAATGGAGATGATTTGTTA+TGG | 0.386568 | 1_2:-53081170 | Msa0076760:CDS |
| TCTCGTGGCTTTCTTCGCAT+TGG | 0.434390 | 1_2:+53081850 | None:intergenic |
| GACCTGGAGGACCGCCAACT+TGG | 0.437143 | 1_2:+53080806 | None:intergenic |
| GAGGTGCAACACAATGAAAA+TGG | 0.439869 | 1_2:+53078500 | None:intergenic |
| GCAGGTGCATCCACAACATC+TGG | 0.444089 | 1_2:-53078574 | Msa0076760:intron |
| CTTGCTAGGTACACCTTAAG+TGG | 0.449127 | 1_2:+53081111 | None:intergenic |
| TGGTAGGAAAATGGTGGAAG+AGG | 0.453397 | 1_2:+53078481 | None:intergenic |
| ACAAATGTTCTTGGAAGGAT+TGG | 0.454730 | 1_2:-53078141 | Msa0076760:three_prime_UTR |
| CTCGAGAAGAAACAATTGAT+TGG | 0.456097 | 1_2:+53082094 | None:intergenic |
| GACCAAGTTGGCGGTCCTCC+AGG | 0.458458 | 1_2:-53080808 | Msa0076760:CDS |
| ATTCTGCTAATGTTAGCTAT+AGG | 0.459912 | 1_2:+53081765 | None:intergenic |
| ATGTTCTTGGAAGGATTGGC+AGG | 0.477353 | 1_2:-53078137 | Msa0076760:three_prime_UTR |
| AGACTATATAGAACCACTTA+AGG | 0.485870 | 1_2:-53081124 | Msa0076760:CDS |
| TTTGAGCTATATTGATTCCC+AGG | 0.487521 | 1_2:-53080635 | Msa0076760:intron |
| AGATGATTTGTTATGGGCTA+TGG | 0.505790 | 1_2:-53081163 | Msa0076760:CDS |
| TCCTCCAGGTCAAAATGCTC+AGG | 0.507423 | 1_2:-53080794 | Msa0076760:intron |
| GATGAACTGAAACAATGGTT+TGG | 0.515083 | 1_2:-53078431 | Msa0076760:three_prime_UTR |
| CAAAAGATGAACTGAAACAA+TGG | 0.520156 | 1_2:-53078436 | Msa0076760:three_prime_UTR |
| CACAATGAAAATGGCAGGTG+AGG | 0.522585 | 1_2:+53078509 | None:intergenic |
| GTTAGAAACAGTGATGGATC+TGG | 0.524015 | 1_2:-53080838 | Msa0076760:CDS |
| TGCAACACAATGAAAATGGC+AGG | 0.524060 | 1_2:+53078504 | None:intergenic |
| TTACCTCTCTGAACCTTGCT+AGG | 0.526654 | 1_2:+53081097 | None:intergenic |
| AAAGCACAAATGTTCTTGGA+AGG | 0.544059 | 1_2:-53078146 | Msa0076760:three_prime_UTR |
| TTGGTTCTGTGCATCTGCCA+TGG | 0.549081 | 1_2:+53081869 | None:intergenic |
| TGTGTAGAAACTAGAAAGCA+TGG | 0.553914 | 1_2:-53078386 | Msa0076760:three_prime_UTR |
| TTCTGATAGGGTGATAGTAA+AGG | 0.555051 | 1_2:-53080865 | Msa0076760:intron |
| CACTTAAGGTGTACCTAGCA+AGG | 0.580922 | 1_2:-53081110 | Msa0076760:CDS |
| ATATTGCAGTTTGTTCATCA+GGG | 0.598604 | 1_2:-53080661 | Msa0076760:intron |
| GGATCTGTTAGAAACAGTGA+TGG | 0.605861 | 1_2:-53080844 | Msa0076760:CDS |
| TCTGTTCACCACCACTCTCG+TGG | 0.616032 | 1_2:+53081835 | None:intergenic |
| TGCGAAGAAAGCCACGAGAG+TGG | 0.627075 | 1_2:-53081846 | Msa0076760:CDS |
| GGTAGACGAGACCAAGTTGG+CGG | 0.631551 | 1_2:-53080817 | Msa0076760:CDS |
| TCTCATCATGACAAGTTGCA+TGG | 0.631594 | 1_2:+53078301 | None:intergenic |
| GTGTAGAAACTAGAAAGCAT+GGG | 0.636238 | 1_2:-53078385 | Msa0076760:three_prime_UTR |
| TCTGGTAGACGAGACCAAGT+TGG | 0.636481 | 1_2:-53080820 | Msa0076760:CDS |
| GAAGGCATAACCAGATGTTG+TGG | 0.663094 | 1_2:+53078564 | None:intergenic |
| GAAGAAAGCCACGAGAGTGG+TGG | 0.673522 | 1_2:-53081843 | Msa0076760:CDS |
| GGTGGTGAACAGAGTCCACG+TGG | 0.738315 | 1_2:-53081825 | Msa0076760:CDS |
| GAAGCAGAAGAAGAGCCACG+TGG | 0.770183 | 1_2:+53081810 | None:intergenic |
| GTACCTAGCAAGGTTCAGAG+AGG | 0.773002 | 1_2:-53081100 | Msa0076760:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTATTTCATTTAGTTT+AGG | - | chr1_2:53082089-53082108 | Msa0076760:five_prime_UTR | 10.0% |
| !!! | AATAAAAAATACTATGGTTT+TGG | + | chr1_2:53078680-53078699 | None:intergenic | 15.0% |
| !! | GTAATATAAATTTCAGTTAT+TGG | - | chr1_2:53078769-53078788 | Msa0076760:intron | 15.0% |
| !!! | ATATAATAAATTGTGGTTTT+TGG | - | chr1_2:53078941-53078960 | Msa0076760:intron | 15.0% |
| !!! | TTTAATTTGTGTTTTTATTC+TGG | - | chr1_2:53079554-53079573 | Msa0076760:intron | 15.0% |
| !! | GTATATTGAAAAAAAGTGAA+TGG | + | chr1_2:53078352-53078371 | None:intergenic | 20.0% |
| !! | AGTTGAAAAATGCTTAAAAA+TGG | - | chr1_2:53078721-53078740 | Msa0076760:intron | 20.0% |
| !! | ATGGGTAATATAATAAATTG+TGG | - | chr1_2:53078934-53078953 | Msa0076760:intron | 20.0% |
| !! | TTGTCAATTTATATGATGTT+TGG | - | chr1_2:53079003-53079022 | Msa0076760:intron | 20.0% |
| !! | AAATAATACAATCAATCAGA+GGG | + | chr1_2:53079366-53079385 | None:intergenic | 20.0% |
| !! | AAAATAATACAATCAATCAG+AGG | + | chr1_2:53079367-53079386 | None:intergenic | 20.0% |
| !!! | ATTTTGATATAGCAAACATT+GGG | + | chr1_2:53080259-53080278 | None:intergenic | 20.0% |
| !!! | AATCAATAAAGTTCTGATAA+AGG | + | chr1_2:53080578-53080597 | None:intergenic | 20.0% |
| !! | AAAGATCAAAGAGAAAAAAA+TGG | + | chr1_2:53081145-53081164 | None:intergenic | 20.0% |
| ! | TTATCACTTCAATGTCTTAT+TGG | - | chr1_2:53078143-53078162 | Msa0076760:three_prime_UTR | 25.0% |
| ! | TATTGAAAAAAAGTGAATGG+TGG | + | chr1_2:53078349-53078368 | None:intergenic | 25.0% |
| !!! | ATTCGTTGGTTTTAGTTTTA+GGG | - | chr1_2:53078407-53078426 | Msa0076760:three_prime_UTR | 25.0% |
| ! | AAAAAAGCTTTACCTTCAAA+TGG | - | chr1_2:53078569-53078588 | Msa0076760:CDS | 25.0% |
| ! | AAAAAGCTTTACCTTCAAAT+GGG | - | chr1_2:53078570-53078589 | Msa0076760:CDS | 25.0% |
| !!! | AATACTATGGTTTTGGAATT+GGG | + | chr1_2:53078673-53078692 | None:intergenic | 25.0% |
| !!! | AAATACTATGGTTTTGGAAT+TGG | + | chr1_2:53078674-53078693 | None:intergenic | 25.0% |
| !! | TTTTATGCTCTCTTTTAGAT+AGG | - | chr1_2:53078747-53078766 | Msa0076760:intron | 25.0% |
| ! | AAATTTCAGTTATTGGCATT+TGG | - | chr1_2:53078776-53078795 | Msa0076760:intron | 25.0% |
| ! | AATTTCAGTTATTGGCATTT+GGG | - | chr1_2:53078777-53078796 | Msa0076760:intron | 25.0% |
| ! | TTTGCTAATTTATATGATGC+TGG | - | chr1_2:53078829-53078848 | Msa0076760:intron | 25.0% |
| ! | TTGCTAATTTATATGATGCT+GGG | - | chr1_2:53078830-53078849 | Msa0076760:intron | 25.0% |
| !!! | TTTTTTACCCTCTTTTTAGA+TGG | - | chr1_2:53078915-53078934 | Msa0076760:intron | 25.0% |
| !! | TTTTTACCCTCTTTTTAGAT+GGG | - | chr1_2:53078916-53078935 | Msa0076760:intron | 25.0% |
| ! | ATATTACCCATCTAAAAAGA+GGG | + | chr1_2:53078925-53078944 | None:intergenic | 25.0% |
| ! | TATATTACCCATCTAAAAAG+AGG | + | chr1_2:53078926-53078945 | None:intergenic | 25.0% |
| !!! | ATGTTTGGTGAAAATCTTTT+AGG | - | chr1_2:53079018-53079037 | Msa0076760:intron | 25.0% |
| !!! | TGTTTGGTGAAAATCTTTTA+GGG | - | chr1_2:53079019-53079038 | Msa0076760:intron | 25.0% |
| !!! | TTTTTGTTTGTTGTCTGAAT+TGG | - | chr1_2:53079050-53079069 | Msa0076760:intron | 25.0% |
| ! | TAACAAATCATCTCCATTAA+TGG | + | chr1_2:53079137-53079156 | None:intergenic | 25.0% |
| !!! | TTAATGGAGATGATTTGTTA+TGG | - | chr1_2:53079137-53079156 | Msa0076760:intron | 25.0% |
| !!! | TAATGGAGATGATTTGTTAT+GGG | - | chr1_2:53079138-53079157 | Msa0076760:intron | 25.0% |
| ! | CCATAAAGAACATTATCAAA+TGG | + | chr1_2:53079255-53079274 | None:intergenic | 25.0% |
| !!! | CCATTTGATAATGTTCTTTA+TGG | - | chr1_2:53079252-53079271 | Msa0076760:intron | 25.0% |
| ! | AATAATACAATCAATCAGAG+GGG | + | chr1_2:53079365-53079384 | None:intergenic | 25.0% |
| !! | TTTTTATTCTGGTGACTTTT+TGG | - | chr1_2:53079565-53079584 | Msa0076760:intron | 25.0% |
| !! | TTTAGTTCCAGATTTCAATT+TGG | + | chr1_2:53079980-53079999 | None:intergenic | 25.0% |
| ! | TCAAACTGAATGTTAACATT+TGG | + | chr1_2:53080048-53080067 | None:intergenic | 25.0% |
| !!! | GATTTTGATATAGCAAACAT+TGG | + | chr1_2:53080260-53080279 | None:intergenic | 25.0% |
| !!! | ATGTTTGCTATATCAAAATC+TGG | - | chr1_2:53080260-53080279 | Msa0076760:intron | 25.0% |
| ! | TATATCAAAATCTGGTATTC+AGG | - | chr1_2:53080268-53080287 | Msa0076760:intron | 25.0% |
| ! | ATTGAATTTCAACATAGACA+AGG | + | chr1_2:53080353-53080372 | None:intergenic | 25.0% |
| ! | TCTTCATAATAACTCAATCT+GGG | + | chr1_2:53080377-53080396 | None:intergenic | 25.0% |
| ! | AAGAGCAATCACAATATATA+TGG | + | chr1_2:53080442-53080461 | None:intergenic | 25.0% |
| ! | ATATATATTGTGATTGCTCT+TGG | - | chr1_2:53080441-53080460 | Msa0076760:intron | 25.0% |
| ! | CAAACAAACAAAATTCAGTA+TGG | + | chr1_2:53080885-53080904 | None:intergenic | 25.0% |
| ! | AAGAATTAAGAGTAGTGATT+TGG | - | chr1_2:53081596-53081615 | Msa0076760:intron | 25.0% |
| !! | TATTCATGATTTTGCATTGA+AGG | + | chr1_2:53081764-53081783 | None:intergenic | 25.0% |
| !!! | GGTTTGGTGATTTTAAATTT+AGG | - | chr1_2:53081892-53081911 | Msa0076760:intron | 25.0% |
| !! | AAAATTTTGTTACGGTATTC+AGG | - | chr1_2:53081949-53081968 | Msa0076760:intron | 25.0% |
| TTTGCTTACAAGGCAAATAT+AGG | + | chr1_2:53078190-53078209 | None:intergenic | 30.0% | |
| ! | AGTGAATGGTGGAAATTAAA+TGG | + | chr1_2:53078338-53078357 | None:intergenic | 30.0% |
| !! | TTTTCTTTGATCTGATTCGT+TGG | - | chr1_2:53078393-53078412 | Msa0076760:three_prime_UTR | 30.0% |
| !!! | GATTCGTTGGTTTTAGTTTT+AGG | - | chr1_2:53078406-53078425 | Msa0076760:three_prime_UTR | 30.0% |
| ATTCTGCTAATGTTAGCTAT+AGG | + | chr1_2:53078545-53078564 | None:intergenic | 30.0% | |
| ! | TTTGTTGTCTGAATTGGAAA+TGG | - | chr1_2:53079056-53079075 | Msa0076760:intron | 30.0% |
| ! | TGAATTGGAAATGGATGTTT+TGG | - | chr1_2:53079065-53079084 | Msa0076760:intron | 30.0% |
| ! | GAATTGGAAATGGATGTTTT+GGG | - | chr1_2:53079066-53079085 | Msa0076760:intron | 30.0% |
| AGACTATATAGAACCACTTA+AGG | - | chr1_2:53079183-53079202 | Msa0076760:intron | 30.0% | |
| TATGTACTTTCTCTTGATGT+TGG | - | chr1_2:53079616-53079635 | Msa0076760:intron | 30.0% | |
| ! | ATATTGCAGTTTGTTCATCA+GGG | - | chr1_2:53079646-53079665 | Msa0076760:intron | 30.0% |
| AACAAGTTCATGCTCATTTA+TGG | - | chr1_2:53079747-53079766 | Msa0076760:intron | 30.0% | |
| CAATACATGTTGCCAATTTA+AGG | - | chr1_2:53079825-53079844 | Msa0076760:intron | 30.0% | |
| TTTCGACTGAATCAATGAAT+TGG | + | chr1_2:53079866-53079885 | None:intergenic | 30.0% | |
| TTGATTCAGTCGAAATAGAT+TGG | - | chr1_2:53079871-53079890 | Msa0076760:intron | 30.0% | |
| TGATTCAGTCGAAATAGATT+GGG | - | chr1_2:53079872-53079891 | Msa0076760:intron | 30.0% | |
| TATGTAAGCAGATAATTACG+TGG | + | chr1_2:53079949-53079968 | None:intergenic | 30.0% | |
| CAGATTTCAATTTGGATGAT+TGG | + | chr1_2:53079972-53079991 | None:intergenic | 30.0% | |
| CAATCATCCAAATTGAAATC+TGG | - | chr1_2:53079970-53079989 | Msa0076760:intron | 30.0% | |
| AAAACAGAATGGATCAATAG+GGG | + | chr1_2:53080307-53080326 | None:intergenic | 30.0% | |
| CAAAACAGAATGGATCAATA+GGG | + | chr1_2:53080308-53080327 | None:intergenic | 30.0% | |
| TCAAAACAGAATGGATCAAT+AGG | + | chr1_2:53080309-53080328 | None:intergenic | 30.0% | |
| !! | ATCCATTCTGTTTTGAGTAT+CGG | - | chr1_2:53080313-53080332 | Msa0076760:intron | 30.0% |
| GTCTTCATAATAACTCAATC+TGG | + | chr1_2:53080378-53080397 | None:intergenic | 30.0% | |
| CAATCACAATATATATGGTG+GGG | + | chr1_2:53080437-53080456 | None:intergenic | 30.0% | |
| GCAATCACAATATATATGGT+GGG | + | chr1_2:53080438-53080457 | None:intergenic | 30.0% | |
| AGCAATCACAATATATATGG+TGG | + | chr1_2:53080439-53080458 | None:intergenic | 30.0% | |
| !!! | TTTTTTGCAGCATCTTCTAT+TGG | - | chr1_2:53080693-53080712 | Msa0076760:intron | 30.0% |
| TGGTTGTGTTAATAACCTTT+AGG | - | chr1_2:53080713-53080732 | Msa0076760:intron | 30.0% | |
| ! | CCAATATGGTACTATCTTTT+GGG | + | chr1_2:53080816-53080835 | None:intergenic | 30.0% |
| ! | TCCAATATGGTACTATCTTT+TGG | + | chr1_2:53080817-53080836 | None:intergenic | 30.0% |
| ATTCGAAAGTTACAAACCAA+AGG | + | chr1_2:53080948-53080967 | None:intergenic | 30.0% | |
| TAATAGTAGCATCAGATTTG+TGG | + | chr1_2:53081213-53081232 | None:intergenic | 30.0% | |
| TCAAACAAAAGCTCAAATGT+GGG | + | chr1_2:53081429-53081448 | None:intergenic | 30.0% | |
| ATCAAACAAAAGCTCAAATG+TGG | + | chr1_2:53081430-53081449 | None:intergenic | 30.0% | |
| !! | CAAGTTCTGACTTTGTATTT+TGG | + | chr1_2:53081458-53081477 | None:intergenic | 30.0% |
| !! | CTGATTTTGACATGACAATT+CGG | - | chr1_2:53081484-53081503 | Msa0076760:intron | 30.0% |
| CCTAAGAAATATGTTCATAG+TGG | + | chr1_2:53081681-53081700 | None:intergenic | 30.0% | |
| CCACTATGAACATATTTCTT+AGG | - | chr1_2:53081678-53081697 | Msa0076760:CDS | 30.0% | |
| !! | TTAATTTGTTGCTGATTTGC+AGG | - | chr1_2:53081715-53081734 | Msa0076760:CDS | 30.0% |
| !! | TTGTCTTTTTGGTAGGAAAA+TGG | + | chr1_2:53081838-53081857 | None:intergenic | 30.0% |
| ! | TTGTTTCAGTTCATCTTTTG+AGG | + | chr1_2:53081871-53081890 | None:intergenic | 30.0% |
| CAAAAGATGAACTGAAACAA+TGG | - | chr1_2:53081871-53081890 | Msa0076760:exon | 30.0% | |
| ! | TGGGTGTCAAAATTTTGTTA+CGG | - | chr1_2:53081941-53081960 | Msa0076760:intron | 30.0% |
| !! | ATTGTTGTTTCTCTCTTTGA+TGG | - | chr1_2:53082116-53082135 | Msa0076760:five_prime_UTR | 30.0% |
| TGATTGGATGTTTGCTTACA+AGG | + | chr1_2:53078200-53078219 | None:intergenic | 35.0% | |
| CTCGAGAAGAAACAATTGAT+TGG | + | chr1_2:53078216-53078235 | None:intergenic | 35.0% | |
| ! | CGTACCTAGAAAAGTGTATT+TGG | + | chr1_2:53078241-53078260 | None:intergenic | 35.0% |
| TGCACATGGATGAAATTGAA+TGG | + | chr1_2:53078286-53078305 | None:intergenic | 35.0% | |
| ! | AAATGGTGATAGTGACAGAA+CGG | + | chr1_2:53078321-53078340 | None:intergenic | 35.0% |
| ! | TTCGCAATTTTCCCATTTGA+AGG | + | chr1_2:53078584-53078603 | None:intergenic | 35.0% |
| TTATTGGCATTTGGGTCTAT+TGG | - | chr1_2:53078785-53078804 | Msa0076760:intron | 35.0% | |
| CTAATTTATATGATGCTGGG+TGG | - | chr1_2:53078833-53078852 | Msa0076760:intron | 35.0% | |
| ! | TGCTGGGTGGAAAATATTTT+AGG | - | chr1_2:53078846-53078865 | Msa0076760:intron | 35.0% |
| ! | GCTGGGTGGAAAATATTTTA+GGG | - | chr1_2:53078847-53078866 | Msa0076760:intron | 35.0% |
| !!! | ATTGTGGTTTTTGGCAAATG+TGG | - | chr1_2:53078950-53078969 | Msa0076760:intron | 35.0% |
| GAGAAGAGAAAGACCATTAA+TGG | - | chr1_2:53079121-53079140 | Msa0076760:intron | 35.0% | |
| !! | AGATGATTTGTTATGGGCTA+TGG | - | chr1_2:53079144-53079163 | Msa0076760:intron | 35.0% |
| TCGACATTTCAAAATCACCA+GGG | + | chr1_2:53079311-53079330 | None:intergenic | 35.0% | |
| !!! | TGGTGATTTTGAAATGTCGA+CGG | - | chr1_2:53079311-53079330 | Msa0076760:intron | 35.0% |
| TTCTGATAGGGTGATAGTAA+AGG | - | chr1_2:53079442-53079461 | Msa0076760:intron | 35.0% | |
| !! | GTGACTTTTTGGTCAAAACA+AGG | - | chr1_2:53079576-53079595 | Msa0076760:intron | 35.0% |
| ! | CATATTGCAGTTTGTTCATC+AGG | - | chr1_2:53079645-53079664 | Msa0076760:intron | 35.0% |
| !! | TTTGAGCTATATTGATTCCC+AGG | - | chr1_2:53079672-53079691 | Msa0076760:intron | 35.0% |
| ! | ATGTTGCCAATTTAAGGCTA+TGG | - | chr1_2:53079831-53079850 | Msa0076760:intron | 35.0% |
| ! | AGCTAACCATAGCCTTAAAT+TGG | + | chr1_2:53079840-53079859 | None:intergenic | 35.0% |
| GATTCAGTCGAAATAGATTG+GGG | - | chr1_2:53079873-53079892 | Msa0076760:intron | 35.0% | |
| GATAATTACGTGGATAATCC+TGG | + | chr1_2:53079939-53079958 | None:intergenic | 35.0% | |
| AAAAATGAGCAAGCAAGGTA+AGG | + | chr1_2:53080023-53080042 | None:intergenic | 35.0% | |
| TGGAAAAAAATGAGCAAGCA+AGG | + | chr1_2:53080028-53080047 | None:intergenic | 35.0% | |
| ! | TTTGAGATCGTGTATTTCCT+GGG | - | chr1_2:53080063-53080082 | Msa0076760:intron | 35.0% |
| CAGGACAGTGTAACTTATAT+GGG | + | chr1_2:53080099-53080118 | None:intergenic | 35.0% | |
| ACAGGACAGTGTAACTTATA+TGG | + | chr1_2:53080100-53080119 | None:intergenic | 35.0% | |
| TTATCTCAGTCTAACTATCC+AGG | - | chr1_2:53080136-53080155 | Msa0076760:intron | 35.0% | |
| TATCTCAGTCTAACTATCCA+GGG | - | chr1_2:53080137-53080156 | Msa0076760:intron | 35.0% | |
| ! | AGTTTGGAGTATGAGATAAG+TGG | + | chr1_2:53080199-53080218 | None:intergenic | 35.0% |
| AATCTGGTATTCAGGTCTAA+TGG | - | chr1_2:53080276-53080295 | Msa0076760:intron | 35.0% | |
| ATCTGGTATTCAGGTCTAAT+GGG | - | chr1_2:53080277-53080296 | Msa0076760:intron | 35.0% | |
| GAAAACAGGGAGATAGAAAT+CGG | + | chr1_2:53080514-53080533 | None:intergenic | 35.0% | |
| TGAGAAGATTAGGGAAAACA+GGG | + | chr1_2:53080527-53080546 | None:intergenic | 35.0% | |
| GAGAAAGAGTGAGAAGATTA+GGG | + | chr1_2:53080536-53080555 | None:intergenic | 35.0% | |
| AGAGAAAGAGTGAGAAGATT+AGG | + | chr1_2:53080537-53080556 | None:intergenic | 35.0% | |
| AGACAATAGCTAGCTAAAGT+TGG | + | chr1_2:53080618-53080637 | None:intergenic | 35.0% | |
| TGTTATGCAGCTGTTAGATT+CGG | + | chr1_2:53080653-53080672 | None:intergenic | 35.0% | |
| TTAATAACCTTTAGGCCTGA+AGG | - | chr1_2:53080721-53080740 | Msa0076760:intron | 35.0% | |
| GTACTGTTATGCATTCTACT+GGG | + | chr1_2:53080770-53080789 | None:intergenic | 35.0% | |
| AGTACTGTTATGCATTCTAC+TGG | + | chr1_2:53080771-53080790 | None:intergenic | 35.0% | |
| CCCAAAAGATAGTACCATAT+TGG | - | chr1_2:53080813-53080832 | Msa0076760:CDS | 35.0% | |
| TCTCTAAACATATCAGTCCT+GGG | + | chr1_2:53080845-53080864 | None:intergenic | 35.0% | |
| ATCTCTAAACATATCAGTCC+TGG | + | chr1_2:53080846-53080865 | None:intergenic | 35.0% | |
| AGGACTGATATGTTTAGAGA+TGG | - | chr1_2:53080845-53080864 | Msa0076760:CDS | 35.0% | |
| GGACTGATATGTTTAGAGAT+GGG | - | chr1_2:53080846-53080865 | Msa0076760:CDS | 35.0% | |
| ATACCATGACATATGACCTT+TGG | - | chr1_2:53080929-53080948 | Msa0076760:intron | 35.0% | |
| AAACCAAAGGTCATATGTCA+TGG | + | chr1_2:53080935-53080954 | None:intergenic | 35.0% | |
| ACTTTCGAATGTACTTCCAT+TGG | - | chr1_2:53080958-53080977 | Msa0076760:intron | 35.0% | |
| CTTTCGAATGTACTTCCATT+GGG | - | chr1_2:53080959-53080978 | Msa0076760:intron | 35.0% | |
| !! | CTTCCATTGGGTTGATAATA+AGG | - | chr1_2:53080971-53080990 | Msa0076760:intron | 35.0% |
| ACTCCTTATTATCAACCCAA+TGG | + | chr1_2:53080977-53080996 | None:intergenic | 35.0% | |
| !! | GTTGATAATAAGGAGTCACT+GGG | - | chr1_2:53080981-53081000 | Msa0076760:intron | 35.0% |
| !!! | GGTAAGCTAGATTGTTTTTG+TGG | + | chr1_2:53081016-53081035 | None:intergenic | 35.0% |
| CAGAAATAATGACAGGATCA+TGG | + | chr1_2:53081094-53081113 | None:intergenic | 35.0% | |
| !!! | TCTGTAATTTTGCTGTTCAG+TGG | - | chr1_2:53081235-53081254 | Msa0076760:intron | 35.0% |
| GCTGTTCAGTGGTATTATAT+AGG | - | chr1_2:53081246-53081265 | Msa0076760:intron | 35.0% | |
| ATACAAGTAGAACAGGACAA+AGG | + | chr1_2:53081281-53081300 | None:intergenic | 35.0% | |
| GTTCATGATACAAGTAGAAC+AGG | + | chr1_2:53081288-53081307 | None:intergenic | 35.0% | |
| TATTCGATTGAGTAACACTC+CGG | - | chr1_2:53081320-53081339 | Msa0076760:intron | 35.0% | |
| TAGAGAACAACCAAACACAT+CGG | + | chr1_2:53081346-53081365 | None:intergenic | 35.0% | |
| GGTTGAGACTGAAAATAATC+TGG | - | chr1_2:53081381-53081400 | Msa0076760:intron | 35.0% | |
| CTGAAAATAATCTGGATGTC+TGG | - | chr1_2:53081389-53081408 | Msa0076760:intron | 35.0% | |
| ! | CTGACGATATAACATGGTTT+TGG | + | chr1_2:53081537-53081556 | None:intergenic | 35.0% |
| AGTACTCTGACGATATAACA+TGG | + | chr1_2:53081543-53081562 | None:intergenic | 35.0% | |
| !! | TCTTTTTGGTAGGAAAATGG+TGG | + | chr1_2:53081835-53081854 | None:intergenic | 35.0% |
| !! | AGCTTCTTTGTCTTTTTGGT+AGG | + | chr1_2:53081845-53081864 | None:intergenic | 35.0% |
| ! | GAGAAGCTTCTTTGTCTTTT+TGG | + | chr1_2:53081849-53081868 | None:intergenic | 35.0% |
| GATGAACTGAAACAATGGTT+TGG | - | chr1_2:53081876-53081895 | Msa0076760:exon | 35.0% | |
| TGTGTAGAAACTAGAAAGCA+TGG | - | chr1_2:53081921-53081940 | Msa0076760:intron | 35.0% | |
| ! | GTGTAGAAACTAGAAAGCAT+GGG | - | chr1_2:53081922-53081941 | Msa0076760:intron | 35.0% |
| TGTCAAAGCACAAATGTTCT+TGG | - | chr1_2:53082157-53082176 | Msa0076760:five_prime_UTR | 35.0% | |
| AAAGCACAAATGTTCTTGGA+AGG | - | chr1_2:53082161-53082180 | Msa0076760:five_prime_UTR | 35.0% | |
| ACAAATGTTCTTGGAAGGAT+TGG | - | chr1_2:53082166-53082185 | Msa0076760:five_prime_UTR | 35.0% | |
| ! | AGCGCCAAATACACTTTTCT+AGG | - | chr1_2:53078234-53078253 | Msa0076760:three_prime_UTR | 40.0% |
| ! | GGTAAGATCTGAAATGCACA+TGG | + | chr1_2:53078300-53078319 | None:intergenic | 40.0% |
| !! | TGGAAATGGATGTTTTGGGT+TGG | - | chr1_2:53079070-53079089 | Msa0076760:intron | 40.0% |
| !!! | GATGTTTTGGGTTGGTTGTA+GGG | - | chr1_2:53079078-53079097 | Msa0076760:intron | 40.0% |
| TGGTCTTTCTCTTCTCTTTC+TGG | + | chr1_2:53079117-53079136 | None:intergenic | 40.0% | |
| ! | TTATGGGCTATGGCTACTTT+AGG | - | chr1_2:53079154-53079173 | Msa0076760:intron | 40.0% |
| CCAGGGAAGAAGGAAAAAAA+CGG | + | chr1_2:53079294-53079313 | None:intergenic | 40.0% | |
| TTCAAAATCACCAGGGAAGA+AGG | + | chr1_2:53079304-53079323 | None:intergenic | 40.0% | |
| GTCGACATTTCAAAATCACC+AGG | + | chr1_2:53079312-53079331 | None:intergenic | 40.0% | |
| AATACAATCAATCAGAGGGG+AGG | + | chr1_2:53079362-53079381 | None:intergenic | 40.0% | |
| ACCTTAGACTATCTTGCCAA+TGG | - | chr1_2:53079394-53079413 | Msa0076760:intron | 40.0% | |
| TCCATTGGCAAGATAGTCTA+AGG | + | chr1_2:53079398-53079417 | None:intergenic | 40.0% | |
| CACAGATGTTAGCATTCCAT+TGG | + | chr1_2:53079413-53079432 | None:intergenic | 40.0% | |
| TATCACCCTATCAGAAACCA+TGG | + | chr1_2:53079438-53079457 | None:intergenic | 40.0% | |
| GGATCTGTTAGAAACAGTGA+TGG | - | chr1_2:53079463-53079482 | Msa0076760:intron | 40.0% | |
| !! | GTTAGAAACAGTGATGGATC+TGG | - | chr1_2:53079469-53079488 | Msa0076760:intron | 40.0% |
| AGACAGAGAGATTGTTACCT+GGG | + | chr1_2:53079692-53079711 | None:intergenic | 40.0% | |
| TCACCGAACTCTTATCTGAT+TGG | - | chr1_2:53079913-53079932 | Msa0076760:intron | 40.0% | |
| TGGCCAATCAGATAAGAGTT+CGG | + | chr1_2:53079919-53079938 | None:intergenic | 40.0% | |
| ! | GTTTGAGATCGTGTATTTCC+TGG | - | chr1_2:53080062-53080081 | Msa0076760:intron | 40.0% |
| GTCGAGAAAAAAAAGTTCCC+TGG | + | chr1_2:53080157-53080176 | None:intergenic | 40.0% | |
| !!! | CGACCTCAAGATCTCTTTTT+TGG | - | chr1_2:53080173-53080192 | Msa0076760:intron | 40.0% |
| TGGCCAAAAAAGAGATCTTG+AGG | + | chr1_2:53080179-53080198 | None:intergenic | 40.0% | |
| TGAATGTTGTGGAGCAGAAT+GGG | + | chr1_2:53080236-53080255 | None:intergenic | 40.0% | |
| CAAACATTGGGTGAATGTTG+TGG | + | chr1_2:53080247-53080266 | None:intergenic | 40.0% | |
| TGCCGATACTCAAAACAGAA+TGG | + | chr1_2:53080318-53080337 | None:intergenic | 40.0% | |
| AACATGCCAAGAGTTACTCT+TGG | - | chr1_2:53080400-53080419 | Msa0076760:intron | 40.0% | |
| GTGAGAAGATTAGGGAAAAC+AGG | + | chr1_2:53080528-53080547 | None:intergenic | 40.0% | |
| GCAATATGGTACTATCCTTC+AGG | + | chr1_2:53080739-53080758 | None:intergenic | 40.0% | |
| !! | ATGGTACTATCTTTTGGGTC+TGG | + | chr1_2:53080811-53080830 | None:intergenic | 40.0% |
| TACCATATTGGAATTCACCC+AGG | - | chr1_2:53080825-53080844 | Msa0076760:CDS | 40.0% | |
| !! | GGTTGATAATAAGGAGTCAC+TGG | - | chr1_2:53080980-53080999 | Msa0076760:intron | 40.0% |
| !! | ATCCTGTCATTATTTCTGCC+TGG | - | chr1_2:53081096-53081115 | Msa0076760:intron | 40.0% |
| !! | ATGAAAATCAGAAGAGCACC+AGG | + | chr1_2:53081117-53081136 | None:intergenic | 40.0% |
| CTAAGTGTGACAAACAAGGT+GGG | + | chr1_2:53081188-53081207 | None:intergenic | 40.0% | |
| ACTAAGTGTGACAAACAAGG+TGG | + | chr1_2:53081189-53081208 | None:intergenic | 40.0% | |
| GGTACTAAGTGTGACAAACA+AGG | + | chr1_2:53081192-53081211 | None:intergenic | 40.0% | |
| GTGTTTGGTTGTTCTCTATC+TGG | - | chr1_2:53081348-53081367 | Msa0076760:intron | 40.0% | |
| TCTCTATCTGGCTAACTCTA+CGG | - | chr1_2:53081360-53081379 | Msa0076760:intron | 40.0% | |
| TGCAACACAATGAAAATGGC+AGG | + | chr1_2:53081806-53081825 | None:intergenic | 40.0% | |
| GAGGTGCAACACAATGAAAA+TGG | + | chr1_2:53081810-53081829 | None:intergenic | 40.0% | |
| TCTCATCATGACAAGTTGCA+TGG | + | chr1_2:53082009-53082028 | None:intergenic | 40.0% | |
| !!! | GTTTTAGGGTTTATGCGCCA+TGG | - | chr1_2:53078421-53078440 | Msa0076760:three_prime_UTR | 45.0% |
| !!! | GGATGTTTTGGGTTGGTTGT+AGG | - | chr1_2:53079077-53079096 | Msa0076760:intron | 45.0% |
| CTTGCTAGGTACACCTTAAG+TGG | + | chr1_2:53079199-53079218 | None:intergenic | 45.0% | |
| CACTTAAGGTGTACCTAGCA+AGG | - | chr1_2:53079197-53079216 | Msa0076760:intron | 45.0% | |
| TTACCTCTCTGAACCTTGCT+AGG | + | chr1_2:53079213-53079232 | None:intergenic | 45.0% | |
| !!! | CCGTTTTTTTCCTTCTTCCC+TGG | - | chr1_2:53079291-53079310 | Msa0076760:intron | 45.0% |
| TCGACGGATATCACAGTTAG+AGG | - | chr1_2:53079327-53079346 | Msa0076760:intron | 45.0% | |
| ATGCTAACATCTGTGAGCCA+TGG | - | chr1_2:53079418-53079437 | Msa0076760:intron | 45.0% | |
| TGTGAGCCATGGTTTCTGAT+AGG | - | chr1_2:53079429-53079448 | Msa0076760:intron | 45.0% | |
| GTGAGCCATGGTTTCTGATA+GGG | - | chr1_2:53079430-53079449 | Msa0076760:intron | 45.0% | |
| GAGACAGAGAGATTGTTACC+TGG | + | chr1_2:53079693-53079712 | None:intergenic | 45.0% | |
| AGTCGAAATAGATTGGGGAC+AGG | - | chr1_2:53079878-53079897 | Msa0076760:intron | 45.0% | |
| ! | GAACTCTTATCTGATTGGCC+AGG | - | chr1_2:53079918-53079937 | Msa0076760:intron | 45.0% |
| ATATGGGAAGATGAGTACCC+AGG | + | chr1_2:53080083-53080102 | None:intergenic | 45.0% | |
| GAGATAAAAACCCTGCATGC+AGG | + | chr1_2:53080123-53080142 | None:intergenic | 45.0% | |
| GAATGTTGTGGAGCAGAATG+GGG | + | chr1_2:53080235-53080254 | None:intergenic | 45.0% | |
| GTGAATGTTGTGGAGCAGAA+TGG | + | chr1_2:53080237-53080256 | None:intergenic | 45.0% | |
| CCAACTCCAAGAGTAACTCT+TGG | + | chr1_2:53080409-53080428 | None:intergenic | 45.0% | |
| CCAAGAGTTACTCTTGGAGT+TGG | - | chr1_2:53080406-53080425 | Msa0076760:intron | 45.0% | |
| GTACTATCCTTCAGGCCTAA+AGG | + | chr1_2:53080731-53080750 | None:intergenic | 45.0% | |
| !! | TATCTTTTGGGTCTGGTCTC+GGG | + | chr1_2:53080804-53080823 | None:intergenic | 45.0% |
| !! | CTATCTTTTGGGTCTGGTCT+CGG | + | chr1_2:53080805-53080824 | None:intergenic | 45.0% |
| GTCCTGGGTGAATTCCAATA+TGG | + | chr1_2:53080830-53080849 | None:intergenic | 45.0% | |
| GCATTTGCTCTCAAGCAACT+TGG | + | chr1_2:53081037-53081056 | None:intergenic | 45.0% | |
| GCTGAGTGGAGTTTAGTGAT+AGG | - | chr1_2:53081055-53081074 | Msa0076760:intron | 45.0% | |
| CACCAGGCAGAAATAATGAC+AGG | + | chr1_2:53081101-53081120 | None:intergenic | 45.0% | |
| ! | GAAGGCATAACCAGATGTTG+TGG | + | chr1_2:53081746-53081765 | None:intergenic | 45.0% |
| CACAATGAAAATGGCAGGTG+AGG | + | chr1_2:53081801-53081820 | None:intergenic | 45.0% | |
| ! | TGGTAGGAAAATGGTGGAAG+AGG | + | chr1_2:53081829-53081848 | None:intergenic | 45.0% |
| ! | ATGTTCTTGGAAGGATTGGC+AGG | - | chr1_2:53082170-53082189 | Msa0076760:five_prime_UTR | 45.0% |
| !! | TAAAAAAATAAAAAATACTA+TGG | + | chr1_2:53078686-53078705 | None:intergenic | 5.0% |
| !! | TTGGTTCTGTGCATCTGCCA+TGG | + | chr1_2:53078441-53078460 | None:intergenic | 50.0% |
| TCTCGTGGCTTTCTTCGCAT+TGG | + | chr1_2:53078460-53078479 | None:intergenic | 50.0% | |
| GTACCTAGCAAGGTTCAGAG+AGG | - | chr1_2:53079207-53079226 | Msa0076760:intron | 50.0% | |
| TCTGGTAGACGAGACCAAGT+TGG | - | chr1_2:53079487-53079506 | Msa0076760:intron | 50.0% | |
| TCCTCCAGGTCAAAATGCTC+AGG | - | chr1_2:53079513-53079532 | Msa0076760:intron | 50.0% | |
| !! | ACCTGAGCATTTTGACCTGG+AGG | + | chr1_2:53079517-53079536 | None:intergenic | 50.0% |
| !! | CACACCTGAGCATTTTGACC+TGG | + | chr1_2:53079520-53079539 | None:intergenic | 50.0% |
| AAAAACCCTGCATGCAGGAC+AGG | + | chr1_2:53080118-53080137 | None:intergenic | 50.0% | |
| TGCATTCTACTGGGTGCTCT+GGG | + | chr1_2:53080761-53080780 | None:intergenic | 50.0% | |
| ATGCATTCTACTGGGTGCTC+TGG | + | chr1_2:53080762-53080781 | None:intergenic | 50.0% | |
| !! | ATCTTTTGGGTCTGGTCTCG+GGG | + | chr1_2:53080803-53080822 | None:intergenic | 50.0% |
| ! | GTTTGAAGCCACCAATCACG+AGG | - | chr1_2:53080900-53080919 | Msa0076760:intron | 50.0% |
| ATCTCTAGCCTCGTGATTGG+TGG | + | chr1_2:53080911-53080930 | None:intergenic | 50.0% | |
| GGTATCTCTAGCCTCGTGAT+TGG | + | chr1_2:53080914-53080933 | None:intergenic | 50.0% | |
| GCTTGAGAGCAAATGCTGAG+TGG | - | chr1_2:53081041-53081060 | Msa0076760:intron | 50.0% | |
| GAACAACCAAACACATCGGC+CGG | + | chr1_2:53081342-53081361 | None:intergenic | 50.0% | |
| TGCGAAGAAAGCCACGAGAG+TGG | - | chr1_2:53078461-53078480 | Msa0076760:three_prime_UTR | 55.0% | |
| GAAGAAAGCCACGAGAGTGG+TGG | - | chr1_2:53078464-53078483 | Msa0076760:three_prime_UTR | 55.0% | |
| TCTGTTCACCACCACTCTCG+TGG | + | chr1_2:53078475-53078494 | None:intergenic | 55.0% | |
| GAAGCAGAAGAAGAGCCACG+TGG | + | chr1_2:53078500-53078519 | None:intergenic | 55.0% | |
| TGGAATTGGGTCTCACTCGC+TGG | + | chr1_2:53078660-53078679 | None:intergenic | 55.0% | |
| ! | GGTAGACGAGACCAAGTTGG+CGG | - | chr1_2:53079490-53079509 | Msa0076760:intron | 55.0% |
| ACTGTCCTGTCCTGCATGCA+GGG | - | chr1_2:53080110-53080129 | Msa0076760:intron | 55.0% | |
| TTGTGGAGCAGAATGGGGAC+TGG | + | chr1_2:53080230-53080249 | None:intergenic | 55.0% | |
| ! | ACTGGGTGCTCTGGGCAATA+TGG | + | chr1_2:53080753-53080772 | None:intergenic | 55.0% |
| AACACTCCGGCCGATGTGTT+TGG | - | chr1_2:53081333-53081352 | Msa0076760:intron | 55.0% | |
| GCAGGTGCATCCACAACATC+TGG | - | chr1_2:53081733-53081752 | Msa0076760:CDS | 55.0% | |
| GGTGGTGAACAGAGTCCACG+TGG | - | chr1_2:53078482-53078501 | Msa0076760:three_prime_UTR | 60.0% | |
| CACTGTCCTGTCCTGCATGC+AGG | - | chr1_2:53080109-53080128 | Msa0076760:intron | 60.0% | |
| ! | GGGACTGGTGGGGATGAGTT+TGG | + | chr1_2:53080215-53080234 | None:intergenic | 60.0% |
| ! | GAGCAGAATGGGGACTGGTG+GGG | + | chr1_2:53080225-53080244 | None:intergenic | 60.0% |
| ! | GGAGCAGAATGGGGACTGGT+GGG | + | chr1_2:53080226-53080245 | None:intergenic | 60.0% |
| TGGAGCAGAATGGGGACTGG+TGG | + | chr1_2:53080227-53080246 | None:intergenic | 60.0% | |
| ! | GACCAAGTTGGCGGTCCTCC+AGG | - | chr1_2:53079499-53079518 | Msa0076760:intron | 65.0% |
| GACCTGGAGGACCGCCAACT+TGG | + | chr1_2:53079504-53079523 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 53078127 | 53082202 | 53078127 | ID=Msa0076760;Name=Msa0076760 |
| chr1_2 | mRNA | 53078127 | 53082202 | 53078127 | ID=Msa0076760-mRNA-1;Parent=Msa0076760;Name=Msa0076760-mRNA-1;_AED=0.10;_eAED=0.10;_QI=147|0.8|0.83|1|0.8|0.66|6|418|174 |
| chr1_2 | exon | 53078127 | 53078592 | 53078127 | ID=Msa0076760-mRNA-1:exon:16411;Parent=Msa0076760-mRNA-1 |
| chr1_2 | exon | 53080636 | 53080674 | 53080636 | ID=Msa0076760-mRNA-1:exon:16410;Parent=Msa0076760-mRNA-1 |
| chr1_2 | exon | 53080795 | 53080878 | 53080795 | ID=Msa0076760-mRNA-1:exon:16409;Parent=Msa0076760-mRNA-1 |
| chr1_2 | exon | 53081101 | 53081230 | 53081101 | ID=Msa0076760-mRNA-1:exon:16408;Parent=Msa0076760-mRNA-1 |
| chr1_2 | exon | 53081666 | 53081907 | 53081666 | ID=Msa0076760-mRNA-1:exon:16407;Parent=Msa0076760-mRNA-1 |
| chr1_2 | exon | 53082074 | 53082202 | 53082074 | ID=Msa0076760-mRNA-1:exon:16406;Parent=Msa0076760-mRNA-1 |
| chr1_2 | five_prime_UTR | 53082074 | 53082202 | 53082074 | ID=Msa0076760-mRNA-1:five_prime_utr;Parent=Msa0076760-mRNA-1 |
| chr1_2 | five_prime_UTR | 53081890 | 53081907 | 53081890 | ID=Msa0076760-mRNA-1:five_prime_utr;Parent=Msa0076760-mRNA-1 |
| chr1_2 | CDS | 53081666 | 53081889 | 53081666 | ID=Msa0076760-mRNA-1:cds;Parent=Msa0076760-mRNA-1 |
| chr1_2 | CDS | 53081101 | 53081230 | 53081101 | ID=Msa0076760-mRNA-1:cds;Parent=Msa0076760-mRNA-1 |
| chr1_2 | CDS | 53080795 | 53080878 | 53080795 | ID=Msa0076760-mRNA-1:cds;Parent=Msa0076760-mRNA-1 |
| chr1_2 | CDS | 53080636 | 53080674 | 53080636 | ID=Msa0076760-mRNA-1:cds;Parent=Msa0076760-mRNA-1 |
| chr1_2 | CDS | 53078545 | 53078592 | 53078545 | ID=Msa0076760-mRNA-1:cds;Parent=Msa0076760-mRNA-1 |
| chr1_2 | three_prime_UTR | 53078127 | 53078544 | 53078127 | ID=Msa0076760-mRNA-1:three_prime_utr;Parent=Msa0076760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
