AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1369190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1369190 MtrunA17_Chr8g0384331 88.112 143 0 1 1 126 1 143 1.05e-84 243
Msa1369190 MtrunA17_Chr5g0399411 83.200 125 4 1 19 126 18 142 4.20e-70 206
Msa1369190 MtrunA17_Chr4g0001281 79.365 126 9 1 18 126 19 144 1.01e-66 198
Msa1369190 MtrunA17_Chr4g0037191 67.857 56 17 1 1 55 51 106 7.63e-18 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1369190 AT2G32060.3 64.800 125 26 2 19 126 21 144 1.25e-51 160
Msa1369190 AT2G32060.1 64.800 125 26 2 19 126 21 144 1.25e-51 160
Msa1369190 AT2G32060.2 64.800 125 26 2 19 126 21 144 1.25e-51 160
Msa1369190 AT1G15930.1 62.400 125 29 2 19 126 21 144 4.43e-48 151
Msa1369190 AT1G15930.2 62.400 125 29 2 19 126 21 144 4.43e-48 151

Find 60 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCAACAAATTCAAGTAAA+AGG 0.275254 tig0018755:+132307 None:intergenic
TTCACCAACTTGACGTAATC+AGG 0.299059 tig0018755:+133419 None:intergenic
GTTGCTGCAGCTGGAATTCC+AGG 0.331115 tig0018755:-133590 Msa1369190:CDS
AATCAACTTGCAATTATGTC+TGG 0.359633 tig0018755:-134208 Msa1369190:exon
GGAGGGAGTACGTAAACATT+AGG 0.370449 tig0018755:-134473 Msa1369190:five_prime_UTR
CACAATCGTCTTCAACAAAA+AGG 0.387726 tig0018755:-134337 Msa1369190:intron
ATTGAGACTGCCACAAATCT+AGG 0.388989 tig0018755:+132430 None:intergenic
AAGCTATAAACCCTAATGTT+TGG 0.397206 tig0018755:+134430 None:intergenic
CCTATGCAGATAATCCAAAA+AGG 0.401269 tig0018755:+132369 None:intergenic
ATTCCAGCTGCAGCAACAAC+TGG 0.406602 tig0018755:+133596 None:intergenic
ATAATATCCATTGGCTCCCC+TGG 0.419454 tig0018755:+133572 None:intergenic
CCACTAGCATTTGCAGAACT+AGG 0.423529 tig0018755:-134371 Msa1369190:five_prime_UTR
GAGCCAGTTGTTGCTGCAGC+TGG 0.425162 tig0018755:-133599 Msa1369190:CDS
TTGAGAAAGTCACGCGCTTA+TGG 0.428624 tig0018755:-133530 Msa1369190:CDS
AAATGCTAGTGGTGCGAAAT+CGG 0.431029 tig0018755:+134382 None:intergenic
GACACTGTGTTCAGCACAAA+GGG 0.447539 tig0018755:+133394 None:intergenic
TTTGCTAAACGTACCCGTAC+CGG 0.453084 tig0018755:-132138 Msa1369190:three_prime_UTR
GGAAAAGCTAGGAAGGTAAC+TGG 0.463250 tig0018755:-132630 Msa1369190:CDS
TACGGGTACGTTTAGCAAAA+CGG 0.479205 tig0018755:+132142 None:intergenic
GTAAAAGGTGGCAATGAGAA+TGG 0.480235 tig0018755:+132322 None:intergenic
GTTTAAAAGCTCTGAAGCAC+GGG 0.489980 tig0018755:-132169 Msa1369190:three_prime_UTR
TTGCTAAACGTACCCGTACC+GGG 0.493014 tig0018755:-132137 Msa1369190:three_prime_UTR
GAGGGAGTACGTAAACATTA+GGG 0.495148 tig0018755:-134472 Msa1369190:five_prime_UTR
CACTAGCATTTGCAGAACTA+GGG 0.506126 tig0018755:-134370 Msa1369190:five_prime_UTR
CAAGAGTATAAATAGCGAAT+GGG 0.510869 tig0018755:+132267 None:intergenic
TAAAAGGTGGCAATGAGAAT+GGG 0.514023 tig0018755:+132323 None:intergenic
TGTTTAAAAGCTCTGAAGCA+CGG 0.517858 tig0018755:-132170 Msa1369190:three_prime_UTR
TTGCAATATGCCTAGATTTG+TGG 0.518317 tig0018755:-132440 Msa1369190:three_prime_UTR
TCAAGAGTATAAATAGCGAA+TGG 0.524937 tig0018755:+132266 None:intergenic
TTGCTCCTGTGTGGTTGTCA+AGG 0.525394 tig0018755:-132607 Msa1369190:intron
ATTCGCTATTTATACTCTTG+AGG 0.527975 tig0018755:-132264 Msa1369190:three_prime_UTR
TTGCTGCAGCTGGAATTCCA+GGG 0.537879 tig0018755:-133589 Msa1369190:CDS
ATCAACTTGCAATTATGTCT+GGG 0.539041 tig0018755:-134207 Msa1369190:intron
CGTAAACATTAGGGACAGTT+GGG 0.543095 tig0018755:-134463 Msa1369190:five_prime_UTR
AATTTGCTTATAATAGTGAC+CGG 0.545137 tig0018755:-134494 Msa1369190:five_prime_UTR
TAATGTTTACGTACTCCCTC+CGG 0.552360 tig0018755:+134475 None:intergenic
ACGTAAACATTAGGGACAGT+TGG 0.560859 tig0018755:-134464 Msa1369190:five_prime_UTR
TTGTGCAAAATTGATTCAGA+AGG 0.565495 tig0018755:-132651 Msa1369190:CDS
ACTGCAGTCATAATATCCAT+TGG 0.568889 tig0018755:+133563 None:intergenic
ACCCGTACCGGGTACTGCGC+GGG 0.571402 tig0018755:-132126 Msa1369190:three_prime_UTR
TGCTGCAGCTGGAATTCCAG+GGG 0.575795 tig0018755:-133588 Msa1369190:CDS
TACCCGCGCAGTACCCGGTA+CGG 0.578693 tig0018755:+132124 None:intergenic
TTGATTCAGAAGGAAAAGCT+AGG 0.578774 tig0018755:-132641 Msa1369190:CDS
TGCTTATAATAGTGACCGGA+GGG 0.583543 tig0018755:-134490 Msa1369190:five_prime_UTR
ACCAGTACCCGCGCAGTACC+CGG 0.587354 tig0018755:+132119 None:intergenic
ACAGCTCTGTGTTCTTGCTG+AGG 0.587565 tig0018755:-133453 Msa1369190:CDS
CCAACCTGATTACGTCAAGT+TGG 0.591510 tig0018755:-133423 Msa1369190:CDS
TTCAGAAGGAAAAGCTAGGA+AGG 0.596975 tig0018755:-132637 Msa1369190:CDS
ACCCGCGCAGTACCCGGTAC+GGG 0.597432 tig0018755:+132125 None:intergenic
TGGAATTCCAGGGGAGCCAA+TGG 0.602144 tig0018755:-133579 Msa1369190:CDS
CCTAGTTCTGCAAATGCTAG+TGG 0.603619 tig0018755:+134371 None:intergenic
AGAAAGTCACGCGCTTATGG+TGG 0.613205 tig0018755:-133527 Msa1369190:CDS
CCAACTTGACGTAATCAGGT+TGG 0.614249 tig0018755:+133423 None:intergenic
CAACAAATTCAAGTAAAAGG+TGG 0.621863 tig0018755:+132310 None:intergenic
TGACACTGTGTTCAGCACAA+AGG 0.628583 tig0018755:+133393 None:intergenic
GCTTATGGTGGTCTTGCACG+TGG 0.635715 tig0018755:-133515 Msa1369190:CDS
TTGCTTATAATAGTGACCGG+AGG 0.637006 tig0018755:-134491 Msa1369190:five_prime_UTR
GGTAACTGGTTGCTCCTGTG+TGG 0.641819 tig0018755:-132616 Msa1369190:CDS
TACCCGTACCGGGTACTGCG+CGG 0.657036 tig0018755:-132127 Msa1369190:three_prime_UTR
ACATACCTTGACAACCACAC+AGG 0.682837 tig0018755:+132602 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATAATAACTTTTTGATCT+GGG + tig0018755:132818-132837 None:intergenic 15.0%
!!! TTTATAATAACTTTTTGATC+TGG + tig0018755:132819-132838 None:intergenic 15.0%
!! AAATATATAATTGAGAATTG+TGG + tig0018755:133369-133388 None:intergenic 15.0%
!!! TCATGAATTACTTTAAAATA+AGG - tig0018755:133399-133418 Msa1369190:CDS 15.0%
!!! CATGAATTACTTTAAAATAA+GGG - tig0018755:133400-133419 Msa1369190:CDS 15.0%
!! TATAAAATGTTATTGCTTAT+TGG + tig0018755:133512-133531 None:intergenic 15.0%
!! CATATAGATTAAAATAAATG+AGG + tig0018755:133851-133870 None:intergenic 15.0%
!!! TTAACTATTTTCATTTTTGT+AGG - tig0018755:134107-134126 Msa1369190:intron 15.0%
!!! TTATAATAACTTTTTGATCT+GGG + tig0018755:132818-132837 None:intergenic 15.0%
!!! TTTATAATAACTTTTTGATC+TGG + tig0018755:132819-132838 None:intergenic 15.0%
!! AAATATATAATTGAGAATTG+TGG + tig0018755:133369-133388 None:intergenic 15.0%
!!! TCATGAATTACTTTAAAATA+AGG - tig0018755:133399-133418 Msa1369190:CDS 15.0%
!!! CATGAATTACTTTAAAATAA+GGG - tig0018755:133400-133419 Msa1369190:CDS 15.0%
!! TATAAAATGTTATTGCTTAT+TGG + tig0018755:133512-133531 None:intergenic 15.0%
!! CATATAGATTAAAATAAATG+AGG + tig0018755:133851-133870 None:intergenic 15.0%
!!! TTAACTATTTTCATTTTTGT+AGG - tig0018755:134107-134126 Msa1369190:intron 15.0%
!! TAAAAAAACAAAGTGAGATT+TGG + tig0018755:132363-132382 None:intergenic 20.0%
!! ATTGATTATGAGGATAATTA+TGG - tig0018755:132766-132785 Msa1369190:intron 20.0%
!!! AATTACTTTAAAATAAGGGT+GGG - tig0018755:133404-133423 Msa1369190:CDS 20.0%
!!! ATTTGCCTTTTGTTTTATAT+TGG - tig0018755:133753-133772 Msa1369190:intron 20.0%
!! CAAAACCAATATAAAACAAA+AGG + tig0018755:133761-133780 None:intergenic 20.0%
!! AATAGTTAAGCATACATAAA+CGG + tig0018755:134096-134115 None:intergenic 20.0%
!!! TTTTCATTTTTGTAGGATTT+CGG - tig0018755:134114-134133 Msa1369190:intron 20.0%
!!! CTAGCAGAAATATAAATTTT+AGG - tig0018755:134429-134448 Msa1369190:five_prime_UTR 20.0%
!! TAAAAAAACAAAGTGAGATT+TGG + tig0018755:132363-132382 None:intergenic 20.0%
!! ATTGATTATGAGGATAATTA+TGG - tig0018755:132766-132785 Msa1369190:intron 20.0%
!!! AATTACTTTAAAATAAGGGT+GGG - tig0018755:133404-133423 Msa1369190:CDS 20.0%
!!! ATTTGCCTTTTGTTTTATAT+TGG - tig0018755:133753-133772 Msa1369190:intron 20.0%
!! CAAAACCAATATAAAACAAA+AGG + tig0018755:133761-133780 None:intergenic 20.0%
!! AATAGTTAAGCATACATAAA+CGG + tig0018755:134096-134115 None:intergenic 20.0%
!!! TTTTCATTTTTGTAGGATTT+CGG - tig0018755:134114-134133 Msa1369190:intron 20.0%
!!! CTAGCAGAAATATAAATTTT+AGG - tig0018755:134429-134448 Msa1369190:five_prime_UTR 20.0%
!! AATTTGCTTATAATAGTGAC+CGG - tig0018755:132136-132155 Msa1369190:three_prime_UTR 25.0%
!!! AGTACTGATATTGAAATAGT+TGG - tig0018755:132610-132629 Msa1369190:CDS 25.0%
! ACAAAAAGTTTCTCTATAGT+CGG + tig0018755:132901-132920 None:intergenic 25.0%
! CTATGTTTATAGTAATGCAA+GGG + tig0018755:133317-133336 None:intergenic 25.0%
! TCTATGTTTATAGTAATGCA+AGG + tig0018755:133318-133337 None:intergenic 25.0%
! TCAAATATGTCATAAGGAAA+TGG + tig0018755:133346-133365 None:intergenic 25.0%
!!! GAATTACTTTAAAATAAGGG+TGG - tig0018755:133403-133422 Msa1369190:CDS 25.0%
! GACAATAACTTCTGAATTTA+AGG + tig0018755:133886-133905 None:intergenic 25.0%
! AAATTCAGAAGTTATTGTCT+TGG - tig0018755:133887-133906 Msa1369190:intron 25.0%
! TCTCAACAAATTCAAGTAAA+AGG + tig0018755:134326-134345 None:intergenic 25.0%
!! AATTTGCTTATAATAGTGAC+CGG - tig0018755:132136-132155 Msa1369190:three_prime_UTR 25.0%
!!! AGTACTGATATTGAAATAGT+TGG - tig0018755:132610-132629 Msa1369190:CDS 25.0%
! ACAAAAAGTTTCTCTATAGT+CGG + tig0018755:132901-132920 None:intergenic 25.0%
! CTATGTTTATAGTAATGCAA+GGG + tig0018755:133317-133336 None:intergenic 25.0%
! TCTATGTTTATAGTAATGCA+AGG + tig0018755:133318-133337 None:intergenic 25.0%
! TCAAATATGTCATAAGGAAA+TGG + tig0018755:133346-133365 None:intergenic 25.0%
!!! GAATTACTTTAAAATAAGGG+TGG - tig0018755:133403-133422 Msa1369190:CDS 25.0%
! GACAATAACTTCTGAATTTA+AGG + tig0018755:133886-133905 None:intergenic 25.0%
! AAATTCAGAAGTTATTGTCT+TGG - tig0018755:133887-133906 Msa1369190:intron 25.0%
! TCTCAACAAATTCAAGTAAA+AGG + tig0018755:134326-134345 None:intergenic 25.0%
AAGCTATAAACCCTAATGTT+TGG + tig0018755:132203-132222 None:intergenic 30.0%
!!! AATGTTTGTTTTGTGCAGAA+AGG - tig0018755:132382-132401 Msa1369190:three_prime_UTR 30.0%
AATCAACTTGCAATTATGTC+TGG - tig0018755:132422-132441 Msa1369190:three_prime_UTR 30.0%
ATCAACTTGCAATTATGTCT+GGG - tig0018755:132423-132442 Msa1369190:three_prime_UTR 30.0%
! TGTGAGATTCTACTTGTTAA+TGG - tig0018755:132475-132494 Msa1369190:CDS 30.0%
TTTCTTATAGTTACTACCGA+GGG + tig0018755:132651-132670 None:intergenic 30.0%
ATTTCTTATAGTTACTACCG+AGG + tig0018755:132652-132671 None:intergenic 30.0%
!! AACTTTTTGATCTGGGATTA+AGG + tig0018755:132811-132830 None:intergenic 30.0%
TTGTGGTCAAATATGTCATA+AGG + tig0018755:133352-133371 None:intergenic 30.0%
CGGTTTCATTAATTGCTTAT+TGG + tig0018755:133485-133504 None:intergenic 30.0%
!! TGTACACTATTTCTATGGAT+TGG + tig0018755:133616-133635 None:intergenic 30.0%
!! AAGGTTGTACACTATTTCTA+TGG + tig0018755:133621-133640 None:intergenic 30.0%
TGTTGTTCAGTTATTGTTTC+TGG - tig0018755:133685-133704 Msa1369190:intron 30.0%
! AACTTCTGAATTTAAGGCAA+AGG + tig0018755:133880-133899 None:intergenic 30.0%
! TTGTGCAAAATTGATTCAGA+AGG - tig0018755:133979-133998 Msa1369190:intron 30.0%
GAATCCAAACATTTCTATTC+CGG + tig0018755:134061-134080 None:intergenic 30.0%
! CTTTTTGGATTATCTGCATA+GGG - tig0018755:134262-134281 Msa1369190:intron 30.0%
CAACAAATTCAAGTAAAAGG+TGG + tig0018755:134323-134342 None:intergenic 30.0%
! CAAGAGTATAAATAGCGAAT+GGG + tig0018755:134366-134385 None:intergenic 30.0%
! TCAAGAGTATAAATAGCGAA+TGG + tig0018755:134367-134386 None:intergenic 30.0%
ATTCGCTATTTATACTCTTG+AGG - tig0018755:134366-134385 Msa1369190:five_prime_UTR 30.0%
AAGCTATAAACCCTAATGTT+TGG + tig0018755:132203-132222 None:intergenic 30.0%
!!! AATGTTTGTTTTGTGCAGAA+AGG - tig0018755:132382-132401 Msa1369190:three_prime_UTR 30.0%
AATCAACTTGCAATTATGTC+TGG - tig0018755:132422-132441 Msa1369190:three_prime_UTR 30.0%
ATCAACTTGCAATTATGTCT+GGG - tig0018755:132423-132442 Msa1369190:three_prime_UTR 30.0%
! TGTGAGATTCTACTTGTTAA+TGG - tig0018755:132475-132494 Msa1369190:CDS 30.0%
TTTCTTATAGTTACTACCGA+GGG + tig0018755:132651-132670 None:intergenic 30.0%
ATTTCTTATAGTTACTACCG+AGG + tig0018755:132652-132671 None:intergenic 30.0%
!! AACTTTTTGATCTGGGATTA+AGG + tig0018755:132811-132830 None:intergenic 30.0%
TTGTGGTCAAATATGTCATA+AGG + tig0018755:133352-133371 None:intergenic 30.0%
CGGTTTCATTAATTGCTTAT+TGG + tig0018755:133485-133504 None:intergenic 30.0%
!! TGTACACTATTTCTATGGAT+TGG + tig0018755:133616-133635 None:intergenic 30.0%
!! AAGGTTGTACACTATTTCTA+TGG + tig0018755:133621-133640 None:intergenic 30.0%
TGTTGTTCAGTTATTGTTTC+TGG - tig0018755:133685-133704 Msa1369190:intron 30.0%
! AACTTCTGAATTTAAGGCAA+AGG + tig0018755:133880-133899 None:intergenic 30.0%
! TTGTGCAAAATTGATTCAGA+AGG - tig0018755:133979-133998 Msa1369190:intron 30.0%
GAATCCAAACATTTCTATTC+CGG + tig0018755:134061-134080 None:intergenic 30.0%
! CTTTTTGGATTATCTGCATA+GGG - tig0018755:134262-134281 Msa1369190:intron 30.0%
CAACAAATTCAAGTAAAAGG+TGG + tig0018755:134323-134342 None:intergenic 30.0%
! CAAGAGTATAAATAGCGAAT+GGG + tig0018755:134366-134385 None:intergenic 30.0%
! TCAAGAGTATAAATAGCGAA+TGG + tig0018755:134367-134386 None:intergenic 30.0%
ATTCGCTATTTATACTCTTG+AGG - tig0018755:134366-134385 Msa1369190:five_prime_UTR 30.0%
! ACTTTTCACGCCAAACATTA+GGG - tig0018755:132190-132209 Msa1369190:three_prime_UTR 35.0%
! ATTTGCAGAACTAGGGTTTT+CGG - tig0018755:132267-132286 Msa1369190:three_prime_UTR 35.0%
CACAATCGTCTTCAACAAAA+AGG - tig0018755:132293-132312 Msa1369190:three_prime_UTR 35.0%
AAGAGGGATTGATTAAGAGA+AGG + tig0018755:132328-132347 None:intergenic 35.0%
! ACAAAGTGAGATTTGGTTGT+GGG + tig0018755:132356-132375 None:intergenic 35.0%
! AACAAAGTGAGATTTGGTTG+TGG + tig0018755:132357-132376 None:intergenic 35.0%
ACAAGTAGAATCTCACAAAC+AGG + tig0018755:132472-132491 None:intergenic 35.0%
! CATTGCGATCATTGATTATG+AGG - tig0018755:132756-132775 Msa1369190:intron 35.0%
ATGGTCAAATGAAGCTAATG+AGG - tig0018755:132785-132804 Msa1369190:intron 35.0%
ACTGCAGTCATAATATCCAT+TGG + tig0018755:133070-133089 None:intergenic 35.0%
! TGTTATTGCTTATTGGTGCT+CGG + tig0018755:133505-133524 None:intergenic 35.0%
TCATTTCATGCATCACAGTT+AGG + tig0018755:133570-133589 None:intergenic 35.0%
!! ACACTATTTCTATGGATTGG+AGG + tig0018755:133613-133632 None:intergenic 35.0%
!! ATTGTTTCTGGTGTATTCCT+TGG - tig0018755:133697-133716 Msa1369190:intron 35.0%
!! TTGTTTCTGGTGTATTCCTT+GGG - tig0018755:133698-133717 Msa1369190:intron 35.0%
! AATTTTGCACAACTGCATGA+AGG + tig0018755:133971-133990 None:intergenic 35.0%
TTGATTCAGAAGGAAAAGCT+AGG - tig0018755:133989-134008 Msa1369190:intron 35.0%
! GTCAAGGTATGTTTTTCATC+CGG - tig0018755:134039-134058 Msa1369190:intron 35.0%
TCATCCGGAATAGAAATGTT+TGG - tig0018755:134054-134073 Msa1369190:intron 35.0%
TTGCAATATGCCTAGATTTG+TGG - tig0018755:134190-134209 Msa1369190:intron 35.0%
CCTATGCAGATAATCCAAAA+AGG + tig0018755:134264-134283 None:intergenic 35.0%
! CCTTTTTGGATTATCTGCAT+AGG - tig0018755:134261-134280 Msa1369190:intron 35.0%
! TATCTGCATAGGGATTTTGA+TGG - tig0018755:134272-134291 Msa1369190:intron 35.0%
TAAAAGGTGGCAATGAGAAT+GGG + tig0018755:134310-134329 None:intergenic 35.0%
!! TGTTTAAAAGCTCTGAAGCA+CGG - tig0018755:134460-134479 Msa1369190:five_prime_UTR 35.0%
! ACTTTTCACGCCAAACATTA+GGG - tig0018755:132190-132209 Msa1369190:three_prime_UTR 35.0%
! ATTTGCAGAACTAGGGTTTT+CGG - tig0018755:132267-132286 Msa1369190:three_prime_UTR 35.0%
CACAATCGTCTTCAACAAAA+AGG - tig0018755:132293-132312 Msa1369190:three_prime_UTR 35.0%
AAGAGGGATTGATTAAGAGA+AGG + tig0018755:132328-132347 None:intergenic 35.0%
! ACAAAGTGAGATTTGGTTGT+GGG + tig0018755:132356-132375 None:intergenic 35.0%
! AACAAAGTGAGATTTGGTTG+TGG + tig0018755:132357-132376 None:intergenic 35.0%
ACAAGTAGAATCTCACAAAC+AGG + tig0018755:132472-132491 None:intergenic 35.0%
! CATTGCGATCATTGATTATG+AGG - tig0018755:132756-132775 Msa1369190:intron 35.0%
ATGGTCAAATGAAGCTAATG+AGG - tig0018755:132785-132804 Msa1369190:intron 35.0%
ACTGCAGTCATAATATCCAT+TGG + tig0018755:133070-133089 None:intergenic 35.0%
! TGTTATTGCTTATTGGTGCT+CGG + tig0018755:133505-133524 None:intergenic 35.0%
TCATTTCATGCATCACAGTT+AGG + tig0018755:133570-133589 None:intergenic 35.0%
!! ACACTATTTCTATGGATTGG+AGG + tig0018755:133613-133632 None:intergenic 35.0%
!! ATTGTTTCTGGTGTATTCCT+TGG - tig0018755:133697-133716 Msa1369190:intron 35.0%
!! TTGTTTCTGGTGTATTCCTT+GGG - tig0018755:133698-133717 Msa1369190:intron 35.0%
! AATTTTGCACAACTGCATGA+AGG + tig0018755:133971-133990 None:intergenic 35.0%
TTGATTCAGAAGGAAAAGCT+AGG - tig0018755:133989-134008 Msa1369190:intron 35.0%
! GTCAAGGTATGTTTTTCATC+CGG - tig0018755:134039-134058 Msa1369190:intron 35.0%
TCATCCGGAATAGAAATGTT+TGG - tig0018755:134054-134073 Msa1369190:intron 35.0%
TTGCAATATGCCTAGATTTG+TGG - tig0018755:134190-134209 Msa1369190:intron 35.0%
CCTATGCAGATAATCCAAAA+AGG + tig0018755:134264-134283 None:intergenic 35.0%
! CCTTTTTGGATTATCTGCAT+AGG - tig0018755:134261-134280 Msa1369190:intron 35.0%
! TATCTGCATAGGGATTTTGA+TGG - tig0018755:134272-134291 Msa1369190:intron 35.0%
TAAAAGGTGGCAATGAGAAT+GGG + tig0018755:134310-134329 None:intergenic 35.0%
!! TGTTTAAAAGCTCTGAAGCA+CGG - tig0018755:134460-134479 Msa1369190:five_prime_UTR 35.0%
TTGCTTATAATAGTGACCGG+AGG - tig0018755:132139-132158 Msa1369190:three_prime_UTR 40.0%
TGCTTATAATAGTGACCGGA+GGG - tig0018755:132140-132159 Msa1369190:three_prime_UTR 40.0%
TAATGTTTACGTACTCCCTC+CGG + tig0018755:132158-132177 None:intergenic 40.0%
! GAGGGAGTACGTAAACATTA+GGG - tig0018755:132158-132177 Msa1369190:three_prime_UTR 40.0%
ACGTAAACATTAGGGACAGT+TGG - tig0018755:132166-132185 Msa1369190:three_prime_UTR 40.0%
CGTAAACATTAGGGACAGTT+GGG - tig0018755:132167-132186 Msa1369190:three_prime_UTR 40.0%
! GACTTTTCACGCCAAACATT+AGG - tig0018755:132189-132208 Msa1369190:three_prime_UTR 40.0%
AAATGCTAGTGGTGCGAAAT+CGG + tig0018755:132251-132270 None:intergenic 40.0%
CACTAGCATTTGCAGAACTA+GGG - tig0018755:132260-132279 Msa1369190:three_prime_UTR 40.0%
AAAAACTCAAGACGCACACA+TGG + tig0018755:132938-132957 None:intergenic 40.0%
TTCACCAACTTGACGTAATC+AGG + tig0018755:133214-133233 None:intergenic 40.0%
ATTGGCACCTCTCATGATTA+GGG + tig0018755:133467-133486 None:intergenic 40.0%
TATTGGCACCTCTCATGATT+AGG + tig0018755:133468-133487 None:intergenic 40.0%
TTTCATGCATCACAGTTAGG+AGG + tig0018755:133567-133586 None:intergenic 40.0%
CAACCTTTGAATGTCAAGAG+CGG - tig0018755:133634-133653 Msa1369190:intron 40.0%
TTCAGAAGGAAAAGCTAGGA+AGG - tig0018755:133993-134012 Msa1369190:intron 40.0%
! ATTTTTGTAGGATTTCGGCG+AGG - tig0018755:134119-134138 Msa1369190:intron 40.0%
ATTGAGACTGCCACAAATCT+AGG + tig0018755:134203-134222 None:intergenic 40.0%
! GATTTTTGCCTTCGCCTTTT+TGG - tig0018755:134247-134266 Msa1369190:intron 40.0%
CAGATAATCCAAAAAGGCGA+AGG + tig0018755:134258-134277 None:intergenic 40.0%
GTAAAAGGTGGCAATGAGAA+TGG + tig0018755:134311-134330 None:intergenic 40.0%
!! GTTTAAAAGCTCTGAAGCAC+GGG - tig0018755:134461-134480 Msa1369190:five_prime_UTR 40.0%
TACGGGTACGTTTAGCAAAA+CGG + tig0018755:134491-134510 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG - tig0018755:132139-132158 Msa1369190:three_prime_UTR 40.0%
TGCTTATAATAGTGACCGGA+GGG - tig0018755:132140-132159 Msa1369190:three_prime_UTR 40.0%
TAATGTTTACGTACTCCCTC+CGG + tig0018755:132158-132177 None:intergenic 40.0%
! GAGGGAGTACGTAAACATTA+GGG - tig0018755:132158-132177 Msa1369190:three_prime_UTR 40.0%
ACGTAAACATTAGGGACAGT+TGG - tig0018755:132166-132185 Msa1369190:three_prime_UTR 40.0%
CGTAAACATTAGGGACAGTT+GGG - tig0018755:132167-132186 Msa1369190:three_prime_UTR 40.0%
! GACTTTTCACGCCAAACATT+AGG - tig0018755:132189-132208 Msa1369190:three_prime_UTR 40.0%
AAATGCTAGTGGTGCGAAAT+CGG + tig0018755:132251-132270 None:intergenic 40.0%
CACTAGCATTTGCAGAACTA+GGG - tig0018755:132260-132279 Msa1369190:three_prime_UTR 40.0%
AAAAACTCAAGACGCACACA+TGG + tig0018755:132938-132957 None:intergenic 40.0%
TTCACCAACTTGACGTAATC+AGG + tig0018755:133214-133233 None:intergenic 40.0%
ATTGGCACCTCTCATGATTA+GGG + tig0018755:133467-133486 None:intergenic 40.0%
TATTGGCACCTCTCATGATT+AGG + tig0018755:133468-133487 None:intergenic 40.0%
TTTCATGCATCACAGTTAGG+AGG + tig0018755:133567-133586 None:intergenic 40.0%
CAACCTTTGAATGTCAAGAG+CGG - tig0018755:133634-133653 Msa1369190:intron 40.0%
TTCAGAAGGAAAAGCTAGGA+AGG - tig0018755:133993-134012 Msa1369190:intron 40.0%
! ATTTTTGTAGGATTTCGGCG+AGG - tig0018755:134119-134138 Msa1369190:intron 40.0%
ATTGAGACTGCCACAAATCT+AGG + tig0018755:134203-134222 None:intergenic 40.0%
! GATTTTTGCCTTCGCCTTTT+TGG - tig0018755:134247-134266 Msa1369190:intron 40.0%
CAGATAATCCAAAAAGGCGA+AGG + tig0018755:134258-134277 None:intergenic 40.0%
GTAAAAGGTGGCAATGAGAA+TGG + tig0018755:134311-134330 None:intergenic 40.0%
!! GTTTAAAAGCTCTGAAGCAC+GGG - tig0018755:134461-134480 Msa1369190:five_prime_UTR 40.0%
TACGGGTACGTTTAGCAAAA+CGG + tig0018755:134491-134510 None:intergenic 40.0%
! GGAGGGAGTACGTAAACATT+AGG - tig0018755:132157-132176 Msa1369190:three_prime_UTR 45.0%
!! CCTAGTTCTGCAAATGCTAG+TGG + tig0018755:132262-132281 None:intergenic 45.0%
CCACTAGCATTTGCAGAACT+AGG - tig0018755:132259-132278 Msa1369190:three_prime_UTR 45.0%
TTGGTTGTGGGTGATGAAGA+GGG + tig0018755:132344-132363 None:intergenic 45.0%
TTTGGTTGTGGGTGATGAAG+AGG + tig0018755:132345-132364 None:intergenic 45.0%
GATCTGATAGTCATAGCCCT+CGG - tig0018755:132632-132651 Msa1369190:CDS 45.0%
!! ATAATATCCATTGGCTCCCC+TGG + tig0018755:133061-133080 None:intergenic 45.0%
TTGAGAAAGTCACGCGCTTA+TGG - tig0018755:133100-133119 Msa1369190:intron 45.0%
CCAACTTGACGTAATCAGGT+TGG + tig0018755:133210-133229 None:intergenic 45.0%
CCAACCTGATTACGTCAAGT+TGG - tig0018755:133207-133226 Msa1369190:intron 45.0%
GACACTGTGTTCAGCACAAA+GGG + tig0018755:133239-133258 None:intergenic 45.0%
TGACACTGTGTTCAGCACAA+AGG + tig0018755:133240-133259 None:intergenic 45.0%
GTTCCAAATGCAAAGACCCT+TGG - tig0018755:133271-133290 Msa1369190:intron 45.0%
TCTCCAAGGGTCTTTGCATT+TGG + tig0018755:133277-133296 None:intergenic 45.0%
ATGCAAAGACCCTTGGAGAA+TGG - tig0018755:133278-133297 Msa1369190:intron 45.0%
TGCAAAGACCCTTGGAGAAT+GGG - tig0018755:133279-133298 Msa1369190:intron 45.0%
GATTTGCACCACGATGTTGA+GGG + tig0018755:133440-133459 None:intergenic 45.0%
ATCCTGACCCTAATCATGAG+AGG - tig0018755:133457-133476 Msa1369190:CDS 45.0%
AGAGAGGATACAGGGTAAGA+GGG + tig0018755:133817-133836 None:intergenic 45.0%
CAGAGTTCAGAGAGGATACA+GGG + tig0018755:133825-133844 None:intergenic 45.0%
ACAGAGTTCAGAGAGGATAC+AGG + tig0018755:133826-133845 None:intergenic 45.0%
TGAGGTTACAGAGTTCAGAG+AGG + tig0018755:133833-133852 None:intergenic 45.0%
GGAAAAGCTAGGAAGGTAAC+TGG - tig0018755:134000-134019 Msa1369190:intron 45.0%
ACATACCTTGACAACCACAC+AGG + tig0018755:134031-134050 None:intergenic 45.0%
AAGGCGAAGGCAAAAATCAC+AGG + tig0018755:134245-134264 None:intergenic 45.0%
TTTGCTAAACGTACCCGTAC+CGG - tig0018755:134492-134511 Msa1369190:five_prime_UTR 45.0%
! GGAGGGAGTACGTAAACATT+AGG - tig0018755:132157-132176 Msa1369190:three_prime_UTR 45.0%
!! CCTAGTTCTGCAAATGCTAG+TGG + tig0018755:132262-132281 None:intergenic 45.0%
CCACTAGCATTTGCAGAACT+AGG - tig0018755:132259-132278 Msa1369190:three_prime_UTR 45.0%
TTGGTTGTGGGTGATGAAGA+GGG + tig0018755:132344-132363 None:intergenic 45.0%
TTTGGTTGTGGGTGATGAAG+AGG + tig0018755:132345-132364 None:intergenic 45.0%
GATCTGATAGTCATAGCCCT+CGG - tig0018755:132632-132651 Msa1369190:CDS 45.0%
!! ATAATATCCATTGGCTCCCC+TGG + tig0018755:133061-133080 None:intergenic 45.0%
TTGAGAAAGTCACGCGCTTA+TGG - tig0018755:133100-133119 Msa1369190:intron 45.0%
CCAACTTGACGTAATCAGGT+TGG + tig0018755:133210-133229 None:intergenic 45.0%
CCAACCTGATTACGTCAAGT+TGG - tig0018755:133207-133226 Msa1369190:intron 45.0%
GACACTGTGTTCAGCACAAA+GGG + tig0018755:133239-133258 None:intergenic 45.0%
TGACACTGTGTTCAGCACAA+AGG + tig0018755:133240-133259 None:intergenic 45.0%
GTTCCAAATGCAAAGACCCT+TGG - tig0018755:133271-133290 Msa1369190:intron 45.0%
TCTCCAAGGGTCTTTGCATT+TGG + tig0018755:133277-133296 None:intergenic 45.0%
ATGCAAAGACCCTTGGAGAA+TGG - tig0018755:133278-133297 Msa1369190:intron 45.0%
TGCAAAGACCCTTGGAGAAT+GGG - tig0018755:133279-133298 Msa1369190:intron 45.0%
GATTTGCACCACGATGTTGA+GGG + tig0018755:133440-133459 None:intergenic 45.0%
ATCCTGACCCTAATCATGAG+AGG - tig0018755:133457-133476 Msa1369190:CDS 45.0%
AGAGAGGATACAGGGTAAGA+GGG + tig0018755:133817-133836 None:intergenic 45.0%
CAGAGTTCAGAGAGGATACA+GGG + tig0018755:133825-133844 None:intergenic 45.0%
ACAGAGTTCAGAGAGGATAC+AGG + tig0018755:133826-133845 None:intergenic 45.0%
TGAGGTTACAGAGTTCAGAG+AGG + tig0018755:133833-133852 None:intergenic 45.0%
GGAAAAGCTAGGAAGGTAAC+TGG - tig0018755:134000-134019 Msa1369190:intron 45.0%
ACATACCTTGACAACCACAC+AGG + tig0018755:134031-134050 None:intergenic 45.0%
AAGGCGAAGGCAAAAATCAC+AGG + tig0018755:134245-134264 None:intergenic 45.0%
TTTGCTAAACGTACCCGTAC+CGG - tig0018755:134492-134511 Msa1369190:five_prime_UTR 45.0%
!!! AAATTAAAAAATTTAATTTG+TGG - tig0018755:132730-132749 Msa1369190:intron 5.0%
!!! AAATTAAAAAATTTAATTTG+TGG - tig0018755:132730-132749 Msa1369190:intron 5.0%
! TGCAGAACTAGGGTTTTCGG+CGG - tig0018755:132270-132289 Msa1369190:three_prime_UTR 50.0%
TATAGTCGGCGAGATTCACG+TGG + tig0018755:132887-132906 None:intergenic 50.0%
ATTCCAGCTGCAGCAACAAC+TGG + tig0018755:133037-133056 None:intergenic 50.0%
TTGCTGCAGCTGGAATTCCA+GGG - tig0018755:133041-133060 Msa1369190:intron 50.0%
AGAAAGTCACGCGCTTATGG+TGG - tig0018755:133103-133122 Msa1369190:intron 50.0%
ACAGCTCTGTGTTCTTGCTG+AGG - tig0018755:133177-133196 Msa1369190:intron 50.0%
TACACCAGCCCATTCTCCAA+GGG + tig0018755:133290-133309 None:intergenic 50.0%
TTACACCAGCCCATTCTCCA+AGG + tig0018755:133291-133310 None:intergenic 50.0%
TGACATCTCCCTCAACATCG+TGG - tig0018755:133429-133448 Msa1369190:CDS 50.0%
GGATTTGCACCACGATGTTG+AGG + tig0018755:133441-133460 None:intergenic 50.0%
CACCTCTCATGATTAGGGTC+AGG + tig0018755:133462-133481 None:intergenic 50.0%
CCACCGCTCTTGACATTCAA+AGG + tig0018755:133640-133659 None:intergenic 50.0%
CCTTTGAATGTCAAGAGCGG+TGG - tig0018755:133637-133656 Msa1369190:intron 50.0%
TCTGGTGTATTCCTTGGGTC+TGG - tig0018755:133703-133722 Msa1369190:intron 50.0%
CTGGTGTATTCCTTGGGTCT+GGG - tig0018755:133704-133723 Msa1369190:intron 50.0%
TGGTGTATTCCTTGGGTCTG+GGG - tig0018755:133705-133724 Msa1369190:intron 50.0%
GAGAGGATACAGGGTAAGAG+GGG + tig0018755:133816-133835 None:intergenic 50.0%
CAGAGAGGATACAGGGTAAG+AGG + tig0018755:133818-133837 None:intergenic 50.0%
TTGCTCCTGTGTGGTTGTCA+AGG - tig0018755:134023-134042 Msa1369190:intron 50.0%
TTGCTAAACGTACCCGTACC+GGG - tig0018755:134493-134512 Msa1369190:five_prime_UTR 50.0%
! TGCAGAACTAGGGTTTTCGG+CGG - tig0018755:132270-132289 Msa1369190:three_prime_UTR 50.0%
TATAGTCGGCGAGATTCACG+TGG + tig0018755:132887-132906 None:intergenic 50.0%
ATTCCAGCTGCAGCAACAAC+TGG + tig0018755:133037-133056 None:intergenic 50.0%
TTGCTGCAGCTGGAATTCCA+GGG - tig0018755:133041-133060 Msa1369190:intron 50.0%
AGAAAGTCACGCGCTTATGG+TGG - tig0018755:133103-133122 Msa1369190:intron 50.0%
ACAGCTCTGTGTTCTTGCTG+AGG - tig0018755:133177-133196 Msa1369190:intron 50.0%
TACACCAGCCCATTCTCCAA+GGG + tig0018755:133290-133309 None:intergenic 50.0%
TTACACCAGCCCATTCTCCA+AGG + tig0018755:133291-133310 None:intergenic 50.0%
TGACATCTCCCTCAACATCG+TGG - tig0018755:133429-133448 Msa1369190:CDS 50.0%
GGATTTGCACCACGATGTTG+AGG + tig0018755:133441-133460 None:intergenic 50.0%
CACCTCTCATGATTAGGGTC+AGG + tig0018755:133462-133481 None:intergenic 50.0%
CCACCGCTCTTGACATTCAA+AGG + tig0018755:133640-133659 None:intergenic 50.0%
CCTTTGAATGTCAAGAGCGG+TGG - tig0018755:133637-133656 Msa1369190:intron 50.0%
TCTGGTGTATTCCTTGGGTC+TGG - tig0018755:133703-133722 Msa1369190:intron 50.0%
CTGGTGTATTCCTTGGGTCT+GGG - tig0018755:133704-133723 Msa1369190:intron 50.0%
TGGTGTATTCCTTGGGTCTG+GGG - tig0018755:133705-133724 Msa1369190:intron 50.0%
GAGAGGATACAGGGTAAGAG+GGG + tig0018755:133816-133835 None:intergenic 50.0%
CAGAGAGGATACAGGGTAAG+AGG + tig0018755:133818-133837 None:intergenic 50.0%
TTGCTCCTGTGTGGTTGTCA+AGG - tig0018755:134023-134042 Msa1369190:intron 50.0%
TTGCTAAACGTACCCGTACC+GGG - tig0018755:134493-134512 Msa1369190:five_prime_UTR 50.0%
GTTGCTGCAGCTGGAATTCC+AGG - tig0018755:133040-133059 Msa1369190:intron 55.0%
TGCTGCAGCTGGAATTCCAG+GGG - tig0018755:133042-133061 Msa1369190:intron 55.0%
TGGAATTCCAGGGGAGCCAA+TGG - tig0018755:133051-133070 Msa1369190:intron 55.0%
! GCTTATGGTGGTCTTGCACG+TGG - tig0018755:133115-133134 Msa1369190:intron 55.0%
AAGACCCTTGGAGAATGGGC+TGG - tig0018755:133283-133302 Msa1369190:intron 55.0%
TGTATTCCTTGGGTCTGGGG+AGG - tig0018755:133708-133727 Msa1369190:intron 55.0%
GGTAACTGGTTGCTCCTGTG+TGG - tig0018755:134014-134033 Msa1369190:intron 55.0%
GTTGCTGCAGCTGGAATTCC+AGG - tig0018755:133040-133059 Msa1369190:intron 55.0%
TGCTGCAGCTGGAATTCCAG+GGG - tig0018755:133042-133061 Msa1369190:intron 55.0%
TGGAATTCCAGGGGAGCCAA+TGG - tig0018755:133051-133070 Msa1369190:intron 55.0%
! GCTTATGGTGGTCTTGCACG+TGG - tig0018755:133115-133134 Msa1369190:intron 55.0%
AAGACCCTTGGAGAATGGGC+TGG - tig0018755:133283-133302 Msa1369190:intron 55.0%
TGTATTCCTTGGGTCTGGGG+AGG - tig0018755:133708-133727 Msa1369190:intron 55.0%
GGTAACTGGTTGCTCCTGTG+TGG - tig0018755:134014-134033 Msa1369190:intron 55.0%
GAGCCAGTTGTTGCTGCAGC+TGG - tig0018755:133031-133050 Msa1369190:intron 60.0%
GAGCCAGTTGTTGCTGCAGC+TGG - tig0018755:133031-133050 Msa1369190:intron 60.0%
TTCCTTGGGTCTGGGGAGGC+TGG - tig0018755:133712-133731 Msa1369190:intron 65.0%
AACCAGCCTCCCCAGACCCA+AGG + tig0018755:133717-133736 None:intergenic 65.0%
! TGGGTCTGGGGAGGCTGGTT+CGG - tig0018755:133717-133736 Msa1369190:intron 65.0%
! TACCCGTACCGGGTACTGCG+CGG - tig0018755:134503-134522 Msa1369190:five_prime_UTR 65.0%
TTCCTTGGGTCTGGGGAGGC+TGG - tig0018755:133712-133731 Msa1369190:intron 65.0%
AACCAGCCTCCCCAGACCCA+AGG + tig0018755:133717-133736 None:intergenic 65.0%
! TGGGTCTGGGGAGGCTGGTT+CGG - tig0018755:133717-133736 Msa1369190:intron 65.0%
! TACCCGTACCGGGTACTGCG+CGG - tig0018755:134503-134522 Msa1369190:five_prime_UTR 65.0%
! ACCCGTACCGGGTACTGCGC+GGG - tig0018755:134504-134523 Msa1369190:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
tig0018755 gene 132126 134526 132126 ID=Msa1369190;Name=Msa1369190
tig0018755 mRNA 132126 134526 132126 ID=Msa1369190-mRNA-1;Parent=Msa1369190;Name=Msa1369190-mRNA-1;_AED=0.07;_eAED=0.07;_QI=226|0.75|0.8|1|0.5|0.4|5|338|126
tig0018755 exon 132126 132523 132126 ID=Msa1369190-mRNA-1:exon:1025;Parent=Msa1369190-mRNA-1
tig0018755 exon 132608 132673 132608 ID=Msa1369190-mRNA-1:exon:1024;Parent=Msa1369190-mRNA-1
tig0018755 exon 133397 133643 133397 ID=Msa1369190-mRNA-1:exon:1023;Parent=Msa1369190-mRNA-1
tig0018755 exon 134208 134252 134208 ID=Msa1369190-mRNA-1:exon:1022;Parent=Msa1369190-mRNA-1
tig0018755 exon 134338 134526 134338 ID=Msa1369190-mRNA-1:exon:1021;Parent=Msa1369190-mRNA-1
tig0018755 five_prime_UTR 134338 134526 134338 ID=Msa1369190-mRNA-1:five_prime_utr;Parent=Msa1369190-mRNA-1
tig0018755 five_prime_UTR 134216 134252 134216 ID=Msa1369190-mRNA-1:five_prime_utr;Parent=Msa1369190-mRNA-1
tig0018755 CDS 134208 134215 134208 ID=Msa1369190-mRNA-1:cds;Parent=Msa1369190-mRNA-1
tig0018755 CDS 133397 133643 133397 ID=Msa1369190-mRNA-1:cds;Parent=Msa1369190-mRNA-1
tig0018755 CDS 132608 132673 132608 ID=Msa1369190-mRNA-1:cds;Parent=Msa1369190-mRNA-1
tig0018755 CDS 132464 132523 132464 ID=Msa1369190-mRNA-1:cds;Parent=Msa1369190-mRNA-1
tig0018755 three_prime_UTR 132126 132463 132126 ID=Msa1369190-mRNA-1:three_prime_utr;Parent=Msa1369190-mRNA-1
Gene Sequence

>Msa1369190

ATGTCTGGAGAAGAAGAAGTTGTTGTAGCTGAGCCAGTTGTTGCTGCAGCTGGAATTCCAGGGGAGCCAATGGATATTATGACTGCAGTTCAGCTTGTGTTGAGAAAGTCACGCGCTTATGGTGGTCTTGCACGTGGTCTTCATGAAAGTGCTAAAGTGATTGAGAAGCATGCTGCACAGCTCTGTGTTCTTGCTGAGGATTGTGACCAACCTGATTACGTCAAGTTGGTGAAAGCCCTTTGTGCTGAACACAGTTTGTGCAAAATTGATTCAGAAGGAAAAGCTAGGAAGGTAACTGGTTGCTCCTGTGTGGTTGTCAAGGATTTCGGCGAGGAACATGAAGCATACAACGTTGTTCTTCAGCACGTGAAATCTAACTGA

Protein sequence

>Msa1369190

MSGEEEVVVAEPVVAAAGIPGEPMDIMTAVQLVLRKSRAYGGLARGLHESAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHSLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSN*