Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169550 | XP_024636354.2 | 94.220 | 346 | 18 | 2 | 119 | 463 | 236 | 580 | 0.0 | 645 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169550 | sp|Q9LDD4|ARID2_ARATH | 38.393 | 336 | 192 | 9 | 137 | 463 | 239 | 568 | 7.57e-59 | 206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169550 | A0A396JPP3 | 93.931 | 346 | 18 | 3 | 119 | 463 | 236 | 579 | 0.0 | 639 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0129240 | Msa0169550 | 0.812699 | 3.718232e-51 | -8.615850e-47 |
| Msa0169550 | Msa0373930 | 0.814268 | 1.679907e-51 | -8.615850e-47 |
| Msa0169550 | Msa0715310 | 0.803013 | 4.268405e-49 | -8.615850e-47 |
| Msa0169550 | Msa1296880 | 0.808499 | 3.005753e-50 | -8.615850e-47 |
| Msa0169550 | Msa1357530 | 0.829949 | 3.864859e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169550 | MtrunA17_Chr1g0186281 | 93.931 | 346 | 18 | 3 | 119 | 463 | 236 | 579 | 0.0 | 639 |
| Msa0169550 | MtrunA17_Chr1g0186261 | 93.235 | 340 | 22 | 1 | 125 | 463 | 243 | 582 | 0.0 | 631 |
| Msa0169550 | MtrunA17_Chr1g0186191 | 88.385 | 353 | 24 | 4 | 125 | 463 | 240 | 589 | 0.0 | 619 |
| Msa0169550 | MtrunA17_Chr8g0387181 | 65.039 | 389 | 86 | 6 | 125 | 463 | 234 | 622 | 9.67e-164 | 476 |
| Msa0169550 | MtrunA17_Chr8g0387141 | 65.684 | 373 | 70 | 6 | 125 | 463 | 242 | 590 | 6.23e-158 | 460 |
| Msa0169550 | MtrunA17_Chr8g0387161 | 62.997 | 327 | 69 | 4 | 137 | 462 | 15 | 290 | 3.05e-132 | 384 |
| Msa0169550 | MtrunA17_Chr6g0479271 | 49.829 | 293 | 82 | 8 | 119 | 385 | 61 | 314 | 2.07e-57 | 192 |
| Msa0169550 | MtrunA17_Chr7g0248041 | 37.725 | 334 | 165 | 10 | 137 | 456 | 273 | 577 | 8.79e-56 | 195 |
| Msa0169550 | MtrunA17_Chr8g0348691 | 45.989 | 187 | 95 | 4 | 267 | 448 | 76 | 261 | 7.53e-48 | 165 |
| Msa0169550 | MtrunA17_Chr1g0186291 | 62.810 | 121 | 12 | 2 | 1 | 103 | 1 | 106 | 1.21e-42 | 147 |
| Msa0169550 | MtrunA17_Chr8g0387131 | 52.239 | 134 | 14 | 3 | 1 | 102 | 16 | 131 | 4.08e-32 | 120 |
| Msa0169550 | MtrunA17_Chr8g0348701 | 49.254 | 134 | 18 | 3 | 1 | 102 | 16 | 131 | 1.10e-30 | 117 |
| Msa0169550 | MtrunA17_Chr5g0420461 | 53.448 | 116 | 32 | 2 | 270 | 385 | 90 | 183 | 2.63e-30 | 116 |
| Msa0169550 | MtrunA17_Chr4g0059291 | 48.507 | 134 | 19 | 4 | 1 | 102 | 16 | 131 | 8.40e-27 | 106 |
| Msa0169550 | MtrunA17_Chr3g0086341 | 40.110 | 182 | 91 | 6 | 267 | 434 | 149 | 326 | 1.38e-26 | 112 |
| Msa0169550 | MtrunA17_Chr7g0241681 | 36.471 | 170 | 99 | 4 | 267 | 429 | 194 | 361 | 1.68e-25 | 107 |
| Msa0169550 | MtrunA17_Chr7g0241661 | 30.000 | 170 | 110 | 4 | 267 | 429 | 186 | 353 | 1.14e-16 | 81.3 |
| Msa0169550 | MtrunA17_Chr8g0387151 | 48.193 | 83 | 23 | 3 | 1 | 83 | 7 | 69 | 9.05e-16 | 72.0 |
| Msa0169550 | MtrunA17_Chr8g0387171 | 45.349 | 86 | 27 | 3 | 1 | 86 | 6 | 71 | 5.65e-13 | 64.3 |
| Msa0169550 | MtrunA17_Chr6g0479281 | 44.304 | 79 | 24 | 3 | 7 | 85 | 13 | 71 | 1.39e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169550 | AT4G11400.2 | 38.393 | 336 | 192 | 9 | 137 | 463 | 239 | 568 | 7.69e-60 | 206 |
| Msa0169550 | AT4G11400.1 | 38.393 | 336 | 192 | 9 | 137 | 463 | 239 | 568 | 7.69e-60 | 206 |
| Msa0169550 | AT2G46040.3 | 42.353 | 170 | 95 | 1 | 269 | 435 | 362 | 531 | 2.40e-37 | 144 |
| Msa0169550 | AT2G46040.1 | 42.353 | 170 | 95 | 1 | 269 | 435 | 362 | 531 | 2.40e-37 | 144 |
| Msa0169550 | AT2G46040.2 | 42.353 | 170 | 95 | 1 | 269 | 435 | 376 | 545 | 3.20e-37 | 144 |
| Msa0169550 | AT1G63800.2 | 51.493 | 134 | 15 | 4 | 1 | 102 | 1 | 116 | 5.34e-30 | 115 |
| Msa0169550 | AT1G63800.1 | 51.493 | 134 | 15 | 4 | 1 | 102 | 16 | 131 | 7.50e-30 | 115 |
| Msa0169550 | AT5G41340.1 | 50.000 | 136 | 14 | 4 | 1 | 102 | 16 | 131 | 5.22e-29 | 113 |
| Msa0169550 | AT5G04110.1 | 39.130 | 161 | 85 | 5 | 267 | 415 | 361 | 520 | 2.92e-27 | 115 |
| Msa0169550 | AT5G04110.3 | 39.130 | 161 | 85 | 5 | 267 | 415 | 361 | 520 | 2.92e-27 | 115 |
| Msa0169550 | AT5G04110.2 | 39.130 | 161 | 85 | 5 | 267 | 415 | 362 | 521 | 3.08e-27 | 115 |
| Msa0169550 | AT2G46030.4 | 44.030 | 134 | 25 | 3 | 1 | 102 | 19 | 134 | 5.03e-25 | 102 |
| Msa0169550 | AT2G46030.2 | 44.030 | 134 | 25 | 3 | 1 | 102 | 19 | 134 | 5.03e-25 | 102 |
| Msa0169550 | AT2G46030.5 | 44.030 | 134 | 25 | 3 | 1 | 102 | 16 | 131 | 5.20e-25 | 102 |
| Msa0169550 | AT2G46030.1 | 44.030 | 134 | 25 | 3 | 1 | 102 | 16 | 131 | 5.20e-25 | 102 |
| Msa0169550 | AT2G46030.3 | 44.030 | 134 | 25 | 3 | 1 | 102 | 88 | 203 | 2.01e-24 | 102 |
| Msa0169550 | AT1G13880.3 | 37.158 | 183 | 100 | 6 | 267 | 438 | 129 | 307 | 3.86e-23 | 101 |
| Msa0169550 | AT1G13880.1 | 37.158 | 183 | 100 | 6 | 267 | 438 | 128 | 306 | 3.94e-23 | 101 |
| Msa0169550 | AT1G13880.2 | 37.158 | 183 | 100 | 6 | 267 | 438 | 138 | 316 | 4.47e-23 | 101 |
| Msa0169550 | AT1G26580.3 | 32.275 | 189 | 108 | 4 | 265 | 434 | 67 | 254 | 1.85e-22 | 99.8 |
| Msa0169550 | AT1G26580.2 | 32.275 | 189 | 108 | 4 | 265 | 434 | 133 | 320 | 2.10e-22 | 100 |
| Msa0169550 | AT1G26580.1 | 32.275 | 189 | 108 | 4 | 265 | 434 | 133 | 320 | 2.10e-22 | 100 |
| Msa0169550 | AT2G03470.1 | 41.606 | 137 | 77 | 3 | 305 | 438 | 164 | 300 | 2.11e-22 | 99.8 |
| Msa0169550 | AT2G03470.2 | 41.606 | 137 | 77 | 3 | 305 | 438 | 163 | 299 | 2.17e-22 | 99.8 |
| Msa0169550 | AT5G41340.2 | 54.839 | 93 | 10 | 2 | 42 | 102 | 4 | 96 | 2.12e-21 | 90.9 |
| Msa0169550 | AT5G04110.4 | 39.041 | 146 | 75 | 6 | 267 | 399 | 361 | 505 | 1.88e-19 | 91.3 |
Find 106 sgRNAs with CRISPR-Local
Find 460 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTTGATGGTTCTGTTAA+TGG | 0.061237 | 1_4:+52750403 | None:intergenic |
| TCAGAGCGCTTTGAAGTTTA+TGG | 0.122843 | 1_4:-52748431 | Msa0169550:three_prime_UTR |
| ATTTCTAATGTCTTTGTAAT+TGG | 0.122958 | 1_4:-52754879 | Msa0169550:five_prime_UTR |
| CCATTGGGGATTTGATAAAA+TGG | 0.180493 | 1_4:-52748974 | Msa0169550:CDS |
| AATCGTTTGGTGATGGTTTC+GGG | 0.184205 | 1_4:-52748714 | Msa0169550:CDS |
| TCACGAGAATCATCACTAAA+TGG | 0.223620 | 1_4:+52749252 | None:intergenic |
| TTATACTCCTTCCCCTTTGA+TGG | 0.227519 | 1_4:+52750391 | None:intergenic |
| GAATCGTTTGGTGATGGTTT+CGG | 0.238389 | 1_4:-52748715 | Msa0169550:CDS |
| CAATGGACTGGTGTGGTTTA+TGG | 0.258881 | 1_4:-52749192 | Msa0169550:CDS |
| TGATGAAGAAAAGAGATTTA+AGG | 0.274155 | 1_4:-52748923 | Msa0169550:CDS |
| GATGAAGCTGAGATTTGAAT+TGG | 0.314374 | 1_4:-52749010 | Msa0169550:CDS |
| CAAACATGGGACTCCAAGTT+TGG | 0.326459 | 1_4:+52754060 | None:intergenic |
| GGTCTTGAATCATCTTTAAC+AGG | 0.327003 | 1_4:+52749135 | None:intergenic |
| ACAATAGAAGCAGACTTATA+AGG | 0.329409 | 1_4:+52754272 | None:intergenic |
| TTAATTCTCGCAAAGGTAAT+CGG | 0.335365 | 1_4:-52750444 | Msa0169550:CDS |
| TAATTGGGTTGTTGTGAATC+AGG | 0.337032 | 1_4:-52754863 | Msa0169550:five_prime_UTR |
| CTTCCTTGATGATGCGAGAT+TGG | 0.340428 | 1_4:-52753861 | Msa0169550:intron |
| CTCTTCAGTAGCAGCTGCTT+TGG | 0.350864 | 1_4:+52749287 | None:intergenic |
| AGAATCTGAGACGTAGTAAA+AGG | 0.353264 | 1_4:-52749449 | Msa0169550:CDS |
| TTCTTCTTGATCATGACATC+TGG | 0.361290 | 1_4:+52749357 | None:intergenic |
| CACTCCTTGAATTCAATTGA+TGG | 0.369411 | 1_4:+52748673 | None:intergenic |
| AAAGTGAAAACTTCCTCGTT+TGG | 0.379608 | 1_4:-52755047 | Msa0169550:five_prime_UTR |
| TCTGTTAATGGTTGAGCTAC+AGG | 0.388392 | 1_4:+52750415 | None:intergenic |
| TTTCTAATGTCTTTGTAATT+GGG | 0.398238 | 1_4:-52754878 | Msa0169550:five_prime_UTR |
| TCTACAATTTCTTCCTCAAA+TGG | 0.406293 | 1_4:+52748598 | None:intergenic |
| CGCTCTTAAGTTGCACGGTA+TGG | 0.410393 | 1_4:-52749418 | Msa0169550:CDS |
| TTCAAAGCGCTCTGACTAAA+CGG | 0.411511 | 1_4:+52748439 | None:intergenic |
| AATGGACTGGTGTGGTTTAT+GGG | 0.414512 | 1_4:-52749191 | Msa0169550:CDS |
| CATTGGGGATTTGATAAAAT+GGG | 0.415280 | 1_4:-52748973 | Msa0169550:CDS |
| TTGGATGATGATCCATGGTT+TGG | 0.415982 | 1_4:+52750298 | None:intergenic |
| TTTGATATTCAGGTCTGGTT+CGG | 0.422307 | 1_4:-52754102 | Msa0169550:intron |
| CAAACTTGGAGTCCCATGTT+TGG | 0.423196 | 1_4:-52754059 | Msa0169550:intron |
| GAAATCGAATTTGAATCGTT+TGG | 0.423565 | 1_4:-52748727 | Msa0169550:CDS |
| GCGAGGAAGTTTCACTTCAA+TGG | 0.427344 | 1_4:-52748951 | Msa0169550:CDS |
| GCGTCCATCAATTGAATTCA+AGG | 0.427623 | 1_4:-52748677 | Msa0169550:CDS |
| TCAAAGGGGAAGGAGTATAA+AGG | 0.428784 | 1_4:-52750388 | Msa0169550:CDS |
| AAACCACACCAGTCCATTGC+GGG | 0.436126 | 1_4:+52749196 | None:intergenic |
| CATCCAGTTACTTTCAAAAG+AGG | 0.442116 | 1_4:-52748852 | Msa0169550:CDS |
| TCAGAGAACAAGTAATGCTT+TGG | 0.442431 | 1_4:-52748649 | Msa0169550:exon |
| TGAAAATTATTGATAATTGA+TGG | 0.447965 | 1_4:+52750706 | None:intergenic |
| GATTGCATATTGCTGCAAAC+AGG | 0.460811 | 1_4:-52749032 | Msa0169550:CDS |
| ACAAGATCTGTTTCTGTAGT+AGG | 0.465747 | 1_4:+52749114 | None:intergenic |
| TAATTCTCGCAAAGGTAATC+GGG | 0.470568 | 1_4:-52750443 | Msa0169550:CDS |
| AATTGTAGTTGCAATGTTCA+AGG | 0.471046 | 1_4:-52749072 | Msa0169550:CDS |
| CTCAGATTCTCATACTTGGC+AGG | 0.476144 | 1_4:+52749462 | None:intergenic |
| AGTCCTATGGAGAAAACAAC+TGG | 0.476468 | 1_4:-52749384 | Msa0169550:CDS |
| CACGAGAATCATCACTAAAT+GGG | 0.487735 | 1_4:+52749253 | None:intergenic |
| TTAATAATGCTTACCAAACA+TGG | 0.488351 | 1_4:+52754046 | None:intergenic |
| ATGAAGCTGAGATTTGAATT+GGG | 0.488938 | 1_4:-52749009 | Msa0169550:CDS |
| TCCATTGCGGGACTTCCACT+TGG | 0.490081 | 1_4:+52749208 | None:intergenic |
| AAACTTACTGTGTATAACTT+AGG | 0.490431 | 1_4:+52754771 | None:intergenic |
| ACTACAGAAACAGATCTTGT+TGG | 0.490540 | 1_4:-52749111 | Msa0169550:CDS |
| TAGATGTTATTAACCAAACT+TGG | 0.492355 | 1_4:-52754073 | Msa0169550:CDS |
| GGGACTTCCACTTGGAAAAG+AGG | 0.495364 | 1_4:+52749216 | None:intergenic |
| GTGGAAGTCCCGCAATGGAC+TGG | 0.500938 | 1_4:-52749204 | Msa0169550:CDS |
| ACCATTAACAGAACCATCAA+AGG | 0.511680 | 1_4:-52750404 | Msa0169550:CDS |
| GAAGCAGATTCACCATTCAA+TGG | 0.515005 | 1_4:+52753880 | None:intergenic |
| TTCCATACGCCTTCTTGAGA+AGG | 0.515871 | 1_4:+52754323 | None:intergenic |
| GAATTTGAATCGTTTGGTGA+TGG | 0.515936 | 1_4:-52748721 | Msa0169550:CDS |
| GTCCTTCTCAAGAAGGCGTA+TGG | 0.519408 | 1_4:-52754325 | Msa0169550:CDS |
| GGGAGTGACTCTAAATCGTT+AGG | 0.521416 | 1_4:-52749171 | Msa0169550:CDS |
| AATGCATTAGATCCATTGAA+TGG | 0.528092 | 1_4:-52753892 | Msa0169550:CDS |
| GATTCTCGTGATGTTTCTGT+TGG | 0.528261 | 1_4:-52749240 | Msa0169550:CDS |
| CCATTAACAGAACCATCAAA+GGG | 0.530978 | 1_4:-52750403 | Msa0169550:CDS |
| CTGAAGAGTCCGTGCTGCAT+AGG | 0.541284 | 1_4:-52754380 | Msa0169550:intron |
| GTGGCGGTGATGGTACTAAC+TGG | 0.541483 | 1_4:+52750728 | None:intergenic |
| CTATCAGAATCGAGTGACTT+CGG | 0.542718 | 1_4:-52748773 | Msa0169550:CDS |
| GAAACAGATCTTGTTGGTAG+AGG | 0.542971 | 1_4:-52749105 | Msa0169550:CDS |
| CAGGATGATGAGTGATTACA+TGG | 0.544614 | 1_4:-52754844 | Msa0169550:exon |
| GAAGTTTCACTTCAATGGAC+AGG | 0.549438 | 1_4:-52748946 | Msa0169550:CDS |
| AAGGAATTTAATTCTCGCAA+AGG | 0.549454 | 1_4:-52750451 | Msa0169550:CDS |
| GACAGAACATCTCGTGCCCT+CGG | 0.555393 | 1_4:+52750340 | None:intergenic |
| ACAGTGTGATAAGCCATTTG+AGG | 0.555707 | 1_4:-52748611 | Msa0169550:three_prime_UTR |
| ATAATTGATGGTGGCGGTGA+TGG | 0.559121 | 1_4:+52750718 | None:intergenic |
| GGGATTTGATAAAATGGGCG+AGG | 0.561801 | 1_4:-52748968 | Msa0169550:CDS |
| GACAAACAAACACCGAAACA+TGG | 0.564332 | 1_4:-52754976 | Msa0169550:five_prime_UTR |
| CAAAGACATTAGAAATTCAG+AGG | 0.564946 | 1_4:+52754886 | None:intergenic |
| ACGTCTCAGATTCTCATACT+TGG | 0.572463 | 1_4:+52749458 | None:intergenic |
| CTGTGTATAACTTAGGTCGA+TGG | 0.579125 | 1_4:+52754778 | None:intergenic |
| AAAGACATTAGAAATTCAGA+GGG | 0.579787 | 1_4:+52754887 | None:intergenic |
| GCGCTCTGACTAAACGGCTA+GGG | 0.584034 | 1_4:+52748445 | None:intergenic |
| TCCAAGTGGAAGTCCCGCAA+TGG | 0.584534 | 1_4:-52749209 | Msa0169550:CDS |
| GCACCAATCTCGCATCATCA+AGG | 0.586225 | 1_4:+52753858 | None:intergenic |
| AACAGAACCATCAAAGGGGA+AGG | 0.593313 | 1_4:-52750398 | Msa0169550:CDS |
| TAATAATGCTTACCAAACAT+GGG | 0.599150 | 1_4:+52754047 | None:intergenic |
| ACTGCAGGTCCTTCTCAAGA+AGG | 0.599580 | 1_4:-52754332 | Msa0169550:CDS |
| ATACCTTGGATGATGATCCA+TGG | 0.606017 | 1_4:+52750293 | None:intergenic |
| TCTGTCGCTCTTAAGTTGCA+CGG | 0.610629 | 1_4:-52749423 | Msa0169550:CDS |
| AATCGTTAGGCACACAAGTG+TGG | 0.615406 | 1_4:-52749158 | Msa0169550:CDS |
| AGCGCTCTGACTAAACGGCT+AGG | 0.618415 | 1_4:+52748444 | None:intergenic |
| GAAGGAGTATAAAGGAGACC+AGG | 0.620677 | 1_4:-52750380 | Msa0169550:CDS |
| CTTGTTGGTAGAGGAAGACG+AGG | 0.623018 | 1_4:-52749096 | Msa0169550:CDS |
| AGGCGTATGGAAGATAAGAG+TGG | 0.628805 | 1_4:-52754312 | Msa0169550:CDS |
| AAACCATGGATCATCATCCA+AGG | 0.633710 | 1_4:-52750296 | Msa0169550:intron |
| CGTTTGGTGATGGTTTCGGG+AGG | 0.643908 | 1_4:-52748711 | Msa0169550:CDS |
| TAAACCACACCAGTCCATTG+CGG | 0.655876 | 1_4:+52749195 | None:intergenic |
| AAAGAGGACAAGAAAAGACA+TGG | 0.658301 | 1_4:-52748836 | Msa0169550:CDS |
| AAGCATGCAGAACCAAACCA+TGG | 0.663325 | 1_4:-52750310 | Msa0169550:CDS |
| GAGGGCACGAGATGTTCTGT+CGG | 0.675647 | 1_4:-52750338 | Msa0169550:CDS |
| GAGTGAAAACCTATGCAGCA+CGG | 0.688451 | 1_4:+52754371 | None:intergenic |
| AAATTATTGATAATTGATGG+TGG | 0.699825 | 1_4:+52750709 | None:intergenic |
| AGTCCCGCAATGGACTGGTG+TGG | 0.704697 | 1_4:-52749199 | Msa0169550:CDS |
| TTATTGATAATTGATGGTGG+CGG | 0.722468 | 1_4:+52750712 | None:intergenic |
| CATTAACAGAACCATCAAAG+GGG | 0.723370 | 1_4:-52750402 | Msa0169550:CDS |
| GTAGTGACTATGTCCAAACG+AGG | 0.765031 | 1_4:+52755034 | None:intergenic |
| AAGACATTAGAAATTCAGAG+GGG | 0.784761 | 1_4:+52754888 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTAAAAGATAATGTA+AGG | + | chr1_4:52751570-52751589 | None:intergenic | 10.0% |
| !! | AATATATTTGATAAAAATGA+AGG | - | chr1_4:52752012-52752031 | Msa0169550:intron | 10.0% |
| !! | ATATATTTGATAAAAATGAA+GGG | - | chr1_4:52752013-52752032 | Msa0169550:intron | 10.0% |
| !!! | GAATTTTATAACAAAAATAA+AGG | + | chr1_4:52752933-52752952 | None:intergenic | 10.0% |
| !! | GTTAATACAATAATAAAATA+CGG | - | chr1_4:52753446-52753465 | Msa0169550:intron | 10.0% |
| !! | TTAATACAATAATAAAATAC+GGG | - | chr1_4:52753447-52753466 | Msa0169550:intron | 10.0% |
| !!! | ATTTTACATATAATTCCAAT+TGG | - | chr1_4:52749764-52749783 | Msa0169550:intron | 15.0% |
| !!! | TTTTACATATAATTCCAATT+GGG | - | chr1_4:52749765-52749784 | Msa0169550:intron | 15.0% |
| !! | TATAATGATGTAATTAATGT+TGG | - | chr1_4:52750673-52750692 | Msa0169550:intron | 15.0% |
| !!! | ATTTTTTTGACATCAAATTT+TGG | - | chr1_4:52751023-52751042 | Msa0169550:intron | 15.0% |
| !! | AATAATGAAATAATAATGTG+CGG | + | chr1_4:52751965-52751984 | None:intergenic | 15.0% |
| !! | TATATTTGATAAAAATGAAG+GGG | - | chr1_4:52752014-52752033 | Msa0169550:intron | 15.0% |
| !!! | ATTTAAAATTGGTCAAAAAA+AGG | + | chr1_4:52752120-52752139 | None:intergenic | 15.0% |
| !!! | AATTTTGTAACTTTTAAGAT+GGG | + | chr1_4:52752143-52752162 | None:intergenic | 15.0% |
| !!! | AAATTTTGTAACTTTTAAGA+TGG | + | chr1_4:52752144-52752163 | None:intergenic | 15.0% |
| !! | CTTTATAATGTTAAATACTA+GGG | + | chr1_4:52752476-52752495 | None:intergenic | 15.0% |
| !!! | AATGTCAAAAAATATTTTGT+TGG | - | chr1_4:52752525-52752544 | Msa0169550:intron | 15.0% |
| !!! | ATGTCAAAAAATATTTTGTT+GGG | - | chr1_4:52752526-52752545 | Msa0169550:intron | 15.0% |
| !!! | AATTTGAGTTTTTATTCAAA+AGG | + | chr1_4:52752671-52752690 | None:intergenic | 15.0% |
| !!! | TGAAAATTATTGATAATTGA+TGG | + | chr1_4:52752760-52752779 | None:intergenic | 15.0% |
| !!! | ATCAATTATCAATAATTTTC+AGG | - | chr1_4:52752759-52752778 | Msa0169550:intron | 15.0% |
| !!! | TTTTATAACAAAAATAAAGG+AGG | + | chr1_4:52752930-52752949 | None:intergenic | 15.0% |
| !! | AAAACAAAAAATCCATGTTT+CGG | + | chr1_4:52748502-52748521 | None:intergenic | 20.0% |
| !! | ATTTCTAATGTCTTTGTAAT+TGG | - | chr1_4:52748584-52748603 | Msa0169550:three_prime_UTR | 20.0% |
| !! | TTTCTAATGTCTTTGTAATT+GGG | - | chr1_4:52748585-52748604 | Msa0169550:three_prime_UTR | 20.0% |
| !!! | TTTTAAGATGAAAGTTCTAT+TGG | - | chr1_4:52749288-52749307 | Msa0169550:CDS | 20.0% |
| !!! | AATCTTTTTCTTTGATATTC+AGG | - | chr1_4:52749351-52749370 | Msa0169550:CDS | 20.0% |
| !! | GCATATGAATAAAAAGTTAA+AGG | - | chr1_4:52749626-52749645 | Msa0169550:intron | 20.0% |
| !! | ATATGTAAAATGACAACTTA+TGG | + | chr1_4:52749755-52749774 | None:intergenic | 20.0% |
| !! | TTTACATATAATTCCAATTG+GGG | - | chr1_4:52749766-52749785 | Msa0169550:intron | 20.0% |
| !! | ATAAGACATTCATATTCTAT+TGG | + | chr1_4:52749968-52749987 | None:intergenic | 20.0% |
| !!! | AAACGTTAATGTTTTCTTTT+TGG | - | chr1_4:52750084-52750103 | Msa0169550:intron | 20.0% |
| !!! | AACGTTAATGTTTTCTTTTT+GGG | - | chr1_4:52750085-52750104 | Msa0169550:intron | 20.0% |
| !! | AAAAAATATAGGTCAAATCA+TGG | + | chr1_4:52750324-52750343 | None:intergenic | 20.0% |
| !! | ACATCATTATAAGTAACATA+AGG | + | chr1_4:52750664-52750683 | None:intergenic | 20.0% |
| !!! | AATCATTTTGAGATAAAAAG+GGG | + | chr1_4:52750735-52750754 | None:intergenic | 20.0% |
| !!! | CAATCATTTTGAGATAAAAA+GGG | + | chr1_4:52750736-52750755 | None:intergenic | 20.0% |
| !!! | TCAATCATTTTGAGATAAAA+AGG | + | chr1_4:52750737-52750756 | None:intergenic | 20.0% |
| !! | TTATCTCAAAATGATTGATA+TGG | - | chr1_4:52750739-52750758 | Msa0169550:CDS | 20.0% |
| !! | ATTAACACAATTGTAGAAAT+GGG | - | chr1_4:52751177-52751196 | Msa0169550:intron | 20.0% |
| !!! | ACCTTTCTATAATCTTTTTA+AGG | - | chr1_4:52751595-52751614 | Msa0169550:intron | 20.0% |
| !! | ACCTTAAAAAGATTATAGAA+AGG | + | chr1_4:52751599-52751618 | None:intergenic | 20.0% |
| !! | ATTTCAATGATTATAAAGTC+TGG | + | chr1_4:52751675-52751694 | None:intergenic | 20.0% |
| !! | ATATTTGATAAAAATGAAGG+GGG | - | chr1_4:52752015-52752034 | Msa0169550:intron | 20.0% |
| !!! | TTTAAGATGGGATTTAAAAT+TGG | + | chr1_4:52752131-52752150 | None:intergenic | 20.0% |
| !!! | CTCATACAACAATTTTAAAT+CGG | + | chr1_4:52752257-52752276 | None:intergenic | 20.0% |
| !! | TTGTAAATGCTTTAATGAAT+CGG | - | chr1_4:52752282-52752301 | Msa0169550:intron | 20.0% |
| !! | CCTTTATAATGTTAAATACT+AGG | + | chr1_4:52752477-52752496 | None:intergenic | 20.0% |
| !! | CCTAGTATTTAACATTATAA+AGG | - | chr1_4:52752474-52752493 | Msa0169550:intron | 20.0% |
| !! | AAAAAAAATCAAACAACTTG+TGG | + | chr1_4:52752505-52752524 | None:intergenic | 20.0% |
| !! | ATTCAAAAGGATAAGAAATA+TGG | + | chr1_4:52752658-52752677 | None:intergenic | 20.0% |
| !!! | AAATTATTGATAATTGATGG+TGG | + | chr1_4:52752757-52752776 | None:intergenic | 20.0% |
| !!! | TTATACATGATTTTACACAT+TGG | - | chr1_4:52753215-52753234 | Msa0169550:intron | 20.0% |
| !! | AATATATAATCACAATCTAC+CGG | - | chr1_4:52753351-52753370 | Msa0169550:intron | 20.0% |
| !! | AATAATAAAATACGGGAAAT+TGG | - | chr1_4:52753454-52753473 | Msa0169550:intron | 20.0% |
| !! | AATAACCCAATTAATACTAA+TGG | - | chr1_4:52753630-52753649 | Msa0169550:intron | 20.0% |
| !! | ATTCATTGAATAATCTATAG+TGG | + | chr1_4:52753837-52753856 | None:intergenic | 20.0% |
| !!! | TCACTTTTGATTAAGAAAGA+AGG | + | chr1_4:52748403-52748422 | None:intergenic | 25.0% |
| !! | TGTTTGTCTTTTGTAATTGT+GGG | + | chr1_4:52748475-52748494 | None:intergenic | 25.0% |
| !! | TTGTTTGTCTTTTGTAATTG+TGG | + | chr1_4:52748476-52748495 | None:intergenic | 25.0% |
| !!! | GATTTCAAAGAGTTTTGTTT+TGG | - | chr1_4:52748529-52748548 | Msa0169550:intron | 25.0% |
| !!! | TGTTTTGGATTTTTGTTACT+TGG | - | chr1_4:52748544-52748563 | Msa0169550:intron | 25.0% |
| ! | AAAGACATTAGAAATTCAGA+GGG | + | chr1_4:52748579-52748598 | None:intergenic | 25.0% |
| ! | AAACTTACTGTGTATAACTT+AGG | + | chr1_4:52748695-52748714 | None:intergenic | 25.0% |
| ! | TTCATTGATGCAACAAAAAA+GGG | + | chr1_4:52748746-52748765 | None:intergenic | 25.0% |
| ! | ATTCATTGATGCAACAAAAA+AGG | + | chr1_4:52748747-52748766 | None:intergenic | 25.0% |
| ! | TAGATGTTATTAACCAAACT+TGG | - | chr1_4:52749390-52749409 | Msa0169550:CDS | 25.0% |
| ! | TAATAATGCTTACCAAACAT+GGG | + | chr1_4:52749419-52749438 | None:intergenic | 25.0% |
| ! | TTAATAATGCTTACCAAACA+TGG | + | chr1_4:52749420-52749439 | None:intergenic | 25.0% |
| ! | AACCTTTACCTTACATATAT+TGG | - | chr1_4:52749441-52749460 | Msa0169550:CDS | 25.0% |
| ! | GCAAAAATAACAATCAAACA+AGG | + | chr1_4:52749514-52749533 | None:intergenic | 25.0% |
| !! | CTTTTTGTGTATTATTTGTG+AGG | + | chr1_4:52749894-52749913 | None:intergenic | 25.0% |
| !!! | TTAATGTTTTCTTTTTGGGT+TGG | - | chr1_4:52750089-52750108 | Msa0169550:intron | 25.0% |
| !!! | TAATGTTTTCTTTTTGGGTT+GGG | - | chr1_4:52750090-52750109 | Msa0169550:intron | 25.0% |
| !!! | TCATTTTTCAAAAAGCAATC+AGG | - | chr1_4:52750175-52750194 | Msa0169550:intron | 25.0% |
| !!! | CATTTTTCAAAAAGCAATCA+GGG | - | chr1_4:52750176-52750195 | Msa0169550:intron | 25.0% |
| ! | GGAGATCAAGAAAAAAATAT+AGG | + | chr1_4:52750335-52750354 | None:intergenic | 25.0% |
| ! | AAGAATAATCCAATAGTTAG+AGG | + | chr1_4:52750365-52750384 | None:intergenic | 25.0% |
| ! | AGTAGTCATCAATACATATA+AGG | + | chr1_4:52750571-52750590 | None:intergenic | 25.0% |
| ! | AATGTTGGATATGATATTGA+TGG | - | chr1_4:52750688-52750707 | Msa0169550:intron | 25.0% |
| ! | TAAAGGAAGAACATTTCAAT+TGG | + | chr1_4:52750798-52750817 | None:intergenic | 25.0% |
| ! | TATACAGTCTATAGTACTAA+AGG | + | chr1_4:52750815-52750834 | None:intergenic | 25.0% |
| ! | GATTAACACAATTGTAGAAA+TGG | - | chr1_4:52751176-52751195 | Msa0169550:intron | 25.0% |
| !!! | TAAACAACGAAGACTTTTTT+TGG | + | chr1_4:52751483-52751502 | None:intergenic | 25.0% |
| ! | TATTTGATAAAAATGAAGGG+GGG | - | chr1_4:52752016-52752035 | Msa0169550:intron | 25.0% |
| ! | TGGAATTTAATAGATCGAAA+TGG | + | chr1_4:52752097-52752116 | None:intergenic | 25.0% |
| ! | TAAAATTGGTCAAAAAAAGG+TGG | + | chr1_4:52752117-52752136 | None:intergenic | 25.0% |
| ! | AAATCAAACTTATCCGAATT+GGG | + | chr1_4:52752182-52752201 | None:intergenic | 25.0% |
| !! | AATTCGGATAAGTTTGATTT+GGG | - | chr1_4:52752182-52752201 | Msa0169550:intron | 25.0% |
| !! | TACAACAATTTTAAATCGGA+CGG | + | chr1_4:52752253-52752272 | None:intergenic | 25.0% |
| ! | GTCAAACCTACAATAAAAAA+TGG | + | chr1_4:52752389-52752408 | None:intergenic | 25.0% |
| !! | TTTATCGGACTAGATTAAAT+GGG | - | chr1_4:52752429-52752448 | Msa0169550:intron | 25.0% |
| ! | AAATACTAGGGTTGTTAATT+GGG | + | chr1_4:52752464-52752483 | None:intergenic | 25.0% |
| ! | TAAATACTAGGGTTGTTAAT+TGG | + | chr1_4:52752465-52752484 | None:intergenic | 25.0% |
| !! | TCAAAAAATATTTTGTTGGG+AGG | - | chr1_4:52752529-52752548 | Msa0169550:intron | 25.0% |
| !! | CAAAAAATATTTTGTTGGGA+GGG | - | chr1_4:52752530-52752549 | Msa0169550:intron | 25.0% |
| ! | TACGATCAACATAAACAAAA+GGG | - | chr1_4:52752885-52752904 | Msa0169550:intron | 25.0% |
| ! | AGAATTAAATTCCTTCTCAA+GGG | + | chr1_4:52753007-52753026 | None:intergenic | 25.0% |
| !!! | TATTGTTTTAGGAAAGAAAC+CGG | + | chr1_4:52753373-52753392 | None:intergenic | 25.0% |
| !! | TGTTTGTAATTTTGTAGACT+GGG | + | chr1_4:52753490-52753509 | None:intergenic | 25.0% |
| !! | ATGTTTGTAATTTTGTAGAC+TGG | + | chr1_4:52753491-52753510 | None:intergenic | 25.0% |
| ! | AAATTTCATAATGCAGTTAC+AGG | + | chr1_4:52753547-52753566 | None:intergenic | 25.0% |
| ! | TAATCGATATATAGATAACC+AGG | + | chr1_4:52753599-52753618 | None:intergenic | 25.0% |
| ! | CACATCCATTAGTATTAATT+GGG | + | chr1_4:52753638-52753657 | None:intergenic | 25.0% |
| ! | ACACATCCATTAGTATTAAT+TGG | + | chr1_4:52753639-52753658 | None:intergenic | 25.0% |
| ! | GATTATTCAATGAATCACTT+TGG | - | chr1_4:52753842-52753861 | Msa0169550:intron | 25.0% |
| !! | ATTTTCTTATGCTTTACAGA+AGG | - | chr1_4:52753967-52753986 | Msa0169550:intron | 25.0% |
| ! | TGATGAAGAAAAGAGATTTA+AGG | - | chr1_4:52754540-52754559 | Msa0169550:intron | 25.0% |
| AAGACATTAGAAATTCAGAG+GGG | + | chr1_4:52748578-52748597 | None:intergenic | 30.0% | |
| CAAAGACATTAGAAATTCAG+AGG | + | chr1_4:52748580-52748599 | None:intergenic | 30.0% | |
| TTCAACAAAAAACTGTTGCA+TGG | + | chr1_4:52748663-52748682 | None:intergenic | 30.0% | |
| AGGGGAAAAAATTGATACAA+CGG | + | chr1_4:52748727-52748746 | None:intergenic | 30.0% | |
| TCATTGATGCAACAAAAAAG+GGG | + | chr1_4:52748745-52748764 | None:intergenic | 30.0% | |
| TTGAATGTAATCACATGTGT+TGG | + | chr1_4:52748975-52748994 | None:intergenic | 30.0% | |
| ACATTCAATTATGTCATGTC+AGG | - | chr1_4:52748987-52749006 | Msa0169550:CDS | 30.0% | |
| !! | GGTTTTCACTCACTTTTATT+TGG | - | chr1_4:52749104-52749123 | Msa0169550:CDS | 30.0% |
| ACAATAGAAGCAGACTTATA+AGG | + | chr1_4:52749194-52749213 | None:intergenic | 30.0% | |
| CATTTCATCAACATTAGGAA+TGG | + | chr1_4:52749235-52749254 | None:intergenic | 30.0% | |
| ACTCACATTTCATCAACATT+AGG | + | chr1_4:52749240-52749259 | None:intergenic | 30.0% | |
| ! | TTTTCTTTGATATTCAGGTC+TGG | - | chr1_4:52749356-52749375 | Msa0169550:CDS | 30.0% |
| CACCAATATATGTAAGGTAA+AGG | + | chr1_4:52749446-52749465 | None:intergenic | 30.0% | |
| CTTTACCTTACATATATTGG+TGG | - | chr1_4:52749444-52749463 | Msa0169550:CDS | 30.0% | |
| CATTACCACCAATATATGTA+AGG | + | chr1_4:52749452-52749471 | None:intergenic | 30.0% | |
| AATGCATTAGATCCATTGAA+TGG | - | chr1_4:52749571-52749590 | Msa0169550:intron | 30.0% | |
| !! | TTATTTGTGAGGTATTGTGT+GGG | + | chr1_4:52749883-52749902 | None:intergenic | 30.0% |
| !! | ATTATTTGTGAGGTATTGTG+TGG | + | chr1_4:52749884-52749903 | None:intergenic | 30.0% |
| !! | ATATTCTATTGGTTTCAGCA+GGG | + | chr1_4:52749957-52749976 | None:intergenic | 30.0% |
| ! | TGTTTGTTGCCATGAATTAT+AGG | + | chr1_4:52750150-52750169 | None:intergenic | 30.0% |
| CTATTGGATTATTCTTCATC+TGG | - | chr1_4:52750369-52750388 | Msa0169550:CDS | 30.0% | |
| !! | TTGCTTTTATCAGTCTAAGA+TGG | - | chr1_4:52750408-52750427 | Msa0169550:CDS | 30.0% |
| !! | TGCTTTTATCAGTCTAAGAT+GGG | - | chr1_4:52750409-52750428 | Msa0169550:CDS | 30.0% |
| !! | TTCTTGCTTCATTTTTCGTT+TGG | - | chr1_4:52750508-52750527 | Msa0169550:intron | 30.0% |
| GTATATGTTTGAATTCACTG+TGG | - | chr1_4:52750830-52750849 | Msa0169550:intron | 30.0% | |
| !! | TTTACCCATTTTTCTCAATG+AGG | - | chr1_4:52750956-52750975 | Msa0169550:intron | 30.0% |
| !! | TTACCCATTTTTCTCAATGA+GGG | - | chr1_4:52750957-52750976 | Msa0169550:intron | 30.0% |
| !!! | TCAAATTTTGGTGTCGAATA+CGG | - | chr1_4:52751035-52751054 | Msa0169550:intron | 30.0% |
| !! | TCAGTTTCACTCACTTTTAT+TGG | - | chr1_4:52751224-52751243 | Msa0169550:intron | 30.0% |
| !! | CAGTTTCACTCACTTTTATT+GGG | - | chr1_4:52751225-52751244 | Msa0169550:intron | 30.0% |
| TTGTTGACAAAACCAATTGA+AGG | + | chr1_4:52751330-52751349 | None:intergenic | 30.0% | |
| ACTCACATTTCATCAACATT+AGG | + | chr1_4:52749240-52749259 | None:intergenic | 30.0% | |
| TTCATGTCTCTTAGAAAACA+AGG | + | chr1_4:52751390-52751409 | None:intergenic | 30.0% | |
| !! | ACATGAAAAGAGTTCTAAGA+AGG | - | chr1_4:52751403-52751422 | Msa0169550:intron | 30.0% |
| CAAACTTAGGTGAATGTATT+GGG | + | chr1_4:52751626-52751645 | None:intergenic | 30.0% | |
| TCAAACTTAGGTGAATGTAT+TGG | + | chr1_4:52751627-52751646 | None:intergenic | 30.0% | |
| AATGATTATAAAGTCTGGCA+TGG | + | chr1_4:52751670-52751689 | None:intergenic | 30.0% | |
| ! | ACCATTTAAGGTGAATAAGT+GGG | - | chr1_4:52751846-52751865 | Msa0169550:intron | 30.0% |
| CAAATCAAACTTATCCGAAT+TGG | + | chr1_4:52752183-52752202 | None:intergenic | 30.0% | |
| CAATTCGGATAAGTTTGATT+TGG | - | chr1_4:52752181-52752200 | Msa0169550:intron | 30.0% | |
| !! | GATAAGTTTGATTTGGGAAA+TGG | - | chr1_4:52752188-52752207 | Msa0169550:intron | 30.0% |
| !! | TTTGATTTGGGAAATGGATT+TGG | - | chr1_4:52752194-52752213 | Msa0169550:intron | 30.0% |
| ! | CTTTATCGGACTAGATTAAA+TGG | - | chr1_4:52752428-52752447 | Msa0169550:intron | 30.0% |
| !! | TTATTGATAATTGATGGTGG+CGG | + | chr1_4:52752754-52752773 | None:intergenic | 30.0% |
| AACACAGAACATCACAAAAA+TGG | + | chr1_4:52752863-52752882 | None:intergenic | 30.0% | |
| GTACGATCAACATAAACAAA+AGG | - | chr1_4:52752884-52752903 | Msa0169550:intron | 30.0% | |
| AGAAGTAGATCAAAAGTTCT+TGG | - | chr1_4:52752969-52752988 | Msa0169550:intron | 30.0% | |
| GAGAATTAAATTCCTTCTCA+AGG | + | chr1_4:52753008-52753027 | None:intergenic | 30.0% | |
| AAGGAATTTAATTCTCGCAA+AGG | - | chr1_4:52753012-52753031 | Msa0169550:intron | 30.0% | |
| TTAATTCTCGCAAAGGTAAT+CGG | - | chr1_4:52753019-52753038 | Msa0169550:intron | 30.0% | |
| TGTGTAGTGAAAATATACCT+TGG | + | chr1_4:52753187-52753206 | None:intergenic | 30.0% | |
| CTCAATAGTGCTAATAATGA+TGG | + | chr1_4:52753524-52753543 | None:intergenic | 30.0% | |
| AATCCAATTCATGCGATTTA+GGG | + | chr1_4:52753725-52753744 | None:intergenic | 30.0% | |
| AATTGTAGTTGCAATGTTCA+AGG | - | chr1_4:52754391-52754410 | Msa0169550:intron | 30.0% | |
| ATGAAGCTGAGATTTGAATT+GGG | - | chr1_4:52754454-52754473 | Msa0169550:intron | 30.0% | |
| CATTGGGGATTTGATAAAAT+GGG | - | chr1_4:52754490-52754509 | Msa0169550:intron | 30.0% | |
| !! | GTTCCAAAAAGACTTGTTTT+GGG | + | chr1_4:52754587-52754606 | None:intergenic | 30.0% |
| !! | TGTTCCAAAAAGACTTGTTT+TGG | + | chr1_4:52754588-52754607 | None:intergenic | 30.0% |
| GAAATCGAATTTGAATCGTT+TGG | - | chr1_4:52754736-52754755 | Msa0169550:intron | 30.0% | |
| TCTACAATTTCTTCCTCAAA+TGG | + | chr1_4:52754868-52754887 | None:intergenic | 30.0% | |
| AAAGTGAAAACTTCCTCGTT+TGG | - | chr1_4:52748416-52748435 | Msa0169550:three_prime_UTR | 35.0% | |
| ! | TAATTGGGTTGTTGTGAATC+AGG | - | chr1_4:52748600-52748619 | Msa0169550:three_prime_UTR | 35.0% |
| GGGAAAAAATTGATACAACG+GGG | + | chr1_4:52748725-52748744 | None:intergenic | 35.0% | |
| GGGGAAAAAATTGATACAAC+GGG | + | chr1_4:52748726-52748745 | None:intergenic | 35.0% | |
| ! | TTTGCCTATTTTCTTCAACG+AGG | - | chr1_4:52748768-52748787 | Msa0169550:CDS | 35.0% |
| TCATCCTCGTTGAAGAAAAT+AGG | + | chr1_4:52748775-52748794 | None:intergenic | 35.0% | |
| AACGAGGATGAATTGCATTA+GGG | - | chr1_4:52748784-52748803 | Msa0169550:CDS | 35.0% | |
| CGAATTGTGTTTAGCACATA+AGG | - | chr1_4:52748867-52748886 | Msa0169550:CDS | 35.0% | |
| !! | TAGAAGTGTTGATGCTATAC+AGG | + | chr1_4:52748915-52748934 | None:intergenic | 35.0% |
| GCATCAACACTTCTAATTGA+AGG | - | chr1_4:52748920-52748939 | Msa0169550:CDS | 35.0% | |
| TTTGATATTCAGGTCTGGTT+CGG | - | chr1_4:52749361-52749380 | Msa0169550:CDS | 35.0% | |
| ! | CATTCTGGAGAAACTTAACA+AGG | + | chr1_4:52749659-52749678 | None:intergenic | 35.0% |
| TCTCCAGAATGAAACTGTAA+TGG | - | chr1_4:52749668-52749687 | Msa0169550:intron | 35.0% | |
| !! | TATTCTATTGGTTTCAGCAG+GGG | + | chr1_4:52749956-52749975 | None:intergenic | 35.0% |
| !! | CATATTCTATTGGTTTCAGC+AGG | + | chr1_4:52749958-52749977 | None:intergenic | 35.0% |
| ACAAAACTACGATAAGTGTG+TGG | + | chr1_4:52750024-52750043 | None:intergenic | 35.0% | |
| ! | TTTTGTGTGCTATAAGCTCT+TGG | - | chr1_4:52750038-52750057 | Msa0169550:intron | 35.0% |
| TTTGTGTGCTATAAGCTCTT+GGG | - | chr1_4:52750039-52750058 | Msa0169550:intron | 35.0% | |
| TCTTGGGTCTGTATTCATAT+TGG | - | chr1_4:52750055-52750074 | Msa0169550:intron | 35.0% | |
| CTTGGGTCTGTATTCATATT+GGG | - | chr1_4:52750056-52750075 | Msa0169550:intron | 35.0% | |
| TTTCAAAAAGCAATCAGGGA+TGG | - | chr1_4:52750180-52750199 | Msa0169550:intron | 35.0% | |
| TATAAACAATCCGACCTAGT+AGG | + | chr1_4:52750231-52750250 | None:intergenic | 35.0% | |
| CTAATACATGACAGGACTAT+TGG | + | chr1_4:52750268-52750287 | None:intergenic | 35.0% | |
| CAATAGTCCTGTCATGTATT+AGG | - | chr1_4:52750266-52750285 | Msa0169550:intron | 35.0% | |
| CAAATCATGGAGAGATTTAG+AGG | + | chr1_4:52750311-52750330 | None:intergenic | 35.0% | |
| CCAATAGTTAGAGGTAGAAA+GGG | + | chr1_4:52750356-52750375 | None:intergenic | 35.0% | |
| TCCAATAGTTAGAGGTAGAA+AGG | + | chr1_4:52750357-52750376 | None:intergenic | 35.0% | |
| GTTCATTGAAGAGAGAATCA+GGG | + | chr1_4:52750441-52750460 | None:intergenic | 35.0% | |
| TGTTCATTGAAGAGAGAATC+AGG | + | chr1_4:52750442-52750461 | None:intergenic | 35.0% | |
| ATAAGGAATACAGTGCAAAC+AGG | + | chr1_4:52750554-52750573 | None:intergenic | 35.0% | |
| ! | TTGGATATGATATTGATGGC+TGG | - | chr1_4:52750692-52750711 | Msa0169550:intron | 35.0% |
| TCACCCTCATTGAGAAAAAT+GGG | + | chr1_4:52750963-52750982 | None:intergenic | 35.0% | |
| TTCACCCTCATTGAGAAAAA+TGG | + | chr1_4:52750964-52750983 | None:intergenic | 35.0% | |
| !!! | CAAATTTTGGTGTCGAATAC+GGG | - | chr1_4:52751036-52751055 | Msa0169550:intron | 35.0% |
| TGTGTGTAAGTTGTTGTAGA+AGG | - | chr1_4:52751088-52751107 | Msa0169550:intron | 35.0% | |
| TTCCATACACCTTCTTGATA+AGG | + | chr1_4:52751264-52751283 | None:intergenic | 35.0% | |
| AACTTACAAGGATGAACATC+AGG | + | chr1_4:52751306-52751325 | None:intergenic | 35.0% | |
| CCAATTGAAGGAAACTTACA+AGG | + | chr1_4:52751318-52751337 | None:intergenic | 35.0% | |
| CCTTGTAAGTTTCCTTCAAT+TGG | - | chr1_4:52751315-52751334 | Msa0169550:intron | 35.0% | |
| TAAGTTAGTAGTCGTATCCA+GGG | + | chr1_4:52751445-52751464 | None:intergenic | 35.0% | |
| TTAAGTTAGTAGTCGTATCC+AGG | + | chr1_4:52751446-52751465 | None:intergenic | 35.0% | |
| GGTATGCGATAATCAAACTT+AGG | + | chr1_4:52751639-52751658 | None:intergenic | 35.0% | |
| TTATAAAGTCTGGCATGGTT+AGG | + | chr1_4:52751665-52751684 | None:intergenic | 35.0% | |
| !!! | TTTTTTGTCAAGTAGCCTAG+TGG | - | chr1_4:52751813-52751832 | Msa0169550:intron | 35.0% |
| GGCTAGAAATTCACCATTTA+AGG | - | chr1_4:52751834-52751853 | Msa0169550:intron | 35.0% | |
| ! | CACCATTTAAGGTGAATAAG+TGG | - | chr1_4:52751845-52751864 | Msa0169550:intron | 35.0% |
| ! | CCATTTAAGGTGAATAAGTG+GGG | - | chr1_4:52751847-52751866 | Msa0169550:intron | 35.0% |
| ACACGGCATTATATTTGCAA+GGG | + | chr1_4:52751894-52751913 | None:intergenic | 35.0% | |
| ! | ACCAATTTTCTGACCCAATT+CGG | - | chr1_4:52752166-52752185 | Msa0169550:intron | 35.0% |
| ! | AACAATTTTAAATCGGACGG+TGG | + | chr1_4:52752250-52752269 | None:intergenic | 35.0% |
| ATCGTCTGATCTCAAATCAA+TGG | - | chr1_4:52752313-52752332 | Msa0169550:intron | 35.0% | |
| TGAGAAATCATACACGCTAT+GGG | + | chr1_4:52752348-52752367 | None:intergenic | 35.0% | |
| TTGAGAAATCATACACGCTA+TGG | + | chr1_4:52752349-52752368 | None:intergenic | 35.0% | |
| ! | TTGACTTGACCTAATCGATT+TGG | - | chr1_4:52752404-52752423 | Msa0169550:intron | 35.0% |
| ! | TGACTTGACCTAATCGATTT+GGG | - | chr1_4:52752405-52752424 | Msa0169550:intron | 35.0% |
| !! | CTAATCGATTTGGGCTTTAT+CGG | - | chr1_4:52752414-52752433 | Msa0169550:intron | 35.0% |
| ACAGAACATCACAAAAATGG+CGG | + | chr1_4:52752860-52752879 | None:intergenic | 35.0% | |
| CATAAACAAAAGGGCAATCT+AGG | - | chr1_4:52752894-52752913 | Msa0169550:intron | 35.0% | |
| GATCAAAAGTTCTTGGCAAA+CGG | - | chr1_4:52752976-52752995 | Msa0169550:intron | 35.0% | |
| ATCAAAAGTTCTTGGCAAAC+GGG | - | chr1_4:52752977-52752996 | Msa0169550:intron | 35.0% | |
| TAATTCTCGCAAAGGTAATC+GGG | - | chr1_4:52753020-52753039 | Msa0169550:intron | 35.0% | |
| ACCATTAACAGAACCATCAA+AGG | - | chr1_4:52753059-52753078 | Msa0169550:intron | 35.0% | |
| CCATTAACAGAACCATCAAA+GGG | - | chr1_4:52753060-52753079 | Msa0169550:intron | 35.0% | |
| CATTAACAGAACCATCAAAG+GGG | - | chr1_4:52753061-52753080 | Msa0169550:intron | 35.0% | |
| !! | ATGTGAAAACATTCTGGTTC+AGG | + | chr1_4:52753261-52753280 | None:intergenic | 35.0% |
| CCATTCATGTGAAAACATTC+TGG | + | chr1_4:52753267-52753286 | None:intergenic | 35.0% | |
| ! | CCAGAATGTTTTCACATGAA+TGG | - | chr1_4:52753264-52753283 | Msa0169550:intron | 35.0% |
| TAACTGCTATAGGTCAACAA+GGG | - | chr1_4:52753424-52753443 | Msa0169550:intron | 35.0% | |
| AGTGCAGTTACAGTTCTTAA+TGG | + | chr1_4:52753570-52753589 | None:intergenic | 35.0% | |
| ATGGATGTGTGTATCTTTGT+TGG | - | chr1_4:52753649-52753668 | Msa0169550:intron | 35.0% | |
| ATCCAATTCATGCGATTTAG+GGG | + | chr1_4:52753724-52753743 | None:intergenic | 35.0% | |
| GAATCCAATTCATGCGATTT+AGG | + | chr1_4:52753726-52753745 | None:intergenic | 35.0% | |
| CATGAATTGGATTCTGTTGT+GGG | - | chr1_4:52753732-52753751 | Msa0169550:intron | 35.0% | |
| ! | AGAATCTGAGACGTAGTAAA+AGG | - | chr1_4:52754014-52754033 | Msa0169550:intron | 35.0% |
| GGAATCAGAAAAAAGTCCTA+TGG | - | chr1_4:52754066-52754085 | Msa0169550:CDS | 35.0% | |
| TTCTTCTTGATCATGACATC+TGG | + | chr1_4:52754109-52754128 | None:intergenic | 35.0% | |
| CACGAGAATCATCACTAAAT+GGG | + | chr1_4:52754213-52754232 | None:intergenic | 35.0% | |
| TCACGAGAATCATCACTAAA+TGG | + | chr1_4:52754214-52754233 | None:intergenic | 35.0% | |
| GGTCTTGAATCATCTTTAAC+AGG | + | chr1_4:52754331-52754350 | None:intergenic | 35.0% | |
| !! | ACAAGATCTGTTTCTGTAGT+AGG | + | chr1_4:52754352-52754371 | None:intergenic | 35.0% |
| ACTACAGAAACAGATCTTGT+TGG | - | chr1_4:52754352-52754371 | Msa0169550:CDS | 35.0% | |
| GATGAAGCTGAGATTTGAAT+TGG | - | chr1_4:52754453-52754472 | Msa0169550:intron | 35.0% | |
| ! | CCATTTTATCAAATCCCCAA+TGG | + | chr1_4:52754492-52754511 | None:intergenic | 35.0% |
| CCATTGGGGATTTGATAAAA+TGG | - | chr1_4:52754489-52754508 | Msa0169550:intron | 35.0% | |
| !!! | AAAAAGACTTGTTTTGGGAG+GGG | + | chr1_4:52754582-52754601 | None:intergenic | 35.0% |
| !!! | CAAAAAGACTTGTTTTGGGA+GGG | + | chr1_4:52754583-52754602 | None:intergenic | 35.0% |
| !! | CTCTTTTGAAAGTAACTGGA+TGG | + | chr1_4:52754613-52754632 | None:intergenic | 35.0% |
| ! | CATCCAGTTACTTTCAAAAG+AGG | - | chr1_4:52754611-52754630 | Msa0169550:intron | 35.0% |
| !! | TGTCCTCTTTTGAAAGTAAC+TGG | + | chr1_4:52754617-52754636 | None:intergenic | 35.0% |
| AAAGAGGACAAGAAAAGACA+TGG | - | chr1_4:52754627-52754646 | Msa0169550:intron | 35.0% | |
| ! | GAATTTGAATCGTTTGGTGA+TGG | - | chr1_4:52754742-52754761 | Msa0169550:intron | 35.0% |
| CACTCCTTGAATTCAATTGA+TGG | + | chr1_4:52754793-52754812 | None:intergenic | 35.0% | |
| TCAGAGAACAAGTAATGCTT+TGG | - | chr1_4:52754814-52754833 | Msa0169550:CDS | 35.0% | |
| GACAAACAAACACCGAAACA+TGG | - | chr1_4:52748487-52748506 | Msa0169550:three_prime_UTR | 40.0% | |
| CAGGATGATGAGTGATTACA+TGG | - | chr1_4:52748619-52748638 | Msa0169550:three_prime_UTR | 40.0% | |
| CTGTGTATAACTTAGGTCGA+TGG | + | chr1_4:52748688-52748707 | None:intergenic | 40.0% | |
| CAACGAGGATGAATTGCATT+AGG | - | chr1_4:52748783-52748802 | Msa0169550:CDS | 40.0% | |
| ATTGCATTAGGGTCTATGAC+TGG | - | chr1_4:52748795-52748814 | Msa0169550:CDS | 40.0% | |
| ! | GTCTATGACTGGTTAACTCT+AGG | - | chr1_4:52748806-52748825 | Msa0169550:CDS | 40.0% |
| ! | CTTCTAATTGAAGGTGTGTC+CGG | - | chr1_4:52748929-52748948 | Msa0169550:CDS | 40.0% |
| ! | TTAAAGGCATGTCCAATGTC+CGG | + | chr1_4:52749062-52749081 | None:intergenic | 40.0% |
| !! | CTTTTATTTGGACTCACTGC+AGG | - | chr1_4:52749116-52749135 | Msa0169550:CDS | 40.0% |
| GAAGCAGATTCACCATTCAA+TGG | + | chr1_4:52749586-52749605 | None:intergenic | 40.0% | |
| CAGCCATTACAGTTTCATTC+TGG | + | chr1_4:52749674-52749693 | None:intergenic | 40.0% | |
| AGGAGCTGATGCATTTGATA+TGG | + | chr1_4:52749858-52749877 | None:intergenic | 40.0% | |
| GTAGACCTGCCTATAATTCA+TGG | - | chr1_4:52750138-52750157 | Msa0169550:intron | 40.0% | |
| TGTTGCCATGAATTATAGGC+AGG | + | chr1_4:52750146-52750165 | None:intergenic | 40.0% | |
| ! | CAACCAGTCTTTTTCCTACT+AGG | - | chr1_4:52750214-52750233 | Msa0169550:intron | 40.0% |
| ! | CAGTCTTTTTCCTACTAGGT+CGG | - | chr1_4:52750218-52750237 | Msa0169550:intron | 40.0% |
| CTTTGGACCTAATACATGAC+AGG | + | chr1_4:52750276-52750295 | None:intergenic | 40.0% | |
| AGAGGTAGATGATCTGTCTT+TGG | + | chr1_4:52750293-52750312 | None:intergenic | 40.0% | |
| CCCTTTCTACCTCTAACTAT+TGG | - | chr1_4:52750353-52750372 | Msa0169550:CDS | 40.0% | |
| ATAACCCTTTCTCAGTCTTG+TGG | - | chr1_4:52750467-52750486 | Msa0169550:intron | 40.0% | |
| GATACCACAAGACTGAGAAA+GGG | + | chr1_4:52750474-52750493 | None:intergenic | 40.0% | |
| TGATACCACAAGACTGAGAA+AGG | + | chr1_4:52750475-52750494 | None:intergenic | 40.0% | |
| TACAGTGCAAACAGGTCATT+CGG | + | chr1_4:52750546-52750565 | None:intergenic | 40.0% | |
| ! | ACTGTGGAGTGTTATCTATC+TGG | - | chr1_4:52750846-52750865 | Msa0169550:intron | 40.0% |
| GCAATTGTACTTCAATGTCG+CGG | - | chr1_4:52750925-52750944 | Msa0169550:intron | 40.0% | |
| CAATGAGGGTGAATTGCATT+AGG | - | chr1_4:52750971-52750990 | Msa0169550:intron | 40.0% | |
| ! | CTTTTATTGGGACTTATCGC+AGG | - | chr1_4:52751237-52751256 | Msa0169550:intron | 40.0% |
| ! | GTCCTTATCAAGAAGGTGTA+TGG | - | chr1_4:52751259-52751278 | Msa0169550:intron | 40.0% |
| !! | AGTTCTAAGAAGGAAGCTCA+GGG | - | chr1_4:52751413-52751432 | Msa0169550:intron | 40.0% |
| !! | ATGGTGAATTTCTAGCCACT+AGG | + | chr1_4:52751831-52751850 | None:intergenic | 40.0% |
| CCCCACTTATTCACCTTAAA+TGG | + | chr1_4:52751850-52751869 | None:intergenic | 40.0% | |
| CATTATATTTGCAAGGGCTG+GGG | + | chr1_4:52751888-52751907 | None:intergenic | 40.0% | |
| GCATTATATTTGCAAGGGCT+GGG | + | chr1_4:52751889-52751908 | None:intergenic | 40.0% | |
| GACACGGCATTATATTTGCA+AGG | + | chr1_4:52751895-52751914 | None:intergenic | 40.0% | |
| TGAGATTAGGTCAGTTGCTA+GGG | + | chr1_4:52751917-52751936 | None:intergenic | 40.0% | |
| ATAATCGTCCCAGTGAGATT+AGG | + | chr1_4:52751930-52751949 | None:intergenic | 40.0% | |
| TCCGAATTGGGTCAGAAAAT+TGG | + | chr1_4:52752170-52752189 | None:intergenic | 40.0% | |
| ! | AATTTTAAATCGGACGGTGG+AGG | + | chr1_4:52752247-52752266 | None:intergenic | 40.0% |
| ATACACGCTATGGGTAATCT+CGG | + | chr1_4:52752339-52752358 | None:intergenic | 40.0% | |
| GTATGATTTCTCAACTGCAG+TGG | - | chr1_4:52752355-52752374 | Msa0169550:intron | 40.0% | |
| CGATAAAGCCCAAATCGATT+AGG | + | chr1_4:52752416-52752435 | None:intergenic | 40.0% | |
| ACTAGGGTTGTTAATTGGGT+GGG | + | chr1_4:52752460-52752479 | None:intergenic | 40.0% | |
| TACTAGGGTTGTTAATTGGG+TGG | + | chr1_4:52752461-52752480 | None:intergenic | 40.0% | |
| GAAGAAGGGGAATGAAATGA+AGG | - | chr1_4:52752558-52752577 | Msa0169550:intron | 40.0% | |
| GGTGACATCAAGGAAATGAA+GGG | + | chr1_4:52752839-52752858 | None:intergenic | 40.0% | |
| TCTGTTAATGGTTGAGCTAC+AGG | + | chr1_4:52753051-52753070 | None:intergenic | 40.0% | |
| ! | CCCTTTGATGGTTCTGTTAA+TGG | + | chr1_4:52753063-52753082 | None:intergenic | 40.0% |
| TTATACTCCTTCCCCTTTGA+TGG | + | chr1_4:52753075-52753094 | None:intergenic | 40.0% | |
| ! | TCAAAGGGGAAGGAGTATAA+AGG | - | chr1_4:52753075-52753094 | Msa0169550:intron | 40.0% |
| GCATCTGAACAAAAATGTCC+TGG | + | chr1_4:52753104-52753123 | None:intergenic | 40.0% | |
| ! | ACATTTTTGTTCAGATGCCG+AGG | - | chr1_4:52753106-52753125 | Msa0169550:intron | 40.0% |
| ! | CATTTTTGTTCAGATGCCGA+GGG | - | chr1_4:52753107-52753126 | Msa0169550:intron | 40.0% |
| TTGGATGATGATCCATGGTT+TGG | + | chr1_4:52753168-52753187 | None:intergenic | 40.0% | |
| AAACCATGGATCATCATCCA+AGG | - | chr1_4:52753167-52753186 | Msa0169550:intron | 40.0% | |
| ATACCTTGGATGATGATCCA+TGG | + | chr1_4:52753173-52753192 | None:intergenic | 40.0% | |
| CTAACTGCTATAGGTCAACA+AGG | - | chr1_4:52753423-52753442 | Msa0169550:intron | 40.0% | |
| TACGGGAAATTGGATAGCTT+TGG | - | chr1_4:52753464-52753483 | Msa0169550:intron | 40.0% | |
| TACCCCTAAATCGCATGAAT+TGG | - | chr1_4:52753719-52753738 | Msa0169550:intron | 40.0% | |
| GCATGAATTGGATTCTGTTG+TGG | - | chr1_4:52753731-52753750 | Msa0169550:intron | 40.0% | |
| ! | CGTTTCAAGGCCTTTTAGAT+GGG | + | chr1_4:52753783-52753802 | None:intergenic | 40.0% |
| CCATCTAAAAGGCCTTGAAA+CGG | - | chr1_4:52753781-52753800 | Msa0169550:intron | 40.0% | |
| ACGTCTCAGATTCTCATACT+TGG | + | chr1_4:52754008-52754027 | None:intergenic | 40.0% | |
| AGTCCTATGGAGAAAACAAC+TGG | - | chr1_4:52754079-52754098 | Msa0169550:CDS | 40.0% | |
| !! | TTGCCAGTTGTTTTCTCCAT+AGG | + | chr1_4:52754085-52754104 | None:intergenic | 40.0% |
| !!! | CTTTTTTGTCACAGCTGCTT+TGG | + | chr1_4:52754143-52754162 | None:intergenic | 40.0% |
| ! | GATTCTCGTGATGTTTCTGT+TGG | - | chr1_4:52754223-52754242 | Msa0169550:intron | 40.0% |
| !! | AATGGACTGGTGTGGTTTAT+GGG | - | chr1_4:52754272-52754291 | Msa0169550:intron | 40.0% |
| ! | GAAACAGATCTTGTTGGTAG+AGG | - | chr1_4:52754358-52754377 | Msa0169550:CDS | 40.0% |
| GATTGCATATTGCTGCAAAC+AGG | - | chr1_4:52754431-52754450 | Msa0169550:intron | 40.0% | |
| ! | TGGGTTCTGCATTTTACCAT+TGG | - | chr1_4:52754473-52754492 | Msa0169550:intron | 40.0% |
| ! | GGGTTCTGCATTTTACCATT+GGG | - | chr1_4:52754474-52754493 | Msa0169550:intron | 40.0% |
| ! | GGTTCTGCATTTTACCATTG+GGG | - | chr1_4:52754475-52754494 | Msa0169550:intron | 40.0% |
| GAAGTTTCACTTCAATGGAC+AGG | - | chr1_4:52754517-52754536 | Msa0169550:intron | 40.0% | |
| !!! | CCAAAAAGACTTGTTTTGGG+AGG | + | chr1_4:52754584-52754603 | None:intergenic | 40.0% |
| ! | CCTCCCAAAACAAGTCTTTT+TGG | - | chr1_4:52754581-52754600 | Msa0169550:intron | 40.0% |
| CTATCAGAATCGAGTGACTT+CGG | - | chr1_4:52754690-52754709 | Msa0169550:intron | 40.0% | |
| !! | GAATCGTTTGGTGATGGTTT+CGG | - | chr1_4:52754748-52754767 | Msa0169550:intron | 40.0% |
| !! | AATCGTTTGGTGATGGTTTC+GGG | - | chr1_4:52754749-52754768 | Msa0169550:intron | 40.0% |
| GCGTCCATCAATTGAATTCA+AGG | - | chr1_4:52754786-52754805 | Msa0169550:CDS | 40.0% | |
| ACAGTGTGATAAGCCATTTG+AGG | - | chr1_4:52754852-52754871 | Msa0169550:exon | 40.0% | |
| AGCATAAATGTTGTTGTCCC+GGG | + | chr1_4:52754956-52754975 | None:intergenic | 40.0% | |
| CAGCATAAATGTTGTTGTCC+CGG | + | chr1_4:52754957-52754976 | None:intergenic | 40.0% | |
| ! | TTCAAAGCGCTCTGACTAAA+CGG | + | chr1_4:52755027-52755046 | None:intergenic | 40.0% |
| !! | TCAGAGCGCTTTGAAGTTTA+TGG | - | chr1_4:52755032-52755051 | Msa0169550:five_prime_UTR | 40.0% |
| GTAGTGACTATGTCCAAACG+AGG | + | chr1_4:52748432-52748451 | None:intergenic | 45.0% | |
| GCACGGACTCTTCAGATTAA+AGG | + | chr1_4:52749078-52749097 | None:intergenic | 45.0% | |
| GAGTGAAAACCTATGCAGCA+CGG | + | chr1_4:52749095-52749114 | None:intergenic | 45.0% | |
| TTCCATACGCCTTCTTGAGA+AGG | + | chr1_4:52749143-52749162 | None:intergenic | 45.0% | |
| AGGCGTATGGAAGATAAGAG+TGG | - | chr1_4:52749151-52749170 | Msa0169550:CDS | 45.0% | |
| CAAACATGGGACTCCAAGTT+TGG | + | chr1_4:52749406-52749425 | None:intergenic | 45.0% | |
| CAAACTTGGAGTCCCATGTT+TGG | - | chr1_4:52749404-52749423 | Msa0169550:CDS | 45.0% | |
| !! | CTTCCTTGATGATGCGAGAT+TGG | - | chr1_4:52749602-52749621 | Msa0169550:intron | 45.0% |
| !! | TGTGAGGTATTGTGTGGGAT+AGG | + | chr1_4:52749878-52749897 | None:intergenic | 45.0% |
| TTTCAGCAGGGGATCATTCA+TGG | + | chr1_4:52749945-52749964 | None:intergenic | 45.0% | |
| CGACCTAGTAGGAAAAAGAC+TGG | + | chr1_4:52750220-52750239 | None:intergenic | 45.0% | |
| !! | TGCTGTCCAATGGATTATGC+TGG | - | chr1_4:52750898-52750917 | Msa0169550:intron | 45.0% |
| GCAAGACCAGCATAATCCAT+TGG | + | chr1_4:52750907-52750926 | None:intergenic | 45.0% | |
| !! | TGTCGAATACGGGTGTCATT+TGG | - | chr1_4:52751046-52751065 | Msa0169550:intron | 45.0% |
| ATCGCAGGTCCTTATCAAGA+AGG | - | chr1_4:52751252-52751271 | Msa0169550:intron | 45.0% | |
| AGGTGTATGGAAGACAAGAG+TGG | - | chr1_4:52751272-52751291 | Msa0169550:intron | 45.0% | |
| !! | GAGTTCTAAGAAGGAAGCTC+AGG | - | chr1_4:52751412-52751431 | Msa0169550:intron | 45.0% |
| GGCATTATATTTGCAAGGGC+TGG | + | chr1_4:52751890-52751909 | None:intergenic | 45.0% | |
| GTGAGATTAGGTCAGTTGCT+AGG | + | chr1_4:52751918-52751937 | None:intergenic | 45.0% | |
| AGCAACTGACCTAATCTCAC+TGG | - | chr1_4:52751918-52751937 | Msa0169550:intron | 45.0% | |
| GCAACTGACCTAATCTCACT+GGG | - | chr1_4:52751919-52751938 | Msa0169550:intron | 45.0% | |
| AAAAATGAAGGGGGGCTCTT+TGG | - | chr1_4:52752024-52752043 | Msa0169550:intron | 45.0% | |
| AAAATGAAGGGGGGCTCTTT+GGG | - | chr1_4:52752025-52752044 | Msa0169550:intron | 45.0% | |
| AGAAATACCCCTGAGAGAAG+AGG | - | chr1_4:52752585-52752604 | Msa0169550:intron | 45.0% | |
| AAAACCCTCCTCTTCTCTCA+GGG | + | chr1_4:52752596-52752615 | None:intergenic | 45.0% | |
| TAAAACCCTCCTCTTCTCTC+AGG | + | chr1_4:52752597-52752616 | None:intergenic | 45.0% | |
| !! | ATAATTGATGGTGGCGGTGA+TGG | + | chr1_4:52752748-52752767 | None:intergenic | 45.0% |
| ACCTATCTCTTCATACTGCC+AGG | - | chr1_4:52752810-52752829 | Msa0169550:intron | 45.0% | |
| TCCTGGCAGTATGAAGAGAT+AGG | + | chr1_4:52752814-52752833 | None:intergenic | 45.0% | |
| CAAGGAAATGAAGGGTTTCC+TGG | + | chr1_4:52752831-52752850 | None:intergenic | 45.0% | |
| CGGTGACATCAAGGAAATGA+AGG | + | chr1_4:52752840-52752859 | None:intergenic | 45.0% | |
| CAAAAATGGCGGTGACATCA+AGG | + | chr1_4:52752849-52752868 | None:intergenic | 45.0% | |
| AACAGAACCATCAAAGGGGA+AGG | - | chr1_4:52753065-52753084 | Msa0169550:intron | 45.0% | |
| ! | GAAGGAGTATAAAGGAGACC+AGG | - | chr1_4:52753083-52753102 | Msa0169550:intron | 45.0% |
| AAGCATGCAGAACCAAACCA+TGG | - | chr1_4:52753153-52753172 | Msa0169550:intron | 45.0% | |
| TTAGCAGCAAGCTGAGAGTT+TGG | + | chr1_4:52753407-52753426 | None:intergenic | 45.0% | |
| !! | AGCTTGCTGCTAACTGCTAT+AGG | - | chr1_4:52753414-52753433 | Msa0169550:intron | 45.0% |
| TGTAACTGCACTATTGAGCC+TGG | - | chr1_4:52753578-52753597 | Msa0169550:intron | 45.0% | |
| TGTTGGATAGCGATCACAAC+AGG | - | chr1_4:52753666-52753685 | Msa0169550:intron | 45.0% | |
| ! | CCGTTTCAAGGCCTTTTAGA+TGG | + | chr1_4:52753784-52753803 | None:intergenic | 45.0% |
| AAAAGGCCTTGAAACGGACA+CGG | - | chr1_4:52753787-52753806 | Msa0169550:intron | 45.0% | |
| CTCAGATTCTCATACTTGGC+AGG | + | chr1_4:52754004-52754023 | None:intergenic | 45.0% | |
| ! | TCTGTCGCTCTTAAGTTGCA+CGG | - | chr1_4:52754040-52754059 | Msa0169550:intron | 45.0% |
| ! | TGTTGGTCCTCTTTTCCAAG+TGG | - | chr1_4:52754240-52754259 | Msa0169550:intron | 45.0% |
| TAAACCACACCAGTCCATTG+CGG | + | chr1_4:52754271-52754290 | None:intergenic | 45.0% | |
| !! | CAATGGACTGGTGTGGTTTA+TGG | - | chr1_4:52754271-52754290 | Msa0169550:intron | 45.0% |
| GGGAGTGACTCTAAATCGTT+AGG | - | chr1_4:52754292-52754311 | Msa0169550:CDS | 45.0% | |
| AATCGTTAGGCACACAAGTG+TGG | - | chr1_4:52754305-52754324 | Msa0169550:CDS | 45.0% | |
| GGGATTTGATAAAATGGGCG+AGG | - | chr1_4:52754495-52754514 | Msa0169550:intron | 45.0% | |
| GCGAGGAAGTTTCACTTCAA+TGG | - | chr1_4:52754512-52754531 | Msa0169550:intron | 45.0% | |
| ATAAATGTTGTTGTCCCGGG+GGG | + | chr1_4:52754953-52754972 | None:intergenic | 45.0% | |
| CATAAATGTTGTTGTCCCGG+GGG | + | chr1_4:52754954-52754973 | None:intergenic | 45.0% | |
| GCATAAATGTTGTTGTCCCG+GGG | + | chr1_4:52754955-52754974 | None:intergenic | 45.0% | |
| !!! | AATTTTATATATATTGTTTT+AGG | + | chr1_4:52753384-52753403 | None:intergenic | 5.0% |
| !! | TGTTGGTGTCGTGTTGGTGT+AGG | + | chr1_4:52748958-52748977 | None:intergenic | 50.0% |
| !! | CACATGTGTTGGTGTCGTGT+TGG | + | chr1_4:52748964-52748983 | None:intergenic | 50.0% |
| CATGTGTGTCAGTGTCGTGT+TGG | - | chr1_4:52749034-52749053 | Msa0169550:CDS | 50.0% | |
| ACTGCAGGTCCTTCTCAAGA+AGG | - | chr1_4:52749131-52749150 | Msa0169550:CDS | 50.0% | |
| ! | GTCCTTCTCAAGAAGGCGTA+TGG | - | chr1_4:52749138-52749157 | Msa0169550:CDS | 50.0% |
| GCACCAATCTCGCATCATCA+AGG | + | chr1_4:52749608-52749627 | None:intergenic | 50.0% | |
| TGACGATGTCTCACCCCAAT+TGG | + | chr1_4:52749782-52749801 | None:intergenic | 50.0% | |
| TGGGGTGAGACATCGTCAAT+TGG | - | chr1_4:52749784-52749803 | Msa0169550:intron | 50.0% | |
| ! | GACATGTGTGTTGGCAAGTG+AGG | + | chr1_4:52749993-52750012 | None:intergenic | 50.0% |
| GATGCTGCTGACATGTGTGT+TGG | + | chr1_4:52750002-52750021 | None:intergenic | 50.0% | |
| ! | TACTGAGTGCTGCTGTCCAA+TGG | - | chr1_4:52750888-52750907 | Msa0169550:intron | 50.0% |
| AAGTCTGGCATGGTTAGGTC+AGG | + | chr1_4:52751660-52751679 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr1_4:52751744-52751763 | Msa0169550:intron | 50.0% | |
| ! | AGGTGAATAAGTGGGGTGTC+CGG | - | chr1_4:52751854-52751873 | Msa0169550:intron | 50.0% |
| TAGGTCAGTTGCTAGGGACA+CGG | + | chr1_4:52751911-52751930 | None:intergenic | 50.0% | |
| ! | CGGACTAGATTAAATGGGCC+TGG | - | chr1_4:52752434-52752453 | Msa0169550:intron | 50.0% |
| TTGGGAGGGAGTTCGAAGAA+GGG | - | chr1_4:52752544-52752563 | Msa0169550:intron | 50.0% | |
| AATACCCCTGAGAGAAGAGG+AGG | - | chr1_4:52752588-52752607 | Msa0169550:intron | 50.0% | |
| ATACCCCTGAGAGAAGAGGA+GGG | - | chr1_4:52752589-52752608 | Msa0169550:intron | 50.0% | |
| AAACCCTCCTCTTCTCTCAG+GGG | + | chr1_4:52752595-52752614 | None:intergenic | 50.0% | |
| AAACGGGTCATCCCTTGAGA+AGG | - | chr1_4:52752993-52753012 | Msa0169550:intron | 50.0% | |
| TTGTGGGCGCAACCTTGAAA+TGG | - | chr1_4:52753748-52753767 | Msa0169550:intron | 50.0% | |
| GCGCAACCTTGAAATGGACA+GGG | - | chr1_4:52753754-52753773 | Msa0169550:intron | 50.0% | |
| CAACCTTGAAATGGACAGGG+TGG | - | chr1_4:52753757-52753776 | Msa0169550:intron | 50.0% | |
| ! | CGCTCTTAAGTTGCACGGTA+TGG | - | chr1_4:52754045-52754064 | Msa0169550:intron | 50.0% |
| CTCTTCAGTAGCAGCTGCTT+TGG | + | chr1_4:52754179-52754198 | None:intergenic | 50.0% | |
| GGGACTTCCACTTGGAAAAG+AGG | + | chr1_4:52754250-52754269 | None:intergenic | 50.0% | |
| AAACCACACCAGTCCATTGC+GGG | + | chr1_4:52754270-52754289 | None:intergenic | 50.0% | |
| ! | CTTGTTGGTAGAGGAAGACG+AGG | - | chr1_4:52754367-52754386 | Msa0169550:CDS | 50.0% |
| GTTGTTTATCGCGTCCTCCT+TGG | - | chr1_4:52754919-52754938 | Msa0169550:five_prime_UTR | 50.0% | |
| ! | GTCGTGTTGGTGTAGGACAC+CGG | + | chr1_4:52748951-52748970 | None:intergenic | 55.0% |
| ! | TGTCAGTGTCGTGTTGGTGC+CGG | - | chr1_4:52749040-52749059 | Msa0169550:CDS | 55.0% |
| CTGAAGAGTCCGTGCTGCAT+AGG | - | chr1_4:52749083-52749102 | Msa0169550:CDS | 55.0% | |
| ! | GGTGAATAAGTGGGGTGTCC+GGG | - | chr1_4:52751855-52751874 | Msa0169550:intron | 55.0% |
| ! | GTGAATAAGTGGGGTGTCCG+GGG | - | chr1_4:52751856-52751875 | Msa0169550:intron | 55.0% |
| GGTTGTTAATTGGGTGGGCC+AGG | + | chr1_4:52752455-52752474 | None:intergenic | 55.0% | |
| GTTGGGAGGGAGTTCGAAGA+AGG | - | chr1_4:52752543-52752562 | Msa0169550:intron | 55.0% | |
| TGGGAGGGAGTTCGAAGAAG+GGG | - | chr1_4:52752545-52752564 | Msa0169550:intron | 55.0% | |
| ! | GTGGCGGTGATGGTACTAAC+TGG | + | chr1_4:52752738-52752757 | None:intergenic | 55.0% |
| GACAGAACATCTCGTGCCCT+CGG | + | chr1_4:52753126-52753145 | None:intergenic | 55.0% | |
| ! | GAGGGCACGAGATGTTCTGT+CGG | - | chr1_4:52753125-52753144 | Msa0169550:intron | 55.0% |
| GGCGCAACCTTGAAATGGAC+AGG | - | chr1_4:52753753-52753772 | Msa0169550:intron | 55.0% | |
| GACAGGGTGGCCCATCTAAA+AGG | - | chr1_4:52753770-52753789 | Msa0169550:intron | 55.0% | |
| GCAAGACCGTGTCCGTTTCA+AGG | + | chr1_4:52753796-52753815 | None:intergenic | 55.0% | |
| ACGGACACGGTCTTGCAAAC+TGG | - | chr1_4:52753800-52753819 | Msa0169550:intron | 55.0% | |
| TCCAAGTGGAAGTCCCGCAA+TGG | - | chr1_4:52754254-52754273 | Msa0169550:intron | 55.0% | |
| TCCATTGCGGGACTTCCACT+TGG | + | chr1_4:52754258-52754277 | None:intergenic | 55.0% | |
| !! | CGTTTGGTGATGGTTTCGGG+AGG | - | chr1_4:52754752-52754771 | Msa0169550:intron | 55.0% |
| GTTTATCGCGTCCTCCTTGG+AGG | - | chr1_4:52754922-52754941 | Msa0169550:five_prime_UTR | 55.0% | |
| GCGCTCTGACTAAACGGCTA+GGG | + | chr1_4:52755021-52755040 | None:intergenic | 55.0% | |
| AGCGCTCTGACTAAACGGCT+AGG | + | chr1_4:52755022-52755041 | None:intergenic | 55.0% | |
| !! | GTCGTGTTGGTGCCGGACAT+TGG | - | chr1_4:52749047-52749066 | Msa0169550:CDS | 60.0% |
| GAAGCTCAGGGCTCAAACCC+TGG | - | chr1_4:52751425-52751444 | Msa0169550:intron | 60.0% | |
| AAGGGCTGGGGTTAGAACCC+CGG | + | chr1_4:52751876-52751895 | None:intergenic | 60.0% | |
| GGGCCACCCTGTCCATTTCA+AGG | + | chr1_4:52753763-52753782 | None:intergenic | 60.0% | |
| GTGGAAGTCCCGCAATGGAC+TGG | - | chr1_4:52754259-52754278 | Msa0169550:intron | 60.0% | |
| !! | AGTCCCGCAATGGACTGGTG+TGG | - | chr1_4:52754264-52754283 | Msa0169550:intron | 60.0% |
| !! | TCCTTGGAGGCACTGCCCCC+CGG | - | chr1_4:52754935-52754954 | Msa0169550:five_prime_UTR | 70.0% |
| GGGGGGCAGTGCCTCCAAGG+AGG | + | chr1_4:52754936-52754955 | None:intergenic | 75.0% | |
| !! | CCTTGGAGGCACTGCCCCCC+GGG | - | chr1_4:52754936-52754955 | Msa0169550:five_prime_UTR | 75.0% |
| ! | CCCGGGGGGCAGTGCCTCCA+AGG | + | chr1_4:52754939-52754958 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 52748385 | 52755100 | 52748385 | ID=Msa0169550;Name=Msa0169550 |
| chr1_4 | mRNA | 52748385 | 52755100 | 52748385 | ID=Msa0169550-mRNA-1;Parent=Msa0169550;Name=Msa0169550-mRNA-1;_AED=0.17;_eAED=0.17;_QI=238|0.42|0.5|1|0.85|0.75|8|223|463 |
| chr1_4 | exon | 52748385 | 52748516 | 52748385 | ID=Msa0169550-mRNA-1:exon:15712;Parent=Msa0169550-mRNA-1 |
| chr1_4 | exon | 52748566 | 52749499 | 52748566 | ID=Msa0169550-mRNA-1:exon:15711;Parent=Msa0169550-mRNA-1 |
| chr1_4 | exon | 52750297 | 52750470 | 52750297 | ID=Msa0169550-mRNA-1:exon:15710;Parent=Msa0169550-mRNA-1 |
| chr1_4 | exon | 52750705 | 52750771 | 52750705 | ID=Msa0169550-mRNA-1:exon:15709;Parent=Msa0169550-mRNA-1 |
| chr1_4 | exon | 52753862 | 52753922 | 52753862 | ID=Msa0169550-mRNA-1:exon:15708;Parent=Msa0169550-mRNA-1 |
| chr1_4 | exon | 52754060 | 52754112 | 52754060 | ID=Msa0169550-mRNA-1:exon:15707;Parent=Msa0169550-mRNA-1 |
| chr1_4 | exon | 52754287 | 52754396 | 52754287 | ID=Msa0169550-mRNA-1:exon:15706;Parent=Msa0169550-mRNA-1 |
| chr1_4 | exon | 52754779 | 52755100 | 52754779 | ID=Msa0169550-mRNA-1:exon:15705;Parent=Msa0169550-mRNA-1 |
| chr1_4 | five_prime_UTR | 52754863 | 52755100 | 52754863 | ID=Msa0169550-mRNA-1:five_prime_utr;Parent=Msa0169550-mRNA-1 |
| chr1_4 | CDS | 52754779 | 52754862 | 52754779 | ID=Msa0169550-mRNA-1:cds;Parent=Msa0169550-mRNA-1 |
| chr1_4 | CDS | 52754287 | 52754396 | 52754287 | ID=Msa0169550-mRNA-1:cds;Parent=Msa0169550-mRNA-1 |
| chr1_4 | CDS | 52754060 | 52754112 | 52754060 | ID=Msa0169550-mRNA-1:cds;Parent=Msa0169550-mRNA-1 |
| chr1_4 | CDS | 52753862 | 52753922 | 52753862 | ID=Msa0169550-mRNA-1:cds;Parent=Msa0169550-mRNA-1 |
| chr1_4 | CDS | 52750705 | 52750771 | 52750705 | ID=Msa0169550-mRNA-1:cds;Parent=Msa0169550-mRNA-1 |
| chr1_4 | CDS | 52750297 | 52750470 | 52750297 | ID=Msa0169550-mRNA-1:cds;Parent=Msa0169550-mRNA-1 |
| chr1_4 | CDS | 52748657 | 52749499 | 52748657 | ID=Msa0169550-mRNA-1:cds;Parent=Msa0169550-mRNA-1 |
| chr1_4 | three_prime_UTR | 52748566 | 52748656 | 52748566 | ID=Msa0169550-mRNA-1:three_prime_utr;Parent=Msa0169550-mRNA-1 |
| chr1_4 | three_prime_UTR | 52748385 | 52748516 | 52748385 | ID=Msa0169550-mRNA-1:three_prime_utr;Parent=Msa0169550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
