Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1296880 | XP_013446447.1 | 97.884 | 189 | 3 | 1 | 24 | 212 | 2977 | 3164 | 2.57e-117 | 378 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1296880 | A0A072TSJ6 | 97.884 | 189 | 3 | 1 | 24 | 212 | 2977 | 3164 | 1.23e-117 | 378 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013050 | Msa1296880 | -0.845031 | 5.232538e-59 | -8.615850e-47 |
| Msa0015100 | Msa1296880 | 0.813172 | 2.928066e-51 | -8.615850e-47 |
| Msa0023470 | Msa1296880 | 0.803996 | 2.670506e-49 | -8.615850e-47 |
| Msa0039330 | Msa1296880 | 0.809582 | 1.762401e-50 | -8.615850e-47 |
| Msa0044710 | Msa1296880 | 0.828234 | 1.007128e-54 | -8.615850e-47 |
| Msa0049770 | Msa1296880 | 0.813566 | 2.398478e-51 | -8.615850e-47 |
| Msa0054730 | Msa1296880 | -0.876706 | 1.128353e-68 | -8.615850e-47 |
| Msa0106370 | Msa1296880 | -0.864031 | 1.628550e-64 | -8.615850e-47 |
| Msa0111310 | Msa1296880 | 0.828941 | 6.793813e-55 | -8.615850e-47 |
| Msa0119850 | Msa1296880 | 0.839259 | 1.763459e-57 | -8.615850e-47 |
| Msa0605170 | Msa1296880 | 0.828856 | 7.124887e-55 | -8.615850e-47 |
| Msa0607340 | Msa1296880 | -0.816733 | 4.749566e-52 | -8.615850e-47 |
| Msa0607540 | Msa1296880 | 0.805352 | 1.391520e-49 | -8.615850e-47 |
| Msa0608710 | Msa1296880 | 0.825652 | 4.171544e-54 | -8.615850e-47 |
| Msa0621490 | Msa1296880 | 0.803593 | 3.237372e-49 | -8.615850e-47 |
| Msa0640380 | Msa1296880 | 0.815973 | 7.026637e-52 | -8.615850e-47 |
| Msa0647450 | Msa1296880 | -0.816451 | 5.493680e-52 | -8.615850e-47 |
| Msa0661190 | Msa1296880 | -0.866403 | 2.925630e-65 | -8.615850e-47 |
| Msa0672120 | Msa1296880 | 0.820578 | 6.369768e-53 | -8.615850e-47 |
| Msa0678820 | Msa1296880 | 0.818652 | 1.753064e-52 | -8.615850e-47 |
| Msa0704470 | Msa1296880 | -0.833245 | 5.957638e-56 | -8.615850e-47 |
| Msa0705420 | Msa1296880 | 0.802647 | 5.080672e-49 | -8.615850e-47 |
| Msa0722930 | Msa1296880 | 0.834744 | 2.510198e-56 | -8.615850e-47 |
| Msa0723140 | Msa1296880 | 0.832924 | 7.161276e-56 | -8.615850e-47 |
| Msa0761800 | Msa1296880 | 0.810287 | 1.242290e-50 | -8.615850e-47 |
| Msa0795920 | Msa1296880 | 0.846492 | 2.099795e-59 | -8.615850e-47 |
| Msa0801360 | Msa1296880 | 0.805698 | 1.177307e-49 | -8.615850e-47 |
| Msa0812760 | Msa1296880 | 0.818797 | 1.625277e-52 | -8.615850e-47 |
| Msa0839830 | Msa1296880 | 0.803501 | 3.383210e-49 | -8.615850e-47 |
| Msa0842210 | Msa1296880 | 0.812842 | 3.459475e-51 | -8.615850e-47 |
| Msa0164360 | Msa1296880 | 0.811565 | 6.568807e-51 | -8.615850e-47 |
| Msa0169550 | Msa1296880 | 0.808499 | 3.005753e-50 | -8.615850e-47 |
| Msa0178350 | Msa1296880 | 0.816894 | 4.369618e-52 | -8.615850e-47 |
| Msa0178860 | Msa1296880 | -0.809516 | 1.820413e-50 | -8.615850e-47 |
| Msa0185640 | Msa1296880 | -0.822769 | 1.984209e-53 | -8.615850e-47 |
| Msa0188630 | Msa1296880 | 0.804657 | 1.944887e-49 | -8.615850e-47 |
| Msa0215830 | Msa1296880 | 0.805043 | 1.614814e-49 | -8.615850e-47 |
| Msa0229490 | Msa1296880 | -0.815940 | 7.145175e-52 | -8.615850e-47 |
| Msa1225150 | Msa1296880 | -0.801724 | 7.866867e-49 | -8.615850e-47 |
| Msa1233500 | Msa1296880 | 0.807516 | 4.865366e-50 | -8.615850e-47 |
| Msa1241820 | Msa1296880 | 0.800203 | 1.608926e-48 | -8.615850e-47 |
| Msa1250890 | Msa1296880 | 0.806367 | 8.515716e-50 | -8.615850e-47 |
| Msa1256250 | Msa1296880 | 0.802481 | 5.497098e-49 | -8.615850e-47 |
| Msa1256540 | Msa1296880 | -0.817690 | 2.893199e-52 | -8.615850e-47 |
| Msa1260130 | Msa1296880 | 0.825521 | 4.479090e-54 | -8.615850e-47 |
| Msa1271280 | Msa1296880 | 0.810736 | 9.937571e-51 | -8.615850e-47 |
| Msa1279210 | Msa1296880 | 0.823229 | 1.550294e-53 | -8.615850e-47 |
| Msa1282920 | Msa1296880 | 0.822572 | 2.205458e-53 | -8.615850e-47 |
| Msa1288420 | Msa1296880 | 0.800524 | 1.384010e-48 | -8.615850e-47 |
| Msa1296880 | Msa1296960 | -0.817691 | 2.891307e-52 | -8.615850e-47 |
| Msa1296880 | Msa1300050 | 0.812621 | 3.865650e-51 | -8.615850e-47 |
| Msa1296880 | Msa1302190 | -0.811106 | 8.265473e-51 | -8.615850e-47 |
| Msa1296880 | Msa1304840 | 0.819638 | 1.045611e-52 | -8.615850e-47 |
| Msa1296880 | Msa1306430 | 0.821420 | 4.076096e-53 | -8.615850e-47 |
| Msa1296880 | Msa1322190 | 0.835766 | 1.385756e-56 | -8.615850e-47 |
| Msa1296880 | Msa1328700 | 0.825593 | 4.308526e-54 | -8.615850e-47 |
| Msa1296880 | Msa1335970 | -0.819543 | 1.098868e-52 | -8.615850e-47 |
| Msa1296880 | Msa1357530 | 0.830563 | 2.737049e-55 | -8.615850e-47 |
| Msa1296880 | Msa1358610 | -0.826024 | 3.403718e-54 | -8.615850e-47 |
| Msa1296880 | Msa1369530 | 0.800037 | 1.739000e-48 | -8.615850e-47 |
| Msa1296880 | Msa1392420 | 0.802924 | 4.452712e-49 | -8.615850e-47 |
| Msa1296880 | Msa1403340 | 0.800031 | 1.744301e-48 | -8.615850e-47 |
| Msa1296880 | Msa1432400 | 0.855317 | 6.843446e-62 | -8.615850e-47 |
| Msa1296880 | Msa1439530 | 0.833732 | 4.504643e-56 | -8.615850e-47 |
| Msa1296880 | Msa1440000 | 0.826245 | 3.015849e-54 | -8.615850e-47 |
| Msa1296880 | Msa1444740 | 0.828470 | 8.832640e-55 | -8.615850e-47 |
| Msa1296880 | Msa1449250 | -0.801733 | 7.834162e-49 | -8.615850e-47 |
| Msa1296880 | Msa1453780 | -0.863247 | 2.852276e-64 | -8.615850e-47 |
| Msa1296880 | Msa1454120 | 0.800550 | 1.367338e-48 | -8.615850e-47 |
| Msa1296880 | Msa1454860 | 0.801795 | 7.606697e-49 | -8.615850e-47 |
| Msa1296880 | Msa1454910 | -0.803739 | 3.019631e-49 | -8.615850e-47 |
| Msa1296880 | Msa1465960 | 0.800524 | 1.384375e-48 | -8.615850e-47 |
| Msa0373930 | Msa1296880 | 0.831651 | 1.479159e-55 | -8.615850e-47 |
| Msa0379640 | Msa1296880 | 0.800818 | 1.205456e-48 | -8.615850e-47 |
| Msa0394340 | Msa1296880 | 0.814487 | 1.502431e-51 | -8.615850e-47 |
| Msa0399340 | Msa1296880 | 0.820612 | 6.255396e-53 | -8.615850e-47 |
| Msa0409080 | Msa1296880 | 0.836887 | 7.188008e-57 | -8.615850e-47 |
| Msa0442200 | Msa1296880 | 0.857832 | 1.247944e-62 | -8.615850e-47 |
| Msa0442850 | Msa1296880 | 0.820615 | 6.246782e-53 | -8.615850e-47 |
| Msa0462590 | Msa1296880 | 0.805892 | 1.071790e-49 | -8.615850e-47 |
| Msa0475490 | Msa1296880 | 0.801121 | 1.045345e-48 | -8.615850e-47 |
| Msa0475580 | Msa1296880 | 0.809665 | 1.691393e-50 | -8.615850e-47 |
| Msa0477080 | Msa1296880 | 0.820417 | 6.933926e-53 | -8.615850e-47 |
| Msa0992490 | Msa1296880 | -0.807580 | 4.716270e-50 | -8.615850e-47 |
| Msa1012830 | Msa1296880 | 0.830873 | 2.297616e-55 | -8.615850e-47 |
| Msa1019840 | Msa1296880 | -0.801425 | 9.060087e-49 | -8.615850e-47 |
| Msa1021340 | Msa1296880 | 0.800005 | 1.764930e-48 | -8.615850e-47 |
| Msa1034360 | Msa1296880 | 0.809552 | 1.788858e-50 | -8.615850e-47 |
| Msa1054410 | Msa1296880 | 0.828834 | 7.210405e-55 | -8.615850e-47 |
| Msa1072460 | Msa1296880 | -0.821186 | 4.614993e-53 | -8.615850e-47 |
| Msa1079730 | Msa1296880 | -0.813976 | 1.948382e-51 | -8.615850e-47 |
| Msa1089040 | Msa1296880 | 0.800817 | 1.206527e-48 | -8.615850e-47 |
| Msa0240780 | Msa1296880 | 0.811482 | 6.848425e-51 | -8.615850e-47 |
| Msa0260950 | Msa1296880 | -0.802228 | 6.198273e-49 | -8.615850e-47 |
| Msa0265380 | Msa1296880 | 0.838297 | 3.126175e-57 | -8.615850e-47 |
| Msa0267310 | Msa1296880 | 0.829040 | 6.429043e-55 | -8.615850e-47 |
| Msa0270270 | Msa1296880 | 0.814638 | 1.391512e-51 | -8.615850e-47 |
| Msa0288240 | Msa1296880 | 0.803076 | 4.142603e-49 | -8.615850e-47 |
| Msa0288330 | Msa1296880 | 0.801216 | 9.998551e-49 | -8.615850e-47 |
| Msa0303360 | Msa1296880 | 0.814251 | 1.694316e-51 | -8.615850e-47 |
| Msa0318250 | Msa1296880 | 0.820102 | 8.188233e-53 | -8.615850e-47 |
| Msa0326670 | Msa1296880 | 0.824415 | 8.172913e-54 | -8.615850e-47 |
| Msa0342340 | Msa1296880 | -0.820975 | 5.163099e-53 | -8.615850e-47 |
| Msa0344830 | Msa1296880 | 0.814754 | 1.311344e-51 | -8.615850e-47 |
| Msa0352330 | Msa1296880 | 0.842821 | 2.046401e-58 | -8.615850e-47 |
| Msa1116130 | Msa1296880 | -0.814508 | 1.486611e-51 | -8.615850e-47 |
| Msa1118750 | Msa1296880 | 0.802595 | 5.207431e-49 | -8.615850e-47 |
| Msa1124540 | Msa1296880 | -0.804043 | 2.611006e-49 | -8.615850e-47 |
| Msa1132890 | Msa1296880 | 0.844820 | 5.963789e-59 | -8.615850e-47 |
| Msa1141250 | Msa1296880 | -0.802701 | 4.952319e-49 | -8.615850e-47 |
| Msa1143930 | Msa1296880 | -0.813021 | 3.159741e-51 | -8.615850e-47 |
| Msa1158670 | Msa1296880 | 0.812763 | 3.599978e-51 | -8.615850e-47 |
| Msa1171870 | Msa1296880 | 0.813250 | 2.815609e-51 | -8.615850e-47 |
| Msa1174870 | Msa1296880 | 0.800605 | 1.332458e-48 | -8.615850e-47 |
| Msa1187520 | Msa1296880 | 0.841670 | 4.127825e-58 | -8.615850e-47 |
| Msa1199560 | Msa1296880 | 0.825366 | 4.873824e-54 | -8.615850e-47 |
| Msa1203360 | Msa1296880 | 0.828501 | 8.682408e-55 | -8.615850e-47 |
| Msa1204980 | Msa1296880 | -0.818635 | 1.768850e-52 | -8.615850e-47 |
| Msa1205010 | Msa1296880 | -0.816681 | 4.877886e-52 | -8.615850e-47 |
| Msa1205130 | Msa1296880 | 0.808947 | 2.410976e-50 | -8.615850e-47 |
| Msa1208180 | Msa1296880 | 0.826640 | 2.428636e-54 | -8.615850e-47 |
| Msa1208340 | Msa1296880 | 0.811091 | 8.326993e-51 | -8.615850e-47 |
| Msa0489610 | Msa1296880 | 0.804827 | 1.792222e-49 | -8.615850e-47 |
| Msa0493630 | Msa1296880 | 0.819024 | 1.443077e-52 | -8.615850e-47 |
| Msa0500360 | Msa1296880 | 0.811221 | 7.803237e-51 | -8.615850e-47 |
| Msa0502100 | Msa1296880 | 0.830969 | 2.177245e-55 | -8.615850e-47 |
| Msa0521430 | Msa1296880 | 0.816754 | 4.698871e-52 | -8.615850e-47 |
| Msa0532790 | Msa1296880 | -0.816786 | 4.620072e-52 | -8.615850e-47 |
| Msa0540070 | Msa1296880 | 0.857430 | 1.640715e-62 | -8.615850e-47 |
| Msa0543900 | Msa1296880 | 0.819055 | 1.419877e-52 | -8.615850e-47 |
| Msa0553220 | Msa1296880 | -0.833799 | 4.334464e-56 | -8.615850e-47 |
| Msa0553460 | Msa1296880 | 0.806237 | 9.069260e-50 | -8.615850e-47 |
| Msa0558690 | Msa1296880 | 0.803459 | 3.451147e-49 | -8.615850e-47 |
| Msa0585000 | Msa1296880 | -0.822484 | 2.310956e-53 | -8.615850e-47 |
| Msa0599520 | Msa1296880 | 0.801034 | 1.089128e-48 | -8.615850e-47 |
| Msa0599770 | Msa1296880 | 0.821289 | 4.370591e-53 | -8.615850e-47 |
| Msa0843280 | Msa1296880 | 0.802693 | 4.970720e-49 | -8.615850e-47 |
| Msa0870150 | Msa1296880 | 0.806608 | 7.573343e-50 | -8.615850e-47 |
| Msa0923260 | Msa1296880 | -0.836359 | 9.800746e-57 | -8.615850e-47 |
| Msa0929740 | Msa1296880 | 0.836894 | 7.160155e-57 | -8.615850e-47 |
| Msa0944550 | Msa1296880 | 0.808932 | 2.429044e-50 | -8.615850e-47 |
| Msa0962190 | Msa1296880 | -0.855384 | 6.539705e-62 | -8.615850e-47 |
| Msa0979100 | Msa1296880 | 0.805393 | 1.363945e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1296880 | MtrunA17_Chr8g0374051 | 97.884 | 189 | 3 | 1 | 24 | 212 | 2978 | 3165 | 2.81e-121 | 378 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1296880 | AT3G50380.3 | 58.974 | 195 | 72 | 3 | 24 | 212 | 2269 | 2461 | 1.62e-71 | 236 |
| Msa1296880 | AT3G50380.1 | 58.974 | 195 | 72 | 3 | 24 | 212 | 2880 | 3072 | 2.32e-71 | 236 |
| Msa1296880 | AT3G50380.4 | 58.974 | 195 | 72 | 3 | 24 | 212 | 2933 | 3125 | 3.02e-71 | 235 |
| Msa1296880 | AT3G50380.2 | 58.974 | 195 | 72 | 3 | 24 | 212 | 2940 | 3132 | 3.02e-71 | 235 |
Find 56 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTTGGTGGTAGGTTCTTC+AGG | 0.294061 | 8_3:-56653290 | None:intergenic |
| GAGCACGGCTGTGGGACTTT+TGG | 0.301495 | 8_3:+56651354 | Msa1296880:CDS |
| GTCAGTAAGGCATTACTAAA+AGG | 0.317857 | 8_3:+56653357 | Msa1296880:CDS |
| GATATATACAACAGACAAAT+AGG | 0.333479 | 8_3:-56654411 | None:intergenic |
| GTTTGTTTCGAGCATTAAAC+TGG | 0.336077 | 8_3:+56653965 | Msa1296880:CDS |
| ATCACCAGATTTGTCATGTC+TGG | 0.339885 | 8_3:+56654083 | Msa1296880:CDS |
| CTCCACGAAGACGGCGTAAA+GGG | 0.373681 | 8_3:-56653401 | None:intergenic |
| CTCATGGCGGAGCACGGCTG+TGG | 0.375755 | 8_3:+56651345 | None:intergenic |
| AGTCAGAGTTATTGACAATC+AGG | 0.376664 | 8_3:+56652028 | Msa1296880:CDS |
| GGTTTGTTGGCATATATTGA+TGG | 0.377416 | 8_3:+56654104 | Msa1296880:CDS |
| AGTGAGATCTTGCTAGTTGC+TGG | 0.388494 | 8_3:+56654434 | Msa1296880:three_prime_UTR |
| ATTTGTCATGTCTGGTTTGT+TGG | 0.390355 | 8_3:+56654091 | Msa1296880:CDS |
| AAGTGAACATCATTCAGAAA+TGG | 0.405827 | 8_3:+56654057 | Msa1296880:CDS |
| CACTCTCCGCACTACAGGAT+TGG | 0.409832 | 8_3:-56654147 | None:intergenic |
| TGGGAATACTACGGCATAAA+CGG | 0.412578 | 8_3:-56654127 | None:intergenic |
| AACCCTTTACGCCGTCTTCG+TGG | 0.413178 | 8_3:+56653399 | Msa1296880:CDS |
| AGTGAACATCATTCAGAAAT+GGG | 0.416402 | 8_3:+56654058 | Msa1296880:CDS |
| CAGCATGTCAAAGCACAAAC+GGG | 0.446317 | 8_3:-56654282 | None:intergenic |
| TGACATCATGGATCGTGTTA+AGG | 0.462099 | 8_3:+56653326 | Msa1296880:CDS |
| CAAACCAGACATGACAAATC+TGG | 0.463370 | 8_3:-56654087 | None:intergenic |
| TAAGGAGTTCCTTGTCAGTA+AGG | 0.474960 | 8_3:+56653344 | Msa1296880:CDS |
| ACTCTCCGCACTACAGGATT+GGG | 0.477236 | 8_3:-56654146 | None:intergenic |
| TAAGAGAATGATTTGGTGGT+AGG | 0.484006 | 8_3:-56653299 | None:intergenic |
| CTGCTGCAGCTATACATTGA+AGG | 0.486592 | 8_3:+56651957 | Msa1296880:intron |
| TCAGCATGTCAAAGCACAAA+CGG | 0.488313 | 8_3:-56654283 | None:intergenic |
| TCTCCACGAAGACGGCGTAA+AGG | 0.490848 | 8_3:-56653402 | None:intergenic |
| TTCTCTTATCAATGACATCA+TGG | 0.497353 | 8_3:+56653314 | Msa1296880:CDS |
| CTAACCACTCTCCGCACTAC+AGG | 0.497577 | 8_3:-56654152 | None:intergenic |
| GTAGTGCGGAGAGTGGTTAG+TGG | 0.508981 | 8_3:+56654155 | Msa1296880:CDS |
| AAACTGTATCCAGCATGGCT+TGG | 0.517630 | 8_3:-56651986 | None:intergenic |
| TCGTTGCAGGAATGGAGAAT+AGG | 0.520120 | 8_3:+56653867 | Msa1296880:intron |
| TTGATAAGAGAATGATTTGG+TGG | 0.528675 | 8_3:-56653303 | None:intergenic |
| TCATGGCGGAGCACGGCTGT+GGG | 0.530006 | 8_3:+56651346 | None:intergenic |
| AAGCAGTAAAATATGATGGA+TGG | 0.535727 | 8_3:+56654255 | Msa1296880:three_prime_UTR |
| GCTTGAACAGCTACAACTGT+AGG | 0.545836 | 8_3:-56654220 | None:intergenic |
| TCGCACAATGTCAATAAAGT+TGG | 0.546000 | 8_3:-56653891 | None:intergenic |
| TTACAGTTTCTCCACGAAGA+CGG | 0.553440 | 8_3:-56653410 | None:intergenic |
| AGGATATATCCAAGCCATGC+TGG | 0.555627 | 8_3:+56651977 | Msa1296880:CDS |
| TTAGTAATGCCTTACTGACA+AGG | 0.560863 | 8_3:-56653353 | None:intergenic |
| AATACGCATACTGCGAAGGC+AGG | 0.567526 | 8_3:+56653935 | Msa1296880:CDS |
| CGGAGGAGAACTGCAGTGGA+TGG | 0.573437 | 8_3:+56651385 | Msa1296880:CDS |
| AAAGGGTTCGAAATAGTTGA+GGG | 0.573656 | 8_3:-56653384 | None:intergenic |
| CCTCTGCTCATGGCGGAGCA+CGG | 0.575989 | 8_3:+56651339 | None:intergenic |
| TCATTGATAAGAGAATGATT+TGG | 0.577887 | 8_3:-56653306 | None:intergenic |
| CTGGAAAAGAAGTCATCAGA+GGG | 0.588810 | 8_3:+56653984 | Msa1296880:CDS |
| TAAAGGGTTCGAAATAGTTG+AGG | 0.595164 | 8_3:-56653385 | None:intergenic |
| TTGCAATACGCATACTGCGA+AGG | 0.602247 | 8_3:+56653931 | Msa1296880:CDS |
| CTACAGGATTGGGAATACTA+CGG | 0.607939 | 8_3:-56654136 | None:intergenic |
| CAATCCTGTAGTGCGGAGAG+TGG | 0.610104 | 8_3:+56654148 | Msa1296880:CDS |
| TCTATAAACTGTATCCAGCA+TGG | 0.621337 | 8_3:-56651991 | None:intergenic |
| TTTGCGGAGGAGAACTGCAG+TGG | 0.626635 | 8_3:+56651381 | Msa1296880:CDS |
| GTGAACATCATTCAGAAATG+GGG | 0.632675 | 8_3:+56654059 | Msa1296880:CDS |
| ACTGGAAAAGAAGTCATCAG+AGG | 0.642641 | 8_3:+56653983 | Msa1296880:CDS |
| GAAAAGAAGTCATCAGAGGG+TGG | 0.679469 | 8_3:+56653987 | Msa1296880:CDS |
| AGCATGTCAAAGCACAAACG+GGG | 0.684071 | 8_3:-56654281 | None:intergenic |
| GTATTCCCAATCCTGTAGTG+CGG | 0.700850 | 8_3:+56654141 | Msa1296880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTATTTGATTTTAACA+TGG | + | chr8_3:56652231-56652250 | Msa1296880:intron | 10.0% |
| !!! | TAATTATTTGATTTTAACAT+GGG | + | chr8_3:56652232-56652251 | Msa1296880:intron | 10.0% |
| !! | GAACAATATATATTAAATTA+TGG | + | chr8_3:56652280-56652299 | Msa1296880:intron | 10.0% |
| !!! | AGTTTGTTGAAAAATATATT+AGG | - | chr8_3:56651617-56651636 | None:intergenic | 15.0% |
| !! | ATATATTAAATTATGGATGA+AGG | + | chr8_3:56652287-56652306 | Msa1296880:intron | 15.0% |
| !!! | GAAAATAGTTTGATATATTT+TGG | + | chr8_3:56652465-56652484 | Msa1296880:intron | 15.0% |
| !!! | TTTTTCTTTCTTTCTTAAAT+AGG | - | chr8_3:56653216-56653235 | None:intergenic | 15.0% |
| !! | TTAACTTAGTTAACATTGAA+AGG | - | chr8_3:56651809-56651828 | None:intergenic | 20.0% |
| !!! | GATTTTTTAAATTCTTGATG+AGG | + | chr8_3:56651907-56651926 | Msa1296880:intron | 20.0% |
| !! | AAACATCTAATTAGTTATTG+TGG | - | chr8_3:56651934-56651953 | None:intergenic | 20.0% |
| !! | ACAATAACTAATTAGATGTT+TGG | + | chr8_3:56651933-56651952 | Msa1296880:intron | 20.0% |
| !! | AAAAGTGAAAACAGTAAAAA+AGG | + | chr8_3:56652520-56652539 | Msa1296880:intron | 20.0% |
| !! | AAAGTGAAAACAGTAAAAAA+GGG | + | chr8_3:56652521-56652540 | Msa1296880:intron | 20.0% |
| !!! | ATTACTTTTTTCTGTGTTTT+GGG | + | chr8_3:56652929-56652948 | Msa1296880:intron | 20.0% |
| !! | TTAACGAAGAACATATTATT+TGG | + | chr8_3:56653025-56653044 | Msa1296880:intron | 20.0% |
| !! | TAACGAAGAACATATTATTT+GGG | + | chr8_3:56653026-56653045 | Msa1296880:intron | 20.0% |
| !! | GAAACAAATCAAATACAATT+TGG | - | chr8_3:56653744-56653763 | None:intergenic | 20.0% |
| !!! | TATTTGATTTGTTTCTGAAA+AGG | + | chr8_3:56653749-56653768 | Msa1296880:intron | 20.0% |
| !!! | ATTTGATTTGTTTCTGAAAA+GGG | + | chr8_3:56653750-56653769 | Msa1296880:intron | 20.0% |
| ! | TAGAAAATAGATTAGAGACA+AGG | + | chr8_3:56651515-56651534 | Msa1296880:intron | 25.0% |
| ! | AGAAAATAGATTAGAGACAA+GGG | + | chr8_3:56651516-56651535 | Msa1296880:intron | 25.0% |
| ! | GGTATTGTATTTATATCAGA+GGG | - | chr8_3:56651567-56651586 | None:intergenic | 25.0% |
| ! | TGGTATTGTATTTATATCAG+AGG | - | chr8_3:56651568-56651587 | None:intergenic | 25.0% |
| ! | TGCTAATAGTTGAATATTCT+AGG | - | chr8_3:56651722-56651741 | None:intergenic | 25.0% |
| !! | TTTTAAGCTTGACATTAATG+TGG | + | chr8_3:56652102-56652121 | Msa1296880:intron | 25.0% |
| ! | ATTGAAAGCAGATAATAAAG+TGG | - | chr8_3:56652435-56652454 | None:intergenic | 25.0% |
| !!! | TTACTGTTTTCACTTTTAGA+GGG | - | chr8_3:56652711-56652730 | None:intergenic | 25.0% |
| !!! | TTTACTGTTTTCACTTTTAG+AGG | - | chr8_3:56652712-56652731 | None:intergenic | 25.0% |
| !!! | GATTACTTTTTTCTGTGTTT+TGG | + | chr8_3:56652928-56652947 | Msa1296880:intron | 25.0% |
| !!! | TTACTTTTTTCTGTGTTTTG+GGG | + | chr8_3:56652930-56652949 | Msa1296880:intron | 25.0% |
| ! | AACGAAGAACATATTATTTG+GGG | + | chr8_3:56653027-56653046 | Msa1296880:intron | 25.0% |
| ! | AAAGTAATCCAAATACTGTA+TGG | + | chr8_3:56653236-56653255 | Msa1296880:intron | 25.0% |
| ! | TCATTGATAAGAGAATGATT+TGG | - | chr8_3:56653309-56653328 | None:intergenic | 25.0% |
| ! | AGTGATTAAAGATGATAAGT+AGG | - | chr8_3:56653510-56653529 | None:intergenic | 25.0% |
| ! | TTTCTGACATTTCATGATTA+TGG | + | chr8_3:56653530-56653549 | Msa1296880:intron | 25.0% |
| !! | AGAATGCAAAGTATTAGTTT+GGG | - | chr8_3:56653650-56653669 | None:intergenic | 25.0% |
| !! | AAGAATGCAAAGTATTAGTT+TGG | - | chr8_3:56653651-56653670 | None:intergenic | 25.0% |
| ! | AAACTAATACTTTGCATTCT+TGG | + | chr8_3:56653650-56653669 | Msa1296880:intron | 25.0% |
| !! | AAATGTTACACGTGATTTTA+CGG | + | chr8_3:56653703-56653722 | Msa1296880:intron | 25.0% |
| !!! | GGATTTATTTTTCATCATGT+TGG | - | chr8_3:56654202-56654221 | None:intergenic | 25.0% |
| ! | CAAAAAGCAGTAAAATATGA+TGG | + | chr8_3:56654251-56654270 | Msa1296880:three_prime_UTR | 25.0% |
| ! | GATATATACAACAGACAAAT+AGG | - | chr8_3:56654414-56654433 | None:intergenic | 25.0% |
| TCTCGATTTCAACTCAAAAT+AGG | + | chr8_3:56651540-56651559 | Msa1296880:intron | 30.0% | |
| CTCGATTTCAACTCAAAATA+GGG | + | chr8_3:56651541-56651560 | Msa1296880:intron | 30.0% | |
| !! | TACTGTTTTCACTTTTAGAG+GGG | - | chr8_3:56652710-56652729 | None:intergenic | 30.0% |
| !! | CTAGCTTTTTAGATTTTGTG+GGG | - | chr8_3:56652808-56652827 | None:intergenic | 30.0% |
| !! | CCTAGCTTTTTAGATTTTGT+GGG | - | chr8_3:56652809-56652828 | None:intergenic | 30.0% |
| !! | ACCTAGCTTTTTAGATTTTG+TGG | - | chr8_3:56652810-56652829 | None:intergenic | 30.0% |
| ACGAAGAACATATTATTTGG+GGG | + | chr8_3:56653028-56653047 | Msa1296880:intron | 30.0% | |
| CAAGAATAACAATGCAAAAC+AGG | - | chr8_3:56653090-56653109 | None:intergenic | 30.0% | |
| !! | GCATTGTTATTCTTGAGTTT+TGG | + | chr8_3:56653095-56653114 | Msa1296880:intron | 30.0% |
| !! | CTTTTATTTGTTTCTCGTAG+AGG | + | chr8_3:56653140-56653159 | Msa1296880:intron | 30.0% |
| CGGAAAATTACCAAAGAAAA+AGG | - | chr8_3:56653172-56653191 | None:intergenic | 30.0% | |
| AAAGAAATCCATTAAGAACG+CGG | - | chr8_3:56653192-56653211 | None:intergenic | 30.0% | |
| ! | TTGATAAGAGAATGATTTGG+TGG | - | chr8_3:56653306-56653325 | None:intergenic | 30.0% |
| TTCTCTTATCAATGACATCA+TGG | + | chr8_3:56653314-56653333 | Msa1296880:CDS | 30.0% | |
| TTCATGATTATGGATGATGA+TGG | + | chr8_3:56653540-56653559 | Msa1296880:intron | 30.0% | |
| TCATGATTATGGATGATGAT+GGG | + | chr8_3:56653541-56653560 | Msa1296880:intron | 30.0% | |
| AAATTGGAAATAGAGAACAC+AGG | - | chr8_3:56653570-56653589 | None:intergenic | 30.0% | |
| ! | TTTTGGATAATAGAGTTTGC+AGG | - | chr8_3:56654029-56654048 | None:intergenic | 30.0% |
| AAGTGAACATCATTCAGAAA+TGG | + | chr8_3:56654057-56654076 | Msa1296880:CDS | 30.0% | |
| AGTGAACATCATTCAGAAAT+GGG | + | chr8_3:56654058-56654077 | Msa1296880:CDS | 30.0% | |
| ! | AAGCAGTAAAATATGATGGA+TGG | + | chr8_3:56654255-56654274 | Msa1296880:three_prime_UTR | 30.0% |
| ACAACTGCTAGTAAGTTGTA+AGG | + | chr8_3:56651768-56651787 | Msa1296880:intron | 35.0% | |
| TCTATAAACTGTATCCAGCA+TGG | - | chr8_3:56651994-56652013 | None:intergenic | 35.0% | |
| AGTCAGAGTTATTGACAATC+AGG | + | chr8_3:56652028-56652047 | Msa1296880:CDS | 35.0% | |
| ATAGATGGTGAAGTATGCAT+AGG | + | chr8_3:56652074-56652093 | Msa1296880:intron | 35.0% | |
| ! | AAAATTGCGTTTTCATGCCT+TGG | + | chr8_3:56652126-56652145 | Msa1296880:intron | 35.0% |
| ! | AAATTGCGTTTTCATGCCTT+GGG | + | chr8_3:56652127-56652146 | Msa1296880:intron | 35.0% |
| ! | ACATGGGAAAGCATAGAAAT+TGG | + | chr8_3:56652248-56652267 | Msa1296880:intron | 35.0% |
| AATTATGGATGAAGGATGCT+AGG | + | chr8_3:56652295-56652314 | Msa1296880:intron | 35.0% | |
| GAAACCAAATAGACTCTCAA+CGG | + | chr8_3:56652750-56652769 | Msa1296880:intron | 35.0% | |
| CCCACAAAATCTAAAAAGCT+AGG | + | chr8_3:56652806-56652825 | Msa1296880:intron | 35.0% | |
| ACAAAATTCCTCCAGTTACA+TGG | - | chr8_3:56652877-56652896 | None:intergenic | 35.0% | |
| ! | GTAACTGGAGGAATTTTGTA+CGG | + | chr8_3:56652878-56652897 | Msa1296880:intron | 35.0% |
| ! | TAACTGGAGGAATTTTGTAC+GGG | + | chr8_3:56652879-56652898 | Msa1296880:intron | 35.0% |
| CGAAGAACATATTATTTGGG+GGG | + | chr8_3:56653029-56653048 | Msa1296880:intron | 35.0% | |
| GAAGAACATATTATTTGGGG+GGG | + | chr8_3:56653030-56653049 | Msa1296880:intron | 35.0% | |
| AAGAACATATTATTTGGGGG+GGG | + | chr8_3:56653031-56653050 | Msa1296880:intron | 35.0% | |
| TTTCTCATCTGCATTGAGAT+TGG | + | chr8_3:56653060-56653079 | Msa1296880:intron | 35.0% | |
| TTCTCATCTGCATTGAGATT+GGG | + | chr8_3:56653061-56653080 | Msa1296880:intron | 35.0% | |
| ! | GTAATTTTCCGCGTTCTTAA+TGG | + | chr8_3:56653181-56653200 | Msa1296880:intron | 35.0% |
| CATCACAACCATACAGTATT+TGG | - | chr8_3:56653247-56653266 | None:intergenic | 35.0% | |
| CAAATACTGTATGGTTGTGA+TGG | + | chr8_3:56653245-56653264 | Msa1296880:intron | 35.0% | |
| !! | TAAGAGAATGATTTGGTGGT+AGG | - | chr8_3:56653302-56653321 | None:intergenic | 35.0% |
| TTAGTAATGCCTTACTGACA+AGG | - | chr8_3:56653356-56653375 | None:intergenic | 35.0% | |
| ! | GTCAGTAAGGCATTACTAAA+AGG | + | chr8_3:56653357-56653376 | Msa1296880:CDS | 35.0% |
| AAAGGGTTCGAAATAGTTGA+GGG | - | chr8_3:56653387-56653406 | None:intergenic | 35.0% | |
| TAAAGGGTTCGAAATAGTTG+AGG | - | chr8_3:56653388-56653407 | None:intergenic | 35.0% | |
| ! | GAGAACTCGATGCTTTAAAT+TGG | - | chr8_3:56653586-56653605 | None:intergenic | 35.0% |
| ATGACTGGGAAGATTACTTA+AGG | - | chr8_3:56653820-56653839 | None:intergenic | 35.0% | |
| !! | ATGTACGAAGACATTGATTC+AGG | + | chr8_3:56653838-56653857 | Msa1296880:intron | 35.0% |
| TCGCACAATGTCAATAAAGT+TGG | - | chr8_3:56653894-56653913 | None:intergenic | 35.0% | |
| GTTTGTTTCGAGCATTAAAC+TGG | + | chr8_3:56653965-56653984 | Msa1296880:CDS | 35.0% | |
| ! | TGTTCACTTTCTGCACTTTT+TGG | - | chr8_3:56654046-56654065 | None:intergenic | 35.0% |
| GTGAACATCATTCAGAAATG+GGG | + | chr8_3:56654059-56654078 | Msa1296880:CDS | 35.0% | |
| ! | ATTTGTCATGTCTGGTTTGT+TGG | + | chr8_3:56654091-56654110 | Msa1296880:CDS | 35.0% |
| !! | GGTTTGTTGGCATATATTGA+TGG | + | chr8_3:56654104-56654123 | Msa1296880:CDS | 35.0% |
| AGGCTCAAAGTCAAAGGAAA+AGG | + | chr8_3:56651489-56651508 | Msa1296880:intron | 40.0% | |
| GCATTTATTGCATACGCATG+TGG | - | chr8_3:56651588-56651607 | None:intergenic | 40.0% | |
| TCAGTGTAATCAGTCTACTC+TGG | + | chr8_3:56651658-56651677 | Msa1296880:intron | 40.0% | |
| GAGCTATGTGTACACATAGA+TGG | + | chr8_3:56652059-56652078 | Msa1296880:intron | 40.0% | |
| GGAGAACACTAGCACATATT+TGG | + | chr8_3:56652148-56652167 | Msa1296880:intron | 40.0% | |
| TTGGACACAAGTGAAAACAG+TGG | + | chr8_3:56652484-56652503 | Msa1296880:intron | 40.0% | |
| AACAGTAAAAAAGGGCAACC+CGG | + | chr8_3:56652529-56652548 | Msa1296880:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | chr8_3:56652589-56652608 | None:intergenic | 40.0% | |
| TCCTGTGTAAAAACAGGGTA+AGG | - | chr8_3:56652615-56652634 | None:intergenic | 40.0% | |
| !!! | TTACCCTGTTTTTACACAGG+AGG | + | chr8_3:56652614-56652633 | Msa1296880:intron | 40.0% |
| GTTGTTGTCATGTGACTGAA+AGG | - | chr8_3:56652665-56652684 | None:intergenic | 40.0% | |
| ! | AACTGGAGGAATTTTGTACG+GGG | + | chr8_3:56652880-56652899 | Msa1296880:intron | 40.0% |
| ! | TGCGCAAGAATTTTGCCTAA+GGG | + | chr8_3:56652962-56652981 | Msa1296880:intron | 40.0% |
| AGAACATATTATTTGGGGGG+GGG | + | chr8_3:56653032-56653051 | Msa1296880:intron | 40.0% | |
| ! | GAGGACACATCCTTTTTCTT+TGG | + | chr8_3:56653159-56653178 | Msa1296880:intron | 40.0% |
| ATACTGTATGGTTGTGATGG+AGG | + | chr8_3:56653248-56653267 | Msa1296880:intron | 40.0% | |
| TGACATCATGGATCGTGTTA+AGG | + | chr8_3:56653326-56653345 | Msa1296880:CDS | 40.0% | |
| TAAGGAGTTCCTTGTCAGTA+AGG | + | chr8_3:56653344-56653363 | Msa1296880:CDS | 40.0% | |
| TTACAGTTTCTCCACGAAGA+CGG | - | chr8_3:56653413-56653432 | None:intergenic | 40.0% | |
| AAGTTCTGTTCTGTTGAGCA+TGG | + | chr8_3:56653431-56653450 | Msa1296880:intron | 40.0% | |
| TTGCTGTATGCAATCAGCAA+TGG | + | chr8_3:56653788-56653807 | Msa1296880:intron | 40.0% | |
| CTGGGAAGATTACTTAAGGA+TGG | - | chr8_3:56653816-56653835 | None:intergenic | 40.0% | |
| CAATGTCTTCGTACATGACT+GGG | - | chr8_3:56653834-56653853 | None:intergenic | 40.0% | |
| TCAATGTCTTCGTACATGAC+TGG | - | chr8_3:56653835-56653854 | None:intergenic | 40.0% | |
| ACTGGAAAAGAAGTCATCAG+AGG | + | chr8_3:56653983-56654002 | Msa1296880:CDS | 40.0% | |
| CTGGAAAAGAAGTCATCAGA+GGG | + | chr8_3:56653984-56654003 | Msa1296880:CDS | 40.0% | |
| ATCACCAGATTTGTCATGTC+TGG | + | chr8_3:56654083-56654102 | Msa1296880:CDS | 40.0% | |
| CAAACCAGACATGACAAATC+TGG | - | chr8_3:56654090-56654109 | None:intergenic | 40.0% | |
| TGGGAATACTACGGCATAAA+CGG | - | chr8_3:56654130-56654149 | None:intergenic | 40.0% | |
| CTACAGGATTGGGAATACTA+CGG | - | chr8_3:56654139-56654158 | None:intergenic | 40.0% | |
| TCAGCATGTCAAAGCACAAA+CGG | - | chr8_3:56654286-56654305 | None:intergenic | 40.0% | |
| ! | TGGGACTTTTGGTCTCTTTG+CGG | + | chr8_3:56651365-56651384 | Msa1296880:CDS | 45.0% |
| !! | GCTGTTTTGTGGTTGCAAGA+CGG | + | chr8_3:56651433-56651452 | Msa1296880:intron | 45.0% |
| GTGTAATCAGTCTACTCTGG+TGG | + | chr8_3:56651661-56651680 | Msa1296880:intron | 45.0% | |
| CTTCAATGTATAGCTGCAGC+AGG | - | chr8_3:56651959-56651978 | None:intergenic | 45.0% | |
| CTGCTGCAGCTATACATTGA+AGG | + | chr8_3:56651957-56651976 | Msa1296880:intron | 45.0% | |
| AGGATATATCCAAGCCATGC+TGG | + | chr8_3:56651977-56651996 | Msa1296880:CDS | 45.0% | |
| AAACTGTATCCAGCATGGCT+TGG | - | chr8_3:56651989-56652008 | None:intergenic | 45.0% | |
| TATGTGCTAGTGTTCTCCCA+AGG | - | chr8_3:56652146-56652165 | None:intergenic | 45.0% | |
| ! | ATGCTAGGCACTAGTCTGTT+GGG | + | chr8_3:56652310-56652329 | Msa1296880:intron | 45.0% |
| GCGTACAATACACCAAATGG+TGG | - | chr8_3:56652590-56652609 | None:intergenic | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | - | chr8_3:56652593-56652612 | None:intergenic | 45.0% | |
| !!! | GCCTTACCCTGTTTTTACAC+AGG | + | chr8_3:56652611-56652630 | Msa1296880:intron | 45.0% |
| CAGCCTCCTGTGTAAAAACA+GGG | - | chr8_3:56652620-56652639 | None:intergenic | 45.0% | |
| ACAGCCTCCTGTGTAAAAAC+AGG | - | chr8_3:56652621-56652640 | None:intergenic | 45.0% | |
| TCATGTGACTGAAAGGTCAC+GGG | - | chr8_3:56652658-56652677 | None:intergenic | 45.0% | |
| GTCATGTGACTGAAAGGTCA+CGG | - | chr8_3:56652659-56652678 | None:intergenic | 45.0% | |
| !! | CACTTTTAGAGGGGTAACCT+TGG | - | chr8_3:56652701-56652720 | None:intergenic | 45.0% |
| CCAACCGTTGAGAGTCTATT+TGG | - | chr8_3:56652757-56652776 | None:intergenic | 45.0% | |
| CCAAATAGACTCTCAACGGT+TGG | + | chr8_3:56652754-56652773 | Msa1296880:intron | 45.0% | |
| !! | ATGGGCCTTTGGTTTGAAAG+AGG | + | chr8_3:56652780-56652799 | Msa1296880:intron | 45.0% |
| GGGTACCTCTTTCAAACCAA+AGG | - | chr8_3:56652788-56652807 | None:intergenic | 45.0% | |
| TTAGCAAGAGCGAGATACTG+AGG | + | chr8_3:56652829-56652848 | Msa1296880:intron | 45.0% | |
| AAGAGCGAGATACTGAGGTA+GGG | + | chr8_3:56652834-56652853 | Msa1296880:intron | 45.0% | |
| AGATACTGAGGTAGGGAATG+TGG | + | chr8_3:56652841-56652860 | Msa1296880:intron | 45.0% | |
| GATACTGAGGTAGGGAATGT+GGG | + | chr8_3:56652842-56652861 | Msa1296880:intron | 45.0% | |
| ATACTGAGGTAGGGAATGTG+GGG | + | chr8_3:56652843-56652862 | Msa1296880:intron | 45.0% | |
| ! | GAATTTTGTACGGGGTAGTG+AGG | + | chr8_3:56652888-56652907 | Msa1296880:intron | 45.0% |
| ! | CTGCGCAAGAATTTTGCCTA+AGG | + | chr8_3:56652961-56652980 | Msa1296880:intron | 45.0% |
| ! | GCGCAAGAATTTTGCCTAAG+GGG | + | chr8_3:56652963-56652982 | Msa1296880:intron | 45.0% |
| GATGGAGGTTTGCGATGTTT+AGG | + | chr8_3:56653263-56653282 | Msa1296880:intron | 45.0% | |
| !! | GATTTGGTGGTAGGTTCTTC+AGG | - | chr8_3:56653293-56653312 | None:intergenic | 45.0% |
| ATTCAGGAACTCTTCGTTGC+AGG | + | chr8_3:56653854-56653873 | Msa1296880:intron | 45.0% | |
| TCGTTGCAGGAATGGAGAAT+AGG | + | chr8_3:56653867-56653886 | Msa1296880:intron | 45.0% | |
| TTGCAATACGCATACTGCGA+AGG | + | chr8_3:56653931-56653950 | Msa1296880:CDS | 45.0% | |
| GAAAAGAAGTCATCAGAGGG+TGG | + | chr8_3:56653987-56654006 | Msa1296880:CDS | 45.0% | |
| GTATTCCCAATCCTGTAGTG+CGG | + | chr8_3:56654141-56654160 | Msa1296880:CDS | 45.0% | |
| GCTTGAACAGCTACAACTGT+AGG | - | chr8_3:56654223-56654242 | None:intergenic | 45.0% | |
| AGCATGTCAAAGCACAAACG+GGG | - | chr8_3:56654284-56654303 | None:intergenic | 45.0% | |
| CAGCATGTCAAAGCACAAAC+GGG | - | chr8_3:56654285-56654304 | None:intergenic | 45.0% | |
| ! | GACTTTTGGTCTCTTTGCGG+AGG | + | chr8_3:56651368-56651387 | Msa1296880:CDS | 50.0% |
| !!! | TCGCTGCTGTTGCTGTTTTG+TGG | + | chr8_3:56651422-56651441 | Msa1296880:intron | 50.0% |
| TGTGGTTGCAAGACGGAAAG+AGG | + | chr8_3:56651440-56651459 | Msa1296880:intron | 50.0% | |
| CAAGACGGAAAGAGGCAAAG+TGG | + | chr8_3:56651448-56651467 | Msa1296880:intron | 50.0% | |
| CGGAAAGAGGCAAAGTGGTT+TGG | + | chr8_3:56651453-56651472 | Msa1296880:intron | 50.0% | |
| !! | AGGCAAAGTGGTTTGGTTGC+AGG | + | chr8_3:56651460-56651479 | Msa1296880:intron | 50.0% |
| !! | CAAAGTGGTTTGGTTGCAGG+CGG | + | chr8_3:56651463-56651482 | Msa1296880:intron | 50.0% |
| !! | AAAGTGGTTTGGTTGCAGGC+GGG | + | chr8_3:56651464-56651483 | Msa1296880:intron | 50.0% |
| CGGGAAAGGCTCAAAGTCAA+AGG | + | chr8_3:56651483-56651502 | Msa1296880:intron | 50.0% | |
| ! | GATGCTAGGCACTAGTCTGT+TGG | + | chr8_3:56652309-56652328 | Msa1296880:intron | 50.0% |
| ! | TGCTAGGCACTAGTCTGTTG+GGG | + | chr8_3:56652311-56652330 | Msa1296880:intron | 50.0% |
| ! | TTACACAGGAGGCTGTTTCC+AGG | + | chr8_3:56652625-56652644 | Msa1296880:intron | 50.0% |
| CAACTTTACCAGTTGCGCCA+AGG | + | chr8_3:56652681-56652700 | Msa1296880:intron | 50.0% | |
| ! | ACTCTCAACGGTTGGCTCAT+GGG | + | chr8_3:56652762-56652781 | Msa1296880:intron | 50.0% |
| CAAGAGCGAGATACTGAGGT+AGG | + | chr8_3:56652833-56652852 | Msa1296880:intron | 50.0% | |
| AGGTGAGACCATGTAACTGG+AGG | + | chr8_3:56652866-56652885 | Msa1296880:intron | 50.0% | |
| GGAACTCTTCGTTGCAGGAA+TGG | + | chr8_3:56653859-56653878 | Msa1296880:intron | 50.0% | |
| AATACGCATACTGCGAAGGC+AGG | + | chr8_3:56653935-56653954 | Msa1296880:CDS | 50.0% | |
| ACTCTCCGCACTACAGGATT+GGG | - | chr8_3:56654149-56654168 | None:intergenic | 50.0% | |
| TTTGCGGAGGAGAACTGCAG+TGG | + | chr8_3:56651381-56651400 | Msa1296880:CDS | 55.0% | |
| AGTGGATGGCAGCAGAGTGT+AGG | + | chr8_3:56651399-56651418 | Msa1296880:intron | 55.0% | |
| ! | GCTAGGCACTAGTCTGTTGG+GGG | + | chr8_3:56652312-56652331 | Msa1296880:intron | 55.0% |
| ! | CTAGGCACTAGTCTGTTGGG+GGG | + | chr8_3:56652313-56652332 | Msa1296880:intron | 55.0% |
| ! | CACTAGTCTGTTGGGGGGAA+GGG | + | chr8_3:56652318-56652337 | Msa1296880:intron | 55.0% |
| TCTGTTGGGGGGAAGGGAAA+AGG | + | chr8_3:56652324-56652343 | Msa1296880:intron | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr8_3:56652646-56652665 | None:intergenic | 55.0% | |
| ! | GACTCTCAACGGTTGGCTCA+TGG | + | chr8_3:56652761-56652780 | Msa1296880:intron | 55.0% |
| GGGAGGTGAGACCATGTAAC+TGG | + | chr8_3:56652863-56652882 | Msa1296880:intron | 55.0% | |
| CGGGGTAGTGAGGATAGAGA+AGG | + | chr8_3:56652898-56652917 | Msa1296880:intron | 55.0% | |
| ACGAGAGTGATGCTCCCCTT+AGG | - | chr8_3:56652980-56652999 | None:intergenic | 55.0% | |
| AACCCTTTACGCCGTCTTCG+TGG | + | chr8_3:56653399-56653418 | Msa1296880:CDS | 55.0% | |
| CTCCACGAAGACGGCGTAAA+GGG | - | chr8_3:56653404-56653423 | None:intergenic | 55.0% | |
| TCTCCACGAAGACGGCGTAA+AGG | - | chr8_3:56653405-56653424 | None:intergenic | 55.0% | |
| CACTCTCCGCACTACAGGAT+TGG | - | chr8_3:56654150-56654169 | None:intergenic | 55.0% | |
| CAATCCTGTAGTGCGGAGAG+TGG | + | chr8_3:56654148-56654167 | Msa1296880:CDS | 55.0% | |
| CTAACCACTCTCCGCACTAC+AGG | - | chr8_3:56654155-56654174 | None:intergenic | 55.0% | |
| GTAGTGCGGAGAGTGGTTAG+TGG | + | chr8_3:56654155-56654174 | Msa1296880:CDS | 55.0% | |
| ! | GAGCACGGCTGTGGGACTTT+TGG | + | chr8_3:56651354-56651373 | Msa1296880:CDS | 60.0% |
| CGGAGGAGAACTGCAGTGGA+TGG | + | chr8_3:56651385-56651404 | Msa1296880:CDS | 60.0% | |
| ! | GGTTTGGTTGCAGGCGGGAA+AGG | + | chr8_3:56651469-56651488 | Msa1296880:intron | 60.0% |
| ! | GCACTAGTCTGTTGGGGGGA+AGG | + | chr8_3:56652317-56652336 | Msa1296880:intron | 60.0% |
| TGCGTATGCGGGATCTCACC+GGG | - | chr8_3:56652550-56652569 | None:intergenic | 60.0% | |
| CTGCGTATGCGGGATCTCAC+CGG | - | chr8_3:56652551-56652570 | None:intergenic | 60.0% | |
| GGTGAGATCCCGCATACGCA+GGG | + | chr8_3:56652550-56652569 | Msa1296880:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | chr8_3:56652577-56652596 | None:intergenic | 60.0% |
| AGGGGTAACCTTGGCGCAAC+TGG | - | chr8_3:56652692-56652711 | None:intergenic | 60.0% | |
| ! | ACGGTTGGCTCATGGGCCTT+TGG | + | chr8_3:56652769-56652788 | Msa1296880:intron | 60.0% |
| CTGAGGTAGGGAATGTGGGG+AGG | + | chr8_3:56652846-56652865 | Msa1296880:intron | 60.0% | |
| CGGTGAGATCCCGCATACGC+AGG | + | chr8_3:56652549-56652568 | Msa1296880:intron | 65.0% | |
| GATCCCGCATACGCAGGGTC+CGG | + | chr8_3:56652555-56652574 | Msa1296880:intron | 65.0% | |
| ATCCCGCATACGCAGGGTCC+GGG | + | chr8_3:56652556-56652575 | Msa1296880:intron | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | - | chr8_3:56652561-56652580 | None:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | - | chr8_3:56652562-56652581 | None:intergenic | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | + | chr8_3:56652561-56652580 | Msa1296880:intron | 65.0% | |
| CATACGCAGGGTCCGGGAAG+GGG | + | chr8_3:56652562-56652581 | Msa1296880:intron | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr8_3:56652575-56652594 | Msa1296880:intron | 65.0% | |
| CGCATACGCAGGGTCCGGGA+AGG | + | chr8_3:56652560-56652579 | Msa1296880:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 56651348 | 56654453 | 56651348 | ID=Msa1296880;Name=Msa1296880 |
| chr8_3 | mRNA | 56651348 | 56654453 | 56651348 | ID=Msa1296880-mRNA-1;Parent=Msa1296880;Name=Msa1296880-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.66|0.5|0.75|1|1|4|236|212 |
| chr8_3 | exon | 56651348 | 56651416 | 56651348 | ID=Msa1296880-mRNA-1:exon:16233;Parent=Msa1296880-mRNA-1 |
| chr8_3 | exon | 56651966 | 56652049 | 56651966 | ID=Msa1296880-mRNA-1:exon:16234;Parent=Msa1296880-mRNA-1 |
| chr8_3 | exon | 56653285 | 56653428 | 56653285 | ID=Msa1296880-mRNA-1:exon:16235;Parent=Msa1296880-mRNA-1 |
| chr8_3 | exon | 56653876 | 56654453 | 56653876 | ID=Msa1296880-mRNA-1:exon:16236;Parent=Msa1296880-mRNA-1 |
| chr8_3 | CDS | 56651348 | 56651416 | 56651348 | ID=Msa1296880-mRNA-1:cds;Parent=Msa1296880-mRNA-1 |
| chr8_3 | CDS | 56651966 | 56652049 | 56651966 | ID=Msa1296880-mRNA-1:cds;Parent=Msa1296880-mRNA-1 |
| chr8_3 | CDS | 56653285 | 56653428 | 56653285 | ID=Msa1296880-mRNA-1:cds;Parent=Msa1296880-mRNA-1 |
| chr8_3 | CDS | 56653876 | 56654217 | 56653876 | ID=Msa1296880-mRNA-1:cds;Parent=Msa1296880-mRNA-1 |
| chr8_3 | three_prime_UTR | 56654218 | 56654453 | 56654218 | ID=Msa1296880-mRNA-1:three_prime_utr;Parent=Msa1296880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
