AlfalfaGEDB | Msa1357530

M. sativa cultivar zhongmu-4 / Msa1357530

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1357530	GAU36345.1	86.922	497	48	3	5	487	1	494	0.0	860

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1357530	sp\|C0LGT1\|Y5129_ARATH	64.975	394	127	5	4	393	8	394	1.72e-162	476
Msa1357530	sp\|C0LGT1\|Y5129_ARATH	74.790	119	25	2	373	487	496	613	2.83e-48	178

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1357530	A0A2Z6NK77	86.922	497	48	3	5	487	1	494	0.0	860

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa1357530	-0.819611	1.060786e-52	-8.615850e-47
Msa0001780	Msa1357530	0.807583	4.709602e-50	-8.615850e-47
Msa0004920	Msa1357530	0.803964	2.710996e-49	-8.615850e-47
Msa0007080	Msa1357530	0.816092	6.608256e-52	-8.615850e-47
Msa0011170	Msa1357530	0.845205	4.696571e-59	-8.615850e-47
Msa0013050	Msa1357530	-0.821554	3.796328e-53	-8.615850e-47
Msa0014710	Msa1357530	0.821908	3.143991e-53	-8.615850e-47
Msa0017510	Msa1357530	0.838683	2.485216e-57	-8.615850e-47
Msa0020930	Msa1357530	0.856078	4.101966e-62	-8.615850e-47
Msa0031340	Msa1357530	0.811581	6.516032e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1357530	MtrunA17_Chr3g0123891	93.639	393	22	1	1	393	1	390	0.0	728
Msa1357530	MtrunA17_Chr3g0123891	99.038	104	1	0	384	487	506	609	9.00e-64	217
Msa1357530	MtrunA17_Chr8g0382101	72.823	379	92	5	20	393	15	387	0.0	540
Msa1357530	MtrunA17_Chr8g0382101	76.471	119	23	2	373	487	489	606	2.62e-52	186
Msa1357530	MtrunA17_Chr8g0385051	46.429	392	177	6	7	393	14	377	8.63e-105	325
Msa1357530	MtrunA17_Chr8g0385051	50.820	122	50	4	373	487	479	597	9.10e-27	114
Msa1357530	MtrunA17_Chr7g0220741	44.507	355	187	3	32	376	39	393	3.24e-90	288
Msa1357530	MtrunA17_Chr7g0220741	50.943	106	50	1	384	487	521	626	4.03e-23	102
Msa1357530	MtrunA17_Chr1g0200911	44.384	365	188	2	27	377	29	392	6.34e-89	284
Msa1357530	MtrunA17_Chr1g0200911	53.846	104	48	0	384	487	524	627	3.45e-26	112

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1357530	AT5G10290.1	64.975	394	127	5	4	393	8	394	1.75e-163	476
Msa1357530	AT5G10290.1	74.790	119	25	2	373	487	496	613	2.88e-49	178
Msa1357530	AT5G10290.2	64.975	394	127	5	4	393	8	394	1.75e-163	476
Msa1357530	AT5G10290.2	74.790	119	25	2	373	487	496	613	2.88e-49	178
Msa1357530	AT5G65240.1	60.406	394	145	5	5	393	1	388	2.99e-152	447
Msa1357530	AT5G65240.1	71.429	119	29	2	373	487	490	607	8.10e-47	172
Msa1357530	AT5G65240.2	62.005	379	133	5	5	378	1	373	7.30e-152	447
Msa1357530	AT5G65240.2	70.175	114	29	2	373	482	490	602	3.62e-43	162
Msa1357530	AT5G63710.2	48.056	360	151	8	25	378	14	343	2.56e-99	310
Msa1357530	AT5G63710.2	53.271	107	46	3	384	487	474	579	3.08e-23	103

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Find 117 sgRNAs with CRISPR-Local

Find 534 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCAATGAGCCGTAAA+AGG	0.380056	tig0016095:+54414	Msa1357530:intergenic
AAACATTGGACCAAGTACAA+GGG	0.676769	tig0016095:+59216	Msa1357530:intergenic
AAATCTTCTTTGCAGTCTCT+CGG	0.487401	tig0016095:+52755	Msa1357530:intergenic
AACTGATTATGAAAGTCCTG+GGG	0.615730	tig0016095:-54492	Msa1357530:CDS
AACTTGTTTAATTTATTCCG+AGG	0.554830	tig0016095:-52612	Msa1357530:three_prime_UTR
AAGCTTAGTGAGATTGGATC+TGG	0.418145	tig0016095:-58416	Msa1357530:CDS
AAGGGAAGATGGTATTTCAC+CGG	0.585033	tig0016095:+58378	Msa1357530:intergenic
AATAAATTAAACAAGTTGAA+AGG	0.479474	tig0016095:+52618	Msa1357530:intergenic
ACACTTAAGTTCTGCATGAA+AGG	0.514584	tig0016095:+54359	Msa1357530:intergenic
ACATACATATTGATCAAGTT+TGG	0.306255	tig0016095:+58168	Msa1357530:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CCTTATAGAGATGAAATTGA+AGG	+	tig0016095:52649-52668	Msa1357530:intergenic	30.0%
CCTTCAATTTCATCTCTATA+AGG	-	tig0016095:52646-52665	Msa1357530:three_prime_UTR	30.0%
ATTTCATCTCTATAAGGTTC+TGG	-	tig0016095:52652-52671	Msa1357530:three_prime_UTR	30.0%
CAAATCTTCAAGCATCAATA+AGG	+	tig0016095:53294-53313	Msa1357530:intergenic	30.0%
TTATATAATTATACAGCCGC+GGG	+	tig0016095:53319-53338	Msa1357530:intergenic	30.0%
TGTGATTTGATGAAACCATA+TGG	-	tig0016095:53504-53523	Msa1357530:intron	30.0%
TCAAAAACCAACACAAAAGA+TGG	+	tig0016095:53755-53774	Msa1357530:intergenic	30.0%
TTTATCATGCAGTTCTTTAC+AGG	-	tig0016095:53887-53906	Msa1357530:intron	30.0%
TTATCATGCAGTTCTTTACA+GGG	-	tig0016095:53888-53907	Msa1357530:intron	30.0%
CTGGAAAACAACAAATTAAC+CGG	-	tig0016095:53975-53994	Msa1357530:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0016095	gene	52390	60004	52390	ID=Msa1357530;Name=Msa1357530
tig0016095	mRNA	52390	60004	52390	ID=Msa1357530-mRNA-1;Parent=Msa1357530;Name=Msa1357530-mRNA-1;_AED=0.20;_eAED=0.20;_QI=135\|0.7\|0.81\|0.90\|1\|1\|11\|305\|487
tig0016095	exon	52390	53009	52390	ID=Msa1357530-mRNA-1:exon:10421;Parent=Msa1357530-mRNA-1
tig0016095	exon	53155	53174	53155	ID=Msa1357530-mRNA-1:exon:10420;Parent=Msa1357530-mRNA-1
tig0016095	exon	54342	54683	54342	ID=Msa1357530-mRNA-1:exon:10419;Parent=Msa1357530-mRNA-1
tig0016095	exon	56768	56899	56768	ID=Msa1357530-mRNA-1:exon:10418;Parent=Msa1357530-mRNA-1
tig0016095	exon	56974	57044	56974	ID=Msa1357530-mRNA-1:exon:10417;Parent=Msa1357530-mRNA-1
tig0016095	exon	57999	58073	57999	ID=Msa1357530-mRNA-1:exon:10416;Parent=Msa1357530-mRNA-1
tig0016095	exon	58174	58245	58174	ID=Msa1357530-mRNA-1:exon:10415;Parent=Msa1357530-mRNA-1
tig0016095	exon	58352	58495	58352	ID=Msa1357530-mRNA-1:exon:10414;Parent=Msa1357530-mRNA-1
tig0016095	exon	58969	59040	58969	ID=Msa1357530-mRNA-1:exon:10413;Parent=Msa1357530-mRNA-1
tig0016095	exon	59185	59317	59185	ID=Msa1357530-mRNA-1:exon:10412;Parent=Msa1357530-mRNA-1
tig0016095	exon	59782	60004	59782	ID=Msa1357530-mRNA-1:exon:10411;Parent=Msa1357530-mRNA-1
tig0016095	five_prime_UTR	59870	60004	59870	ID=Msa1357530-mRNA-1:five_prime_utr;Parent=Msa1357530-mRNA-1
tig0016095	CDS	59782	59869	59782	ID=Msa1357530-mRNA-1:cds;Parent=Msa1357530-mRNA-1
tig0016095	CDS	59185	59317	59185	ID=Msa1357530-mRNA-1:cds;Parent=Msa1357530-mRNA-1
tig0016095	CDS	58969	59040	58969	ID=Msa1357530-mRNA-1:cds;Parent=Msa1357530-mRNA-1
tig0016095	CDS	58352	58495	58352	ID=Msa1357530-mRNA-1:cds;Parent=Msa1357530-mRNA-1
tig0016095	CDS	58174	58245	58174	ID=Msa1357530-mRNA-1:cds;Parent=Msa1357530-mRNA-1
tig0016095	CDS	57999	58073	57999	ID=Msa1357530-mRNA-1:cds;Parent=Msa1357530-mRNA-1
tig0016095	CDS	56974	57044	56974	ID=Msa1357530-mRNA-1:cds;Parent=Msa1357530-mRNA-1
tig0016095	CDS	56768	56899	56768	ID=Msa1357530-mRNA-1:cds;Parent=Msa1357530-mRNA-1
tig0016095	CDS	54342	54683	54342	ID=Msa1357530-mRNA-1:cds;Parent=Msa1357530-mRNA-1
tig0016095	CDS	53155	53174	53155	ID=Msa1357530-mRNA-1:cds;Parent=Msa1357530-mRNA-1
tig0016095	CDS	52695	53009	52695	ID=Msa1357530-mRNA-1:cds;Parent=Msa1357530-mRNA-1
tig0016095	three_prime_UTR	52390	52694	52390	ID=Msa1357530-mRNA-1:three_prime_utr;Parent=Msa1357530-mRNA-1

Gene Sequence

>Msa1357530

ATGTTTGTGGAAATGAACTTGGTGTTTCTTCTATTGTTACTTTTGGTTTGTGTGTGTTCTTTTGCACTTCCTCAGCTTGATTTACAAGAAGATGCACTATATGCATTGAAGTTATCTCTGAATGCTTCACCCAACCAGCTTACTAACTGGAACAAAAATCAAGTAAACCCTTGTACTTGGTCCAATGTTTACTGCGACCAGAACAGCAATGTTGTTCAAGTCTCACTAGCATTTATGGGATTCACTGGATCCTTGACACCTAGAATAGGAGCTCTAAAAAGTCTTACAACTCTTTCTTTACAGGGGAATAACATCATTGGTGGCATACCAAAAGAATTTGGAAATCTTACAAGCTTAGTGAGATTGGATCTGGAAAACAACAAATTAACCGGTGAAATACCATCTTCCCTTGGTAATCTTAAAAAGCTTCAATTCTTGACATTAAGTCAAAACAATCTTAACGGGACAATTCCAGAATCACTTGGCAGTCTCCCAAACTTGATCAATATTTTGATAGATTCAAATGAACTTAACGGACAGATTCCAGAGCAGTTATTCAACGTTCCTAAGTACAAGTACGTATGTTTCACTGGAAATAAATTGAATTGTGGTGTGAGTTATCAGCATCTTTGCACATCTGATAATGCAAATCAAGGTTCATCACACAAACCAAAAGTAGGCCTCATAGTTGGAACAGTTGTAGGTTCAATTCTTATTCTTTTTCTTGGTAGCCTGCTGTTTTTCTGGTGCAAAGGGCACAGGCGTGAGGTTTTTGTAGATGTTGCAGGTGAAGTTGATCGGCGAATTACACTTGGTCAAATAAAAAGTTTTTCCTGGAGAGAACTACAGATAGCGACAGACAGCTTCAGCGAGAAGAATGTTTTAGGACAGGGAGGCTTTGGTAAGGTTTATAAAGGTGTTTTAGTTGATGGGACAAAAATTGCTGTCAAAAGACTAACTGATTATGAAAGTCCTGGGGGTGATCAAGCTTTCCAGCGCGAAGTTGAAATGATAAGCGTAGCTGTCCATAGGAACCTTTTACGGCTCATTGGGTTTTGCACTACTCCAACCGAACGCCTCTTAGTATATCCTTTCATGCAGAACTTAAGTGTTGCCTCTCGACTAAGAGAACTCGTTGATGAGCATAAGGTGAAGAAGCTACAAAGGGAGAAAAGATTGGATGCCATTGTTGACAGCAACCTTAATAAAAACTACAACATAGAAGAAGTTGAAATGATAGTACAAGTTGCATTACTGTGCACGCAAGCAACACCAGAGGATCGTCCGGCAATGTCAGAGGTTGTAAGAATGTTGGAGGGAGAAGGGCTGTCCGAAAGGTGGGAAGAATGGCAGCACGTGGAGGTTACTCGGAGACAAGACTCCGAGAGACTGCAAAGAAGATTTGCGTGGGGAGATGATTCAATTCATAACCAAGATGCGATCGAGTTGTCTGGTGGACGATGA

Protein sequence

>Msa1357530

MFVEMNLVFLLLLLLVCVCSFALPQLDLQEDALYALKLSLNASPNQLTNWNKNQVNPCTWSNVYCDQNSNVVQVSLAFMGFTGSLTPRIGALKSLTTLSLQGNNIIGGIPKEFGNLTSLVRLDLENNKLTGEIPSSLGNLKKLQFLTLSQNNLNGTIPESLGSLPNLINILIDSNELNGQIPEQLFNVPKYKYVCFTGNKLNCGVSYQHLCTSDNANQGSSHKPKVGLIVGTVVGSILILFLGSLLFFWCKGHRREVFVDVAGEVDRRITLGQIKSFSWRELQIATDSFSEKNVLGQGGFGKVYKGVLVDGTKIAVKRLTDYESPGGDQAFQREVEMISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVASRLRELVDEHKVKKLQREKRLDAIVDSNLNKNYNIEEVEMIVQVALLCTQATPEDRPAMSEVVRMLEGEGLSERWEEWQHVEVTRRQDSERLQRRFAWGDDSIHNQDAIELSGGR*