Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170480 | XP_013468760.1 | 99.612 | 516 | 2 | 0 | 1 | 516 | 1 | 516 | 0.0 | 1075 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170480 | sp|Q5XEP9|KCS2_ARATH | 75.479 | 522 | 115 | 6 | 3 | 516 | 9 | 525 | 0.0 | 825 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170480 | A0A072VLT9 | 99.612 | 516 | 2 | 0 | 1 | 516 | 1 | 516 | 0.0 | 1075 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030340 | Msa0170480 | 0.995486 | 9.446958e-217 | -8.615850e-47 |
| Msa0077940 | Msa0170480 | 0.923012 | 4.650132e-89 | -8.615850e-47 |
| Msa0125850 | Msa0170480 | 0.964814 | 8.391464e-124 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170480 | MtrunA17_Chr1g0188051 | 99.612 | 516 | 2 | 0 | 1 | 516 | 1 | 516 | 0.0 | 1075 |
| Msa0170480 | MtrunA17_Chr1g0166191 | 84.291 | 522 | 70 | 3 | 1 | 514 | 4 | 521 | 0.0 | 928 |
| Msa0170480 | MtrunA17_Chr4g0063011 | 75.960 | 495 | 119 | 0 | 18 | 512 | 6 | 500 | 0.0 | 808 |
| Msa0170480 | MtrunA17_Chr4g0035081 | 66.258 | 489 | 164 | 1 | 18 | 506 | 15 | 502 | 0.0 | 694 |
| Msa0170480 | MtrunA17_Chr7g0276251 | 65.600 | 500 | 163 | 5 | 17 | 507 | 30 | 529 | 0.0 | 677 |
| Msa0170480 | MtrunA17_Chr2g0306781 | 83.467 | 375 | 62 | 0 | 138 | 512 | 31 | 405 | 0.0 | 659 |
| Msa0170480 | MtrunA17_Chr1g0209881 | 61.258 | 493 | 190 | 1 | 20 | 512 | 5 | 496 | 0.0 | 632 |
| Msa0170480 | MtrunA17_Chr5g0423521 | 58.824 | 493 | 202 | 1 | 20 | 512 | 5 | 496 | 0.0 | 610 |
| Msa0170480 | MtrunA17_Chr6g0480561 | 64.203 | 433 | 154 | 1 | 77 | 508 | 38 | 470 | 0.0 | 592 |
| Msa0170480 | MtrunA17_Chr3g0136561 | 58.315 | 463 | 182 | 3 | 52 | 503 | 438 | 900 | 0.0 | 584 |
| Msa0170480 | MtrunA17_Chr7g0250661 | 84.407 | 295 | 46 | 0 | 218 | 512 | 1 | 295 | 0.0 | 542 |
| Msa0170480 | MtrunA17_Chr2g0282281 | 51.822 | 494 | 227 | 5 | 6 | 498 | 20 | 503 | 2.95e-173 | 498 |
| Msa0170480 | MtrunA17_Chr2g0277841 | 51.707 | 410 | 195 | 3 | 99 | 507 | 45 | 452 | 2.81e-152 | 442 |
| Msa0170480 | MtrunA17_Chr2g0295781 | 50.235 | 426 | 201 | 5 | 87 | 506 | 31 | 451 | 4.52e-152 | 442 |
| Msa0170480 | MtrunA17_Chr7g0276241 | 66.552 | 290 | 90 | 2 | 218 | 505 | 1 | 285 | 7.73e-146 | 420 |
| Msa0170480 | MtrunA17_Chr1g0204301 | 44.608 | 408 | 225 | 1 | 98 | 504 | 77 | 484 | 3.40e-129 | 385 |
| Msa0170480 | MtrunA17_Chr6g0461631 | 66.275 | 255 | 86 | 0 | 253 | 507 | 3 | 257 | 4.55e-126 | 369 |
| Msa0170480 | MtrunA17_Chr3g0115021 | 44.444 | 414 | 222 | 3 | 95 | 504 | 74 | 483 | 1.33e-122 | 368 |
| Msa0170480 | MtrunA17_Chr3g0115041 | 44.444 | 414 | 222 | 3 | 95 | 504 | 74 | 483 | 1.33e-122 | 368 |
| Msa0170480 | MtrunA17_Chr6g0469631 | 44.335 | 406 | 218 | 3 | 103 | 504 | 81 | 482 | 4.82e-116 | 351 |
| Msa0170480 | MtrunA17_Chr4g0026871 | 70.485 | 227 | 66 | 1 | 281 | 506 | 1 | 227 | 1.31e-114 | 338 |
| Msa0170480 | MtrunA17_Chr4g0030591 | 40.995 | 422 | 226 | 4 | 99 | 503 | 27 | 442 | 5.05e-110 | 335 |
| Msa0170480 | MtrunA17_Chr4g0030601 | 41.232 | 422 | 239 | 4 | 88 | 503 | 15 | 433 | 6.37e-110 | 335 |
| Msa0170480 | MtrunA17_Chr2g0327721 | 41.096 | 438 | 232 | 8 | 88 | 505 | 15 | 446 | 2.31e-108 | 331 |
| Msa0170480 | MtrunA17_Chr4g0030581 | 41.204 | 432 | 233 | 6 | 88 | 503 | 15 | 441 | 2.09e-107 | 328 |
| Msa0170480 | MtrunA17_Chr1g0212951 | 38.391 | 435 | 243 | 4 | 91 | 503 | 20 | 451 | 3.45e-107 | 328 |
| Msa0170480 | MtrunA17_Chr4g0026791 | 64.804 | 179 | 62 | 1 | 281 | 458 | 1 | 179 | 6.77e-79 | 244 |
| Msa0170480 | MtrunA17_Chr4g0026721 | 68.553 | 159 | 50 | 0 | 348 | 506 | 1 | 159 | 5.70e-76 | 236 |
| Msa0170480 | MtrunA17_Chr7g0250651 | 60.106 | 188 | 74 | 1 | 7 | 193 | 6 | 193 | 1.67e-74 | 234 |
| Msa0170480 | MtrunA17_Chr6g0461621 | 49.785 | 233 | 111 | 3 | 34 | 265 | 2 | 229 | 1.09e-67 | 217 |
| Msa0170480 | MtrunA17_Chr4g0026861 | 55.556 | 180 | 80 | 0 | 77 | 256 | 36 | 215 | 1.95e-67 | 216 |
| Msa0170480 | MtrunA17_Chr4g0026801 | 49.593 | 123 | 62 | 0 | 77 | 199 | 36 | 158 | 4.90e-36 | 131 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170480 | AT1G04220.1 | 75.479 | 522 | 115 | 6 | 3 | 516 | 9 | 525 | 0.0 | 825 |
| Msa0170480 | AT2G26640.1 | 76.768 | 495 | 115 | 0 | 18 | 512 | 15 | 509 | 0.0 | 822 |
| Msa0170480 | AT5G43760.1 | 77.016 | 496 | 108 | 3 | 26 | 515 | 34 | 529 | 0.0 | 776 |
| Msa0170480 | AT1G19440.1 | 66.531 | 490 | 163 | 1 | 15 | 504 | 24 | 512 | 0.0 | 692 |
| Msa0170480 | AT2G16280.1 | 64.898 | 490 | 171 | 1 | 15 | 504 | 20 | 508 | 0.0 | 684 |
| Msa0170480 | AT1G01120.1 | 62.903 | 496 | 178 | 3 | 17 | 506 | 31 | 526 | 0.0 | 678 |
| Msa0170480 | AT4G34510.1 | 63.103 | 477 | 169 | 4 | 31 | 506 | 15 | 485 | 0.0 | 637 |
| Msa0170480 | AT1G68530.1 | 59.838 | 493 | 197 | 1 | 20 | 512 | 6 | 497 | 0.0 | 630 |
| Msa0170480 | AT1G25450.1 | 59.229 | 493 | 200 | 1 | 20 | 512 | 1 | 492 | 0.0 | 618 |
| Msa0170480 | AT2G26250.1 | 56.923 | 520 | 193 | 5 | 13 | 504 | 32 | 548 | 0.0 | 602 |
| Msa0170480 | AT4G34250.1 | 57.025 | 484 | 201 | 3 | 29 | 506 | 5 | 487 | 0.0 | 559 |
| Msa0170480 | AT2G15090.1 | 57.447 | 470 | 190 | 4 | 46 | 506 | 11 | 479 | 0.0 | 550 |
| Msa0170480 | AT4G34520.1 | 56.379 | 486 | 200 | 4 | 32 | 506 | 6 | 490 | 0.0 | 547 |
| Msa0170480 | AT2G46720.1 | 56.757 | 444 | 187 | 3 | 66 | 506 | 24 | 465 | 0.0 | 547 |
| Msa0170480 | AT3G10280.1 | 56.941 | 425 | 168 | 4 | 89 | 506 | 42 | 458 | 0.0 | 525 |
| Msa0170480 | AT1G71160.1 | 48.578 | 422 | 211 | 4 | 84 | 504 | 30 | 446 | 7.75e-150 | 437 |
| Msa0170480 | AT5G49070.1 | 47.196 | 428 | 222 | 3 | 87 | 512 | 36 | 461 | 2.91e-141 | 415 |
| Msa0170480 | AT1G68530.2 | 56.522 | 345 | 148 | 2 | 20 | 363 | 6 | 349 | 1.39e-139 | 407 |
| Msa0170480 | AT3G52160.1 | 43.061 | 490 | 229 | 6 | 6 | 495 | 10 | 449 | 7.02e-139 | 409 |
| Msa0170480 | AT3G52160.2 | 49.041 | 365 | 155 | 2 | 131 | 495 | 3 | 336 | 6.91e-128 | 376 |
| Msa0170480 | AT2G28630.2 | 41.647 | 425 | 219 | 7 | 101 | 503 | 29 | 446 | 1.66e-111 | 339 |
| Msa0170480 | AT2G28630.1 | 41.647 | 425 | 219 | 7 | 101 | 503 | 29 | 446 | 1.66e-111 | 339 |
| Msa0170480 | AT1G07720.1 | 41.026 | 429 | 221 | 6 | 99 | 503 | 27 | 447 | 3.20e-108 | 331 |
| Msa0170480 | AT1G07720.2 | 41.026 | 429 | 221 | 6 | 99 | 503 | 70 | 490 | 4.36e-108 | 332 |
| Msa0170480 | AT5G04530.1 | 38.915 | 424 | 247 | 5 | 89 | 503 | 17 | 437 | 1.54e-106 | 326 |
| Msa0170480 | AT5G49070.2 | 42.294 | 279 | 160 | 1 | 87 | 365 | 36 | 313 | 5.74e-77 | 245 |
Find 112 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCACACTCAACTGGTATTT+TGG | 0.148092 | 1_4:+54557447 | Msa0170480:CDS |
| GGCTAAGGATATTGGGATTT+TGG | 0.160476 | 1_4:+54556652 | Msa0170480:CDS |
| GTTAGGAAGAAATTTGTTTA+AGG | 0.174752 | 1_4:+54558189 | Msa0170480:exon |
| TTCACTGATAGAAGAAAATT+TGG | 0.183181 | 1_4:-54556128 | None:intergenic |
| ATTTCTTCTCATCTTCTTCT+TGG | 0.218715 | 1_4:-54557632 | None:intergenic |
| TAACTCTTGGAAAATTTATA+AGG | 0.234565 | 1_4:-54556024 | None:intergenic |
| TCCACATTTAATTAATCTTT+AGG | 0.260306 | 1_4:+54558224 | Msa0170480:three_prime_UTR |
| TGCTGGTGGAAGAGCTGTTT+TGG | 0.263824 | 1_4:+54557860 | Msa0170480:CDS |
| CTATTCAGTGTCATTCTTGA+TGG | 0.275990 | 1_4:-54557927 | None:intergenic |
| GTACATGTGTACTCTTGTTT+TGG | 0.276425 | 1_4:-54556404 | None:intergenic |
| GGAAGATGGCATTGTTATAA+AGG | 0.290049 | 1_4:-54555827 | None:intergenic |
| TTTGCTGTCAGAAGCTTTGT+TGG | 0.296454 | 1_4:-54557535 | None:intergenic |
| GTGAATCATTATAAGTTAAG+AGG | 0.297927 | 1_4:+54556725 | Msa0170480:CDS |
| TGGCAAATTGCATTTGGTTC+TGG | 0.298723 | 1_4:+54558035 | Msa0170480:CDS |
| ATCAAATTGTTTGTTTAGAA+TGG | 0.305639 | 1_4:+54557491 | Msa0170480:CDS |
| ATCACTCTCAAAAGATTTAA+TGG | 0.313780 | 1_4:+54557665 | Msa0170480:CDS |
| TGGTGCTATTGATGAGCTTT+TGG | 0.331199 | 1_4:+54556613 | Msa0170480:CDS |
| ACACTTCTAGTAGTTCATTA+TGG | 0.333772 | 1_4:+54557958 | Msa0170480:CDS |
| GTATAACATATGATATGTTT+TGG | 0.336428 | 1_4:-54555907 | None:intergenic |
| ATGAATAGGTCTGAATTAAC+AGG | 0.348386 | 1_4:+54556440 | Msa0170480:CDS |
| TCCAAACTCTTATGCCTTAG+TGG | 0.348892 | 1_4:+54557410 | Msa0170480:CDS |
| GAACCAATGGTTGCCACTTT+AGG | 0.351358 | 1_4:-54558161 | None:intergenic |
| GCTTCAGCCATACAAGGATT+TGG | 0.353700 | 1_4:-54556563 | None:intergenic |
| GTGTTAAGGCTAAGGATATT+GGG | 0.356405 | 1_4:+54556645 | Msa0170480:CDS |
| AAAATTTATAAGGACTTGTT+TGG | 0.362540 | 1_4:-54556014 | None:intergenic |
| GGTGTTAAGGCTAAGGATAT+TGG | 0.367782 | 1_4:+54556644 | Msa0170480:CDS |
| ATACTTGAGAGGTCTGGTTT+AGG | 0.382514 | 1_4:+54556500 | Msa0170480:CDS |
| AAGTTATAATCTTGGTGGTA+TGG | 0.383403 | 1_4:+54556757 | Msa0170480:CDS |
| ACCACTAAGGCATAAGAGTT+TGG | 0.387819 | 1_4:-54557411 | None:intergenic |
| AGGACTTGGCAAATTGCATT+TGG | 0.392984 | 1_4:+54558029 | Msa0170480:CDS |
| AGAATGACACTGAATAGATT+TGG | 0.394432 | 1_4:+54557933 | Msa0170480:CDS |
| GAAGATGAGAAGAAATCAAT+TGG | 0.399460 | 1_4:+54557639 | Msa0170480:CDS |
| GTGATTCAAAAGAAACTGAT+TGG | 0.399645 | 1_4:-54556085 | None:intergenic |
| GGTGGAACACTCAATATTGC+TGG | 0.400152 | 1_4:-54556542 | None:intergenic |
| AATGTTCAAAGTTATAATCT+TGG | 0.402519 | 1_4:+54556749 | Msa0170480:CDS |
| TCATGTAACAAATGTTCAAC+TGG | 0.405616 | 1_4:-54558353 | None:intergenic |
| TAGTTCATTATGGTATGAAT+TGG | 0.409549 | 1_4:+54557968 | Msa0170480:CDS |
| TCAAATTGTTTGTTTAGAAT+GGG | 0.411142 | 1_4:+54557492 | Msa0170480:CDS |
| GCCACTTTAGGCACATGAAC+AGG | 0.414943 | 1_4:-54558149 | None:intergenic |
| CACACCGTCCGAACACATAA+AGG | 0.416666 | 1_4:+54557579 | Msa0170480:CDS |
| AAATTGAAGTAATTAACTCT+TGG | 0.422322 | 1_4:-54556037 | None:intergenic |
| TGATCTTAGTGATTGGCATA+TGG | 0.423434 | 1_4:+54557902 | Msa0170480:CDS |
| GGTGGTATGGGTTGTAGTGC+TGG | 0.424592 | 1_4:+54556770 | Msa0170480:CDS |
| TCAAAAGCTAATTTAAAATC+AGG | 0.424969 | 1_4:-54557822 | None:intergenic |
| TAATTTAAAATCAGGAATGT+AGG | 0.428965 | 1_4:-54557814 | None:intergenic |
| AAAATCTTGATCTTAGTGAT+TGG | 0.430588 | 1_4:+54557895 | Msa0170480:CDS |
| CATATAGTTGAACAATATCA+TGG | 0.436793 | 1_4:-54556259 | None:intergenic |
| AACCATTGGTTCATCAAGTT+AGG | 0.443186 | 1_4:+54558172 | Msa0170480:CDS |
| TTTGGAGAAAACTGGTGTTA+AGG | 0.445941 | 1_4:+54556631 | Msa0170480:CDS |
| AACACTATGTACTAGTCTAA+TGG | 0.446509 | 1_4:+54556310 | Msa0170480:CDS |
| GAAGCTGAGGAAGTTATGTT+TGG | 0.456300 | 1_4:+54556593 | Msa0170480:CDS |
| TACTTCAATTTCAATACTCA+TGG | 0.459172 | 1_4:+54556049 | Msa0170480:exon |
| TTCCTTGCTTCAGCCATACA+AGG | 0.461441 | 1_4:-54556569 | None:intergenic |
| GGAGGATTAGAAAAGGTGAT+AGG | 0.461538 | 1_4:+54558009 | Msa0170480:CDS |
| AGTTATAATCTTGGTGGTAT+GGG | 0.463605 | 1_4:+54556758 | Msa0170480:CDS |
| AAGAAAATACTTGAGAGGTC+TGG | 0.464675 | 1_4:+54556494 | Msa0170480:CDS |
| CGTCCGCGCCTTTATGTGTT+CGG | 0.465432 | 1_4:-54557587 | None:intergenic |
| TCAACCAAGTAAACACCTCT+TGG | 0.467981 | 1_4:-54556365 | None:intergenic |
| CCTTGCTAAGCAGCTCCTAC+AGG | 0.473334 | 1_4:+54556808 | Msa0170480:CDS |
| TCCTGTTCATGTGCCTAAAG+TGG | 0.481276 | 1_4:+54558148 | Msa0170480:CDS |
| TGGAGAACATCACACTCAAC+TGG | 0.498098 | 1_4:+54557439 | Msa0170480:CDS |
| GTGGAACACTCAATATTGCT+GGG | 0.499640 | 1_4:-54556541 | None:intergenic |
| AATTTAAAATCAGGAATGTA+GGG | 0.500091 | 1_4:-54557813 | None:intergenic |
| TCTGACATAGGTAGGACTAA+TGG | 0.501024 | 1_4:-54557732 | None:intergenic |
| TTCCTAACTTGATGAACCAA+TGG | 0.503576 | 1_4:-54558174 | None:intergenic |
| TCGTCCAAGAGGTGTTTACT+TGG | 0.505159 | 1_4:+54556361 | Msa0170480:CDS |
| TGAATCATTATAAGTTAAGA+GGG | 0.506304 | 1_4:+54556726 | Msa0170480:CDS |
| TCCTAAAGATTAATTAAATG+TGG | 0.506314 | 1_4:-54558225 | None:intergenic |
| GTTCAAAGTTATAATCTTGG+TGG | 0.515718 | 1_4:+54556752 | Msa0170480:CDS |
| TGGCTTATACTGAAGCTAAA+GGG | 0.515795 | 1_4:+54557988 | Msa0170480:CDS |
| TTAGAAAAGGTGATAGGACT+TGG | 0.517295 | 1_4:+54558015 | Msa0170480:CDS |
| AAACTTAAATATGTGAAACT+TGG | 0.519226 | 1_4:+54556149 | Msa0170480:CDS |
| GAAAGTTGCTTGTCTAGTTG+AGG | 0.519493 | 1_4:+54558447 | Msa0170480:three_prime_UTR |
| CGCGCCTTTATGTGTTCGGA+CGG | 0.519941 | 1_4:-54557583 | None:intergenic |
| AAAGATTTAATGGCGGTCGC+CGG | 0.521478 | 1_4:+54557675 | Msa0170480:CDS |
| GAAAACTGGTGTTAAGGCTA+AGG | 0.522687 | 1_4:+54556637 | Msa0170480:CDS |
| TTGGCTTATACTGAAGCTAA+AGG | 0.523513 | 1_4:+54557987 | Msa0170480:CDS |
| TGTTCCACCAAATCCTTGTA+TGG | 0.528304 | 1_4:+54556556 | Msa0170480:CDS |
| GTTCTCCATGCTCACCACTA+AGG | 0.531929 | 1_4:-54557424 | None:intergenic |
| TGGACCAAGTGTTGTGATGT+TGG | 0.537554 | 1_4:-54557712 | None:intergenic |
| TTCAAAAGAAAATACTTGAG+AGG | 0.537603 | 1_4:+54556489 | Msa0170480:CDS |
| TGTCAGAAGCTTTGTTGGAG+AGG | 0.549538 | 1_4:-54557530 | None:intergenic |
| TTTCTCCTTAGCTGGATCAA+CGG | 0.549864 | 1_4:-54558096 | None:intergenic |
| GTGCCTAAAGTGGCAACCAT+TGG | 0.552723 | 1_4:+54558158 | Msa0170480:CDS |
| GCTAAAGGGAGGATTAGAAA+AGG | 0.553131 | 1_4:+54558002 | Msa0170480:CDS |
| AATTGTTTGTTTAGAATGGG+AGG | 0.568502 | 1_4:+54557495 | Msa0170480:CDS |
| TCAGCCATACAAGGATTTGG+TGG | 0.568816 | 1_4:-54556560 | None:intergenic |
| TCATGAATCTCATCCATCCA+TGG | 0.570459 | 1_4:-54558122 | None:intergenic |
| AAAACCAACATCACAACACT+TGG | 0.570838 | 1_4:+54557708 | Msa0170480:CDS |
| AACAGAAGCTGTTCTGACAT+AGG | 0.577420 | 1_4:-54557744 | None:intergenic |
| TTCGGACGGTGTGGATCAGT+TGG | 0.577447 | 1_4:-54557569 | None:intergenic |
| CAAGTGCTTAATTGTGCTAG+AGG | 0.580140 | 1_4:-54555933 | None:intergenic |
| GGCGCGGACGACAGATCATA+CGG | 0.585092 | 1_4:+54557600 | Msa0170480:CDS |
| GAAACAAAATCAAATGAGAG+TGG | 0.588416 | 1_4:-54555975 | None:intergenic |
| GAAGCTGTTCTGACATAGGT+AGG | 0.592086 | 1_4:-54557740 | None:intergenic |
| ATCCTTGTATGGCTGAAGCA+AGG | 0.595750 | 1_4:+54556567 | Msa0170480:CDS |
| GTGCTGTGTGGCGTGCATTG+AGG | 0.597254 | 1_4:+54558072 | Msa0170480:CDS |
| GAGGACCGTTGATCCAGCTA+AGG | 0.607671 | 1_4:+54558091 | Msa0170480:CDS |
| TTATGCCTTAGTGGTGAGCA+TGG | 0.609284 | 1_4:+54557419 | Msa0170480:CDS |
| ATAGCAGAAAGAGAAGGTGT+AGG | 0.612815 | 1_4:-54556698 | None:intergenic |
| CCTGTAGGAGCTGCTTAGCA+AGG | 0.618159 | 1_4:-54556808 | None:intergenic |
| TGAAGCAAGGAAAGAAGCTG+AGG | 0.624018 | 1_4:+54556580 | Msa0170480:CDS |
| AAGTGCTTAATTGTGCTAGA+GGG | 0.628631 | 1_4:-54555932 | None:intergenic |
| CTTTATGTGTTCGGACGGTG+TGG | 0.639949 | 1_4:-54557578 | None:intergenic |
| TGGAACACTCAATATTGCTG+GGG | 0.643916 | 1_4:-54556540 | None:intergenic |
| ACAATCATAGCAGAAAGAGA+AGG | 0.652463 | 1_4:-54556704 | None:intergenic |
| TACTTCATGAGTCGTCCAAG+AGG | 0.658967 | 1_4:+54556350 | Msa0170480:CDS |
| CTTATACTGAAGCTAAAGGG+AGG | 0.665669 | 1_4:+54557991 | Msa0170480:CDS |
| GGAACACTCAATATTGCTGG+GGG | 0.681776 | 1_4:-54556539 | None:intergenic |
| CGTCCGAACACATAAAGGCG+CGG | 0.707110 | 1_4:+54557584 | Msa0170480:CDS |
| ACTCTCAAAAGATTTAATGG+CGG | 0.725346 | 1_4:+54557668 | Msa0170480:CDS |
| TTAAATGTAACAGTGCTGTG+TGG | 0.778579 | 1_4:+54558060 | Msa0170480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATACTATTGTTTAATTTCA+TGG | + | chr1_4:54556853-54556872 | Msa0170480:intron | 15.0% |
| !! | TAATTTCAATGATTTATTCA+TGG | - | chr1_4:54557282-54557301 | None:intergenic | 15.0% |
| !!! | AACATTTTTGTTATATGTAT+AGG | + | chr1_4:54557383-54557402 | Msa0170480:intron | 15.0% |
| !! | TTGAATGTGATGAAAAAATA+TGG | - | chr1_4:54555851-54555870 | None:intergenic | 20.0% |
| !!! | GTATAACATATGATATGTTT+TGG | - | chr1_4:54555910-54555929 | None:intergenic | 20.0% |
| !!! | AAAATTTATAAGGACTTGTT+TGG | - | chr1_4:54556017-54556036 | None:intergenic | 20.0% |
| !! | TAACTCTTGGAAAATTTATA+AGG | - | chr1_4:54556027-54556046 | None:intergenic | 20.0% |
| !! | AAATTGAAGTAATTAACTCT+TGG | - | chr1_4:54556040-54556059 | None:intergenic | 20.0% |
| !! | AAACTTAAATATGTGAAACT+TGG | + | chr1_4:54556149-54556168 | Msa0170480:CDS | 20.0% |
| !!! | TACATTTTCTGATGAAAATT+TGG | + | chr1_4:54556463-54556482 | Msa0170480:CDS | 20.0% |
| !! | TGAATCATTATAAGTTAAGA+GGG | + | chr1_4:54556726-54556745 | Msa0170480:CDS | 20.0% |
| !! | AATGTTCAAAGTTATAATCT+TGG | + | chr1_4:54556749-54556768 | Msa0170480:CDS | 20.0% |
| !!! | TCAAGTTAGAACAAAATTTT+AGG | + | chr1_4:54556929-54556948 | Msa0170480:intron | 20.0% |
| !!! | CAAGTTAGAACAAAATTTTA+GGG | + | chr1_4:54556930-54556949 | Msa0170480:intron | 20.0% |
| !!! | AAGTTAGAACAAAATTTTAG+GGG | + | chr1_4:54556931-54556950 | Msa0170480:intron | 20.0% |
| !!! | TTCAAATTATAGCTTTAAGT+TGG | + | chr1_4:54556959-54556978 | Msa0170480:intron | 20.0% |
| !! | TAGTTGTAATTGTAAAGATT+TGG | - | chr1_4:54557254-54557273 | None:intergenic | 20.0% |
| !! | AATCTTTACAATTACAACTA+AGG | + | chr1_4:54557254-54557273 | Msa0170480:intron | 20.0% |
| !! | ATCTTTACAATTACAACTAA+GGG | + | chr1_4:54557255-54557274 | Msa0170480:intron | 20.0% |
| !!! | CTATAATAACATGGTATTTT+TGG | - | chr1_4:54557348-54557367 | None:intergenic | 20.0% |
| !!! | ATTGTTTTGCTATAATAACA+TGG | - | chr1_4:54557357-54557376 | None:intergenic | 20.0% |
| !! | ATCAAATTGTTTGTTTAGAA+TGG | + | chr1_4:54557491-54557510 | Msa0170480:CDS | 20.0% |
| !!! | TCAAATTGTTTGTTTAGAAT+GGG | + | chr1_4:54557492-54557511 | Msa0170480:CDS | 20.0% |
| !!! | AATTTAAAATCAGGAATGTA+GGG | - | chr1_4:54557816-54557835 | None:intergenic | 20.0% |
| !!! | TAATTTAAAATCAGGAATGT+AGG | - | chr1_4:54557817-54557836 | None:intergenic | 20.0% |
| !!! | TCAAAAGCTAATTTAAAATC+AGG | - | chr1_4:54557825-54557844 | None:intergenic | 20.0% |
| !! | TCCACATTTAATTAATCTTT+AGG | + | chr1_4:54558224-54558243 | Msa0170480:three_prime_UTR | 20.0% |
| !! | TCCTAAAGATTAATTAAATG+TGG | - | chr1_4:54558228-54558247 | None:intergenic | 20.0% |
| ! | TGATGAAAAAATATGGAAGA+TGG | - | chr1_4:54555844-54555863 | None:intergenic | 25.0% |
| !!! | CATTCAATTCCTTCTTTTTT+TGG | + | chr1_4:54555864-54555883 | Msa0170480:five_prime_UTR | 25.0% |
| ! | AAATGTAGACCAAAAAAAGA+AGG | - | chr1_4:54555876-54555895 | None:intergenic | 25.0% |
| ! | TACTTCAATTTCAATACTCA+TGG | + | chr1_4:54556049-54556068 | Msa0170480:exon | 25.0% |
| ! | TTCACTGATAGAAGAAAATT+TGG | - | chr1_4:54556131-54556150 | None:intergenic | 25.0% |
| !!! | TAGCTTTTGAGATTAAGTAA+TGG | - | chr1_4:54556178-54556197 | None:intergenic | 25.0% |
| ! | CATATAGTTGAACAATATCA+TGG | - | chr1_4:54556262-54556281 | None:intergenic | 25.0% |
| !! | CTAGAGAAATTTTCATGAAT+AGG | + | chr1_4:54556426-54556445 | Msa0170480:CDS | 25.0% |
| ! | TTCAAAAGAAAATACTTGAG+AGG | + | chr1_4:54556489-54556508 | Msa0170480:CDS | 25.0% |
| ! | GTGAATCATTATAAGTTAAG+AGG | + | chr1_4:54556725-54556744 | Msa0170480:CDS | 25.0% |
| !!! | GTTTAATTTCATGGTCATTT+TGG | + | chr1_4:54556862-54556881 | Msa0170480:intron | 25.0% |
| ! | ACCAAAAGTAAATTAAGTAC+TGG | + | chr1_4:54557070-54557089 | Msa0170480:intron | 25.0% |
| !! | ACCAGTACTTAATTTACTTT+TGG | - | chr1_4:54557074-54557093 | None:intergenic | 25.0% |
| !! | TTATTGACTATAGTTTGGTT+GGG | - | chr1_4:54557220-54557239 | None:intergenic | 25.0% |
| !! | ATTATTGACTATAGTTTGGT+TGG | - | chr1_4:54557221-54557240 | None:intergenic | 25.0% |
| !! | TGGTATTATTGACTATAGTT+TGG | - | chr1_4:54557225-54557244 | None:intergenic | 25.0% |
| ! | TTGTAAAGATTTGGACAATT+TGG | - | chr1_4:54557245-54557264 | None:intergenic | 25.0% |
| ! | ATCACTCTCAAAAGATTTAA+TGG | + | chr1_4:54557665-54557684 | Msa0170480:CDS | 25.0% |
| ! | AAAATCTTGATCTTAGTGAT+TGG | + | chr1_4:54557895-54557914 | Msa0170480:CDS | 25.0% |
| ! | TAGTTCATTATGGTATGAAT+TGG | + | chr1_4:54557968-54557987 | Msa0170480:CDS | 25.0% |
| !! | GTTAGGAAGAAATTTGTTTA+AGG | + | chr1_4:54558189-54558208 | Msa0170480:exon | 25.0% |
| !! | TCATAGTACACATTTTATGA+AGG | - | chr1_4:54558394-54558413 | None:intergenic | 25.0% |
| GAAACAAAATCAAATGAGAG+TGG | - | chr1_4:54555978-54555997 | None:intergenic | 30.0% | |
| GTGATTCAAAAGAAACTGAT+TGG | - | chr1_4:54556088-54556107 | None:intergenic | 30.0% | |
| CAAAAAGTGGTATGAGTAAA+AGG | - | chr1_4:54556205-54556224 | None:intergenic | 30.0% | |
| !! | CTTTTACTCATACCACTTTT+TGG | + | chr1_4:54556203-54556222 | Msa0170480:CDS | 30.0% |
| ! | AACACTATGTACTAGTCTAA+TGG | + | chr1_4:54556310-54556329 | Msa0170480:CDS | 30.0% |
| ATGAATAGGTCTGAATTAAC+AGG | + | chr1_4:54556440-54556459 | Msa0170480:CDS | 30.0% | |
| GTTCAAAGTTATAATCTTGG+TGG | + | chr1_4:54556752-54556771 | Msa0170480:CDS | 30.0% | |
| ! | AAGTTATAATCTTGGTGGTA+TGG | + | chr1_4:54556757-54556776 | Msa0170480:CDS | 30.0% |
| ! | AGTTATAATCTTGGTGGTAT+GGG | + | chr1_4:54556758-54556777 | Msa0170480:CDS | 30.0% |
| TGTTATAACTGCAAGTAACA+TGG | - | chr1_4:54557165-54557184 | None:intergenic | 30.0% | |
| ! | TATTGACTATAGTTTGGTTG+GGG | - | chr1_4:54557219-54557238 | None:intergenic | 30.0% |
| ! | AATTGTTTGTTTAGAATGGG+AGG | + | chr1_4:54557495-54557514 | Msa0170480:CDS | 30.0% |
| ATTTCTTCTCATCTTCTTCT+TGG | - | chr1_4:54557635-54557654 | None:intergenic | 30.0% | |
| GAAGATGAGAAGAAATCAAT+TGG | + | chr1_4:54557639-54557658 | Msa0170480:CDS | 30.0% | |
| ACTCTCAAAAGATTTAATGG+CGG | + | chr1_4:54557668-54557687 | Msa0170480:CDS | 30.0% | |
| AGAATGACACTGAATAGATT+TGG | + | chr1_4:54557933-54557952 | Msa0170480:CDS | 30.0% | |
| ACACTTCTAGTAGTTCATTA+TGG | + | chr1_4:54557958-54557977 | Msa0170480:CDS | 30.0% | |
| TCATGTAACAAATGTTCAAC+TGG | - | chr1_4:54558356-54558375 | None:intergenic | 30.0% | |
| GGAAGATGGCATTGTTATAA+AGG | - | chr1_4:54555830-54555849 | None:intergenic | 35.0% | |
| AAGTGCTTAATTGTGCTAGA+GGG | - | chr1_4:54555935-54555954 | None:intergenic | 35.0% | |
| ! | GGAAGTTTTCTTCTTTCTTG+AGG | - | chr1_4:54556110-54556129 | None:intergenic | 35.0% |
| !! | GTACATGTGTACTCTTGTTT+TGG | - | chr1_4:54556407-54556426 | None:intergenic | 35.0% |
| AAGAAAATACTTGAGAGGTC+TGG | + | chr1_4:54556494-54556513 | Msa0170480:CDS | 35.0% | |
| ! | TTTGGAGAAAACTGGTGTTA+AGG | + | chr1_4:54556631-54556650 | Msa0170480:CDS | 35.0% |
| GTGTTAAGGCTAAGGATATT+GGG | + | chr1_4:54556645-54556664 | Msa0170480:CDS | 35.0% | |
| ACAATCATAGCAGAAAGAGA+AGG | - | chr1_4:54556707-54556726 | None:intergenic | 35.0% | |
| AAGAATGCAAACTAACCTGT+AGG | - | chr1_4:54556826-54556845 | None:intergenic | 35.0% | |
| TTGGGGCAGTGTATTAAATA+GGG | - | chr1_4:54557202-54557221 | None:intergenic | 35.0% | |
| ! | ATCACACTCAACTGGTATTT+TGG | + | chr1_4:54557447-54557466 | Msa0170480:CDS | 35.0% |
| AAAACCAACATCACAACACT+TGG | + | chr1_4:54557708-54557727 | Msa0170480:CDS | 35.0% | |
| ! | GAGCATTTTTGTATTCATGC+TGG | + | chr1_4:54557843-54557862 | Msa0170480:CDS | 35.0% |
| ! | CATTTTTGTATTCATGCTGG+TGG | + | chr1_4:54557846-54557865 | Msa0170480:CDS | 35.0% |
| !! | AAGAGCTGTTTTGGATGAAT+TGG | + | chr1_4:54557869-54557888 | Msa0170480:CDS | 35.0% |
| TGATCTTAGTGATTGGCATA+TGG | + | chr1_4:54557902-54557921 | Msa0170480:CDS | 35.0% | |
| ! | CTATTCAGTGTCATTCTTGA+TGG | - | chr1_4:54557930-54557949 | None:intergenic | 35.0% |
| TTGGCTTATACTGAAGCTAA+AGG | + | chr1_4:54557987-54558006 | Msa0170480:CDS | 35.0% | |
| TGGCTTATACTGAAGCTAAA+GGG | + | chr1_4:54557988-54558007 | Msa0170480:CDS | 35.0% | |
| TTAGAAAAGGTGATAGGACT+TGG | + | chr1_4:54558015-54558034 | Msa0170480:CDS | 35.0% | |
| TTAAATGTAACAGTGCTGTG+TGG | + | chr1_4:54558060-54558079 | Msa0170480:CDS | 35.0% | |
| TAAGGAGAAAAATCCATGGA+TGG | + | chr1_4:54558109-54558128 | Msa0170480:CDS | 35.0% | |
| !! | AACCATTGGTTCATCAAGTT+AGG | + | chr1_4:54558172-54558191 | Msa0170480:CDS | 35.0% |
| TTCCTAACTTGATGAACCAA+TGG | - | chr1_4:54558177-54558196 | None:intergenic | 35.0% | |
| CAAGTGCTTAATTGTGCTAG+AGG | - | chr1_4:54555936-54555955 | None:intergenic | 40.0% | |
| TCAACCAAGTAAACACCTCT+TGG | - | chr1_4:54556368-54556387 | None:intergenic | 40.0% | |
| ! | ATACTTGAGAGGTCTGGTTT+AGG | + | chr1_4:54556500-54556519 | Msa0170480:CDS | 40.0% |
| TGGAACACTCAATATTGCTG+GGG | - | chr1_4:54556543-54556562 | None:intergenic | 40.0% | |
| GTGGAACACTCAATATTGCT+GGG | - | chr1_4:54556544-54556563 | None:intergenic | 40.0% | |
| TGTTCCACCAAATCCTTGTA+TGG | + | chr1_4:54556556-54556575 | Msa0170480:CDS | 40.0% | |
| GAAGCTGAGGAAGTTATGTT+TGG | + | chr1_4:54556593-54556612 | Msa0170480:CDS | 40.0% | |
| !!! | TGGTGCTATTGATGAGCTTT+TGG | + | chr1_4:54556613-54556632 | Msa0170480:CDS | 40.0% |
| !! | GATGAGCTTTTGGAGAAAAC+TGG | + | chr1_4:54556623-54556642 | Msa0170480:CDS | 40.0% |
| ! | GAAAACTGGTGTTAAGGCTA+AGG | + | chr1_4:54556637-54556656 | Msa0170480:CDS | 40.0% |
| GGTGTTAAGGCTAAGGATAT+TGG | + | chr1_4:54556644-54556663 | Msa0170480:CDS | 40.0% | |
| ! | GGCTAAGGATATTGGGATTT+TGG | + | chr1_4:54556652-54556671 | Msa0170480:CDS | 40.0% |
| ! | ATAGCAGAAAGAGAAGGTGT+AGG | - | chr1_4:54556701-54556720 | None:intergenic | 40.0% |
| GCTTCAAGAAACTTCTCTCA+TGG | - | chr1_4:54557097-54557116 | None:intergenic | 40.0% | |
| AATCTGTACATGTGTGTGTG+TGG | - | chr1_4:54557140-54557159 | None:intergenic | 40.0% | |
| GTTGGGGCAGTGTATTAAAT+AGG | - | chr1_4:54557203-54557222 | None:intergenic | 40.0% | |
| TCCAAACTCTTATGCCTTAG+TGG | + | chr1_4:54557410-54557429 | Msa0170480:CDS | 40.0% | |
| ACCACTAAGGCATAAGAGTT+TGG | - | chr1_4:54557414-54557433 | None:intergenic | 40.0% | |
| ! | TTTGCTGTCAGAAGCTTTGT+TGG | - | chr1_4:54557538-54557557 | None:intergenic | 40.0% |
| TCTGACATAGGTAGGACTAA+TGG | - | chr1_4:54557735-54557754 | None:intergenic | 40.0% | |
| AACAGAAGCTGTTCTGACAT+AGG | - | chr1_4:54557747-54557766 | None:intergenic | 40.0% | |
| !! | GCTTCTGTTTTTCGCAACTT+TGG | + | chr1_4:54557758-54557777 | Msa0170480:CDS | 40.0% |
| CTTATACTGAAGCTAAAGGG+AGG | + | chr1_4:54557991-54558010 | Msa0170480:CDS | 40.0% | |
| GCTAAAGGGAGGATTAGAAA+AGG | + | chr1_4:54558002-54558021 | Msa0170480:CDS | 40.0% | |
| GGAGGATTAGAAAAGGTGAT+AGG | + | chr1_4:54558009-54558028 | Msa0170480:CDS | 40.0% | |
| AGGACTTGGCAAATTGCATT+TGG | + | chr1_4:54558029-54558048 | Msa0170480:CDS | 40.0% | |
| ! | TGGCAAATTGCATTTGGTTC+TGG | + | chr1_4:54558035-54558054 | Msa0170480:CDS | 40.0% |
| TTTCTCCTTAGCTGGATCAA+CGG | - | chr1_4:54558099-54558118 | None:intergenic | 40.0% | |
| ! | CATGGATTTTTCTCCTTAGC+TGG | - | chr1_4:54558107-54558126 | None:intergenic | 40.0% |
| CAGCTAAGGAGAAAAATCCA+TGG | + | chr1_4:54558105-54558124 | Msa0170480:CDS | 40.0% | |
| TCATGAATCTCATCCATCCA+TGG | - | chr1_4:54558125-54558144 | None:intergenic | 40.0% | |
| GAAAGTTGCTTGTCTAGTTG+AGG | + | chr1_4:54558447-54558466 | Msa0170480:three_prime_UTR | 40.0% | |
| TACTTCATGAGTCGTCCAAG+AGG | + | chr1_4:54556350-54556369 | Msa0170480:CDS | 45.0% | |
| !! | TCGTCCAAGAGGTGTTTACT+TGG | + | chr1_4:54556361-54556380 | Msa0170480:CDS | 45.0% |
| GGAACACTCAATATTGCTGG+GGG | - | chr1_4:54556542-54556561 | None:intergenic | 45.0% | |
| GGTGGAACACTCAATATTGC+TGG | - | chr1_4:54556545-54556564 | None:intergenic | 45.0% | |
| TCAGCCATACAAGGATTTGG+TGG | - | chr1_4:54556563-54556582 | None:intergenic | 45.0% | |
| GCTTCAGCCATACAAGGATT+TGG | - | chr1_4:54556566-54556585 | None:intergenic | 45.0% | |
| ATCCTTGTATGGCTGAAGCA+AGG | + | chr1_4:54556567-54556586 | Msa0170480:CDS | 45.0% | |
| TTCCTTGCTTCAGCCATACA+AGG | - | chr1_4:54556572-54556591 | None:intergenic | 45.0% | |
| TGAAGCAAGGAAAGAAGCTG+AGG | + | chr1_4:54556580-54556599 | Msa0170480:CDS | 45.0% | |
| ATGTGTGTGTGTGGACAACT+GGG | - | chr1_4:54557131-54557150 | None:intergenic | 45.0% | |
| GGGCAGTGTATTAAATAGGG+TGG | - | chr1_4:54557199-54557218 | None:intergenic | 45.0% | |
| TTATGCCTTAGTGGTGAGCA+TGG | + | chr1_4:54557419-54557438 | Msa0170480:CDS | 45.0% | |
| TGGAGAACATCACACTCAAC+TGG | + | chr1_4:54557439-54557458 | Msa0170480:CDS | 45.0% | |
| !! | TGTCAGAAGCTTTGTTGGAG+AGG | - | chr1_4:54557533-54557552 | None:intergenic | 45.0% |
| AAAGATTTAATGGCGGTCGC+CGG | + | chr1_4:54557675-54557694 | Msa0170480:CDS | 45.0% | |
| !!! | GTTGGTTTTGAGTGCTTCTC+CGG | - | chr1_4:54557697-54557716 | None:intergenic | 45.0% |
| ! | TGGACCAAGTGTTGTGATGT+TGG | - | chr1_4:54557715-54557734 | None:intergenic | 45.0% |
| GAAGCTGTTCTGACATAGGT+AGG | - | chr1_4:54557743-54557762 | None:intergenic | 45.0% | |
| TCCTGTTCATGTGCCTAAAG+TGG | + | chr1_4:54558148-54558167 | Msa0170480:CDS | 45.0% | |
| !! | GAACCAATGGTTGCCACTTT+AGG | - | chr1_4:54558164-54558183 | None:intergenic | 45.0% |
| GCTGAAGCTGCTCCAAAAAG+TGG | - | chr1_4:54556218-54556237 | None:intergenic | 50.0% | |
| TGTGTGTGTGTGGACAACTG+GGG | - | chr1_4:54557130-54557149 | None:intergenic | 50.0% | |
| CATGTGTGTGTGTGGACAAC+TGG | - | chr1_4:54557132-54557151 | None:intergenic | 50.0% | |
| GTTCTCCATGCTCACCACTA+AGG | - | chr1_4:54557427-54557446 | None:intergenic | 50.0% | |
| CTTTATGTGTTCGGACGGTG+TGG | - | chr1_4:54557581-54557600 | None:intergenic | 50.0% | |
| CACACCGTCCGAACACATAA+AGG | + | chr1_4:54557579-54557598 | Msa0170480:CDS | 50.0% | |
| ! | TGCTGGTGGAAGAGCTGTTT+TGG | + | chr1_4:54557860-54557879 | Msa0170480:CDS | 50.0% |
| ! | GCCACTTTAGGCACATGAAC+AGG | - | chr1_4:54558152-54558171 | None:intergenic | 50.0% |
| GTGCCTAAAGTGGCAACCAT+TGG | + | chr1_4:54558158-54558177 | Msa0170480:CDS | 50.0% | |
| ! | GGTGGTATGGGTTGTAGTGC+TGG | + | chr1_4:54556770-54556789 | Msa0170480:CDS | 55.0% |
| CCTGTAGGAGCTGCTTAGCA+AGG | - | chr1_4:54556811-54556830 | None:intergenic | 55.0% | |
| CCTTGCTAAGCAGCTCCTAC+AGG | + | chr1_4:54556808-54556827 | Msa0170480:CDS | 55.0% | |
| TTCGGACGGTGTGGATCAGT+TGG | - | chr1_4:54557572-54557591 | None:intergenic | 55.0% | |
| CGCGCCTTTATGTGTTCGGA+CGG | - | chr1_4:54557586-54557605 | None:intergenic | 55.0% | |
| CGTCCGAACACATAAAGGCG+CGG | + | chr1_4:54557584-54557603 | Msa0170480:CDS | 55.0% | |
| CGTCCGCGCCTTTATGTGTT+CGG | - | chr1_4:54557590-54557609 | None:intergenic | 55.0% | |
| GAGGACCGTTGATCCAGCTA+AGG | + | chr1_4:54558091-54558110 | Msa0170480:CDS | 55.0% | |
| GGCGCGGACGACAGATCATA+CGG | + | chr1_4:54557600-54557619 | Msa0170480:CDS | 60.0% | |
| GTGCTGTGTGGCGTGCATTG+AGG | + | chr1_4:54558072-54558091 | Msa0170480:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 54555812 | 54558491 | 54555812 | ID=Msa0170480;Name=Msa0170480 |
| chr1_4 | mRNA | 54555812 | 54558491 | 54555812 | ID=Msa0170480-mRNA-1;Parent=Msa0170480;Name=Msa0170480-mRNA-1;_AED=0.01;_eAED=0.01;_QI=256|1|1|1|1|1|2|298|516 |
| chr1_4 | exon | 54555812 | 54556829 | 54555812 | ID=Msa0170480-mRNA-1:exon:16313;Parent=Msa0170480-mRNA-1 |
| chr1_4 | exon | 54557405 | 54558491 | 54557405 | ID=Msa0170480-mRNA-1:exon:16314;Parent=Msa0170480-mRNA-1 |
| chr1_4 | five_prime_UTR | 54555812 | 54556067 | 54555812 | ID=Msa0170480-mRNA-1:five_prime_utr;Parent=Msa0170480-mRNA-1 |
| chr1_4 | CDS | 54556068 | 54556829 | 54556068 | ID=Msa0170480-mRNA-1:cds;Parent=Msa0170480-mRNA-1 |
| chr1_4 | CDS | 54557405 | 54558193 | 54557405 | ID=Msa0170480-mRNA-1:cds;Parent=Msa0170480-mRNA-1 |
| chr1_4 | three_prime_UTR | 54558194 | 54558491 | 54558194 | ID=Msa0170480-mRNA-1:three_prime_utr;Parent=Msa0170480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
