Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077940 | XP_013468760.1 | 99.612 | 516 | 2 | 0 | 1 | 516 | 1 | 516 | 0.0 | 1075 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077940 | sp|Q5XEP9|KCS2_ARATH | 75.479 | 522 | 115 | 6 | 3 | 516 | 9 | 525 | 0.0 | 825 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077940 | A0A072VLT9 | 99.612 | 516 | 2 | 0 | 1 | 516 | 1 | 516 | 0.0 | 1075 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005000 | Msa0077940 | -0.811544 | 6.637904e-51 | -8.615850e-47 |
| Msa0030340 | Msa0077940 | 0.933062 | 3.324994e-95 | -8.615850e-47 |
| Msa0077940 | Msa0098390 | -0.812397 | 4.327645e-51 | -8.615850e-47 |
| Msa0077940 | Msa0125850 | 0.871143 | 8.554469e-67 | -8.615850e-47 |
| Msa0077940 | Msa0170480 | 0.923012 | 4.650132e-89 | -8.615850e-47 |
| Msa0077940 | Msa0708460 | 0.803855 | 2.856160e-49 | -8.615850e-47 |
| Msa0077940 | Msa0743680 | 0.839460 | 1.564035e-57 | -8.615850e-47 |
| Msa0077940 | Msa0747720 | -0.811906 | 5.538464e-51 | -8.615850e-47 |
| Msa0077940 | Msa0863800 | 0.828035 | 1.124065e-54 | -8.615850e-47 |
| Msa0077940 | Msa1133220 | 0.815875 | 7.387596e-52 | -8.615850e-47 |
| Msa0077940 | Msa1164170 | -0.809213 | 2.114386e-50 | -8.615850e-47 |
| Msa0077940 | Msa1398860 | 0.812688 | 3.738043e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077940 | MtrunA17_Chr1g0188051 | 99.612 | 516 | 2 | 0 | 1 | 516 | 1 | 516 | 0.0 | 1075 |
| Msa0077940 | MtrunA17_Chr1g0166191 | 84.291 | 522 | 70 | 3 | 1 | 514 | 4 | 521 | 0.0 | 928 |
| Msa0077940 | MtrunA17_Chr4g0063011 | 75.960 | 495 | 119 | 0 | 18 | 512 | 6 | 500 | 0.0 | 808 |
| Msa0077940 | MtrunA17_Chr4g0035081 | 66.258 | 489 | 164 | 1 | 18 | 506 | 15 | 502 | 0.0 | 694 |
| Msa0077940 | MtrunA17_Chr7g0276251 | 65.600 | 500 | 163 | 5 | 17 | 507 | 30 | 529 | 0.0 | 677 |
| Msa0077940 | MtrunA17_Chr2g0306781 | 83.467 | 375 | 62 | 0 | 138 | 512 | 31 | 405 | 0.0 | 659 |
| Msa0077940 | MtrunA17_Chr1g0209881 | 61.258 | 493 | 190 | 1 | 20 | 512 | 5 | 496 | 0.0 | 632 |
| Msa0077940 | MtrunA17_Chr5g0423521 | 58.824 | 493 | 202 | 1 | 20 | 512 | 5 | 496 | 0.0 | 610 |
| Msa0077940 | MtrunA17_Chr6g0480561 | 64.203 | 433 | 154 | 1 | 77 | 508 | 38 | 470 | 0.0 | 592 |
| Msa0077940 | MtrunA17_Chr3g0136561 | 58.315 | 463 | 182 | 3 | 52 | 503 | 438 | 900 | 0.0 | 584 |
| Msa0077940 | MtrunA17_Chr7g0250661 | 84.407 | 295 | 46 | 0 | 218 | 512 | 1 | 295 | 0.0 | 542 |
| Msa0077940 | MtrunA17_Chr2g0282281 | 51.822 | 494 | 227 | 5 | 6 | 498 | 20 | 503 | 2.95e-173 | 498 |
| Msa0077940 | MtrunA17_Chr2g0277841 | 51.707 | 410 | 195 | 3 | 99 | 507 | 45 | 452 | 2.81e-152 | 442 |
| Msa0077940 | MtrunA17_Chr2g0295781 | 50.235 | 426 | 201 | 5 | 87 | 506 | 31 | 451 | 4.52e-152 | 442 |
| Msa0077940 | MtrunA17_Chr7g0276241 | 66.552 | 290 | 90 | 2 | 218 | 505 | 1 | 285 | 7.73e-146 | 420 |
| Msa0077940 | MtrunA17_Chr1g0204301 | 44.608 | 408 | 225 | 1 | 98 | 504 | 77 | 484 | 3.40e-129 | 385 |
| Msa0077940 | MtrunA17_Chr6g0461631 | 66.275 | 255 | 86 | 0 | 253 | 507 | 3 | 257 | 4.55e-126 | 369 |
| Msa0077940 | MtrunA17_Chr3g0115021 | 44.444 | 414 | 222 | 3 | 95 | 504 | 74 | 483 | 1.33e-122 | 368 |
| Msa0077940 | MtrunA17_Chr3g0115041 | 44.444 | 414 | 222 | 3 | 95 | 504 | 74 | 483 | 1.33e-122 | 368 |
| Msa0077940 | MtrunA17_Chr6g0469631 | 44.335 | 406 | 218 | 3 | 103 | 504 | 81 | 482 | 4.82e-116 | 351 |
| Msa0077940 | MtrunA17_Chr4g0026871 | 70.485 | 227 | 66 | 1 | 281 | 506 | 1 | 227 | 1.31e-114 | 338 |
| Msa0077940 | MtrunA17_Chr4g0030591 | 40.995 | 422 | 226 | 4 | 99 | 503 | 27 | 442 | 5.05e-110 | 335 |
| Msa0077940 | MtrunA17_Chr4g0030601 | 41.232 | 422 | 239 | 4 | 88 | 503 | 15 | 433 | 6.37e-110 | 335 |
| Msa0077940 | MtrunA17_Chr2g0327721 | 41.096 | 438 | 232 | 8 | 88 | 505 | 15 | 446 | 2.31e-108 | 331 |
| Msa0077940 | MtrunA17_Chr4g0030581 | 41.204 | 432 | 233 | 6 | 88 | 503 | 15 | 441 | 2.09e-107 | 328 |
| Msa0077940 | MtrunA17_Chr1g0212951 | 38.391 | 435 | 243 | 4 | 91 | 503 | 20 | 451 | 3.45e-107 | 328 |
| Msa0077940 | MtrunA17_Chr4g0026791 | 64.804 | 179 | 62 | 1 | 281 | 458 | 1 | 179 | 6.77e-79 | 244 |
| Msa0077940 | MtrunA17_Chr4g0026721 | 68.553 | 159 | 50 | 0 | 348 | 506 | 1 | 159 | 5.70e-76 | 236 |
| Msa0077940 | MtrunA17_Chr7g0250651 | 60.106 | 188 | 74 | 1 | 7 | 193 | 6 | 193 | 1.67e-74 | 234 |
| Msa0077940 | MtrunA17_Chr6g0461621 | 49.785 | 233 | 111 | 3 | 34 | 265 | 2 | 229 | 1.09e-67 | 217 |
| Msa0077940 | MtrunA17_Chr4g0026861 | 55.556 | 180 | 80 | 0 | 77 | 256 | 36 | 215 | 1.95e-67 | 216 |
| Msa0077940 | MtrunA17_Chr4g0026801 | 49.593 | 123 | 62 | 0 | 77 | 199 | 36 | 158 | 4.90e-36 | 131 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077940 | AT1G04220.1 | 75.479 | 522 | 115 | 6 | 3 | 516 | 9 | 525 | 0.0 | 825 |
| Msa0077940 | AT2G26640.1 | 76.768 | 495 | 115 | 0 | 18 | 512 | 15 | 509 | 0.0 | 822 |
| Msa0077940 | AT5G43760.1 | 77.016 | 496 | 108 | 3 | 26 | 515 | 34 | 529 | 0.0 | 776 |
| Msa0077940 | AT1G19440.1 | 66.531 | 490 | 163 | 1 | 15 | 504 | 24 | 512 | 0.0 | 692 |
| Msa0077940 | AT2G16280.1 | 64.898 | 490 | 171 | 1 | 15 | 504 | 20 | 508 | 0.0 | 684 |
| Msa0077940 | AT1G01120.1 | 62.903 | 496 | 178 | 3 | 17 | 506 | 31 | 526 | 0.0 | 678 |
| Msa0077940 | AT4G34510.1 | 63.103 | 477 | 169 | 4 | 31 | 506 | 15 | 485 | 0.0 | 637 |
| Msa0077940 | AT1G68530.1 | 59.838 | 493 | 197 | 1 | 20 | 512 | 6 | 497 | 0.0 | 630 |
| Msa0077940 | AT1G25450.1 | 59.229 | 493 | 200 | 1 | 20 | 512 | 1 | 492 | 0.0 | 618 |
| Msa0077940 | AT2G26250.1 | 56.923 | 520 | 193 | 5 | 13 | 504 | 32 | 548 | 0.0 | 602 |
| Msa0077940 | AT4G34250.1 | 57.025 | 484 | 201 | 3 | 29 | 506 | 5 | 487 | 0.0 | 559 |
| Msa0077940 | AT2G15090.1 | 57.447 | 470 | 190 | 4 | 46 | 506 | 11 | 479 | 0.0 | 550 |
| Msa0077940 | AT4G34520.1 | 56.379 | 486 | 200 | 4 | 32 | 506 | 6 | 490 | 0.0 | 547 |
| Msa0077940 | AT2G46720.1 | 56.757 | 444 | 187 | 3 | 66 | 506 | 24 | 465 | 0.0 | 547 |
| Msa0077940 | AT3G10280.1 | 56.941 | 425 | 168 | 4 | 89 | 506 | 42 | 458 | 0.0 | 525 |
| Msa0077940 | AT1G71160.1 | 48.578 | 422 | 211 | 4 | 84 | 504 | 30 | 446 | 7.75e-150 | 437 |
| Msa0077940 | AT5G49070.1 | 47.196 | 428 | 222 | 3 | 87 | 512 | 36 | 461 | 2.91e-141 | 415 |
| Msa0077940 | AT1G68530.2 | 56.522 | 345 | 148 | 2 | 20 | 363 | 6 | 349 | 1.39e-139 | 407 |
| Msa0077940 | AT3G52160.1 | 43.061 | 490 | 229 | 6 | 6 | 495 | 10 | 449 | 7.02e-139 | 409 |
| Msa0077940 | AT3G52160.2 | 49.041 | 365 | 155 | 2 | 131 | 495 | 3 | 336 | 6.91e-128 | 376 |
| Msa0077940 | AT2G28630.2 | 41.647 | 425 | 219 | 7 | 101 | 503 | 29 | 446 | 1.66e-111 | 339 |
| Msa0077940 | AT2G28630.1 | 41.647 | 425 | 219 | 7 | 101 | 503 | 29 | 446 | 1.66e-111 | 339 |
| Msa0077940 | AT1G07720.1 | 41.026 | 429 | 221 | 6 | 99 | 503 | 27 | 447 | 3.20e-108 | 331 |
| Msa0077940 | AT1G07720.2 | 41.026 | 429 | 221 | 6 | 99 | 503 | 70 | 490 | 4.36e-108 | 332 |
| Msa0077940 | AT5G04530.1 | 38.915 | 424 | 247 | 5 | 89 | 503 | 17 | 437 | 1.54e-106 | 326 |
| Msa0077940 | AT5G49070.2 | 42.294 | 279 | 160 | 1 | 87 | 365 | 36 | 313 | 5.74e-77 | 245 |
Find 113 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCACACTCAACTGGTATTT+TGG | 0.148092 | 1_2:-55102680 | Msa0077940:CDS |
| GGCTAAGGATATTGGGATTT+TGG | 0.160476 | 1_2:-55103507 | Msa0077940:CDS |
| GTTAGGAAGAAATTTGTTTA+AGG | 0.174752 | 1_2:-55101938 | Msa0077940:exon |
| TTCACTGATAGAAGAAAATT+TGG | 0.183181 | 1_2:+55104031 | None:intergenic |
| ATTTCTTCTCATCTTCTTCT+TGG | 0.218715 | 1_2:+55102495 | None:intergenic |
| TAACTCTTGGAAAATTTATA+AGG | 0.234565 | 1_2:+55104135 | None:intergenic |
| GTACATGTGTATTCTTGTTT+TGG | 0.247208 | 1_2:+55103755 | None:intergenic |
| TCCACATTTAATTAATCTTT+AGG | 0.260306 | 1_2:-55101903 | Msa0077940:three_prime_UTR |
| TGCTGGTGGAAGAGCTGTTT+TGG | 0.263824 | 1_2:-55102267 | Msa0077940:CDS |
| GGAAGATGGCATTGTTATAA+AGG | 0.273518 | 1_2:+55104332 | None:intergenic |
| CTATTCAGTGTCATTCTTGA+TGG | 0.275990 | 1_2:+55102200 | None:intergenic |
| TTTGCTGTCAGAAGCTTTGT+TGG | 0.296454 | 1_2:+55102592 | None:intergenic |
| GTGAATCATTATAAGTTAAG+AGG | 0.297927 | 1_2:-55103434 | Msa0077940:CDS |
| TGGCAAATTGCATTTGGTTC+TGG | 0.298723 | 1_2:-55102092 | Msa0077940:CDS |
| ATCAAATTGTTTGTTTAGAA+TGG | 0.305639 | 1_2:-55102636 | Msa0077940:CDS |
| ATCACTCTCAAAAGATTTAA+TGG | 0.313780 | 1_2:-55102462 | Msa0077940:CDS |
| TGGTGCTATTGATGAGCTTT+TGG | 0.331199 | 1_2:-55103546 | Msa0077940:CDS |
| ACACTTCTAGTAGTTCATTA+TGG | 0.333772 | 1_2:-55102169 | Msa0077940:CDS |
| GTATAACATATGATATGTTT+TGG | 0.336428 | 1_2:+55104252 | None:intergenic |
| ATGAATAGGTCTGAATTAAC+AGG | 0.348386 | 1_2:-55103719 | Msa0077940:CDS |
| TCCAAACTCTTATGCCTTAG+TGG | 0.348892 | 1_2:-55102717 | Msa0077940:CDS |
| GAACCAATGGTTGCCACTTT+AGG | 0.351358 | 1_2:+55101966 | None:intergenic |
| GCTTCAGCCATACAAGGATT+TGG | 0.353700 | 1_2:+55103596 | None:intergenic |
| GTGTTAAGGCTAAGGATATT+GGG | 0.356405 | 1_2:-55103514 | Msa0077940:CDS |
| AAAATTTATAAGGACTTGTT+TGG | 0.362540 | 1_2:+55104145 | None:intergenic |
| GGTGTTAAGGCTAAGGATAT+TGG | 0.367782 | 1_2:-55103515 | Msa0077940:CDS |
| AACACTATGTACTAGTCTTA+TGG | 0.372563 | 1_2:-55103849 | Msa0077940:CDS |
| GAAGATGGCATTGTTATAAA+GGG | 0.380459 | 1_2:+55104333 | None:intergenic |
| ATACTTGAGAGGTCTGGTTT+AGG | 0.382514 | 1_2:-55103659 | Msa0077940:CDS |
| AAGTTATAATCTTGGTGGTA+TGG | 0.383403 | 1_2:-55103402 | Msa0077940:CDS |
| ACCACTAAGGCATAAGAGTT+TGG | 0.387819 | 1_2:+55102716 | None:intergenic |
| AGGACTTGGCAAATTGCATT+TGG | 0.392984 | 1_2:-55102098 | Msa0077940:CDS |
| AGAATGACACTGAATAGATT+TGG | 0.394432 | 1_2:-55102194 | Msa0077940:CDS |
| GAAGATGAGAAGAAATCAAT+TGG | 0.399460 | 1_2:-55102488 | Msa0077940:CDS |
| GTGATTCAAAAGAAACTGAT+TGG | 0.399645 | 1_2:+55104074 | None:intergenic |
| GGTGGAACACTCAATATTGC+TGG | 0.400152 | 1_2:+55103617 | None:intergenic |
| AATGTTCAAAGTTATAATCT+TGG | 0.402519 | 1_2:-55103410 | Msa0077940:CDS |
| TCATGTAACAAATGTTCAAC+TGG | 0.405616 | 1_2:+55101774 | None:intergenic |
| TAGTTCATTATGGTATGAAT+TGG | 0.409549 | 1_2:-55102159 | Msa0077940:CDS |
| TCAAATTGTTTGTTTAGAAT+GGG | 0.411142 | 1_2:-55102635 | Msa0077940:CDS |
| GCCACTTTAGGCACATGAAC+AGG | 0.414943 | 1_2:+55101978 | None:intergenic |
| CACACCGTCCGAACACATAA+AGG | 0.416666 | 1_2:-55102548 | Msa0077940:CDS |
| AAATTGAAGTAATTAACTCT+TGG | 0.422322 | 1_2:+55104122 | None:intergenic |
| TGATCTTAGTGATTGGCATA+TGG | 0.423434 | 1_2:-55102225 | Msa0077940:CDS |
| GGTGGTATGGGTTGTAGTGC+TGG | 0.424592 | 1_2:-55103389 | Msa0077940:CDS |
| TCAAAAGCTAATTTAAAATC+AGG | 0.424969 | 1_2:+55102305 | None:intergenic |
| TAATTTAAAATCAGGAATGT+AGG | 0.428965 | 1_2:+55102313 | None:intergenic |
| AAAATCTTGATCTTAGTGAT+TGG | 0.430588 | 1_2:-55102232 | Msa0077940:CDS |
| CATATAGTTGAACAATATCA+TGG | 0.436793 | 1_2:+55103900 | None:intergenic |
| AACCATTGGTTCATCAAGTT+AGG | 0.443186 | 1_2:-55101955 | Msa0077940:exon |
| TTTGGAGAAAACTGGTGTTA+AGG | 0.445941 | 1_2:-55103528 | Msa0077940:CDS |
| GAAGCTGAGGAAGTTATGTT+TGG | 0.456300 | 1_2:-55103566 | Msa0077940:CDS |
| CCTTGCTAAGCAGCTCCTAC+AGG | 0.458272 | 1_2:-55103351 | Msa0077940:intron |
| TACTTCAATTTCAATACTCA+TGG | 0.459172 | 1_2:-55104110 | Msa0077940:exon |
| TTCCTTGCTTCAGCCATACA+AGG | 0.461441 | 1_2:+55103590 | None:intergenic |
| GGAGGATTAGAAAAGGTGAT+AGG | 0.461538 | 1_2:-55102118 | Msa0077940:CDS |
| AGTTATAATCTTGGTGGTAT+GGG | 0.463605 | 1_2:-55103401 | Msa0077940:CDS |
| AAGAAAATACTTGAGAGGTC+TGG | 0.464675 | 1_2:-55103665 | Msa0077940:CDS |
| CGTCCGCGCCTTTATGTGTT+CGG | 0.465432 | 1_2:+55102540 | None:intergenic |
| TCAACCAAGTAAACACCTCT+TGG | 0.467981 | 1_2:+55103794 | None:intergenic |
| TCCTGTTCATGTGCCTAAAG+TGG | 0.481276 | 1_2:-55101979 | Msa0077940:CDS |
| TGGAGAACATCACACTCAAC+TGG | 0.498098 | 1_2:-55102688 | Msa0077940:CDS |
| GTGGAACACTCAATATTGCT+GGG | 0.499640 | 1_2:+55103618 | None:intergenic |
| AATTTAAAATCAGGAATGTA+GGG | 0.500091 | 1_2:+55102314 | None:intergenic |
| TCTGACATAGGTAGGACTAA+TGG | 0.501024 | 1_2:+55102395 | None:intergenic |
| TTCCTAACTTGATGAACCAA+TGG | 0.503576 | 1_2:+55101953 | None:intergenic |
| TCGTCCAAGAGGTGTTTACT+TGG | 0.505159 | 1_2:-55103798 | Msa0077940:CDS |
| TGAATCATTATAAGTTAAGA+GGG | 0.506304 | 1_2:-55103433 | Msa0077940:CDS |
| TCCTAAAGATTAATTAAATG+TGG | 0.506314 | 1_2:+55101902 | None:intergenic |
| GTTCAAAGTTATAATCTTGG+TGG | 0.515718 | 1_2:-55103407 | Msa0077940:CDS |
| TGGCTTATACTGAAGCTAAA+GGG | 0.515795 | 1_2:-55102139 | Msa0077940:CDS |
| TTAGAAAAGGTGATAGGACT+TGG | 0.517295 | 1_2:-55102112 | Msa0077940:CDS |
| AAACTTAAATATGTGAAACT+TGG | 0.519226 | 1_2:-55104010 | Msa0077940:CDS |
| GAAAGTTGCTTGTCTAGTTG+AGG | 0.519493 | 1_2:-55101678 | Msa0077940:three_prime_UTR |
| CGCGCCTTTATGTGTTCGGA+CGG | 0.519941 | 1_2:+55102544 | None:intergenic |
| AAAGATTTAATGGCGGTCGC+CGG | 0.521478 | 1_2:-55102452 | Msa0077940:CDS |
| GAAAACTGGTGTTAAGGCTA+AGG | 0.522687 | 1_2:-55103522 | Msa0077940:CDS |
| TTGGCTTATACTGAAGCTAA+AGG | 0.523513 | 1_2:-55102140 | Msa0077940:CDS |
| TGTTCCACCAAATCCTTGTA+TGG | 0.528304 | 1_2:-55103603 | Msa0077940:CDS |
| GTTCTCCATGCTCACCACTA+AGG | 0.531929 | 1_2:+55102703 | None:intergenic |
| TGGACCAAGTGTTGTGATGT+TGG | 0.537554 | 1_2:+55102415 | None:intergenic |
| TTCAAAAGAAAATACTTGAG+AGG | 0.537603 | 1_2:-55103670 | Msa0077940:CDS |
| TGTCAGAAGCTTTGTTGGAG+AGG | 0.549538 | 1_2:+55102597 | None:intergenic |
| TTTCTCCTTAGCTGGATCAA+CGG | 0.549864 | 1_2:+55102031 | None:intergenic |
| GTGCCTAAAGTGGCAACCAT+TGG | 0.552723 | 1_2:-55101969 | Msa0077940:CDS |
| GCTAAAGGGAGGATTAGAAA+AGG | 0.553131 | 1_2:-55102125 | Msa0077940:CDS |
| AATTGTTTGTTTAGAATGGG+AGG | 0.568502 | 1_2:-55102632 | Msa0077940:CDS |
| TCAGCCATACAAGGATTTGG+TGG | 0.568816 | 1_2:+55103599 | None:intergenic |
| TCATGAATCTCATCCATCCA+TGG | 0.570459 | 1_2:+55102005 | None:intergenic |
| AAAACCAACATCACAACACT+TGG | 0.570838 | 1_2:-55102419 | Msa0077940:CDS |
| AACAGAAGCTGTTCTGACAT+AGG | 0.577420 | 1_2:+55102383 | None:intergenic |
| TTCGGACGGTGTGGATCAGT+TGG | 0.577447 | 1_2:+55102558 | None:intergenic |
| CAAGTGCTTAATTGTGCTAG+AGG | 0.580140 | 1_2:+55104226 | None:intergenic |
| GGCGCGGACGACAGATCATA+CGG | 0.585092 | 1_2:-55102527 | Msa0077940:CDS |
| GAAACAAAATCAAATGAGAG+TGG | 0.588416 | 1_2:+55104184 | None:intergenic |
| GAAGCTGTTCTGACATAGGT+AGG | 0.592086 | 1_2:+55102387 | None:intergenic |
| ATCCTTGTATGGCTGAAGCA+AGG | 0.595750 | 1_2:-55103592 | Msa0077940:CDS |
| GTGCTGTGTGGCGTGCATTG+AGG | 0.599018 | 1_2:-55102055 | Msa0077940:CDS |
| GAGGACCGTTGATCCAGCTA+AGG | 0.607671 | 1_2:-55102036 | Msa0077940:CDS |
| TTATGCCTTAGTGGTGAGCA+TGG | 0.609284 | 1_2:-55102708 | Msa0077940:CDS |
| ATAGCAGAAAGAGAAGGTGT+AGG | 0.612815 | 1_2:+55103461 | None:intergenic |
| CCTGTAGGAGCTGCTTAGCA+AGG | 0.618822 | 1_2:+55103351 | None:intergenic |
| TGAAGCAAGGAAAGAAGCTG+AGG | 0.624018 | 1_2:-55103579 | Msa0077940:CDS |
| AAGTGCTTAATTGTGCTAGA+GGG | 0.628631 | 1_2:+55104227 | None:intergenic |
| CTTTATGTGTTCGGACGGTG+TGG | 0.639949 | 1_2:+55102549 | None:intergenic |
| TGGAACACTCAATATTGCTG+GGG | 0.643916 | 1_2:+55103619 | None:intergenic |
| ACAATCATAGCAGAAAGAGA+AGG | 0.652463 | 1_2:+55103455 | None:intergenic |
| TACTTCATGAGTCGTCCAAG+AGG | 0.658967 | 1_2:-55103809 | Msa0077940:CDS |
| CTTATACTGAAGCTAAAGGG+AGG | 0.665669 | 1_2:-55102136 | Msa0077940:CDS |
| GGAACACTCAATATTGCTGG+GGG | 0.681776 | 1_2:+55103620 | None:intergenic |
| CGTCCGAACACATAAAGGCG+CGG | 0.707110 | 1_2:-55102543 | Msa0077940:CDS |
| ACTCTCAAAAGATTTAATGG+CGG | 0.725346 | 1_2:-55102459 | Msa0077940:CDS |
| TTAAATGTAATAGTGCTGTG+TGG | 0.774068 | 1_2:-55102067 | Msa0077940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGTATTATGAATAAAGAA+TGG | + | chr1_2:55102719-55102738 | None:intergenic | 15.0% |
| !! | TAATTTCAATGATTTATTCA+TGG | + | chr1_2:55103158-55103177 | None:intergenic | 15.0% |
| !!! | AACATTTTTGTTATATGTAT+AGG | - | chr1_2:55103259-55103278 | Msa0077940:intron | 15.0% |
| !! | TTGAATGTGATGAAAAAATA+TGG | + | chr1_2:55101695-55101714 | None:intergenic | 20.0% |
| !!! | GTATAACATATGATATGTTT+TGG | + | chr1_2:55101754-55101773 | None:intergenic | 20.0% |
| !!! | AAAATTTATAAGGACTTGTT+TGG | + | chr1_2:55101861-55101880 | None:intergenic | 20.0% |
| !! | TAACTCTTGGAAAATTTATA+AGG | + | chr1_2:55101871-55101890 | None:intergenic | 20.0% |
| !! | AAATTGAAGTAATTAACTCT+TGG | + | chr1_2:55101884-55101903 | None:intergenic | 20.0% |
| !! | AAACTTAAATATGTGAAACT+TGG | - | chr1_2:55101993-55102012 | Msa0077940:CDS | 20.0% |
| !!! | TACATTTTCTGATGAAAATT+TGG | - | chr1_2:55102307-55102326 | Msa0077940:CDS | 20.0% |
| !! | TGAATCATTATAAGTTAAGA+GGG | - | chr1_2:55102570-55102589 | Msa0077940:CDS | 20.0% |
| !! | AATGTTCAAAGTTATAATCT+TGG | - | chr1_2:55102593-55102612 | Msa0077940:CDS | 20.0% |
| !!! | AATACTATTGTTTAACTTCA+TGG | - | chr1_2:55102731-55102750 | Msa0077940:intron | 20.0% |
| !!! | TTCAAGTTAGAACAAAATTA+GGG | - | chr1_2:55102806-55102825 | Msa0077940:intron | 20.0% |
| !!! | TTCAAATTATAGCTTTAAGT+TGG | - | chr1_2:55102835-55102854 | Msa0077940:intron | 20.0% |
| !! | TAGTTGTAATTGTAAAGATT+TGG | + | chr1_2:55103130-55103149 | None:intergenic | 20.0% |
| !! | AATCTTTACAATTACAACTA+AGG | - | chr1_2:55103130-55103149 | Msa0077940:intron | 20.0% |
| !! | ATCTTTACAATTACAACTAA+GGG | - | chr1_2:55103131-55103150 | Msa0077940:intron | 20.0% |
| !!! | CTATAATAACATGGTATTTT+TGG | + | chr1_2:55103224-55103243 | None:intergenic | 20.0% |
| !!! | ATTGTTTTGCTATAATAACA+TGG | + | chr1_2:55103233-55103252 | None:intergenic | 20.0% |
| !! | ATCAAATTGTTTGTTTAGAA+TGG | - | chr1_2:55103367-55103386 | Msa0077940:CDS | 20.0% |
| !!! | TCAAATTGTTTGTTTAGAAT+GGG | - | chr1_2:55103368-55103387 | Msa0077940:CDS | 20.0% |
| !!! | AATTTAAAATCAGGAATGTA+GGG | + | chr1_2:55103692-55103711 | None:intergenic | 20.0% |
| !!! | TAATTTAAAATCAGGAATGT+AGG | + | chr1_2:55103693-55103712 | None:intergenic | 20.0% |
| !!! | TCAAAAGCTAATTTAAAATC+AGG | + | chr1_2:55103701-55103720 | None:intergenic | 20.0% |
| !! | TCCACATTTAATTAATCTTT+AGG | - | chr1_2:55104100-55104119 | Msa0077940:exon | 20.0% |
| !! | TCCTAAAGATTAATTAAATG+TGG | + | chr1_2:55104104-55104123 | None:intergenic | 20.0% |
| ! | TGATGAAAAAATATGGAAGA+TGG | + | chr1_2:55101688-55101707 | None:intergenic | 25.0% |
| !!! | CATTCAATTCCTTCTTTTTT+TGG | - | chr1_2:55101708-55101727 | Msa0077940:three_prime_UTR | 25.0% |
| ! | AAATGTAGACCAAAAAAAGA+AGG | + | chr1_2:55101720-55101739 | None:intergenic | 25.0% |
| ! | TACTTCAATTTCAATACTCA+TGG | - | chr1_2:55101893-55101912 | Msa0077940:three_prime_UTR | 25.0% |
| ! | TTCACTGATAGAAGAAAATT+TGG | + | chr1_2:55101975-55101994 | None:intergenic | 25.0% |
| !!! | TAGCTTTTGAGATTAAGTAA+TGG | + | chr1_2:55102022-55102041 | None:intergenic | 25.0% |
| ! | CATATAGTTGAACAATATCA+TGG | + | chr1_2:55102106-55102125 | None:intergenic | 25.0% |
| !! | CTAGAGAAATTTTCATGAAT+AGG | - | chr1_2:55102270-55102289 | Msa0077940:CDS | 25.0% |
| ! | TTCAAAAGAAAATACTTGAG+AGG | - | chr1_2:55102333-55102352 | Msa0077940:CDS | 25.0% |
| ! | GTGAATCATTATAAGTTAAG+AGG | - | chr1_2:55102569-55102588 | Msa0077940:CDS | 25.0% |
| !! | CTTCAAGTTAGAACAAAATT+AGG | - | chr1_2:55102805-55102824 | Msa0077940:intron | 25.0% |
| ! | TCAAGTTAGAACAAAATTAG+GGG | - | chr1_2:55102807-55102826 | Msa0077940:intron | 25.0% |
| ! | ACCAAAAGTAAATTAAGTAC+TGG | - | chr1_2:55102946-55102965 | Msa0077940:intron | 25.0% |
| !! | ACCAGTACTTAATTTACTTT+TGG | + | chr1_2:55102950-55102969 | None:intergenic | 25.0% |
| !! | TTATTGACTATAGTTTGGTT+GGG | + | chr1_2:55103096-55103115 | None:intergenic | 25.0% |
| !! | ATTATTGACTATAGTTTGGT+TGG | + | chr1_2:55103097-55103116 | None:intergenic | 25.0% |
| !! | TGGTATTATTGACTATAGTT+TGG | + | chr1_2:55103101-55103120 | None:intergenic | 25.0% |
| ! | TTGTAAAGATTTGGACAATT+TGG | + | chr1_2:55103121-55103140 | None:intergenic | 25.0% |
| ! | ATCACTCTCAAAAGATTTAA+TGG | - | chr1_2:55103541-55103560 | Msa0077940:CDS | 25.0% |
| ! | AAAATCTTGATCTTAGTGAT+TGG | - | chr1_2:55103771-55103790 | Msa0077940:CDS | 25.0% |
| ! | TAGTTCATTATGGTATGAAT+TGG | - | chr1_2:55103844-55103863 | Msa0077940:CDS | 25.0% |
| !! | GTTAGGAAGAAATTTGTTTA+AGG | - | chr1_2:55104065-55104084 | Msa0077940:CDS | 25.0% |
| !! | TCATAGTACACATTTTATGA+AGG | + | chr1_2:55104272-55104291 | None:intergenic | 25.0% |
| GAAGATGGCATTGTTATAAA+GGG | + | chr1_2:55101673-55101692 | None:intergenic | 30.0% | |
| GAAACAAAATCAAATGAGAG+TGG | + | chr1_2:55101822-55101841 | None:intergenic | 30.0% | |
| GTGATTCAAAAGAAACTGAT+TGG | + | chr1_2:55101932-55101951 | None:intergenic | 30.0% | |
| CAAAAAGTGGTATGAGTAAA+AGG | + | chr1_2:55102049-55102068 | None:intergenic | 30.0% | |
| !! | CTTTTACTCATACCACTTTT+TGG | - | chr1_2:55102047-55102066 | Msa0077940:CDS | 30.0% |
| !! | AACACTATGTACTAGTCTTA+TGG | - | chr1_2:55102154-55102173 | Msa0077940:CDS | 30.0% |
| !! | GTACATGTGTATTCTTGTTT+TGG | + | chr1_2:55102251-55102270 | None:intergenic | 30.0% |
| ATGAATAGGTCTGAATTAAC+AGG | - | chr1_2:55102284-55102303 | Msa0077940:CDS | 30.0% | |
| GTTCAAAGTTATAATCTTGG+TGG | - | chr1_2:55102596-55102615 | Msa0077940:CDS | 30.0% | |
| ! | AAGTTATAATCTTGGTGGTA+TGG | - | chr1_2:55102601-55102620 | Msa0077940:CDS | 30.0% |
| ! | AGTTATAATCTTGGTGGTAT+GGG | - | chr1_2:55102602-55102621 | Msa0077940:CDS | 30.0% |
| !! | GTTTAACTTCATGGTCATTT+TGG | - | chr1_2:55102740-55102759 | Msa0077940:intron | 30.0% |
| TGTTATAACTGCAAGTAACA+TGG | + | chr1_2:55103041-55103060 | None:intergenic | 30.0% | |
| ! | TATTGACTATAGTTTGGTTG+GGG | + | chr1_2:55103095-55103114 | None:intergenic | 30.0% |
| ! | AATTGTTTGTTTAGAATGGG+AGG | - | chr1_2:55103371-55103390 | Msa0077940:CDS | 30.0% |
| ATTTCTTCTCATCTTCTTCT+TGG | + | chr1_2:55103511-55103530 | None:intergenic | 30.0% | |
| GAAGATGAGAAGAAATCAAT+TGG | - | chr1_2:55103515-55103534 | Msa0077940:CDS | 30.0% | |
| ACTCTCAAAAGATTTAATGG+CGG | - | chr1_2:55103544-55103563 | Msa0077940:CDS | 30.0% | |
| AGAATGACACTGAATAGATT+TGG | - | chr1_2:55103809-55103828 | Msa0077940:CDS | 30.0% | |
| ACACTTCTAGTAGTTCATTA+TGG | - | chr1_2:55103834-55103853 | Msa0077940:CDS | 30.0% | |
| TTAAATGTAATAGTGCTGTG+TGG | - | chr1_2:55103936-55103955 | Msa0077940:CDS | 30.0% | |
| TCATGTAACAAATGTTCAAC+TGG | + | chr1_2:55104232-55104251 | None:intergenic | 30.0% | |
| GGAAGATGGCATTGTTATAA+AGG | + | chr1_2:55101674-55101693 | None:intergenic | 35.0% | |
| AAGTGCTTAATTGTGCTAGA+GGG | + | chr1_2:55101779-55101798 | None:intergenic | 35.0% | |
| ! | GGAAGTTTTCTTCTTTCTTG+AGG | + | chr1_2:55101954-55101973 | None:intergenic | 35.0% |
| AAGAAAATACTTGAGAGGTC+TGG | - | chr1_2:55102338-55102357 | Msa0077940:CDS | 35.0% | |
| ! | TTTGGAGAAAACTGGTGTTA+AGG | - | chr1_2:55102475-55102494 | Msa0077940:CDS | 35.0% |
| GTGTTAAGGCTAAGGATATT+GGG | - | chr1_2:55102489-55102508 | Msa0077940:CDS | 35.0% | |
| ACAATCATAGCAGAAAGAGA+AGG | + | chr1_2:55102551-55102570 | None:intergenic | 35.0% | |
| TTGGGGCAGTGTATTAAATA+GGG | + | chr1_2:55103078-55103097 | None:intergenic | 35.0% | |
| ! | ATCACACTCAACTGGTATTT+TGG | - | chr1_2:55103323-55103342 | Msa0077940:intron | 35.0% |
| AAAACCAACATCACAACACT+TGG | - | chr1_2:55103584-55103603 | Msa0077940:CDS | 35.0% | |
| ! | GAGCATTTTTGTATTCATGC+TGG | - | chr1_2:55103719-55103738 | Msa0077940:CDS | 35.0% |
| ! | CATTTTTGTATTCATGCTGG+TGG | - | chr1_2:55103722-55103741 | Msa0077940:CDS | 35.0% |
| !! | AAGAGCTGTTTTGGATGAAT+TGG | - | chr1_2:55103745-55103764 | Msa0077940:CDS | 35.0% |
| TGATCTTAGTGATTGGCATA+TGG | - | chr1_2:55103778-55103797 | Msa0077940:CDS | 35.0% | |
| ! | CTATTCAGTGTCATTCTTGA+TGG | + | chr1_2:55103806-55103825 | None:intergenic | 35.0% |
| TTGGCTTATACTGAAGCTAA+AGG | - | chr1_2:55103863-55103882 | Msa0077940:CDS | 35.0% | |
| TGGCTTATACTGAAGCTAAA+GGG | - | chr1_2:55103864-55103883 | Msa0077940:CDS | 35.0% | |
| TTAGAAAAGGTGATAGGACT+TGG | - | chr1_2:55103891-55103910 | Msa0077940:CDS | 35.0% | |
| TAAGGAGAAAAATCCATGGA+TGG | - | chr1_2:55103985-55104004 | Msa0077940:CDS | 35.0% | |
| !! | AACCATTGGTTCATCAAGTT+AGG | - | chr1_2:55104048-55104067 | Msa0077940:CDS | 35.0% |
| TTCCTAACTTGATGAACCAA+TGG | + | chr1_2:55104053-55104072 | None:intergenic | 35.0% | |
| CAAGTGCTTAATTGTGCTAG+AGG | + | chr1_2:55101780-55101799 | None:intergenic | 40.0% | |
| TCAACCAAGTAAACACCTCT+TGG | + | chr1_2:55102212-55102231 | None:intergenic | 40.0% | |
| ! | ATACTTGAGAGGTCTGGTTT+AGG | - | chr1_2:55102344-55102363 | Msa0077940:CDS | 40.0% |
| TGGAACACTCAATATTGCTG+GGG | + | chr1_2:55102387-55102406 | None:intergenic | 40.0% | |
| GTGGAACACTCAATATTGCT+GGG | + | chr1_2:55102388-55102407 | None:intergenic | 40.0% | |
| TGTTCCACCAAATCCTTGTA+TGG | - | chr1_2:55102400-55102419 | Msa0077940:CDS | 40.0% | |
| GAAGCTGAGGAAGTTATGTT+TGG | - | chr1_2:55102437-55102456 | Msa0077940:CDS | 40.0% | |
| !!! | TGGTGCTATTGATGAGCTTT+TGG | - | chr1_2:55102457-55102476 | Msa0077940:CDS | 40.0% |
| !! | GATGAGCTTTTGGAGAAAAC+TGG | - | chr1_2:55102467-55102486 | Msa0077940:CDS | 40.0% |
| ! | GAAAACTGGTGTTAAGGCTA+AGG | - | chr1_2:55102481-55102500 | Msa0077940:CDS | 40.0% |
| GGTGTTAAGGCTAAGGATAT+TGG | - | chr1_2:55102488-55102507 | Msa0077940:CDS | 40.0% | |
| ! | GGCTAAGGATATTGGGATTT+TGG | - | chr1_2:55102496-55102515 | Msa0077940:CDS | 40.0% |
| ! | ATAGCAGAAAGAGAAGGTGT+AGG | + | chr1_2:55102545-55102564 | None:intergenic | 40.0% |
| GCTTCAAGAAACTTCTCTCA+TGG | + | chr1_2:55102973-55102992 | None:intergenic | 40.0% | |
| AATCTGTACATGTGTGTGTG+TGG | + | chr1_2:55103016-55103035 | None:intergenic | 40.0% | |
| GTTGGGGCAGTGTATTAAAT+AGG | + | chr1_2:55103079-55103098 | None:intergenic | 40.0% | |
| TCCAAACTCTTATGCCTTAG+TGG | - | chr1_2:55103286-55103305 | Msa0077940:intron | 40.0% | |
| ACCACTAAGGCATAAGAGTT+TGG | + | chr1_2:55103290-55103309 | None:intergenic | 40.0% | |
| ! | TTTGCTGTCAGAAGCTTTGT+TGG | + | chr1_2:55103414-55103433 | None:intergenic | 40.0% |
| TCTGACATAGGTAGGACTAA+TGG | + | chr1_2:55103611-55103630 | None:intergenic | 40.0% | |
| AACAGAAGCTGTTCTGACAT+AGG | + | chr1_2:55103623-55103642 | None:intergenic | 40.0% | |
| !! | GCTTCTGTTTTTCGCAACTT+TGG | - | chr1_2:55103634-55103653 | Msa0077940:CDS | 40.0% |
| CTTATACTGAAGCTAAAGGG+AGG | - | chr1_2:55103867-55103886 | Msa0077940:CDS | 40.0% | |
| GCTAAAGGGAGGATTAGAAA+AGG | - | chr1_2:55103878-55103897 | Msa0077940:CDS | 40.0% | |
| GGAGGATTAGAAAAGGTGAT+AGG | - | chr1_2:55103885-55103904 | Msa0077940:CDS | 40.0% | |
| AGGACTTGGCAAATTGCATT+TGG | - | chr1_2:55103905-55103924 | Msa0077940:CDS | 40.0% | |
| ! | TGGCAAATTGCATTTGGTTC+TGG | - | chr1_2:55103911-55103930 | Msa0077940:CDS | 40.0% |
| TTTCTCCTTAGCTGGATCAA+CGG | + | chr1_2:55103975-55103994 | None:intergenic | 40.0% | |
| ! | CATGGATTTTTCTCCTTAGC+TGG | + | chr1_2:55103983-55104002 | None:intergenic | 40.0% |
| CAGCTAAGGAGAAAAATCCA+TGG | - | chr1_2:55103981-55104000 | Msa0077940:CDS | 40.0% | |
| TCATGAATCTCATCCATCCA+TGG | + | chr1_2:55104001-55104020 | None:intergenic | 40.0% | |
| GAAAGTTGCTTGTCTAGTTG+AGG | - | chr1_2:55104325-55104344 | Msa0077940:five_prime_UTR | 40.0% | |
| TACTTCATGAGTCGTCCAAG+AGG | - | chr1_2:55102194-55102213 | Msa0077940:CDS | 45.0% | |
| !! | TCGTCCAAGAGGTGTTTACT+TGG | - | chr1_2:55102205-55102224 | Msa0077940:CDS | 45.0% |
| GGAACACTCAATATTGCTGG+GGG | + | chr1_2:55102386-55102405 | None:intergenic | 45.0% | |
| GGTGGAACACTCAATATTGC+TGG | + | chr1_2:55102389-55102408 | None:intergenic | 45.0% | |
| TCAGCCATACAAGGATTTGG+TGG | + | chr1_2:55102407-55102426 | None:intergenic | 45.0% | |
| GCTTCAGCCATACAAGGATT+TGG | + | chr1_2:55102410-55102429 | None:intergenic | 45.0% | |
| ATCCTTGTATGGCTGAAGCA+AGG | - | chr1_2:55102411-55102430 | Msa0077940:CDS | 45.0% | |
| TTCCTTGCTTCAGCCATACA+AGG | + | chr1_2:55102416-55102435 | None:intergenic | 45.0% | |
| TGAAGCAAGGAAAGAAGCTG+AGG | - | chr1_2:55102424-55102443 | Msa0077940:CDS | 45.0% | |
| ATGCATGCAAACCAACCTGT+AGG | + | chr1_2:55102670-55102689 | None:intergenic | 45.0% | |
| ATGTGTGTGTGTGGACAACT+GGG | + | chr1_2:55103007-55103026 | None:intergenic | 45.0% | |
| GGGCAGTGTATTAAATAGGG+TGG | + | chr1_2:55103075-55103094 | None:intergenic | 45.0% | |
| TTATGCCTTAGTGGTGAGCA+TGG | - | chr1_2:55103295-55103314 | Msa0077940:intron | 45.0% | |
| TGGAGAACATCACACTCAAC+TGG | - | chr1_2:55103315-55103334 | Msa0077940:intron | 45.0% | |
| !! | TGTCAGAAGCTTTGTTGGAG+AGG | + | chr1_2:55103409-55103428 | None:intergenic | 45.0% |
| AAAGATTTAATGGCGGTCGC+CGG | - | chr1_2:55103551-55103570 | Msa0077940:CDS | 45.0% | |
| !!! | GTTGGTTTTGAGTGCTTCTC+CGG | + | chr1_2:55103573-55103592 | None:intergenic | 45.0% |
| ! | TGGACCAAGTGTTGTGATGT+TGG | + | chr1_2:55103591-55103610 | None:intergenic | 45.0% |
| GAAGCTGTTCTGACATAGGT+AGG | + | chr1_2:55103619-55103638 | None:intergenic | 45.0% | |
| TCCTGTTCATGTGCCTAAAG+TGG | - | chr1_2:55104024-55104043 | Msa0077940:CDS | 45.0% | |
| !! | GAACCAATGGTTGCCACTTT+AGG | + | chr1_2:55104040-55104059 | None:intergenic | 45.0% |
| GCTGAAGCTGCTCCAAAAAG+TGG | + | chr1_2:55102062-55102081 | None:intergenic | 50.0% | |
| TGTGTGTGTGTGGACAACTG+GGG | + | chr1_2:55103006-55103025 | None:intergenic | 50.0% | |
| CATGTGTGTGTGTGGACAAC+TGG | + | chr1_2:55103008-55103027 | None:intergenic | 50.0% | |
| GTTCTCCATGCTCACCACTA+AGG | + | chr1_2:55103303-55103322 | None:intergenic | 50.0% | |
| CTTTATGTGTTCGGACGGTG+TGG | + | chr1_2:55103457-55103476 | None:intergenic | 50.0% | |
| CACACCGTCCGAACACATAA+AGG | - | chr1_2:55103455-55103474 | Msa0077940:CDS | 50.0% | |
| ! | TGCTGGTGGAAGAGCTGTTT+TGG | - | chr1_2:55103736-55103755 | Msa0077940:CDS | 50.0% |
| ! | GCCACTTTAGGCACATGAAC+AGG | + | chr1_2:55104028-55104047 | None:intergenic | 50.0% |
| GTGCCTAAAGTGGCAACCAT+TGG | - | chr1_2:55104034-55104053 | Msa0077940:CDS | 50.0% | |
| ! | GGTGGTATGGGTTGTAGTGC+TGG | - | chr1_2:55102614-55102633 | Msa0077940:CDS | 55.0% |
| CCTGTAGGAGCTGCTTAGCA+AGG | + | chr1_2:55102655-55102674 | None:intergenic | 55.0% | |
| CCTTGCTAAGCAGCTCCTAC+AGG | - | chr1_2:55102652-55102671 | Msa0077940:CDS | 55.0% | |
| GCTAAGCAGCTCCTACAGGT+TGG | - | chr1_2:55102656-55102675 | Msa0077940:CDS | 55.0% | |
| TTCGGACGGTGTGGATCAGT+TGG | + | chr1_2:55103448-55103467 | None:intergenic | 55.0% | |
| CGCGCCTTTATGTGTTCGGA+CGG | + | chr1_2:55103462-55103481 | None:intergenic | 55.0% | |
| CGTCCGAACACATAAAGGCG+CGG | - | chr1_2:55103460-55103479 | Msa0077940:CDS | 55.0% | |
| CGTCCGCGCCTTTATGTGTT+CGG | + | chr1_2:55103466-55103485 | None:intergenic | 55.0% | |
| GAGGACCGTTGATCCAGCTA+AGG | - | chr1_2:55103967-55103986 | Msa0077940:CDS | 55.0% | |
| GGCGCGGACGACAGATCATA+CGG | - | chr1_2:55103476-55103495 | Msa0077940:CDS | 60.0% | |
| GTGCTGTGTGGCGTGCATTG+AGG | - | chr1_2:55103948-55103967 | Msa0077940:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 55101656 | 55104369 | 55101656 | ID=Msa0077940;Name=Msa0077940 |
| chr1_2 | mRNA | 55101656 | 55104369 | 55101656 | ID=Msa0077940-mRNA-1;Parent=Msa0077940;Name=Msa0077940-mRNA-1;_AED=0.01;_eAED=0.01;_QI=256|1|1|1|1|1|2|300|516 |
| chr1_2 | exon | 55101656 | 55102744 | 55101656 | ID=Msa0077940-mRNA-1:exon:17176;Parent=Msa0077940-mRNA-1 |
| chr1_2 | exon | 55103352 | 55104369 | 55103352 | ID=Msa0077940-mRNA-1:exon:17175;Parent=Msa0077940-mRNA-1 |
| chr1_2 | five_prime_UTR | 55104114 | 55104369 | 55104114 | ID=Msa0077940-mRNA-1:five_prime_utr;Parent=Msa0077940-mRNA-1 |
| chr1_2 | CDS | 55103352 | 55104113 | 55103352 | ID=Msa0077940-mRNA-1:cds;Parent=Msa0077940-mRNA-1 |
| chr1_2 | CDS | 55101956 | 55102744 | 55101956 | ID=Msa0077940-mRNA-1:cds;Parent=Msa0077940-mRNA-1 |
| chr1_2 | three_prime_UTR | 55101656 | 55101955 | 55101656 | ID=Msa0077940-mRNA-1:three_prime_utr;Parent=Msa0077940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
