AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0170830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0170830 MtrunA17_Chr1g0188581 99.578 237 1 0 1 237 1 237 9.62e-176 482
Msa0170830 MtrunA17_Chr6g0477471 73.418 237 58 3 1 237 1 232 7.69e-128 360
Msa0170830 MtrunA17_Chr1g0147511 72.996 237 59 2 1 237 1 232 2.77e-126 357
Msa0170830 MtrunA17_Chr3g0139261 75.225 222 53 1 1 222 1 220 1.27e-122 347
Msa0170830 MtrunA17_Chr6g0477661 59.556 225 89 1 1 225 1 223 8.24e-98 285
Msa0170830 MtrunA17_Chr6g0477681 57.991 219 90 1 1 219 1 217 2.60e-92 271
Msa0170830 MtrunA17_Chr5g0428761 38.914 221 128 3 5 219 3 222 1.58e-51 167
Msa0170830 MtrunA17_Chr8g0392461 39.423 208 119 2 8 215 6 206 6.57e-43 145
Msa0170830 MtrunA17_Chr7g0244961 36.493 211 129 1 7 217 43 248 4.89e-34 123
Msa0170830 MtrunA17_Chr8g0392481 45.122 82 45 0 7 88 6 87 1.65e-19 80.9
Msa0170830 MtrunA17_Chr2g0282971 32.955 176 110 5 40 214 1 169 1.29e-18 80.9
Msa0170830 MtrunA17_Chr8g0392471 35.366 164 90 4 56 215 98 249 6.74e-18 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0170830 AT4G31330.1 70.909 220 60 2 1 216 1 220 1.99e-111 320
Msa0170830 AT5G10580.1 63.934 244 80 2 1 236 1 244 2.13e-109 315
Msa0170830 AT5G10580.4 63.934 244 80 2 1 236 1 244 2.13e-109 315
Msa0170830 AT5G10580.3 63.223 242 83 1 1 236 1 242 3.03e-108 312
Msa0170830 AT5G24790.1 58.369 233 94 1 1 230 1 233 7.09e-89 263
Msa0170830 AT5G10580.2 64.865 185 59 1 1 179 1 185 5.76e-85 251
Msa0170830 AT3G18215.1 39.906 213 126 1 3 215 2 212 3.74e-45 151
Msa0170830 AT5G24600.1 36.036 222 130 3 4 215 2 221 1.02e-44 150
Msa0170830 AT5G24600.2 36.036 222 130 3 4 215 2 221 1.20e-44 150
Msa0170830 AT5G43180.1 31.674 221 138 2 9 216 8 228 6.12e-31 114
Msa0170830 AT5G46060.1 34.742 213 133 2 4 215 6 213 8.71e-22 90.9
Msa0170830 AT3G18215.2 37.324 142 87 1 74 215 1 140 3.42e-20 84.7

Find 54 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTCAATGATTCCATTTA+TGG 0.062471 1_4:+55255473 Msa0170830:CDS
GATTCCAGTGCTTTATAATT+TGG 0.112917 1_4:+55255787 Msa0170830:CDS
GCTAGTACCCTTAGGATTTA+TGG 0.125160 1_4:+55251228 Msa0170830:CDS
CAACCTTCTTCCACCATAAT+TGG 0.152030 1_4:+55251295 Msa0170830:CDS
ATGAGTATTGATTCCAATTA+TGG 0.174514 1_4:-55251308 None:intergenic
TGAATATTTGTCTGAGCTTT+TGG 0.189699 1_4:+55255655 Msa0170830:CDS
TGGAGCTCATAGTGAATTTA+TGG 0.212693 1_4:+55255493 Msa0170830:CDS
TTAGGATTTATGGTAATAAT+TGG 0.234568 1_4:+55251238 Msa0170830:CDS
AACCCTACGTAATCTAATAA+TGG 0.254699 1_4:+55255367 Msa0170830:CDS
TTCACTATGAGCTCCATAAA+TGG 0.279592 1_4:-55255486 None:intergenic
CATCTTGTGGTGTGCAAATA+AGG 0.279736 1_4:-55255607 None:intergenic
GGAATGGAGGAAATACTATT+TGG 0.309810 1_4:+55251198 Msa0170830:CDS
TCTGTCACACATTGTCCATT+AGG 0.321977 1_4:+55255564 Msa0170830:CDS
TAATAATTGGTTATCATGTT+TGG 0.353194 1_4:+55251251 Msa0170830:CDS
CTGGGTACCTTCCATGCTTA+AGG 0.355143 1_4:+55251342 Msa0170830:CDS
ATACTCATGGAAGACGTTCC+TGG 0.365268 1_4:+55251323 Msa0170830:CDS
TTGGTTATCATGTTTGGTTA+TGG 0.368880 1_4:+55251257 Msa0170830:CDS
AATAATGGGATCAACACTTA+TGG 0.371912 1_4:+55255382 Msa0170830:CDS
TCATGTTTGGTTATGGCATA+AGG 0.383324 1_4:+55251264 Msa0170830:CDS
CATTCTACTCTCAGCTGGTT+TGG 0.383869 1_4:+55255415 Msa0170830:CDS
TTGGACTTTGTTTGTGGGAA+TGG 0.387422 1_4:+55255806 Msa0170830:CDS
GATGCTTTGCTAGTACCCTT+AGG 0.394945 1_4:+55251220 Msa0170830:CDS
TATAATTTGGACTTTGTTTG+TGG 0.396446 1_4:+55255800 Msa0170830:CDS
TTGGATCTTTGGACCTGTCT+TGG 0.400498 1_4:+55255742 Msa0170830:CDS
ACCCTACGTAATCTAATAAT+GGG 0.403558 1_4:+55255368 Msa0170830:CDS
CCAAAGATCCAAAGCAAAAG+AGG 0.411193 1_4:-55255731 None:intergenic
AAAAGCTCAGACAAATATTC+AGG 0.422507 1_4:-55255653 None:intergenic
ATAATTTGGACTTTGTTTGT+GGG 0.446470 1_4:+55255801 Msa0170830:CDS
ATGAGAATAAGAATATAGTT+AGG 0.446792 1_4:-55255538 None:intergenic
TTAAATTCATTGAGATGGAA+TGG 0.471173 1_4:+55251182 None:intergenic
AATTATTACCATAAATCCTA+AGG 0.478787 1_4:-55251236 None:intergenic
ATTCCAATTATGGTGGAAGA+AGG 0.483440 1_4:-55251298 None:intergenic
TACTCATGGAAGACGTTCCT+GGG 0.490581 1_4:+55251324 Msa0170830:CDS
TGCAAATAAGGATGCTCACT+TGG 0.496404 1_4:-55255595 None:intergenic
TCCCATTATTAGATTACGTA+GGG 0.517944 1_4:-55255369 None:intergenic
ACATCCATTCTACTCTCAGC+TGG 0.523277 1_4:+55255410 Msa0170830:CDS
AAGTCCAAATTATAAAGCAC+TGG 0.539896 1_4:-55255791 None:intergenic
GAACACAAGAAAACCAAGAC+AGG 0.547850 1_4:-55255755 None:intergenic
ATAATTGGAATCAATACTCA+TGG 0.558823 1_4:+55251310 Msa0170830:CDS
CAAACCAGCTGAGAGTAGAA+TGG 0.570136 1_4:-55255414 None:intergenic
AGTATTGATTCCAATTATGG+TGG 0.573967 1_4:-55251305 None:intergenic
AATTCATTGAGATGGAATGG+AGG 0.581096 1_4:+55251185 None:intergenic
GAGTATACGTACCTTAAGCA+TGG 0.583825 1_4:-55251353 None:intergenic
GTGAAGATTAATGACAAAGG+AGG 0.586414 1_4:+55255842 Msa0170830:CDS
CTTAAGCATGGAAGGTACCC+AGG 0.599311 1_4:-55251341 None:intergenic
CAAAGATCCAAAGCAAAAGA+GGG 0.615516 1_4:-55255730 None:intergenic
ATTATTACCATAAATCCTAA+GGG 0.619458 1_4:-55251235 None:intergenic
ATACGTACCTTAAGCATGGA+AGG 0.638069 1_4:-55251349 None:intergenic
GCATAGGACAAGACATCTTG+TGG 0.640111 1_4:-55255620 None:intergenic
TACGTAGGGTTTGAACTGCT+AGG 0.641086 1_4:-55255355 None:intergenic
CCATAAATGGAATCATTGAG+AGG 0.651845 1_4:-55255473 None:intergenic
ATTGTGAAGATTAATGACAA+AGG 0.655961 1_4:+55255839 Msa0170830:CDS
ATCCCATTATTAGATTACGT+AGG 0.669460 1_4:-55255370 None:intergenic
TTCAGGTGTGATGACAGCAT+AGG 0.682375 1_4:-55255636 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTTATTAATTTTTTT+AGG - chr1_4:55251389-55251408 None:intergenic 0.0%
!!! AATATTATGGTTTTTTTTAA+GGG + chr1_4:55251662-55251681 Msa0170830:intron 10.0%
!!! TTTTTAAATACACAAATAAA+AGG - chr1_4:55252155-55252174 None:intergenic 10.0%
!!! AAAAAATTCTTCTTATTTTT+TGG - chr1_4:55252831-55252850 None:intergenic 10.0%
!!! ATGAATTTTTATATTTTTGA+CGG - chr1_4:55252884-55252903 None:intergenic 10.0%
!! TTAAAATCAATATTATCATA+AGG - chr1_4:55253828-55253847 None:intergenic 10.0%
!! GTTGATATATAAATAAAAAT+AGG - chr1_4:55254800-55254819 None:intergenic 10.0%
!!! GAATATTATGGTTTTTTTTA+AGG + chr1_4:55251661-55251680 Msa0170830:intron 15.0%
!! AATTTACTTAAATTTCTAAC+TGG - chr1_4:55251922-55251941 None:intergenic 15.0%
!!! CGTAAATTTACTTTTTTTAA+GGG - chr1_4:55251987-55252006 None:intergenic 15.0%
!!! ACGTAAATTTACTTTTTTTA+AGG - chr1_4:55251988-55252007 None:intergenic 15.0%
!! AATTTGTATAACTATATTGT+TGG + chr1_4:55252538-55252557 Msa0170830:intron 15.0%
!!! CGAACAATATATTTTTTTTA+AGG - chr1_4:55252571-55252590 None:intergenic 15.0%
!! TCATTTAGATATATCAATTT+AGG + chr1_4:55252622-55252641 Msa0170830:intron 15.0%
!! CATTTAGATATATCAATTTA+GGG + chr1_4:55252623-55252642 Msa0170830:intron 15.0%
!!! GAAAAGTTTGTATATTTTTA+GGG - chr1_4:55252665-55252684 None:intergenic 15.0%
!! ACAAAAATAACTTGAAAATA+GGG - chr1_4:55252756-55252775 None:intergenic 15.0%
!! TACAAAAATAACTTGAAAAT+AGG - chr1_4:55252757-55252776 None:intergenic 15.0%
!! CAATTACAATATAAATTGAT+GGG - chr1_4:55253140-55253159 None:intergenic 15.0%
!! CATCAATTTATATTGTAATT+GGG + chr1_4:55253139-55253158 Msa0170830:intron 15.0%
!! ATCAATTTATATTGTAATTG+GGG + chr1_4:55253140-55253159 Msa0170830:intron 15.0%
!! TATTACTCTTAACTTAAAAA+AGG - chr1_4:55253473-55253492 None:intergenic 15.0%
!!! TTTTTAAGTTAAGAGTAATA+TGG + chr1_4:55253473-55253492 Msa0170830:intron 15.0%
!!! TTTTAAGTTAAGAGTAATAT+GGG + chr1_4:55253474-55253493 Msa0170830:intron 15.0%
!! TATTACTCTTAACTTAAAAA+AGG - chr1_4:55253473-55253492 None:intergenic 15.0%
!!! TTTTTAAGTTAAGAGTAATA+TGG + chr1_4:55253473-55253492 Msa0170830:intron 15.0%
!!! TTTTAAGTTAAGAGTAATAT+GGG + chr1_4:55253474-55253493 Msa0170830:intron 15.0%
!! TCAACAAAAAAAATATTAAG+AGG - chr1_4:55253894-55253913 None:intergenic 15.0%
!! CAAACAAGTATATAAATATT+AGG - chr1_4:55253925-55253944 None:intergenic 15.0%
!! ATCAATTTATAAATCAACTT+AGG - chr1_4:55254596-55254615 None:intergenic 15.0%
!! AAATTGATATCTTAGTAAAA+AGG + chr1_4:55254608-55254627 Msa0170830:intron 15.0%
!! TGTATATGGAATATAAATTT+AGG - chr1_4:55255078-55255097 None:intergenic 15.0%
!! ATTATTACCATAAATCCTAA+GGG - chr1_4:55251238-55251257 None:intergenic 20.0%
!! AATTATTACCATAAATCCTA+AGG - chr1_4:55251239-55251258 None:intergenic 20.0%
!! TTAGGATTTATGGTAATAAT+TGG + chr1_4:55251238-55251257 Msa0170830:CDS 20.0%
!! TAATAATTGGTTATCATGTT+TGG + chr1_4:55251251-55251270 Msa0170830:CDS 20.0%
!! ATAAGATCGTAAAAATCATT+TGG - chr1_4:55251474-55251493 None:intergenic 20.0%
!! TAAAACATGCAAGATTATAT+AGG - chr1_4:55251504-55251523 None:intergenic 20.0%
!! TAAAACATGCAAGATTATAT+AGG - chr1_4:55251504-55251523 None:intergenic 20.0%
!! TATGTACAATTCTAAATGAT+TGG + chr1_4:55251581-55251600 Msa0170830:intron 20.0%
!! CGTATAGATAAATCAAAAAA+GGG - chr1_4:55251832-55251851 None:intergenic 20.0%
!! TCGTATAGATAAATCAAAAA+AGG - chr1_4:55251833-55251852 None:intergenic 20.0%
!! TGTTACAAAATATGATTACT+AGG + chr1_4:55251887-55251906 Msa0170830:intron 20.0%
!!! AAAAGAGAGTAAATTTTTAC+AGG + chr1_4:55251957-55251976 Msa0170830:intron 20.0%
!! AGTTATAAAACAAAGTAATC+AGG - chr1_4:55252018-55252037 None:intergenic 20.0%
!! TATCAAATAACTTCAATAGA+AGG - chr1_4:55252188-55252207 None:intergenic 20.0%
!! ATATAGTTATACAAATTCGA+GGG - chr1_4:55252535-55252554 None:intergenic 20.0%
!! AATATAGTTATACAAATTCG+AGG - chr1_4:55252536-55252555 None:intergenic 20.0%
!! TTTATATTGTCCTTAGTTAA+AGG - chr1_4:55252599-55252618 None:intergenic 20.0%
!!! ATTTAGGGTTAAATATGTTT+TGG + chr1_4:55252638-55252657 Msa0170830:intron 20.0%
!!! CGAAAAGTTTGTATATTTTT+AGG - chr1_4:55252666-55252685 None:intergenic 20.0%
!! AAATTGAAGGAAAAATTTAG+AGG - chr1_4:55252697-55252716 None:intergenic 20.0%
!!! TAGTGATTGAAAATTTTGTA+GGG - chr1_4:55252725-55252744 None:intergenic 20.0%
!!! AAATTTTCAATCACTACTTT+TGG + chr1_4:55252729-55252748 Msa0170830:intron 20.0%
!!! ATATGAGTTTACTTTAAAAG+AGG + chr1_4:55253005-55253024 Msa0170830:intron 20.0%
!!! AAGTTGAAGAAATTTTTTAG+AGG + chr1_4:55253065-55253084 Msa0170830:intron 20.0%
!!! AGTTGAAGAAATTTTTTAGA+GGG + chr1_4:55253066-55253085 Msa0170830:intron 20.0%
!! TGAAAAGTTGACATATTTAT+CGG + chr1_4:55253096-55253115 Msa0170830:intron 20.0%
!! CCAATTACAATATAAATTGA+TGG - chr1_4:55253141-55253160 None:intergenic 20.0%
!! CCATCAATTTATATTGTAAT+TGG + chr1_4:55253138-55253157 Msa0170830:intron 20.0%
!! TCTTAACTTAAAAAAGGTTA+AGG - chr1_4:55253467-55253486 None:intergenic 20.0%
!! TCTTAACTTAAAAAAGGTTA+AGG - chr1_4:55253467-55253486 None:intergenic 20.0%
!! ATCTAACTATCTAAATGATA+AGG - chr1_4:55253702-55253721 None:intergenic 20.0%
!! ACAAGTATATAAATATTAGG+AGG - chr1_4:55253922-55253941 None:intergenic 20.0%
!! TACAATCACTAAATATCTAT+AGG - chr1_4:55255050-55255069 None:intergenic 20.0%
!!! TGATTTTCTCAAATTATTAG+CGG - chr1_4:55255179-55255198 None:intergenic 20.0%
!! ATGAGAATAAGAATATAGTT+AGG - chr1_4:55255541-55255560 None:intergenic 20.0%
!!! ATGAGTATTGATTCCAATTA+TGG - chr1_4:55251311-55251330 None:intergenic 25.0%
! ATAATTGGAATCAATACTCA+TGG + chr1_4:55251310-55251329 Msa0170830:CDS 25.0%
! CATAATATTCCAAGTATGAA+GGG - chr1_4:55251651-55251670 None:intergenic 25.0%
!!! ATTATGGTTTTTTTTAAGGG+TGG + chr1_4:55251665-55251684 Msa0170830:intron 25.0%
!!! TTTTTAAGGGTGGAATATTT+TGG + chr1_4:55251675-55251694 Msa0170830:intron 25.0%
!!! ATGTTTTAGTCATATAGATG+CGG - chr1_4:55251779-55251798 None:intergenic 25.0%
! AAAGGGAAAAAAAATCTTGA+GGG - chr1_4:55251815-55251834 None:intergenic 25.0%
! AAAAGGGAAAAAAAATCTTG+AGG - chr1_4:55251816-55251835 None:intergenic 25.0%
! ATGACGAATATATTCAACAT+CGG - chr1_4:55252067-55252086 None:intergenic 25.0%
! TAGTTATGTAATCCTATAGT+TGG + chr1_4:55252129-55252148 Msa0170830:intron 25.0%
!! GTAGTGATTGAAAATTTTGT+AGG - chr1_4:55252726-55252745 None:intergenic 25.0%
!! TGAAGATGGAAAATTTTTGA+GGG + chr1_4:55253037-55253056 Msa0170830:intron 25.0%
! GAAAAGTTGACATATTTATC+GGG + chr1_4:55253097-55253116 Msa0170830:intron 25.0%
!!! TGATGGGTTAAATATGTTTT+TGG - chr1_4:55253124-55253143 None:intergenic 25.0%
! ACAATTCAATCATGATCAAA+CGG - chr1_4:55253271-55253290 None:intergenic 25.0%
! AAGAAATTTCAATGAGACTA+GGG - chr1_4:55253444-55253463 None:intergenic 25.0%
! AAGAAATTTCAATGAGACTA+GGG - chr1_4:55253444-55253463 None:intergenic 25.0%
!!! TGTTTATTTTCCCTTTGAAT+TGG - chr1_4:55254188-55254207 None:intergenic 25.0%
! ACAAAAAAAATAATCCCACA+TGG + chr1_4:55254309-55254328 Msa0170830:intron 25.0%
! TGAGAGAATCTTTATACAAT+TGG + chr1_4:55254435-55254454 Msa0170830:intron 25.0%
! AGAATCTTTATACAATTGGT+TGG + chr1_4:55254439-55254458 Msa0170830:intron 25.0%
! AAATTCTTTAATGCAAATGC+AGG + chr1_4:55254473-55254492 Msa0170830:intron 25.0%
! AATTCTTTAATGCAAATGCA+GGG + chr1_4:55254474-55254493 Msa0170830:intron 25.0%
! TAAATCCATAGGAAAAAAGT+GGG + chr1_4:55254544-55254563 Msa0170830:intron 25.0%
! GAGATGTTTAAATAATTCCA+AGG + chr1_4:55254707-55254726 Msa0170830:intron 25.0%
! ATCAAGAGATAAATAAAACC+AGG - chr1_4:55254918-55254937 None:intergenic 25.0%
!!! TTATCTGATTTTCAGGTAAA+GGG - chr1_4:55254961-55254980 None:intergenic 25.0%
!!! ATTATCTGATTTTCAGGTAA+AGG - chr1_4:55254962-55254981 None:intergenic 25.0%
!! AACTTGATTATCTGATTTTC+AGG - chr1_4:55254968-55254987 None:intergenic 25.0%
! CAAGTTAAAAGAATAATCAG+AGG + chr1_4:55254982-55255001 Msa0170830:intron 25.0%
!! TATAATTTGGACTTTGTTTG+TGG + chr1_4:55255800-55255819 Msa0170830:CDS 25.0%
!! ATAATTTGGACTTTGTTTGT+GGG + chr1_4:55255801-55255820 Msa0170830:CDS 25.0%
! ATTGTGAAGATTAATGACAA+AGG + chr1_4:55255839-55255858 Msa0170830:CDS 25.0%
TTGGTTATCATGTTTGGTTA+TGG + chr1_4:55251257-55251276 Msa0170830:CDS 30.0%
!! AGTATTGATTCCAATTATGG+TGG - chr1_4:55251308-55251327 None:intergenic 30.0%
AACATGCAAGATTATATAGG+AGG - chr1_4:55251501-55251520 None:intergenic 30.0%
AACATGCAAGATTATATAGG+AGG - chr1_4:55251501-55251520 None:intergenic 30.0%
CCATAATATTCCAAGTATGA+AGG - chr1_4:55251652-55251671 None:intergenic 30.0%
CCTTCATACTTGGAATATTA+TGG + chr1_4:55251649-55251668 Msa0170830:intron 30.0%
CACAGAAAATATCAACTTGT+AGG - chr1_4:55251739-55251758 None:intergenic 30.0%
ACAAATAAAAGGCCAACTAT+AGG - chr1_4:55252144-55252163 None:intergenic 30.0%
!! TGTTTGAGTTTTCGATCATT+TGG - chr1_4:55252464-55252483 None:intergenic 30.0%
TTGTAGGGACTAAAAATTGA+AGG - chr1_4:55252710-55252729 None:intergenic 30.0%
! GTGAAGATGGAAAATTTTTG+AGG + chr1_4:55253036-55253055 Msa0170830:intron 30.0%
CCTATTTCAAGATCAAAACA+GGG - chr1_4:55253200-55253219 None:intergenic 30.0%
TCCTATTTCAAGATCAAAAC+AGG - chr1_4:55253201-55253220 None:intergenic 30.0%
!! TGATTCGAGTTTGGTATTTT+AGG - chr1_4:55253329-55253348 None:intergenic 30.0%
GAAGAAATTTCAATGAGACT+AGG - chr1_4:55253445-55253464 None:intergenic 30.0%
AAGTTAAGAGTAATATGGGA+TGG + chr1_4:55253478-55253497 Msa0170830:intron 30.0%
AGTTAAGAGTAATATGGGAT+GGG + chr1_4:55253479-55253498 Msa0170830:intron 30.0%
AATGAATGTTCGACGATAAT+GGG - chr1_4:55253513-55253532 None:intergenic 30.0%
GAAGAAATTTCAATGAGACT+AGG - chr1_4:55253445-55253464 None:intergenic 30.0%
AAGTTAAGAGTAATATGGGA+TGG + chr1_4:55253478-55253497 Msa0170830:intron 30.0%
AGTTAAGAGTAATATGGGAT+GGG + chr1_4:55253479-55253498 Msa0170830:intron 30.0%
GAAGTCAAAAACTCTCATTA+CGG - chr1_4:55253762-55253781 None:intergenic 30.0%
!!! GAGAGTTTTTGACTTCTAAT+AGG + chr1_4:55253766-55253785 Msa0170830:intron 30.0%
!! AGGCTTCTGGTTTAATTATT+TGG + chr1_4:55253987-55254006 Msa0170830:intron 30.0%
TCGATAGATATGAAGTGATT+CGG - chr1_4:55254056-55254075 None:intergenic 30.0%
! TTATTTTCCCTTTGAATTGG+TGG - chr1_4:55254185-55254204 None:intergenic 30.0%
!! GTTGATTCTGGAGTAATTTA+AGG - chr1_4:55254232-55254251 None:intergenic 30.0%
!! ATTTTCAACACAGTTGATTC+TGG - chr1_4:55254244-55254263 None:intergenic 30.0%
AAGATATTGCTCTAGCTAAA+TGG + chr1_4:55254332-55254351 Msa0170830:intron 30.0%
! TTTATACAATTGGTTGGTGT+AGG + chr1_4:55254445-55254464 Msa0170830:intron 30.0%
! CACTTTTATGAGAAAGTGAT+GGG - chr1_4:55254518-55254537 None:intergenic 30.0%
CATCACTTTCTCATAAAAGT+GGG + chr1_4:55254517-55254536 Msa0170830:intron 30.0%
GTAAATCCATAGGAAAAAAG+TGG + chr1_4:55254543-55254562 Msa0170830:intron 30.0%
ATGTGTCATATTCATGTTTC+TGG + chr1_4:55254633-55254652 Msa0170830:intron 30.0%
AATGTAAAGACAAACCATCA+TGG - chr1_4:55254666-55254685 None:intergenic 30.0%
! TGGTTTGTCTTTACATTAAG+TGG + chr1_4:55254669-55254688 Msa0170830:intron 30.0%
AACTATCTAGATCATCTCTT+TGG + chr1_4:55254817-55254836 Msa0170830:intron 30.0%
AACTAATACGATTGTTTACC+TGG + chr1_4:55254897-55254916 Msa0170830:intron 30.0%
! AACTTTGCATGGATTGTATA+TGG - chr1_4:55255092-55255111 None:intergenic 30.0%
AACCCTACGTAATCTAATAA+TGG + chr1_4:55255367-55255386 Msa0170830:CDS 30.0%
ACCCTACGTAATCTAATAAT+GGG + chr1_4:55255368-55255387 Msa0170830:CDS 30.0%
TCCCATTATTAGATTACGTA+GGG - chr1_4:55255372-55255391 None:intergenic 30.0%
ATCCCATTATTAGATTACGT+AGG - chr1_4:55255373-55255392 None:intergenic 30.0%
! AATAATGGGATCAACACTTA+TGG + chr1_4:55255382-55255401 Msa0170830:CDS 30.0%
!! TAGGAGTGTGACATATTTTA+GGG - chr1_4:55255522-55255541 None:intergenic 30.0%
!! TTAGGAGTGTGACATATTTT+AGG - chr1_4:55255523-55255542 None:intergenic 30.0%
AAAAGCTCAGACAAATATTC+AGG - chr1_4:55255656-55255675 None:intergenic 30.0%
! TGAATATTTGTCTGAGCTTT+TGG + chr1_4:55255655-55255674 Msa0170830:CDS 30.0%
GATTCCAGTGCTTTATAATT+TGG + chr1_4:55255787-55255806 Msa0170830:CDS 30.0%
AAGTCCAAATTATAAAGCAC+TGG - chr1_4:55255794-55255813 None:intergenic 30.0%
GGAATGGAGGAAATACTATT+TGG + chr1_4:55251198-55251217 Msa0170830:CDS 35.0%
TCATGTTTGGTTATGGCATA+AGG + chr1_4:55251264-55251283 Msa0170830:CDS 35.0%
! ATTCCAATTATGGTGGAAGA+AGG - chr1_4:55251301-55251320 None:intergenic 35.0%
!!! TCTTGCATGTTTTAGCTACA+AGG + chr1_4:55251556-55251575 Msa0170830:intron 35.0%
! GGCATTGAAAACAAACATGT+TGG - chr1_4:55251718-55251737 None:intergenic 35.0%
AATTGCATGCAAAGATACGA+TGG - chr1_4:55252383-55252402 None:intergenic 35.0%
TGCGTGCGAAAAAATATGTT+TGG - chr1_4:55252418-55252437 None:intergenic 35.0%
ATCACTTGTGTCACACTAAT+TGG + chr1_4:55252487-55252506 Msa0170830:intron 35.0%
GTTCGAAGATCCTTTAACTA+AGG + chr1_4:55252586-55252605 Msa0170830:intron 35.0%
ATTTCAAGATCAAAACAGGG+TGG - chr1_4:55253197-55253216 None:intergenic 35.0%
!!! CCCTGTTTTGATCTTGAAAT+AGG + chr1_4:55253197-55253216 Msa0170830:intron 35.0%
TCTTGAAATAGGATTCACTG+TGG + chr1_4:55253208-55253227 Msa0170830:intron 35.0%
!! AGTCGATATTGATTCGAGTT+TGG - chr1_4:55253338-55253357 None:intergenic 35.0%
!! CTCATGATCATGATTTGTTG+CGG - chr1_4:55253419-55253438 None:intergenic 35.0%
CAATGAATGTTCGACGATAA+TGG - chr1_4:55253514-55253533 None:intergenic 35.0%
!! CTCATGATCATGATTTGTTG+CGG - chr1_4:55253419-55253438 None:intergenic 35.0%
TTGTTTGGGTGTACGATAAT+GGG - chr1_4:55253667-55253686 None:intergenic 35.0%
AAATGATAAGGCAACAGAGA+TGG - chr1_4:55253690-55253709 None:intergenic 35.0%
CTGGATCTATATACAACTCA+CGG - chr1_4:55254151-55254170 None:intergenic 35.0%
TAGAGCAATATCTTCCATGT+GGG - chr1_4:55254326-55254345 None:intergenic 35.0%
! CTCTAGCTAAATGGATTTCA+GGG + chr1_4:55254341-55254360 Msa0170830:intron 35.0%
ATGGTCGATGTTTATCACTT+TGG + chr1_4:55254377-55254396 Msa0170830:intron 35.0%
! CAGGGTCTTTTTGCAAAATA+TGG + chr1_4:55254492-55254511 Msa0170830:intron 35.0%
!! CCACTTTTATGAGAAAGTGA+TGG - chr1_4:55254519-55254538 None:intergenic 35.0%
CCATCACTTTCTCATAAAAG+TGG + chr1_4:55254516-55254535 Msa0170830:intron 35.0%
!! AAGTGGGTTAGTAAATCCAT+AGG + chr1_4:55254533-55254552 Msa0170830:intron 35.0%
TATCTAGATCATCTCTTTGG+TGG + chr1_4:55254820-55254839 Msa0170830:intron 35.0%
TGATGCAACTTGAAGTTATC+TGG + chr1_4:55254934-55254953 Msa0170830:intron 35.0%
TCTCAAATTATTAGCGGTGT+CGG - chr1_4:55255173-55255192 None:intergenic 35.0%
! CACTTCATTTTGTTCATCAC+AGG + chr1_4:55255313-55255332 Msa0170830:intron 35.0%
CCATAAATGGAATCATTGAG+AGG - chr1_4:55255476-55255495 None:intergenic 35.0%
CCTCTCAATGATTCCATTTA+TGG + chr1_4:55255473-55255492 Msa0170830:CDS 35.0%
TTCACTATGAGCTCCATAAA+TGG - chr1_4:55255489-55255508 None:intergenic 35.0%
TGGAGCTCATAGTGAATTTA+TGG + chr1_4:55255493-55255512 Msa0170830:CDS 35.0%
CACTTGGTTGAAAAACCTAA+TGG - chr1_4:55255582-55255601 None:intergenic 35.0%
CAAAGATCCAAAGCAAAAGA+GGG - chr1_4:55255733-55255752 None:intergenic 35.0%
GTGAAGATTAATGACAAAGG+AGG + chr1_4:55255842-55255861 Msa0170830:CDS 35.0%
GCTAGTACCCTTAGGATTTA+TGG + chr1_4:55251228-55251247 Msa0170830:CDS 40.0%
CAACCTTCTTCCACCATAAT+TGG + chr1_4:55251295-55251314 Msa0170830:CDS 40.0%
ATACGTACCTTAAGCATGGA+AGG - chr1_4:55251352-55251371 None:intergenic 40.0%
GAGTATACGTACCTTAAGCA+TGG - chr1_4:55251356-55251375 None:intergenic 40.0%
!! AAAAGAGTGCCCTTCATACT+TGG + chr1_4:55251639-55251658 Msa0170830:intron 40.0%
TATCTTTGCATGCAATTGCG+AGG + chr1_4:55252386-55252405 Msa0170830:intron 40.0%
!!! TTTTTTCGCACGCATTGACT+AGG + chr1_4:55252424-55252443 Msa0170830:intron 40.0%
AGAGGAAGCAAAAGTGAAGA+TGG + chr1_4:55253023-55253042 Msa0170830:intron 40.0%
! ATCTCTGAAGAATGTGAGTG+AGG + chr1_4:55253163-55253182 Msa0170830:intron 40.0%
GTTGTTTGGGTGTACGATAA+TGG - chr1_4:55253668-55253687 None:intergenic 40.0%
CTAGAGCAATATCTTCCATG+TGG - chr1_4:55254327-55254346 None:intergenic 40.0%
! GCTCTAGCTAAATGGATTTC+AGG + chr1_4:55254340-55254359 Msa0170830:intron 40.0%
CATCGACCATACCAAAAGTA+GGG - chr1_4:55254367-55254386 None:intergenic 40.0%
ACATCGACCATACCAAAAGT+AGG - chr1_4:55254368-55254387 None:intergenic 40.0%
!!! GTCAACCCACTTTTTTCCTA+TGG - chr1_4:55254552-55254571 None:intergenic 40.0%
! AGACAAACCATCATGGATTG+TGG - chr1_4:55254659-55254678 None:intergenic 40.0%
ACACGCTCATATATATGCCT+TGG - chr1_4:55254727-55254746 None:intergenic 40.0%
CCATGCAAAGTTATGAAGCA+CGG + chr1_4:55255100-55255119 Msa0170830:intron 40.0%
TATGAAGCATGGACACTCAT+CGG - chr1_4:55255266-55255285 None:intergenic 40.0%
TCCATGCTTCATAGATGCAA+AGG + chr1_4:55255273-55255292 Msa0170830:intron 40.0%
ACCTTTGCATCTATGAAGCA+TGG - chr1_4:55255277-55255296 None:intergenic 40.0%
TCTGTCACACATTGTCCATT+AGG + chr1_4:55255564-55255583 Msa0170830:CDS 40.0%
TGCAAATAAGGATGCTCACT+TGG - chr1_4:55255598-55255617 None:intergenic 40.0%
CATCTTGTGGTGTGCAAATA+AGG - chr1_4:55255610-55255629 None:intergenic 40.0%
! TTGTCTGAGCTTTTGGACAA+AGG + chr1_4:55255662-55255681 Msa0170830:CDS 40.0%
!!! GGAATTGTTTTGAGCACTGT+TGG + chr1_4:55255683-55255702 Msa0170830:CDS 40.0%
CCAAAGATCCAAAGCAAAAG+AGG - chr1_4:55255734-55255753 None:intergenic 40.0%
!! CCTCTTTTGCTTTGGATCTT+TGG + chr1_4:55255731-55255750 Msa0170830:CDS 40.0%
GAACACAAGAAAACCAAGAC+AGG - chr1_4:55255758-55255777 None:intergenic 40.0%
! TTGGACTTTGTTTGTGGGAA+TGG + chr1_4:55255806-55255825 Msa0170830:CDS 40.0%
GATGCTTTGCTAGTACCCTT+AGG + chr1_4:55251220-55251239 Msa0170830:CDS 45.0%
ATACTCATGGAAGACGTTCC+TGG + chr1_4:55251323-55251342 Msa0170830:CDS 45.0%
TACTCATGGAAGACGTTCCT+GGG + chr1_4:55251324-55251343 Msa0170830:CDS 45.0%
ATGTCTTGACTGCGTGAATG+CGG - chr1_4:55253242-55253261 None:intergenic 45.0%
GGCAACAGAGATGGTTGTTT+GGG - chr1_4:55253681-55253700 None:intergenic 45.0%
AGGCAACAGAGATGGTTGTT+TGG - chr1_4:55253682-55253701 None:intergenic 45.0%
AGCCTCGAGAAACACTTGTT+GGG - chr1_4:55253972-55253991 None:intergenic 45.0%
AAGCCTCGAGAAACACTTGT+TGG - chr1_4:55253973-55253992 None:intergenic 45.0%
TGAGCAAGCCACCAATTCAA+AGG + chr1_4:55254174-55254193 Msa0170830:intron 45.0%
GAGCAAGCCACCAATTCAAA+GGG + chr1_4:55254175-55254194 Msa0170830:intron 45.0%
!! GACGTCTGCATTTGTTTTCG+TGG + chr1_4:55254569-55254588 Msa0170830:intron 45.0%
! TTTCTGGCCACAATCCATGA+TGG + chr1_4:55254649-55254668 Msa0170830:intron 45.0%
CCGTGCTTCATAACTTTGCA+TGG - chr1_4:55255103-55255122 None:intergenic 45.0%
TGTTGATGTCGTGTCAGTGT+AGG + chr1_4:55255221-55255240 Msa0170830:intron 45.0%
TACGTAGGGTTTGAACTGCT+AGG - chr1_4:55255358-55255377 None:intergenic 45.0%
ACATCCATTCTACTCTCAGC+TGG + chr1_4:55255410-55255429 Msa0170830:CDS 45.0%
CAAACCAGCTGAGAGTAGAA+TGG - chr1_4:55255417-55255436 None:intergenic 45.0%
CATTCTACTCTCAGCTGGTT+TGG + chr1_4:55255415-55255434 Msa0170830:CDS 45.0%
GCATAGGACAAGACATCTTG+TGG - chr1_4:55255623-55255642 None:intergenic 45.0%
TTCAGGTGTGATGACAGCAT+AGG - chr1_4:55255639-55255658 None:intergenic 45.0%
! CAGCATTCCCTCTTTTGCTT+TGG + chr1_4:55255723-55255742 Msa0170830:CDS 45.0%
TTGGATCTTTGGACCTGTCT+TGG + chr1_4:55255742-55255761 Msa0170830:CDS 45.0%
!!! TTAAAAAATTCAATTTTTTT+TGG + chr1_4:55252921-55252940 Msa0170830:intron 5.0%
!! AAATAATAATTTATTTGATT+TGG + chr1_4:55254024-55254043 Msa0170830:intron 5.0%
!!! ATAATTAAGTATATAATTTT+TGG - chr1_4:55254109-55254128 None:intergenic 5.0%
!! CTTAAGCATGGAAGGTACCC+AGG - chr1_4:55251344-55251363 None:intergenic 50.0%
CTGGGTACCTTCCATGCTTA+AGG + chr1_4:55251342-55251361 Msa0170830:CDS 50.0%
ACCCCAACAAGTGTTTCTCG+AGG + chr1_4:55253967-55253986 Msa0170830:intron 50.0%
! GCCTCGAGAAACACTTGTTG+GGG - chr1_4:55253971-55253990 None:intergenic 50.0%
CAAGTGTTTCTCGAGGCTTC+TGG + chr1_4:55253974-55253993 Msa0170830:intron 50.0%
!! ATTGGTGGCTTGCTCATGAC+TGG - chr1_4:55254170-55254189 None:intergenic 50.0%
! GGATTTCAGGGCCCTACTTT+TGG + chr1_4:55254353-55254372 Msa0170830:intron 50.0%
!! TCAGGGCCCTACTTTTGGTA+TGG + chr1_4:55254358-55254377 Msa0170830:intron 50.0%
TCGTGTCAGTGTAGGATACC+AGG + chr1_4:55255229-55255248 Msa0170830:intron 50.0%
CACGGACATAGACACCGACA+CGG + chr1_4:55255118-55255137 Msa0170830:intron 55.0%
CACCGACACCGAATACGACA+CGG + chr1_4:55255142-55255161 Msa0170830:intron 55.0%
!! GTCCGTGTCGTATTCGGTGT+CGG - chr1_4:55255147-55255166 None:intergenic 55.0%
GTAGGATACCAGGACATGCC+TGG + chr1_4:55255239-55255258 Msa0170830:intron 55.0%
!! TTCGGTGTCGGTGTCCGTGT+CGG - chr1_4:55255135-55255154 None:intergenic 60.0%
TCATCGGACCAGGCATGTCC+TGG - chr1_4:55255250-55255269 None:intergenic 60.0%
GCATGGACACTCATCGGACC+AGG - chr1_4:55255260-55255279 None:intergenic 60.0%
CGGCGCGTCCGTGTCGTATT+CGG - chr1_4:55255153-55255172 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 55251196 55255880 55251196 ID=Msa0170830;Name=Msa0170830
chr1_4 mRNA 55251196 55255880 55251196 ID=Msa0170830-mRNA-1;Parent=Msa0170830;Name=Msa0170830-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0|0|1|1|1|2|0|237
chr1_4 exon 55251196 55251363 55251196 ID=Msa0170830-mRNA-1:exon:16484;Parent=Msa0170830-mRNA-1
chr1_4 exon 55255335 55255880 55255335 ID=Msa0170830-mRNA-1:exon:16485;Parent=Msa0170830-mRNA-1
chr1_4 CDS 55251196 55251363 55251196 ID=Msa0170830-mRNA-1:cds;Parent=Msa0170830-mRNA-1
chr1_4 CDS 55255335 55255880 55255335 ID=Msa0170830-mRNA-1:cds;Parent=Msa0170830-mRNA-1
Gene Sequence

>Msa0170830

ATGGAATGGAGGAAATACTATTTGGATGCTTTGCTAGTACCCTTAGGATTTATGGTAATAATTGGTTATCATGTTTGGTTATGGCATAAGGTTCGAACTCAACCTTCTTCCACCATAATTGGAATCAATACTCATGGAAGACGTTCCTGGGTACCTTCCATGCTTAAGGACATTGAAAAGAAGAACATCCTAGCAGTTCAAACCCTACGTAATCTAATAATGGGATCAACACTTATGGCAACTACATCCATTCTACTCTCAGCTGGTTTGGCAGCAGTCATAAGCAGCACATACAGTGTGAAGAAGCCTCTCAATGATTCCATTTATGGAGCTCATAGTGAATTTATGGTAGCCCTAAAATATGTCACACTCCTAACTATATTCTTATTCTCATTTTTCTGTCACACATTGTCCATTAGGTTTTTCAACCAAGTGAGCATCCTTATTTGCACACCACAAGATGTCTTGTCCTATGCTGTCATCACACCTGAATATTTGTCTGAGCTTTTGGACAAAGGAATTGTTTTGAGCACTGTTGGAAATAGACTTTTCTATTCAGCATTCCCTCTTTTGCTTTGGATCTTTGGACCTGTCTTGGTTTTCTTGTGTTCTGTTGCTATGATTCCAGTGCTTTATAATTTGGACTTTGTTTGTGGGAATGGAAAGCAACATATTGTGAAGATTAATGACAAAGGAGGAGACAATTATGTTTGA

Protein sequence

>Msa0170830

MEWRKYYLDALLVPLGFMVIIGYHVWLWHKVRTQPSSTIIGINTHGRRSWVPSMLKDIEKKNILAVQTLRNLIMGSTLMATTSILLSAGLAAVISSTYSVKKPLNDSIYGAHSEFMVALKYVTLLTIFLFSFFCHTLSIRFFNQVSILICTPQDVLSYAVITPEYLSELLDKGIVLSTVGNRLFYSAFPLLLWIFGPVLVFLCSVAMIPVLYNLDFVCGNGKQHIVKINDKGGDNYV*