Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030880 | Msa0078310 | 0.896791 | 2.628057e-76 | -8.615850e-47 |
| Msa0030880 | Msa0170830 | 0.939803 | 6.870490e-100 | -8.615850e-47 |
| Msa0030880 | Msa0425810 | -0.805428 | 1.341333e-49 | -8.615850e-47 |
| Msa0030880 | Msa0472270 | -0.806665 | 7.367537e-50 | -8.615850e-47 |
| Msa0030880 | Msa0472570 | -0.815848 | 7.490743e-52 | -8.615850e-47 |
| Msa0030880 | Msa1019230 | 0.807932 | 3.968789e-50 | -8.615850e-47 |
| Msa0030880 | Msa1377230 | 0.807463 | 4.993143e-50 | -8.615850e-47 |
| Msa0030880 | Msa1411830 | -0.806808 | 6.870564e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030880 | MtrunA17_Chr1g0188581 | 99.578 | 237 | 1 | 0 | 1 | 237 | 1 | 237 | 2.05e-175 | 481 |
| Msa0030880 | MtrunA17_Chr6g0477471 | 72.996 | 237 | 59 | 3 | 1 | 237 | 1 | 232 | 2.48e-126 | 357 |
| Msa0030880 | MtrunA17_Chr1g0147511 | 72.574 | 237 | 60 | 2 | 1 | 237 | 1 | 232 | 7.01e-125 | 353 |
| Msa0030880 | MtrunA17_Chr3g0139261 | 74.775 | 222 | 54 | 1 | 1 | 222 | 1 | 220 | 4.66e-121 | 343 |
| Msa0030880 | MtrunA17_Chr6g0477661 | 59.556 | 225 | 89 | 1 | 1 | 225 | 1 | 223 | 2.24e-98 | 286 |
| Msa0030880 | MtrunA17_Chr6g0477681 | 57.991 | 219 | 90 | 1 | 1 | 219 | 1 | 217 | 4.62e-93 | 273 |
| Msa0030880 | MtrunA17_Chr5g0428761 | 38.914 | 221 | 128 | 3 | 5 | 219 | 3 | 222 | 3.75e-51 | 167 |
| Msa0030880 | MtrunA17_Chr8g0392461 | 39.904 | 208 | 118 | 2 | 8 | 215 | 6 | 206 | 5.70e-44 | 147 |
| Msa0030880 | MtrunA17_Chr7g0244961 | 36.493 | 211 | 129 | 1 | 7 | 217 | 43 | 248 | 5.40e-35 | 125 |
| Msa0030880 | MtrunA17_Chr8g0392481 | 45.122 | 82 | 45 | 0 | 7 | 88 | 6 | 87 | 2.99e-20 | 82.8 |
| Msa0030880 | MtrunA17_Chr2g0282971 | 32.955 | 176 | 110 | 5 | 40 | 214 | 1 | 169 | 1.39e-18 | 80.9 |
| Msa0030880 | MtrunA17_Chr8g0392471 | 35.366 | 164 | 90 | 4 | 56 | 215 | 98 | 249 | 6.81e-18 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030880 | AT4G31330.1 | 70.909 | 220 | 60 | 2 | 1 | 216 | 1 | 220 | 4.83e-111 | 319 |
| Msa0030880 | AT5G10580.1 | 63.525 | 244 | 81 | 2 | 1 | 236 | 1 | 244 | 7.39e-108 | 311 |
| Msa0030880 | AT5G10580.4 | 63.525 | 244 | 81 | 2 | 1 | 236 | 1 | 244 | 7.39e-108 | 311 |
| Msa0030880 | AT5G10580.3 | 62.810 | 242 | 84 | 1 | 1 | 236 | 1 | 242 | 9.72e-107 | 308 |
| Msa0030880 | AT5G24790.1 | 58.369 | 233 | 94 | 1 | 1 | 230 | 1 | 233 | 4.84e-89 | 263 |
| Msa0030880 | AT5G10580.2 | 64.324 | 185 | 60 | 1 | 1 | 179 | 1 | 185 | 1.95e-83 | 247 |
| Msa0030880 | AT5G24600.2 | 36.486 | 222 | 129 | 2 | 4 | 215 | 2 | 221 | 4.27e-45 | 151 |
| Msa0030880 | AT5G24600.1 | 36.036 | 222 | 130 | 3 | 4 | 215 | 2 | 221 | 4.45e-45 | 151 |
| Msa0030880 | AT3G18215.1 | 39.906 | 213 | 126 | 1 | 3 | 215 | 2 | 212 | 8.94e-45 | 150 |
| Msa0030880 | AT5G43180.1 | 31.222 | 221 | 139 | 2 | 9 | 216 | 8 | 228 | 2.11e-29 | 110 |
| Msa0030880 | AT5G46060.1 | 34.742 | 213 | 133 | 2 | 4 | 215 | 6 | 213 | 2.10e-21 | 89.7 |
| Msa0030880 | AT3G18215.2 | 37.324 | 142 | 87 | 1 | 74 | 215 | 1 | 140 | 3.57e-20 | 84.7 |
Find 53 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTCAATGATTCCATTTA+TGG | 0.062471 | 1_1:+57383431 | Msa0030880:CDS |
| GATTCCAGTGCTTTATAATT+TGG | 0.112917 | 1_1:+57383745 | Msa0030880:CDS |
| GCTAGTACCCTTAGGATTTA+TGG | 0.125160 | 1_1:+57380095 | Msa0030880:CDS |
| CAACCTTCTTCCACCATAAT+TGG | 0.152030 | 1_1:+57380162 | Msa0030880:CDS |
| ATGAGTATTGATTCCAATTA+TGG | 0.174514 | 1_1:-57380175 | None:intergenic |
| TGAATATTTGTCTGAGCTTT+TGG | 0.189699 | 1_1:+57383613 | Msa0030880:CDS |
| TGGAGCTCATAGTGAATTTA+TGG | 0.212693 | 1_1:+57383451 | Msa0030880:CDS |
| GGAATGGAGGAAATATTATT+TGG | 0.236173 | 1_1:+57380065 | Msa0030880:CDS |
| AACCCTACGTAATCTAATAA+TGG | 0.254699 | 1_1:+57383325 | Msa0030880:CDS |
| TTCACTATGAGCTCCATAAA+TGG | 0.279592 | 1_1:-57383444 | None:intergenic |
| CATCTTGTGGTGTGCAAATA+AGG | 0.279736 | 1_1:-57383565 | None:intergenic |
| TCTGTCACACATTGTCCATT+AGG | 0.321977 | 1_1:+57383522 | Msa0030880:CDS |
| TTATTTATCATGTTTGGTTA+TGG | 0.322182 | 1_1:+57380124 | Msa0030880:CDS |
| TAATAATTATTTATCATGTT+TGG | 0.349604 | 1_1:+57380118 | Msa0030880:CDS |
| TCATGTTTGGTTATGGCATA+AGG | 0.361370 | 1_1:+57380131 | Msa0030880:CDS |
| AATAATGGGATCAACACTTA+TGG | 0.371912 | 1_1:+57383340 | Msa0030880:CDS |
| CATTCTACTCTCAGCTGGTT+TGG | 0.383869 | 1_1:+57383373 | Msa0030880:CDS |
| TTGGACTTTGTTTGTGGGAA+TGG | 0.387422 | 1_1:+57383764 | Msa0030880:CDS |
| GATGCTTTGCTAGTACCCTT+AGG | 0.394945 | 1_1:+57380087 | Msa0030880:CDS |
| ATACTCATGGAAGACGTTCT+TGG | 0.396125 | 1_1:+57380190 | Msa0030880:CDS |
| TATAATTTGGACTTTGTTTG+TGG | 0.396446 | 1_1:+57383758 | Msa0030880:CDS |
| TTGGATCTTTGGACCTGTCT+TGG | 0.400498 | 1_1:+57383700 | Msa0030880:CDS |
| ACCCTACGTAATCTAATAAT+GGG | 0.403558 | 1_1:+57383326 | Msa0030880:CDS |
| CCAAAGATCCAAAGCAAAAG+AGG | 0.411193 | 1_1:-57383689 | None:intergenic |
| AAAAGCTCAGACAAATATTC+AGG | 0.422507 | 1_1:-57383611 | None:intergenic |
| TACTCATGGAAGACGTTCTT+GGG | 0.430259 | 1_1:+57380191 | Msa0030880:CDS |
| ATAATTTGGACTTTGTTTGT+GGG | 0.446470 | 1_1:+57383759 | Msa0030880:CDS |
| ATGAGAATAAGAATATAGTT+AGG | 0.446792 | 1_1:-57383496 | None:intergenic |
| AATTATTACCATAAATCCTA+AGG | 0.460180 | 1_1:-57380103 | None:intergenic |
| TTAAATTCATTGAGATGGAA+TGG | 0.471173 | 1_1:+57380049 | None:intergenic |
| ATTCCAATTATGGTGGAAGA+AGG | 0.483440 | 1_1:-57380165 | None:intergenic |
| TGCAAATAAGGATGCTCACT+TGG | 0.496404 | 1_1:-57383553 | None:intergenic |
| TTGGGTCCCTTCCATGCTCA+AGG | 0.503669 | 1_1:+57380209 | Msa0030880:CDS |
| TCCCATTATTAGATTACGTA+GGG | 0.517944 | 1_1:-57383327 | None:intergenic |
| ACATCCATTCTACTCTCAGC+TGG | 0.523277 | 1_1:+57383368 | Msa0030880:CDS |
| AAGTCCAAATTATAAAGCAC+TGG | 0.539896 | 1_1:-57383749 | None:intergenic |
| GAACACAAGAAAACCAAGAC+AGG | 0.547850 | 1_1:-57383713 | None:intergenic |
| ATAATTGGAATCAATACTCA+TGG | 0.558823 | 1_1:+57380177 | Msa0030880:CDS |
| CAAACCAGCTGAGAGTAGAA+TGG | 0.570136 | 1_1:-57383372 | None:intergenic |
| AGTATTGATTCCAATTATGG+TGG | 0.573967 | 1_1:-57380172 | None:intergenic |
| ATACGTACCTTGAGCATGGA+AGG | 0.578376 | 1_1:-57380216 | None:intergenic |
| AATTCATTGAGATGGAATGG+AGG | 0.581096 | 1_1:+57380052 | None:intergenic |
| GTGAAGATTAATGACAAAGG+AGG | 0.586414 | 1_1:+57383800 | Msa0030880:CDS |
| TTGTATACGTACCTTGAGCA+TGG | 0.589777 | 1_1:-57380220 | None:intergenic |
| ATTATTACCATAAATCCTAA+GGG | 0.600219 | 1_1:-57380102 | None:intergenic |
| CAAAGATCCAAAGCAAAAGA+GGG | 0.615516 | 1_1:-57383688 | None:intergenic |
| GCATAGGACAAGACATCTTG+TGG | 0.640111 | 1_1:-57383578 | None:intergenic |
| CCATAAATGGAATCATTGAG+AGG | 0.651845 | 1_1:-57383431 | None:intergenic |
| TACGTACCTTGAGCATGGAA+GGG | 0.652973 | 1_1:-57380215 | None:intergenic |
| ATTGTGAAGATTAATGACAA+AGG | 0.655961 | 1_1:+57383797 | Msa0030880:CDS |
| TACGTAGGGTTTGAACAGCT+AGG | 0.661798 | 1_1:-57383313 | None:intergenic |
| ATCCCATTATTAGATTACGT+AGG | 0.669460 | 1_1:-57383328 | None:intergenic |
| TTCAGGTGTGATGACAGCAT+AGG | 0.682375 | 1_1:-57383594 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATTATTTATCATGTT+TGG | + | chr1_1:57380118-57380137 | Msa0030880:CDS | 10.0% |
| !! | ATATATATATATATATATGC+GGG | + | chr1_1:57380486-57380505 | Msa0030880:intron | 10.0% |
| !! | AAGAAAACAATATATTTATT+TGG | + | chr1_1:57381966-57381985 | Msa0030880:intron | 10.0% |
| !!! | GATTATTTATTTATTTTTTG+AGG | - | chr1_1:57382244-57382263 | None:intergenic | 10.0% |
| !! | ATTAAGAAATAAATAAAAAC+AGG | - | chr1_1:57382900-57382919 | None:intergenic | 10.0% |
| !! | TATATATATATATATATGCG+GGG | + | chr1_1:57380487-57380506 | Msa0030880:intron | 15.0% |
| !! | TATTGTATATATATCAAACA+AGG | - | chr1_1:57380945-57380964 | None:intergenic | 15.0% |
| !! | ATTACTCAATAAAAAGAATT+TGG | + | chr1_1:57381314-57381333 | Msa0030880:intron | 15.0% |
| !!! | TTTTTTTTATACTCAAGTAA+TGG | + | chr1_1:57381359-57381378 | Msa0030880:intron | 15.0% |
| !! | TATTGTTAGTTATGTTAATA+TGG | + | chr1_1:57381699-57381718 | Msa0030880:intron | 15.0% |
| !! | ATCAATTTATAAATCAACTT+AGG | - | chr1_1:57382573-57382592 | None:intergenic | 15.0% |
| !! | AAATAAAAACAGGTAAATAA+TGG | - | chr1_1:57382890-57382909 | None:intergenic | 15.0% |
| !! | TCTATATGGAATATAAATTT+AGG | - | chr1_1:57383042-57383061 | None:intergenic | 15.0% |
| !!! | TGATTTTCTCAAATTATTAA+CGG | - | chr1_1:57383137-57383156 | None:intergenic | 15.0% |
| !! | ATTATTACCATAAATCCTAA+GGG | - | chr1_1:57380105-57380124 | None:intergenic | 20.0% |
| !! | AATTATTACCATAAATCCTA+AGG | - | chr1_1:57380106-57380125 | None:intergenic | 20.0% |
| !! | TTATTTATCATGTTTGGTTA+TGG | + | chr1_1:57380124-57380143 | Msa0030880:CDS | 20.0% |
| !!! | CGTGTGAAAAAATATATTTT+TGG | - | chr1_1:57380260-57380279 | None:intergenic | 20.0% |
| !! | TTTATATTGTCCTTAGTTAA+AGG | - | chr1_1:57380413-57380432 | None:intergenic | 20.0% |
| !! | TTCATTTGTATATTATGGTA+AGG | - | chr1_1:57380766-57380785 | None:intergenic | 20.0% |
| !! | TCTCTTTCATTTGTATATTA+TGG | - | chr1_1:57380771-57380790 | None:intergenic | 20.0% |
| !!! | TTTTCGTAATAAATACAAAG+TGG | + | chr1_1:57380843-57380862 | Msa0030880:intron | 20.0% |
| !!! | TATCATAAAAAGTACTCATT+CGG | + | chr1_1:57380904-57380923 | Msa0030880:intron | 20.0% |
| !! | TTGTCTTTACATATATTAGT+AGG | - | chr1_1:57380996-57381015 | None:intergenic | 20.0% |
| !! | AATAATCACTCATTATAAGA+TGG | + | chr1_1:57381237-57381256 | Msa0030880:intron | 20.0% |
| !! | TCTATTAGATAGTAAGTAAT+TGG | + | chr1_1:57381286-57381305 | Msa0030880:intron | 20.0% |
| !!! | TGATTTGAGTTCAATATTTT+AGG | - | chr1_1:57381545-57381564 | None:intergenic | 20.0% |
| !! | TAAAATATTGAACTCAAATC+AGG | + | chr1_1:57381544-57381563 | Msa0030880:intron | 20.0% |
| !!! | TGATTTTGACCAATTAAAAA+GGG | - | chr1_1:57381678-57381697 | None:intergenic | 20.0% |
| !!! | TTGATTTTGACCAATTAAAA+AGG | - | chr1_1:57381679-57381698 | None:intergenic | 20.0% |
| !! | TTAGTTATGTTAATATGGAA+TGG | + | chr1_1:57381704-57381723 | Msa0030880:intron | 20.0% |
| !! | TAGTTATGTTAATATGGAAT+GGG | + | chr1_1:57381705-57381724 | Msa0030880:intron | 20.0% |
| !! | TGGAGTAATTTAACTATTTA+AGG | - | chr1_1:57382163-57382182 | None:intergenic | 20.0% |
| !! | TTAGAGAATCTTTATACAAT+TGG | + | chr1_1:57382407-57382426 | Msa0030880:intron | 20.0% |
| !! | TAATGTAACTTGAAGTTATT+AGG | + | chr1_1:57382916-57382935 | Msa0030880:intron | 20.0% |
| !! | ATGAGAATAAGAATATAGTT+AGG | - | chr1_1:57383499-57383518 | None:intergenic | 20.0% |
| !!! | ATGAGTATTGATTCCAATTA+TGG | - | chr1_1:57380178-57380197 | None:intergenic | 25.0% |
| ! | ATAATTGGAATCAATACTCA+TGG | + | chr1_1:57380177-57380196 | Msa0030880:CDS | 25.0% |
| !!! | TGTTTAAGTTTTCGATCATT+TGG | - | chr1_1:57380308-57380327 | None:intergenic | 25.0% |
| ! | ACCACTTATGTTACATTAAT+TGG | + | chr1_1:57380331-57380350 | Msa0030880:intron | 25.0% |
| ! | ACCAATTAATGTAACATAAG+TGG | - | chr1_1:57380335-57380354 | None:intergenic | 25.0% |
| !! | TTTTTATACTCAAGTAATGG+CGG | + | chr1_1:57381362-57381381 | Msa0030880:intron | 25.0% |
| !!! | CATTCTAGTTCTAGTATATA+TGG | - | chr1_1:57381411-57381430 | None:intergenic | 25.0% |
| ! | AAGAAATTTCAATCAGACTA+GGG | - | chr1_1:57381649-57381668 | None:intergenic | 25.0% |
| ! | ATAAATGCATCTAAGTGATA+AGG | - | chr1_1:57381778-57381797 | None:intergenic | 25.0% |
| ! | AACGTTCAAAAAATGTCTAT+TGG | - | chr1_1:57381859-57381878 | None:intergenic | 25.0% |
| !!! | AGACATTTTTTGAACGTTAT+TGG | + | chr1_1:57381861-57381880 | Msa0030880:intron | 25.0% |
| !!! | TGTTTATTTTCCCTTTGAAT+TGG | - | chr1_1:57382119-57382138 | None:intergenic | 25.0% |
| ! | AAACAAAAAATAATCCCACA+TGG | + | chr1_1:57382280-57382299 | Msa0030880:intron | 25.0% |
| ! | ATGATCGATGTTTATCAATT+TGG | + | chr1_1:57382349-57382368 | Msa0030880:intron | 25.0% |
| ! | AGAATCTTTATACAATTGGT+TGG | + | chr1_1:57382411-57382430 | Msa0030880:intron | 25.0% |
| ! | AAATTCTTTAATGCAAATGC+AGG | + | chr1_1:57382449-57382468 | Msa0030880:intron | 25.0% |
| ! | TTTGTCTTTACACATTAAGT+GGG | + | chr1_1:57382649-57382668 | Msa0030880:intron | 25.0% |
| ! | ATAATCTCTTTCGCATATAA+TGG | - | chr1_1:57382974-57382993 | None:intergenic | 25.0% |
| ! | ACTATCTGATAGATATTTAG+TGG | + | chr1_1:57383006-57383025 | Msa0030880:intron | 25.0% |
| !! | TATAATTTGGACTTTGTTTG+TGG | + | chr1_1:57383758-57383777 | Msa0030880:CDS | 25.0% |
| !! | ATAATTTGGACTTTGTTTGT+GGG | + | chr1_1:57383759-57383778 | Msa0030880:CDS | 25.0% |
| ! | ATTGTGAAGATTAATGACAA+AGG | + | chr1_1:57383797-57383816 | Msa0030880:CDS | 25.0% |
| GGAATGGAGGAAATATTATT+TGG | + | chr1_1:57380065-57380084 | Msa0030880:CDS | 30.0% | |
| !! | AGTATTGATTCCAATTATGG+TGG | - | chr1_1:57380175-57380194 | None:intergenic | 30.0% |
| AACTACAACGAATCCTATTT+CGG | - | chr1_1:57380562-57380581 | None:intergenic | 30.0% | |
| TATCTTGACTGCATGAATAT+GGG | - | chr1_1:57380593-57380612 | None:intergenic | 30.0% | |
| ! | AGCCAGAAATTTTAGATTGT+GGG | + | chr1_1:57380638-57380657 | Msa0030880:intron | 30.0% |
| !!! | TGCACGTAGTTTTTTTTTGT+TGG | - | chr1_1:57380704-57380723 | None:intergenic | 30.0% |
| ACAAAAAAAAACTACGTGCA+TGG | + | chr1_1:57380704-57380723 | Msa0030880:intron | 30.0% | |
| GTATATATATCAAACAAGGC+CGG | - | chr1_1:57380941-57380960 | None:intergenic | 30.0% | |
| GACAAATGTTTGCATATAAG+AGG | + | chr1_1:57381011-57381030 | Msa0030880:intron | 30.0% | |
| AAAATGTCTAGTCTAGTTGA+AGG | - | chr1_1:57381150-57381169 | None:intergenic | 30.0% | |
| GAAGAAATTTCAATCAGACT+AGG | - | chr1_1:57381650-57381669 | None:intergenic | 30.0% | |
| ! | CTTCCTTAACCCTTTTTAAT+TGG | + | chr1_1:57381666-57381685 | Msa0030880:intron | 30.0% |
| TGACCAATTAAAAAGGGTTA+AGG | - | chr1_1:57381672-57381691 | None:intergenic | 30.0% | |
| GAAGTCAAAAACTCTCATTA+CGG | - | chr1_1:57381830-57381849 | None:intergenic | 30.0% | |
| TCGACATATATGAAGTGATT+CGG | - | chr1_1:57382035-57382054 | None:intergenic | 30.0% | |
| CTGGATCTATATATAACTCA+CGG | - | chr1_1:57382082-57382101 | None:intergenic | 30.0% | |
| ! | TTATTTTCCCTTTGAATTGG+TGG | - | chr1_1:57382116-57382135 | None:intergenic | 30.0% |
| ! | TGCACTTTTCATTTTCAACA+CGG | - | chr1_1:57382193-57382212 | None:intergenic | 30.0% |
| AAGATATTGCTCTAGCTAAA+TGG | + | chr1_1:57382303-57382322 | Msa0030880:intron | 30.0% | |
| TCTTTATACAATTGGTTGGT+TGG | + | chr1_1:57382415-57382434 | Msa0030880:intron | 30.0% | |
| ! | CAGGTTCTTTTTGCAAAATA+TGG | + | chr1_1:57382468-57382487 | Msa0030880:intron | 30.0% |
| ! | CACTTTTATGAGAAAGTGAT+GGG | - | chr1_1:57382494-57382513 | None:intergenic | 30.0% |
| CATCACTTTCTCATAAAAGT+GGG | + | chr1_1:57382493-57382512 | Msa0030880:intron | 30.0% | |
| ATGTGTCATATTCATGTTTC+TGG | + | chr1_1:57382610-57382629 | Msa0030880:intron | 30.0% | |
| GTTTGTCTTTACACATTAAG+TGG | + | chr1_1:57382648-57382667 | Msa0030880:intron | 30.0% | |
| TTGTCTTTACACATTAAGTG+GGG | + | chr1_1:57382650-57382669 | Msa0030880:intron | 30.0% | |
| GGAATTGTTTAATCAACCTT+TGG | - | chr1_1:57382685-57382704 | None:intergenic | 30.0% | |
| ! | AGGTTGATTAAACAATTCCA+AGG | + | chr1_1:57382686-57382705 | Msa0030880:intron | 30.0% |
| ATCTATCTAGATCATCTCTT+TGG | + | chr1_1:57382799-57382818 | Msa0030880:intron | 30.0% | |
| !!! | ACTATCTGGTTTTTAGGTAA+AGG | - | chr1_1:57382944-57382963 | None:intergenic | 30.0% |
| !!! | TACTTGACTATCTGGTTTTT+AGG | - | chr1_1:57382950-57382969 | None:intergenic | 30.0% |
| ATAATGGTTACTTGACTATC+TGG | - | chr1_1:57382958-57382977 | None:intergenic | 30.0% | |
| AACTTTGCATGCTTTCTATA+TGG | - | chr1_1:57383056-57383075 | None:intergenic | 30.0% | |
| ! | CACTTCATTTTGTTCATTAC+AGG | + | chr1_1:57383271-57383290 | Msa0030880:intron | 30.0% |
| AACCCTACGTAATCTAATAA+TGG | + | chr1_1:57383325-57383344 | Msa0030880:CDS | 30.0% | |
| ACCCTACGTAATCTAATAAT+GGG | + | chr1_1:57383326-57383345 | Msa0030880:CDS | 30.0% | |
| TCCCATTATTAGATTACGTA+GGG | - | chr1_1:57383330-57383349 | None:intergenic | 30.0% | |
| ATCCCATTATTAGATTACGT+AGG | - | chr1_1:57383331-57383350 | None:intergenic | 30.0% | |
| ! | AATAATGGGATCAACACTTA+TGG | + | chr1_1:57383340-57383359 | Msa0030880:CDS | 30.0% |
| !! | TAGGAGTGTGACATATTTTA+GGG | - | chr1_1:57383480-57383499 | None:intergenic | 30.0% |
| !! | TTAGGAGTGTGACATATTTT+AGG | - | chr1_1:57383481-57383500 | None:intergenic | 30.0% |
| AAAAGCTCAGACAAATATTC+AGG | - | chr1_1:57383614-57383633 | None:intergenic | 30.0% | |
| ! | TGAATATTTGTCTGAGCTTT+TGG | + | chr1_1:57383613-57383632 | Msa0030880:CDS | 30.0% |
| GATTCCAGTGCTTTATAATT+TGG | + | chr1_1:57383745-57383764 | Msa0030880:CDS | 30.0% | |
| AAGTCCAAATTATAAAGCAC+TGG | - | chr1_1:57383752-57383771 | None:intergenic | 30.0% | |
| TCATGTTTGGTTATGGCATA+AGG | + | chr1_1:57380131-57380150 | Msa0030880:CDS | 35.0% | |
| ! | ATTCCAATTATGGTGGAAGA+AGG | - | chr1_1:57380168-57380187 | None:intergenic | 35.0% |
| CTCAAGGTACGTATACAATT+GGG | + | chr1_1:57380225-57380244 | Msa0030880:intron | 35.0% | |
| !!! | TTTTTTCACACGCATTGACT+AGG | + | chr1_1:57380268-57380287 | Msa0030880:intron | 35.0% |
| GTTCGAAGATCCTTTAACTA+AGG | + | chr1_1:57380400-57380419 | Msa0030880:intron | 35.0% | |
| ACTACAACGAATCCTATTTC+GGG | - | chr1_1:57380561-57380580 | None:intergenic | 35.0% | |
| ATCTTGACTGCATGAATATG+GGG | - | chr1_1:57380592-57380611 | None:intergenic | 35.0% | |
| GTATCTTGACTGCATGAATA+TGG | - | chr1_1:57380594-57380613 | None:intergenic | 35.0% | |
| ! | GAGCCAGAAATTTTAGATTG+TGG | + | chr1_1:57380637-57380656 | Msa0030880:intron | 35.0% |
| ! | GCCAGAAATTTTAGATTGTG+GGG | + | chr1_1:57380639-57380658 | Msa0030880:intron | 35.0% |
| ! | CCAGAAATTTTAGATTGTGG+GGG | + | chr1_1:57380640-57380659 | Msa0030880:intron | 35.0% |
| TCATTCGGTCCTAAAATTAC+CGG | + | chr1_1:57380919-57380938 | Msa0030880:intron | 35.0% | |
| !!! | TTGGACTAGTTTTGATACGA+TGG | + | chr1_1:57381333-57381352 | Msa0030880:intron | 35.0% |
| !!! | TGGACTAGTTTTGATACGAT+GGG | + | chr1_1:57381334-57381353 | Msa0030880:intron | 35.0% |
| !!! | TGACTACTTTGTTTTGCTGA+CGG | + | chr1_1:57381601-57381620 | Msa0030880:intron | 35.0% |
| TAAGGCAAGAGATATGGTTT+GGG | - | chr1_1:57381760-57381779 | None:intergenic | 35.0% | |
| ATAAGGCAAGAGATATGGTT+TGG | - | chr1_1:57381761-57381780 | None:intergenic | 35.0% | |
| AAGTGATAAGGCAAGAGATA+TGG | - | chr1_1:57381766-57381785 | None:intergenic | 35.0% | |
| !! | ATTTTCAACACGGTTGATTC+TGG | - | chr1_1:57382183-57382202 | None:intergenic | 35.0% |
| TAGAGCAATATCTTCCATGT+GGG | - | chr1_1:57382297-57382316 | None:intergenic | 35.0% | |
| ATCGATCATACCAAAAGTAG+GGG | - | chr1_1:57382338-57382357 | None:intergenic | 35.0% | |
| CATCGATCATACCAAAAGTA+GGG | - | chr1_1:57382339-57382358 | None:intergenic | 35.0% | |
| ACATCGATCATACCAAAAGT+AGG | - | chr1_1:57382340-57382359 | None:intergenic | 35.0% | |
| !! | CCACTTTTATGAGAAAGTGA+TGG | - | chr1_1:57382495-57382514 | None:intergenic | 35.0% |
| CCATCACTTTCTCATAAAAG+TGG | + | chr1_1:57382492-57382511 | Msa0030880:intron | 35.0% | |
| !! | AAGTGGGTTAGTAAATCCAT+AGG | + | chr1_1:57382509-57382528 | Msa0030880:intron | 35.0% |
| !!! | GTCAACACACTTTTTTCCTA+TGG | - | chr1_1:57382528-57382547 | None:intergenic | 35.0% |
| TGTGTAAAGACAAACCATCA+TGG | - | chr1_1:57382643-57382662 | None:intergenic | 35.0% | |
| ACGCTCATATATATATGCCT+TGG | - | chr1_1:57382706-57382725 | None:intergenic | 35.0% | |
| ! | GTGTTTGAGATCAAAGTGTA+TGG | + | chr1_1:57382726-57382745 | Msa0030880:intron | 35.0% |
| TATCTAGATCATCTCTTTGG+TGG | + | chr1_1:57382802-57382821 | Msa0030880:intron | 35.0% | |
| GCATGCAAAGTTATGAAGTA+CGG | + | chr1_1:57383064-57383083 | Msa0030880:intron | 35.0% | |
| AAAGTTATGAAGTACGGACA+CGG | + | chr1_1:57383070-57383089 | Msa0030880:intron | 35.0% | |
| CCATAAATGGAATCATTGAG+AGG | - | chr1_1:57383434-57383453 | None:intergenic | 35.0% | |
| CCTCTCAATGATTCCATTTA+TGG | + | chr1_1:57383431-57383450 | Msa0030880:CDS | 35.0% | |
| TTCACTATGAGCTCCATAAA+TGG | - | chr1_1:57383447-57383466 | None:intergenic | 35.0% | |
| TGGAGCTCATAGTGAATTTA+TGG | + | chr1_1:57383451-57383470 | Msa0030880:CDS | 35.0% | |
| CACTTGGTTGAAAAACCTAA+TGG | - | chr1_1:57383540-57383559 | None:intergenic | 35.0% | |
| CAAAGATCCAAAGCAAAAGA+GGG | - | chr1_1:57383691-57383710 | None:intergenic | 35.0% | |
| GTGAAGATTAATGACAAAGG+AGG | + | chr1_1:57383800-57383819 | Msa0030880:CDS | 35.0% | |
| GCTAGTACCCTTAGGATTTA+TGG | + | chr1_1:57380095-57380114 | Msa0030880:CDS | 40.0% | |
| CAACCTTCTTCCACCATAAT+TGG | + | chr1_1:57380162-57380181 | Msa0030880:CDS | 40.0% | |
| ATACTCATGGAAGACGTTCT+TGG | + | chr1_1:57380190-57380209 | Msa0030880:CDS | 40.0% | |
| TACTCATGGAAGACGTTCTT+GGG | + | chr1_1:57380191-57380210 | Msa0030880:CDS | 40.0% | |
| TTGTATACGTACCTTGAGCA+TGG | - | chr1_1:57380223-57380242 | None:intergenic | 40.0% | |
| GCTCAAGGTACGTATACAAT+TGG | + | chr1_1:57380224-57380243 | Msa0030880:intron | 40.0% | |
| AAGGTACGTATACAATTGGG+AGG | + | chr1_1:57380228-57380247 | Msa0030880:intron | 40.0% | |
| CCTATTTCGGGATCTCAATA+GGG | - | chr1_1:57380549-57380568 | None:intergenic | 40.0% | |
| TCCTATTTCGGGATCTCAAT+AGG | - | chr1_1:57380550-57380569 | None:intergenic | 40.0% | |
| ATAAGTCGTCTGATCAGTAG+CGG | + | chr1_1:57380615-57380634 | Msa0030880:intron | 40.0% | |
| ! | CCCCCACAATCTAAAATTTC+TGG | - | chr1_1:57380643-57380662 | None:intergenic | 40.0% |
| ! | CAAACAAGGCCGGTAATTTT+AGG | - | chr1_1:57380931-57380950 | None:intergenic | 40.0% |
| TTTGATCATGATCAGACGCA+GGG | - | chr1_1:57381483-57381502 | None:intergenic | 40.0% | |
| ATTTGATCATGATCAGACGC+AGG | - | chr1_1:57381484-57381503 | None:intergenic | 40.0% | |
| AAGGCAAGAGATATGGTTTG+GGG | - | chr1_1:57381759-57381778 | None:intergenic | 40.0% | |
| AGCCTCGAGAAACACTTATT+GGG | - | chr1_1:57381927-57381946 | None:intergenic | 40.0% | |
| AAGCCTCGAGAAACACTTAT+TGG | - | chr1_1:57381928-57381947 | None:intergenic | 40.0% | |
| CTAGAGCAATATCTTCCATG+TGG | - | chr1_1:57382298-57382317 | None:intergenic | 40.0% | |
| ! | GCTCTAGCTAAATGGATTTC+AGG | + | chr1_1:57382311-57382330 | Msa0030880:intron | 40.0% |
| TCGATCATACCAAAAGTAGG+GGG | - | chr1_1:57382337-57382356 | None:intergenic | 40.0% | |
| ! | TACAATTGGTTGGTTGGTGT+AGG | + | chr1_1:57382421-57382440 | Msa0030880:intron | 40.0% |
| !!! | ACGTCTGCATTTTGTTTTCG+TGG | + | chr1_1:57382546-57382565 | Msa0030880:intron | 40.0% |
| ! | AGACAAACCATCATGGATTG+TGG | - | chr1_1:57382636-57382655 | None:intergenic | 40.0% |
| ACCTTTGCATCTATGAAGCA+CGG | - | chr1_1:57383235-57383254 | None:intergenic | 40.0% | |
| TCTGTCACACATTGTCCATT+AGG | + | chr1_1:57383522-57383541 | Msa0030880:CDS | 40.0% | |
| TGCAAATAAGGATGCTCACT+TGG | - | chr1_1:57383556-57383575 | None:intergenic | 40.0% | |
| CATCTTGTGGTGTGCAAATA+AGG | - | chr1_1:57383568-57383587 | None:intergenic | 40.0% | |
| ! | TTGTCTGAGCTTTTGGACAA+AGG | + | chr1_1:57383620-57383639 | Msa0030880:CDS | 40.0% |
| !!! | GGAATTGTTTTGAGCACTGT+TGG | + | chr1_1:57383641-57383660 | Msa0030880:CDS | 40.0% |
| CCAAAGATCCAAAGCAAAAG+AGG | - | chr1_1:57383692-57383711 | None:intergenic | 40.0% | |
| !! | CCTCTTTTGCTTTGGATCTT+TGG | + | chr1_1:57383689-57383708 | Msa0030880:CDS | 40.0% |
| GAACACAAGAAAACCAAGAC+AGG | - | chr1_1:57383716-57383735 | None:intergenic | 40.0% | |
| ! | TTGGACTTTGTTTGTGGGAA+TGG | + | chr1_1:57383764-57383783 | Msa0030880:CDS | 40.0% |
| GATGCTTTGCTAGTACCCTT+AGG | + | chr1_1:57380087-57380106 | Msa0030880:CDS | 45.0% | |
| TACGTACCTTGAGCATGGAA+GGG | - | chr1_1:57380218-57380237 | None:intergenic | 45.0% | |
| ATACGTACCTTGAGCATGGA+AGG | - | chr1_1:57380219-57380238 | None:intergenic | 45.0% | |
| CTCTATGAAGAATGCGAGTG+AGG | + | chr1_1:57380512-57380531 | Msa0030880:intron | 45.0% | |
| TTTCGGGATCTCAATAGGGT+GGG | - | chr1_1:57380545-57380564 | None:intergenic | 45.0% | |
| ATTTCGGGATCTCAATAGGG+TGG | - | chr1_1:57380546-57380565 | None:intergenic | 45.0% | |
| CCCTATTGAGATCCCGAAAT+AGG | + | chr1_1:57380546-57380565 | Msa0030880:intron | 45.0% | |
| AAGTAATGGCGGCAGTTAGT+TGG | + | chr1_1:57381373-57381392 | Msa0030880:intron | 45.0% | |
| AGCTACAGCAAGCATTCTGT+GGG | - | chr1_1:57381456-57381475 | None:intergenic | 45.0% | |
| TTGATCATGATCAGACGCAG+GGG | - | chr1_1:57381482-57381501 | None:intergenic | 45.0% | |
| GGGGTGTGGTGTATGATAAT+GGG | - | chr1_1:57381739-57381758 | None:intergenic | 45.0% | |
| ! | AGGCAAGAGATATGGTTTGG+GGG | - | chr1_1:57381758-57381777 | None:intergenic | 45.0% |
| CTCGAGAAACACTTATTGGG+GGG | - | chr1_1:57381924-57381943 | None:intergenic | 45.0% | |
| CCTCGAGAAACACTTATTGG+GGG | - | chr1_1:57381925-57381944 | None:intergenic | 45.0% | |
| GCCTCGAGAAACACTTATTG+GGG | - | chr1_1:57381926-57381945 | None:intergenic | 45.0% | |
| TAAGTGTTTCTCGAGGCTTC+TGG | + | chr1_1:57381929-57381948 | Msa0030880:intron | 45.0% | |
| !! | TTGAATTGGTGGCTTGCTCA+TGG | - | chr1_1:57382105-57382124 | None:intergenic | 45.0% |
| TGAGCAAGCCACCAATTCAA+AGG | + | chr1_1:57382105-57382124 | Msa0030880:intron | 45.0% | |
| GAGCAAGCCACCAATTCAAA+GGG | + | chr1_1:57382106-57382125 | Msa0030880:intron | 45.0% | |
| ! | TTTCTGGCCACAATCCATGA+TGG | + | chr1_1:57382626-57382645 | Msa0030880:intron | 45.0% |
| ! | AGTGGGGAATGCTTTTCCAA+AGG | + | chr1_1:57382666-57382685 | Msa0030880:intron | 45.0% |
| TGTCGTTGTCATGTCAGTGT+AGG | + | chr1_1:57383179-57383198 | Msa0030880:intron | 45.0% | |
| TCCGTGCTTCATAGATGCAA+AGG | + | chr1_1:57383231-57383250 | Msa0030880:intron | 45.0% | |
| TACGTAGGGTTTGAACAGCT+AGG | - | chr1_1:57383316-57383335 | None:intergenic | 45.0% | |
| ACATCCATTCTACTCTCAGC+TGG | + | chr1_1:57383368-57383387 | Msa0030880:CDS | 45.0% | |
| CAAACCAGCTGAGAGTAGAA+TGG | - | chr1_1:57383375-57383394 | None:intergenic | 45.0% | |
| CATTCTACTCTCAGCTGGTT+TGG | + | chr1_1:57383373-57383392 | Msa0030880:CDS | 45.0% | |
| GCATAGGACAAGACATCTTG+TGG | - | chr1_1:57383581-57383600 | None:intergenic | 45.0% | |
| TTCAGGTGTGATGACAGCAT+AGG | - | chr1_1:57383597-57383616 | None:intergenic | 45.0% | |
| ! | CAGCATTCCCTCTTTTGCTT+TGG | + | chr1_1:57383681-57383700 | Msa0030880:CDS | 45.0% |
| TTGGATCTTTGGACCTGTCT+TGG | + | chr1_1:57383700-57383719 | Msa0030880:CDS | 45.0% | |
| !! | TATATATATATATATATATG+CGG | + | chr1_1:57380485-57380504 | Msa0030880:intron | 5.0% |
| !!! | ATTATTTATTTATTTTTTGA+GGG | - | chr1_1:57382243-57382262 | None:intergenic | 5.0% |
| !!! | TTTTAATTGTAAAATTATTT+TGG | + | chr1_1:57382752-57382771 | Msa0030880:intron | 5.0% |
| !! | GATAATATATAAATAAAAAT+AGG | - | chr1_1:57382782-57382801 | None:intergenic | 5.0% |
| TTCGGGATCTCAATAGGGTG+GGG | - | chr1_1:57380544-57380563 | None:intergenic | 50.0% | |
| GAGCTACAGCAAGCATTCTG+TGG | - | chr1_1:57381457-57381476 | None:intergenic | 50.0% | |
| ! | GGGGGTGTGGTGTATGATAA+TGG | - | chr1_1:57381740-57381759 | None:intergenic | 50.0% |
| ! | AGAGATATGGTTTGGGGGTG+TGG | - | chr1_1:57381753-57381772 | None:intergenic | 50.0% |
| CCCCCAATAAGTGTTTCTCG+AGG | + | chr1_1:57381922-57381941 | Msa0030880:intron | 50.0% | |
| ! | GATTTCAGGCCCCCTACTTT+TGG | + | chr1_1:57382325-57382344 | Msa0030880:intron | 50.0% |
| ATGAAGTACGGACACGGACA+CGG | + | chr1_1:57383076-57383095 | Msa0030880:intron | 50.0% | |
| TCATGTCAGTGTAGGACACC+AGG | + | chr1_1:57383187-57383206 | Msa0030880:intron | 50.0% | |
| TATGAAGCACGGACACTCCT+CGG | - | chr1_1:57383224-57383243 | None:intergenic | 50.0% | |
| TTGGGTCCCTTCCATGCTCA+AGG | + | chr1_1:57380209-57380228 | Msa0030880:CDS | 55.0% | |
| ATCATGATCAGACGCAGGGG+CGG | - | chr1_1:57381479-57381498 | None:intergenic | 55.0% | |
| !! | ATTGGTGGCTTGCTCATGGC+TGG | - | chr1_1:57382101-57382120 | None:intergenic | 55.0% |
| ACCAGGACACGCCTGATCCG+AGG | + | chr1_1:57383204-57383223 | Msa0030880:intron | 65.0% | |
| TCCTCGGATCAGGCGTGTCC+TGG | - | chr1_1:57383208-57383227 | None:intergenic | 65.0% | |
| GCACGGACACTCCTCGGATC+AGG | - | chr1_1:57383218-57383237 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 57380063 | 57383838 | 57380063 | ID=Msa0030880;Name=Msa0030880 |
| chr1_1 | mRNA | 57380063 | 57383838 | 57380063 | ID=Msa0030880-mRNA-1;Parent=Msa0030880;Name=Msa0030880-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|237 |
| chr1_1 | exon | 57380063 | 57380230 | 57380063 | ID=Msa0030880-mRNA-1:exon:17279;Parent=Msa0030880-mRNA-1 |
| chr1_1 | exon | 57383293 | 57383838 | 57383293 | ID=Msa0030880-mRNA-1:exon:17280;Parent=Msa0030880-mRNA-1 |
| chr1_1 | CDS | 57380063 | 57380230 | 57380063 | ID=Msa0030880-mRNA-1:cds;Parent=Msa0030880-mRNA-1 |
| chr1_1 | CDS | 57383293 | 57383838 | 57383293 | ID=Msa0030880-mRNA-1:cds;Parent=Msa0030880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
