AlfalfaGEDB | Msa0156060

M. sativa cultivar zhongmu-4 / Msa0156060

KEGG: -
GO: GO:0000822 GO:0003674 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006082 GO:0006793 GO:0006797 GO:0006799 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006950 GO:0007154 GO:0007165 GO:0008144 GO:0008150 GO:0008152 GO:0008509 GO:0009058 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0012505 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016036 GO:0019932 GO:0022857 GO:0023052 GO:0031667 GO:0031668 GO:0031669 GO:0031984 GO:0033554 GO:0034220 GO:0035435 GO:0035556 GO:0036094 GO:0042594 GO:0043167 GO:0043168 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048016 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0071496 GO:0071704 GO:0071944 GO:0098656 GO:0098660 GO:0098661 GO:0098791 GO:1901576
PFAM: PF03105.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0156060	sp\|Q8S403\|PHO1_ARATH	65.866	791	242	9	1	772	1	782	0.0	1056

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0156060	A0A072VHJ2	99.094	773	6	1	1	772	1	773	0.0	1596

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0015580	Msa0156060	0.951799	9.502262e-110	-8.615850e-47
Msa0109740	Msa0156060	0.945381	3.395790e-104	-8.615850e-47
Msa0156060	Msa0156100	0.992414	3.784878e-193	-8.615850e-47
Msa0156060	Msa0170830	0.803059	4.176356e-49	-8.615850e-47
Msa0156060	Msa0191990	0.844205	8.731340e-59	-8.615850e-47
Msa0156060	Msa0192680	0.838645	2.543271e-57	-8.615850e-47
Msa0156060	Msa0272600	0.850875	1.279350e-60	-8.615850e-47
Msa0156060	Msa0312810	0.846805	1.724647e-59	-8.615850e-47
Msa0156060	Msa0434130	0.820225	7.674892e-53	-8.615850e-47
Msa0156060	Msa0477910	0.814720	1.334365e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0156060	MtrunA17_Chr1g0166651	99.094	773	6	1	1	772	1	773	0.0	1596
Msa0156060	MtrunA17_Chr1g0187381	77.191	776	167	4	1	771	54	824	0.0	1239
Msa0156060	MtrunA17_Chr8g0368741	46.320	788	397	7	1	771	1	779	0.0	709
Msa0156060	MtrunA17_Chr5g0417841	32.650	781	482	11	4	771	3	752	3.85e-145	444
Msa0156060	MtrunA17_Chr2g0302531	34.601	815	470	21	2	772	1	796	5.89e-144	442
Msa0156060	MtrunA17_Chr7g0217801	33.755	791	493	14	2	772	1	780	3.11e-139	429
Msa0156060	MtrunA17_Chr7g0217771	38.920	352	205	5	429	772	1	350	7.10e-80	260
Msa0156060	MtrunA17_Chr7g0217821	35.694	353	217	5	429	772	1	352	1.26e-70	235
Msa0156060	MtrunA17_Chr7g0217831	32.487	394	234	11	2	380	1	377	1.62e-46	170
Msa0156060	MtrunA17_Chr7g0246941	29.446	343	207	14	424	747	76	402	7.71e-31	126

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0156060	AT3G23430.1	65.866	791	242	9	1	772	1	782	0.0	1056
Msa0156060	AT1G68740.1	46.683	799	384	11	1	772	1	784	0.0	683
Msa0156060	AT1G68740.2	44.932	730	360	11	1	703	1	715	0.0	584
Msa0156060	AT3G29060.1	32.406	827	464	13	2	767	1	793	2.30e-146	449
Msa0156060	AT1G35350.1	34.483	783	465	15	2	771	1	748	3.65e-144	441
Msa0156060	AT1G26730.1	34.234	777	461	14	2	765	1	740	5.87e-144	441
Msa0156060	AT1G14040.1	31.758	825	497	15	2	772	1	813	1.07e-142	439
Msa0156060	AT4G25350.1	32.991	779	479	10	2	772	1	744	4.54e-139	428
Msa0156060	AT1G69480.2	33.208	801	462	16	2	765	1	765	5.70e-138	426
Msa0156060	AT1G69480.1	33.208	801	462	16	2	765	1	765	5.70e-138	426

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Find 147 sgRNAs with CRISPR-Local

Find 591 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCGAATCGAATCGAAAA+TGG	0.266596	1_4:+21682740	None:intergenic
AAACTATGTTACGAATAACA+CGG	0.734521	1_4:+21673886	None:intergenic
AAAGAAGAACAAGCTCCCAA+AGG	0.658529	1_4:-21682777	Msa0156060:CDS
AAATATGGTGAAATTCTCAA+AGG	0.620764	1_4:-21682898	Msa0156060:exon
AAATTCAGAAACATCACAAA+TGG	0.467434	1_4:-21678794	Msa0156060:CDS
AACGAGCATCTAAACAATGT+TGG	0.586936	1_4:-21672387	Msa0156060:CDS
AAGAGAGTGAGTTTCTTGAG+AGG	0.626823	1_4:-21680740	Msa0156060:CDS
AAGCAGTCTACCCTGTCTTC+AGG	0.450330	1_4:-21674994	Msa0156060:intron
AAGCTCAACTAATACCAGAA+TGG	0.558338	1_4:-21682869	Msa0156060:CDS
AAGTGGGGCCTGTTCAAACA+AGG	0.571452	1_4:-21672603	Msa0156060:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTCTCAAACATAGAGAAATA+TGG	-	chr1_4:21672074-21672093	Msa0156060:three_prime_UTR	30.0%
CTTCATACCTGAATGATATT+TGG	+	chr1_4:21672312-21672331	None:intergenic	30.0%
TGTTGTTCTGTAACATGTTA+GGG	-	chr1_4:21672359-21672378	Msa0156060:CDS	30.0%
TAATGAAGCCATGAATGAAA+GGG	+	chr1_4:21672692-21672711	None:intergenic	30.0%
TGTTAGCAACAATATACATC+CGG	-	chr1_4:21672826-21672845	Msa0156060:intron	30.0%
AGAAAGATTCAAGAATGACA+TGG	-	chr1_4:21672963-21672982	Msa0156060:intron	30.0%
CAATAAAATCTCAACTTGAC+CGG	-	chr1_4:21673040-21673059	Msa0156060:intron	30.0%
ATCAGATGGTACAAAATTCA+CGG	-	chr1_4:21673198-21673217	Msa0156060:CDS	30.0%
TTTCTTAATCATTTGGGTCA+AGG	+	chr1_4:21673451-21673470	None:intergenic	30.0%
AAAACAATGGAGAGAGAAAA+AGG	+	chr1_4:21680251-21680270	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	21672011	21682998	21672011	ID=Msa0156060;Name=Msa0156060
chr1_4	mRNA	21672011	21682998	21672011	ID=Msa0156060-mRNA-1;Parent=Msa0156060;Name=Msa0156060-mRNA-1;_AED=0.12;_eAED=0.12;_QI=82\|1\|1\|1\|1\|1\|14\|315\|772
chr1_4	exon	21672011	21672416	21672011	ID=Msa0156060-mRNA-1:exon:7849;Parent=Msa0156060-mRNA-1
chr1_4	exon	21672541	21672677	21672541	ID=Msa0156060-mRNA-1:exon:7848;Parent=Msa0156060-mRNA-1
chr1_4	exon	21673094	21673372	21673094	ID=Msa0156060-mRNA-1:exon:7847;Parent=Msa0156060-mRNA-1
chr1_4	exon	21673463	21673615	21673463	ID=Msa0156060-mRNA-1:exon:7846;Parent=Msa0156060-mRNA-1
chr1_4	exon	21673715	21673759	21673715	ID=Msa0156060-mRNA-1:exon:7845;Parent=Msa0156060-mRNA-1
chr1_4	exon	21673869	21673973	21673869	ID=Msa0156060-mRNA-1:exon:7844;Parent=Msa0156060-mRNA-1
chr1_4	exon	21674150	21674399	21674150	ID=Msa0156060-mRNA-1:exon:7843;Parent=Msa0156060-mRNA-1
chr1_4	exon	21674995	21675115	21674995	ID=Msa0156060-mRNA-1:exon:7842;Parent=Msa0156060-mRNA-1
chr1_4	exon	21675691	21675820	21675691	ID=Msa0156060-mRNA-1:exon:7841;Parent=Msa0156060-mRNA-1
chr1_4	exon	21676001	21676072	21676001	ID=Msa0156060-mRNA-1:exon:7840;Parent=Msa0156060-mRNA-1
chr1_4	exon	21676866	21676914	21676866	ID=Msa0156060-mRNA-1:exon:7839;Parent=Msa0156060-mRNA-1
chr1_4	exon	21678499	21678841	21678499	ID=Msa0156060-mRNA-1:exon:7838;Parent=Msa0156060-mRNA-1
chr1_4	exon	21680595	21680907	21680595	ID=Msa0156060-mRNA-1:exon:7837;Parent=Msa0156060-mRNA-1
chr1_4	exon	21682686	21682998	21682686	ID=Msa0156060-mRNA-1:exon:7836;Parent=Msa0156060-mRNA-1
chr1_4	five_prime_UTR	21682917	21682998	21682917	ID=Msa0156060-mRNA-1:five_prime_utr;Parent=Msa0156060-mRNA-1
chr1_4	CDS	21682686	21682916	21682686	ID=Msa0156060-mRNA-1:cds;Parent=Msa0156060-mRNA-1
chr1_4	CDS	21680595	21680907	21680595	ID=Msa0156060-mRNA-1:cds;Parent=Msa0156060-mRNA-1
chr1_4	CDS	21678499	21678841	21678499	ID=Msa0156060-mRNA-1:cds;Parent=Msa0156060-mRNA-1
chr1_4	CDS	21676866	21676914	21676866	ID=Msa0156060-mRNA-1:cds;Parent=Msa0156060-mRNA-1
chr1_4	CDS	21676001	21676072	21676001	ID=Msa0156060-mRNA-1:cds;Parent=Msa0156060-mRNA-1
chr1_4	CDS	21675691	21675820	21675691	ID=Msa0156060-mRNA-1:cds;Parent=Msa0156060-mRNA-1
chr1_4	CDS	21674995	21675115	21674995	ID=Msa0156060-mRNA-1:cds;Parent=Msa0156060-mRNA-1
chr1_4	CDS	21674150	21674399	21674150	ID=Msa0156060-mRNA-1:cds;Parent=Msa0156060-mRNA-1
chr1_4	CDS	21673869	21673973	21673869	ID=Msa0156060-mRNA-1:cds;Parent=Msa0156060-mRNA-1
chr1_4	CDS	21673715	21673759	21673715	ID=Msa0156060-mRNA-1:cds;Parent=Msa0156060-mRNA-1
chr1_4	CDS	21673463	21673615	21673463	ID=Msa0156060-mRNA-1:cds;Parent=Msa0156060-mRNA-1
chr1_4	CDS	21673094	21673372	21673094	ID=Msa0156060-mRNA-1:cds;Parent=Msa0156060-mRNA-1
chr1_4	CDS	21672541	21672677	21672541	ID=Msa0156060-mRNA-1:cds;Parent=Msa0156060-mRNA-1
chr1_4	CDS	21672326	21672416	21672326	ID=Msa0156060-mRNA-1:cds;Parent=Msa0156060-mRNA-1
chr1_4	three_prime_UTR	21672011	21672325	21672011	ID=Msa0156060-mRNA-1:three_prime_utr;Parent=Msa0156060-mRNA-1

Gene Sequence

>Msa0156060

ATGGTGAAATTCTCAAAGGAACTTGAAGCTCAACTAATACCAGAATGGAAAGATGCATTTGTAAACTACAAGATGCTAAAGAAACACATAAAGAAGATCAAACTCTCAAGAGTTCCTAAAGAAGAACAAGCTCCCAAAGGAGACTTTGGCTACTCCATTTTCGATTCGATTCGGTTTGTGACTAATAAGTTGTTTTGTTCTTCAGACAATAACAAACCAAATATCATTCAGGTGAGGAGGAAAATGATGGAGGATAGTGAAGAAGAGGTGTATGAAACAGAACTTGCACAATTGTTTTCAGAAGAGGATGAAGTGCATGTGTTTTTTGCAAGGCTAGATGAAGAGCTTAATAAGGTGAACCAATTTTATAGGAAACAAGAGAGTGAGTTTCTTGAGAGGGGTGATATGCTTAGCAAACAACTTCAGATCTTGCTTGATCTTAAACAACTTCTTACTGACCGGCGCCGAAAAAATAATCTGCCGCCGAGAAATTCCAACGCCGAGATTTTCTCTCGTTCTCCCGATCAAAGCTCAAATTATTCAGAAAGTTGTGAAGAATCAGATGAAACAAATTCAGAAACATCACAAATGGATGAAGTAATATCAACTTTAGCAAAAAATGGTGTGAATTTTGTTAATTCAGCAACAAGGGTAAAGACAAAAAAAGGAAAACCTAAAATGGCAATGAGAATTGATATTCCAGCCACCACACCAACAAAGGCTATAACGGCTGTTACTTCCATTTTGTGGGAGGATTTGGTGAATAGTCCTATAAAAGAAGGGTATGGAGATTTCATTAACAAGAGAAAAATTCAATATGCTGAAAAGATGATTAGAAGTGCTTTTGTTGAACTCTATAAAGGCCTTGGCCTTCTCAAAACTTACAGCTCACTAAATATAGTGGCATTTTCAAAGATCCTCAAAAAGTTTGACAAGGTGGCTTGCCAAACAGCTTCTGCAAGTTATTTGAAAACAGTGAAAAGATCACATTTCATTAGTTCAGACAAGGTTGTTAGACTAATGGATGAAGTGGAATCCATATTCACAAAGCACTTTGCTAGCAATGATAGAAAAAAGGCAATGAAGTTTTTAAAACCTCAAGTGCAGAAAGGTTCTCATATGGTCACCTTCTTTGTCGGGTTATGTACAGGTTGTTTTGTATCTTTGTTTTGTGTATATGCAATCTTGGCCCACTTGTGTGGTATTTTCTCTCCTAACACTGAGCCAGCTTATATGGAAGCAGTCTACCCTGTCTTCAGTGTATTTGCATTGTTAAGTCTACACTTGTTCATGTATGGATGCAACCTATACATGTGGAAGGCTACAAGAATCAATCACAATTTCATCTTTGAATTCTCACCAAGCACAGCATTAAAGCATAGAGATGCATTTCTTATGTGCACTGTATTCATGACTGCTGTGGTTGGGTCAATGGTTGTGCATCTTCTTCTTAGGGCTGCAGGATTTTTTCCGGGCAATGTTGATGCCATCCCTGGAATTCTTCTTCTGTTTTTCATCGCTCTGCTCATTTGCCCGTTAGATATATTCTATCGCCCAACTCGTTTCTGCTTCATCCGTGTTATTCGTAACATAGTTTGCTCTCCATTTTATAGGGTTCTTCTAGTGGACTTTTTTATGGCTGATCAACTTACCAGCCAGATACCATTGCTAAGGCATTTGGAGACAACTGGTTGTCACATTTTATCTAGAGTATTCAAAACACACCATCCTGAAACTTGTCATTCTGGAAGATTATACATGGAAATAACTTATATTATCTCATTTTTGCCATATTTTTGGCGTGCCCTCCAGTGTATAAGACGATGGTTTGATGACTCTGATGTTGCACATTTGGCTAACATGGGGAAGTATGTGTCTGCAATGGTTGCAGCCGGGGCTAGAGTAACATATGGCAGGCAAGATAACAATATAATGTTTGTTATTGTGATAATCACTTCTGTGATGGCTACATTGTATCAATTGTATTGGGATTTTGTCAAGGATTGGGGGTTTCTTAATCCTAACTCCAGAAATGCATGGCTTAGAGATGATCTTGTCCTGAAAAATAAGAGCATATACTACATGTCTATGGCACTAAATGTTGTTTTAAGAGTGACTTGGACAGAGACTGTCATGCACTTCAAAGTGGGGCCTGTTCAAACAAGGTTGTTAGAATTTCTGTTAGCTTCATTGGAGGTTATTAGAAGAGGGCATTGGAATTTCTACAGGTTGGAGAACGAGCATCTAAACAATGTTGGTCATTACAGAGCAGTGAAGACAGTTCCATTACCCTTTCGTGATGCAGATTCGGATAATTGA

Protein sequence

>Msa0156060

MVKFSKELEAQLIPEWKDAFVNYKMLKKHIKKIKLSRVPKEEQAPKGDFGYSIFDSIRFVTNKLFCSSDNNKPNIIQVRRKMMEDSEEEVYETELAQLFSEEDEVHVFFARLDEELNKVNQFYRKQESEFLERGDMLSKQLQILLDLKQLLTDRRRKNNLPPRNSNAEIFSRSPDQSSNYSESCEESDETNSETSQMDEVISTLAKNGVNFVNSATRVKTKKGKPKMAMRIDIPATTPTKAITAVTSILWEDLVNSPIKEGYGDFINKRKIQYAEKMIRSAFVELYKGLGLLKTYSSLNIVAFSKILKKFDKVACQTASASYLKTVKRSHFISSDKVVRLMDEVESIFTKHFASNDRKKAMKFLKPQVQKGSHMVTFFVGLCTGCFVSLFCVYAILAHLCGIFSPNTEPAYMEAVYPVFSVFALLSLHLFMYGCNLYMWKATRINHNFIFEFSPSTALKHRDAFLMCTVFMTAVVGSMVVHLLLRAAGFFPGNVDAIPGILLLFFIALLICPLDIFYRPTRFCFIRVIRNIVCSPFYRVLLVDFFMADQLTSQIPLLRHLETTGCHILSRVFKTHHPETCHSGRLYMEITYIISFLPYFWRALQCIRRWFDDSDVAHLANMGKYVSAMVAAGARVTYGRQDNNIMFVIVIITSVMATLYQLYWDFVKDWGFLNPNSRNAWLRDDLVLKNKSIYYMSMALNVVLRVTWTETVMHFKVGPVQTRLLEFLLASLEVIRRGHWNFYRLENEHLNNVGHYRAVKTVPLPFRDADSDN*