AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0126300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0126300 MtrunA17_Chr1g0189151 96.212 396 14 1 1 396 1 395 0.0 786
Msa0126300 MtrunA17_Chr3g0127861 54.258 411 154 6 19 395 14 424 1.39e-160 457
Msa0126300 MtrunA17_Chr5g0395041 42.280 421 203 7 9 391 17 435 2.86e-111 333
Msa0126300 MtrunA17_Chr4g0000091 30.450 289 182 7 92 369 71 351 9.17e-35 132
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0126300 AT1G64720.1 61.399 386 130 5 13 396 17 385 3.03e-172 486
Msa0126300 AT5G54170.1 55.696 316 134 4 84 395 120 433 2.63e-122 362
Msa0126300 AT4G14500.1 45.169 414 186 8 15 391 23 432 1.16e-116 347
Msa0126300 AT3G23080.1 44.282 411 196 10 9 391 13 418 1.90e-107 323
Msa0126300 AT3G23080.2 45.408 392 181 10 28 391 1 387 9.34e-104 312
Msa0126300 AT3G23080.3 45.408 392 181 10 28 391 1 387 9.34e-104 312
Msa0126300 AT4G14500.2 40.562 249 110 6 21 231 29 277 5.85e-54 181
Msa0126300 AT3G13062.1 30.159 315 204 8 91 395 82 390 5.41e-39 144
Msa0126300 AT3G13062.2 30.159 315 204 8 91 395 82 390 8.83e-39 144
Msa0126300 AT3G13062.3 29.102 323 205 8 91 395 82 398 1.05e-36 138
Msa0126300 AT1G55960.1 31.270 307 190 9 78 369 68 368 1.72e-35 135
Msa0126300 AT1G55960.2 28.990 307 172 11 78 369 68 343 2.91e-23 100

Find 148 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATCATAGGTCGTCGAATT+TGG 0.185811 1_3:-55266876 Msa0126300:CDS
AGTTGGTTAGGGATTTCTTT+TGG 0.205035 1_3:-55267130 Msa0126300:CDS
GTGACCAAGGCGGTTGTATT+TGG 0.231338 1_3:-55265476 Msa0126300:CDS
TTGAGCCTAATAACTATTCT+TGG 0.254030 1_3:-55268694 Msa0126300:CDS
GTTCTTTCACTATGAAGATA+TGG 0.258130 1_3:-55265813 Msa0126300:CDS
TTCCTCTGTTTCCATTTCAT+TGG 0.259256 1_3:-55268944 Msa0126300:five_prime_UTR
GAGAAGAAAGATGGTTAAAT+AGG 0.269925 1_3:+55268975 None:intergenic
GAATTCCTTTGTTGTTGTTA+TGG 0.286629 1_3:-55268813 Msa0126300:CDS
TAATATAGATCTACCCGTTT+AGG 0.290502 1_3:+55266396 None:intergenic
GTACTCCAAGAATAGTTATT+AGG 0.298005 1_3:+55268689 None:intergenic
TGTTGTTGTTATGGATATCT+TGG 0.306159 1_3:-55268804 Msa0126300:CDS
ACGTTCCTCAATTTCCTATT+GGG 0.307440 1_3:-55269062 Msa0126300:five_prime_UTR
AACGTTCCTCAATTTCCTAT+TGG 0.312903 1_3:-55269063 Msa0126300:five_prime_UTR
ATTAGGCTCAATAGCCCATT+TGG 0.314280 1_3:+55268706 None:intergenic
CTTGCCTGCACCCTTGATCA+AGG 0.320705 1_3:-55265503 Msa0126300:CDS
TGTATTCACTCTTATCCTTT+CGG 0.327106 1_3:-55268875 Msa0126300:five_prime_UTR
CGCTAAGCTTGGAGTTCGTC+AGG 0.333843 1_3:-55265774 Msa0126300:CDS
GCTTCAAAACCAACCTGGTT+TGG 0.345626 1_3:-55268624 Msa0126300:CDS
CATGTCACGTGCAGTTCTTC+TGG 0.349830 1_3:-55268424 Msa0126300:intron
CTCTACTGCCACAACTTACT+TGG 0.352156 1_3:+55265360 None:intergenic
ATGCGAGTCCTGAGTTGGTT+AGG 0.358805 1_3:-55267142 Msa0126300:CDS
TTCAGTCTCCAACAGGTTAC+CGG 0.359683 1_3:+55265601 None:intergenic
CTTTGGATTGCTGTTATCTT+CGG 0.360253 1_3:-55268755 Msa0126300:CDS
TATCATAGGTCGTCGAATTT+GGG 0.370573 1_3:-55266875 Msa0126300:CDS
CAGCCATGGTTCAAGAGAAA+TGG 0.370619 1_3:-55265317 Msa0126300:three_prime_UTR
TTCTTTCACTATGAAGATAT+GGG 0.383405 1_3:-55265812 Msa0126300:CDS
CATGAATAATATCAATAATC+AGG 0.390673 1_3:-55265192 Msa0126300:three_prime_UTR
CCTGTTGGAGACTGAAAATC+AGG 0.397121 1_3:-55265594 Msa0126300:CDS
GCCCGACGGTTTGGAAAATT+CGG 0.400471 1_3:-55265449 Msa0126300:CDS
TGTTGGAAGTGTGGAAGAAT+TGG 0.406300 1_3:+55268919 None:intergenic
TTTGGAATAGCCCGACGGTT+TGG 0.406644 1_3:-55265458 Msa0126300:CDS
GTGTTGTTGTTGGTTGGGCT+TGG 0.406854 1_3:-55268733 Msa0126300:CDS
GCGATTGTTGTTATTGTTGT+TGG 0.410403 1_3:+55268902 None:intergenic
GTTGTTGTTATGGATATCTT+GGG 0.415623 1_3:-55268803 Msa0126300:CDS
TATAAGAAAGAAAGGGATTC+CGG 0.417822 1_3:-55265707 Msa0126300:CDS
CGTTTAGGTTTGCTCTGCCT+TGG 0.417964 1_3:+55266411 None:intergenic
CTTCGGTGTTGTTGTTGGTT+GGG 0.423403 1_3:-55268738 Msa0126300:CDS
TTCTCTATCACTGCAAAAGA+AGG 0.424377 1_3:+55266900 None:intergenic
AGGTTTGCTCTGCCTTGGTA+TGG 0.426290 1_3:+55266416 None:intergenic
CAAGGCAGAGCAAACCTAAA+CGG 0.429915 1_3:-55266410 Msa0126300:CDS
TCTTCGGTGTTGTTGTTGGT+TGG 0.430475 1_3:-55268739 Msa0126300:CDS
ATACCTAAGCTTCTAGTTGT+TGG 0.433725 1_3:-55265539 Msa0126300:CDS
AAGAATTGGAACCAATGAAA+TGG 0.436501 1_3:+55268933 None:intergenic
GCTGTAATTGAATACCCAAT+AGG 0.438568 1_3:+55269048 None:intergenic
TTTGCAAAATTTGTGTAAGT+TGG 0.443993 1_3:-55268356 Msa0126300:CDS
CAAGCTTGGTAAGTCATGTT+TGG 0.447227 1_3:+55268280 None:intergenic
GTTGGGCTTGGAAACCCAAA+TGG 0.449819 1_3:-55268721 Msa0126300:CDS
TTAGGCTCAATAGCCCATTT+GGG 0.450902 1_3:+55268707 None:intergenic
TGGTCACTAGCCCTTGATCA+AGG 0.452319 1_3:+55265492 None:intergenic
TTGGAGTTCGTCAGGGTATG+TGG 0.453950 1_3:-55265766 Msa0126300:CDS
GTTATCTTCGGTGTTGTTGT+TGG 0.454908 1_3:-55268743 Msa0126300:CDS
TCTTCAAGTTTCGAATTCCT+TGG 0.455904 1_3:-55268661 Msa0126300:CDS
CAAAATTTGTGTAAGTTGGT+TGG 0.456209 1_3:-55268352 Msa0126300:CDS
TACGTACGTATAAGAAAGAA+AGG 0.462465 1_3:-55265715 Msa0126300:CDS
AAGGCAGAGCAAACCTAAAC+GGG 0.465305 1_3:-55266409 Msa0126300:CDS
TTCTGGTGGTGAAAGTGAAA+AGG 0.469810 1_3:-55268407 Msa0126300:CDS
TGCGAGTCCTGAGTTGGTTA+GGG 0.472434 1_3:-55267141 Msa0126300:CDS
CTTGATCAAGGGTGCAGGCA+AGG 0.479777 1_3:+55265504 None:intergenic
TTGTATCAAATTGGCAGCCA+TGG 0.482398 1_3:-55265331 Msa0126300:three_prime_UTR
TCTGGTGGTGAAAGTGAAAA+GGG 0.485541 1_3:-55268406 Msa0126300:CDS
TTACATTCATAGCTCCACTT+TGG 0.487272 1_3:-55268772 Msa0126300:CDS
TTCTTATACGTACGTAGTCC+AGG 0.487357 1_3:+55265722 None:intergenic
ATTGTTCTGCTGTTGTTCCT+CGG 0.491620 1_3:+55268847 None:intergenic
ATGAAGATATGGGCATACCT+TGG 0.492383 1_3:-55265802 Msa0126300:CDS
CCGCCAACAACTAGAAGCTT+AGG 0.492437 1_3:+55265536 None:intergenic
AAAAGAATAGAGAAGAAAGA+TGG 0.497082 1_3:+55268966 None:intergenic
CCAGTTAAATCAAGAAAAGA+TGG 0.498146 1_3:-55265860 Msa0126300:intron
TGAAGATATGGGCATACCTT+GGG 0.500114 1_3:-55265801 Msa0126300:CDS
TCCAGGATCAAACTTCTTGA+CGG 0.500862 1_3:+55265739 None:intergenic
GCCGTCAAGAAGTTTGATCC+TGG 0.503459 1_3:-55265740 Msa0126300:CDS
GTTTCTTGTCGAGGAAATAC+CGG 0.506043 1_3:-55265386 Msa0126300:three_prime_UTR
AACTTACTACTGTGTGACTA+AGG 0.511110 1_3:-55266842 Msa0126300:intron
CTTCTGATGACAAACCGATC+GGG 0.515089 1_3:-55265568 Msa0126300:CDS
ACCAGCTTGGATTCAGATGA+TGG 0.516098 1_3:-55268314 Msa0126300:CDS
TTTGCTCTGCCTTGGTATGG+AGG 0.518246 1_3:+55266419 None:intergenic
TTGCCTGCACCCTTGATCAA+GGG 0.518780 1_3:-55265502 Msa0126300:CDS
CCTTGGGAAATCGCTAAGCT+TGG 0.519071 1_3:-55265785 Msa0126300:CDS
CCTAAGCTTCTAGTTGTTGG+CGG 0.520168 1_3:-55265536 Msa0126300:CDS
TGGAGTTCGTCAGGGTATGT+GGG 0.522164 1_3:-55265765 Msa0126300:CDS
ATTCAAGAGTGTGAGGTCAC+TGG 0.523985 1_3:-55267056 Msa0126300:CDS
TTGATCAAGGGTGCAGGCAA+GGG 0.525896 1_3:+55265505 None:intergenic
TAGGAAATTGAGGAACGTTA+CGG 0.527940 1_3:+55269067 None:intergenic
CTTGGTCCCTACGCCAAGCT+TGG 0.528324 1_3:+55268266 None:intergenic
TGTTATTGTTGTTGGAAGTG+TGG 0.531983 1_3:+55268910 None:intergenic
AAACCATTTCTCTTGAACCA+TGG 0.533240 1_3:+55265314 None:intergenic
TTAGGTATGCTTCTCCCGAT+CGG 0.542706 1_3:+55265554 None:intergenic
CAAACATGACTTACCAAGCT+TGG 0.544826 1_3:-55268279 Msa0126300:CDS
GAATACCCAATAGGAAATTG+AGG 0.548329 1_3:+55269057 None:intergenic
GGTCACTAGCCCTTGATCAA+GGG 0.548340 1_3:+55265493 None:intergenic
AGTGATAGAGAATATATCAT+AGG 0.553664 1_3:-55266889 Msa0126300:CDS
GGGATGATGAGTTTCGGTCG+AGG 0.555696 1_3:-55267109 Msa0126300:CDS
TAGCCCTTGATCAAGGGTGC+AGG 0.555894 1_3:+55265499 None:intergenic
TTGGGCTTGGAAACCCAAAT+GGG 0.556004 1_3:-55268720 Msa0126300:CDS
GTTTGGAATACTCCGCAACC+AGG 0.561804 1_3:-55268607 Msa0126300:intron
AAGGGTGCAGGCAAGGGCAA+TGG 0.563247 1_3:+55265511 None:intergenic
GTGAAAGTGAAAAGGGATTG+AGG 0.563385 1_3:-55268399 Msa0126300:CDS
TGATGAGTTTCGGTCGAGGT+GGG 0.565414 1_3:-55267105 Msa0126300:CDS
GACTTACCAAGCTTGGCGTA+GGG 0.568038 1_3:-55268272 Msa0126300:CDS
GACGGTTTGGAAAATTCGGA+AGG 0.568472 1_3:-55265445 Msa0126300:CDS
AAGAAATCCCTAACCAACTC+AGG 0.569522 1_3:+55267134 None:intergenic
ACACTTCACATGAAGTCAGC+TGG 0.570067 1_3:+55265837 None:intergenic
TGACTTACCAAGCTTGGCGT+AGG 0.571589 1_3:-55268273 Msa0126300:CDS
CGGAGTATTCCAAACCAGGT+TGG 0.575515 1_3:+55268615 None:intergenic
ATGATGAGTTTCGGTCGAGG+TGG 0.576909 1_3:-55267106 Msa0126300:CDS
TCCATCATCTGAATCCAAGC+TGG 0.578196 1_3:+55268313 None:intergenic
TATTCCAAATACAACCGCCT+TGG 0.579315 1_3:+55265472 None:intergenic
TCTCTATCACTGCAAAAGAA+GGG 0.579682 1_3:+55266901 None:intergenic
GCCACAACTTACTTGGCCGC+CGG 0.581389 1_3:+55265367 None:intergenic
AGACTCGACCGGTAACCTGT+TGG 0.583874 1_3:-55265609 Msa0126300:CDS
TCTTCTGATGACAAACCGAT+CGG 0.596047 1_3:-55265569 Msa0126300:CDS
GGTTTGGAAAATTCGGAAGG+AGG 0.596932 1_3:-55265442 Msa0126300:CDS
GTTGCGGAGTATTCCAAACC+AGG 0.600622 1_3:+55268611 None:intergenic
AAGATAACAGCAATCCAAAG+TGG 0.602074 1_3:+55268758 None:intergenic
TGAAGATGCGAGTCCTGAGT+TGG 0.613594 1_3:-55267147 Msa0126300:CDS
TCAGAGCTTCAAAACCAACC+TGG 0.614875 1_3:-55268629 Msa0126300:CDS
CCAAGCTTAGCGATTTCCCA+AGG 0.615945 1_3:+55265785 None:intergenic
GATGGTGCAGTGGGTGCGCA+AGG 0.620411 1_3:-55267027 Msa0126300:intron
TAAACTGTCAATTACCTGCA+CGG 0.621201 1_3:+55266358 None:intergenic
TGTTCCTCGGTGAAACCGAA+AGG 0.621677 1_3:+55268860 None:intergenic
ACGTACGTATAAGAAAGAAA+GGG 0.623052 1_3:-55265714 Msa0126300:CDS
ACCGGCGGCCAAGTAAGTTG+TGG 0.623145 1_3:-55265368 Msa0126300:three_prime_UTR
CTGGAACAATGATGGTGCAG+TGG 0.625357 1_3:-55267037 Msa0126300:CDS
AACCAATGAAATGGAAACAG+AGG 0.627544 1_3:+55268942 None:intergenic
GATATCCATAACAACAACAA+AGG 0.628535 1_3:+55268808 None:intergenic
TGAGGTCACTGGAACAATGA+TGG 0.628803 1_3:-55267045 Msa0126300:CDS
AGATCTGTGGAAGACTCGAC+CGG 0.630222 1_3:-55265620 Msa0126300:CDS
TTATTAGCACATGCTGACAA+TGG 0.637025 1_3:+55265680 None:intergenic
TGATCAAGGGCTAGTGACCA+AGG 0.638516 1_3:-55265489 Msa0126300:CDS
GGGATTGAGGAGTATAGTGA+CGG 0.640769 1_3:-55268386 Msa0126300:CDS
GTCACGTGCAGTTCTTCTGG+TGG 0.640922 1_3:-55268421 Msa0126300:intron
ACCGTTCTACTGCGATACTG+TGG 0.641157 1_3:+55267173 None:intergenic
TTCAACTATTCAAGAGTGTG+AGG 0.641287 1_3:-55267063 Msa0126300:CDS
ACCACAGTATCGCAGTAGAA+CGG 0.641569 1_3:-55267174 Msa0126300:CDS
TGGAACAATGATGGTGCAGT+GGG 0.643324 1_3:-55267036 Msa0126300:CDS
GTTCTACTGCGATACTGTGG+TGG 0.646637 1_3:+55267176 None:intergenic
GGAGTTCGTCAGGGTATGTG+GGG 0.647398 1_3:-55265764 Msa0126300:CDS
AGCTTGGCGTAGGGACCAAG+AGG 0.653449 1_3:-55268263 Msa0126300:intron
AGCTCTGAATCATTAAACCA+AGG 0.662274 1_3:+55268644 None:intergenic
ACATGCTGACAATGGAACGC+CGG 0.666475 1_3:+55265688 None:intergenic
TACCTTGTTCCTCCATACCA+AGG 0.669373 1_3:-55266428 Msa0126300:CDS
GCTAAGCTTGGAGTTCGTCA+GGG 0.670012 1_3:-55265773 Msa0126300:CDS
TGCTGATTACGTGAGATCTG+TGG 0.675039 1_3:-55265633 Msa0126300:CDS
TTGTATTTGGAATAGCCCGA+CGG 0.676217 1_3:-55265463 Msa0126300:CDS
GTGGAGCTATGAATGTAACA+AGG 0.685832 1_3:+55268777 None:intergenic
TCTTGTCGAGGAAATACCGG+CGG 0.694884 1_3:-55265383 Msa0126300:three_prime_UTR
TGCCTTGGTATGGAGGAACA+AGG 0.712864 1_3:+55266426 None:intergenic
TTATCCTTTCGGTTTCACCG+AGG 0.749917 1_3:-55268864 Msa0126300:five_prime_UTR
TCAAGGGCTAGTGACCAAGG+CGG 0.799326 1_3:-55265486 Msa0126300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAATTATAGTC+TGG - chr1_3:55266042-55266061 Msa0126300:intron 10.0%
!! TTGTAAAATAGAATTTAAAT+AGG + chr1_3:55266379-55266398 None:intergenic 10.0%
!! TTTATTACTATTACTATTAT+TGG + chr1_3:55266494-55266513 None:intergenic 10.0%
!! TAATAGCTAATATATTAAAT+AGG + chr1_3:55267536-55267555 None:intergenic 10.0%
!! AATAATAATTCAATGAAATC+AGG + chr1_3:55265849-55265868 None:intergenic 15.0%
!! ATAATTTAAGCAACTAAAAT+TGG + chr1_3:55265924-55265943 None:intergenic 15.0%
!!! CACTATTTAAATATTGATTT+AGG - chr1_3:55266402-55266421 Msa0126300:CDS 15.0%
!! GTTTAAATTATTGAAAATGT+TGG - chr1_3:55266432-55266451 Msa0126300:CDS 15.0%
!!! CATTTTACATTTATTTTAGT+AGG - chr1_3:55266519-55266538 Msa0126300:intron 15.0%
!! CTTATTAATTTAAGTAATTG+TGG - chr1_3:55268147-55268166 Msa0126300:intron 15.0%
!! ATTTAGTTGCTAAAATTGTA+GGG + chr1_3:55266822-55266841 None:intergenic 20.0%
!! AATTTAGTTGCTAAAATTGT+AGG + chr1_3:55266823-55266842 None:intergenic 20.0%
!! TTTCATCAACATTGTTATAA+TGG - chr1_3:55267391-55267410 Msa0126300:intron 20.0%
!!! CAATTCATTTTTCTTAATCT+TGG - chr1_3:55267869-55267888 Msa0126300:intron 20.0%
!!! CATTTTTTTTCTTTTCTACA+TGG - chr1_3:55268101-55268120 Msa0126300:intron 20.0%
!! TAAGAATTTAATGATTCCTT+TGG + chr1_3:55268131-55268150 None:intergenic 20.0%
!!! GAGTTTATTTTGTATCAAAT+TGG - chr1_3:55268735-55268754 Msa0126300:CDS 20.0%
!! CATGAATAATATCAATAATC+AGG - chr1_3:55268883-55268902 Msa0126300:five_prime_UTR 20.0%
! TGAGTCAGAAAAATAGATAT+GGG + chr1_3:55265064-55265083 None:intergenic 25.0%
! ATGAGTCAGAAAAATAGATA+TGG + chr1_3:55265065-55265084 None:intergenic 25.0%
! AAAAGAATAGAGAAGAAAGA+TGG + chr1_3:55265112-55265131 None:intergenic 25.0%
! AATGATATTAAAAACGAACC+TGG + chr1_3:55265489-55265508 None:intergenic 25.0%
!! TTTTAATCAAATGCGTGTTT+GGG - chr1_3:55265520-55265539 Msa0126300:CDS 25.0%
! ATGTGGTTATTGTTTCATAT+GGG - chr1_3:55265571-55265590 Msa0126300:CDS 25.0%
! TTTGCAAAATTTGTGTAAGT+TGG - chr1_3:55265719-55265738 Msa0126300:CDS 25.0%
! TATTTATCCTAAGTTGTTCT+CGG + chr1_3:55266016-55266035 None:intergenic 25.0%
! TCTGATATTTAACATGTCTT+TGG - chr1_3:55266341-55266360 Msa0126300:intron 25.0%
!!! ATTGGATTAGATTTTGTATG+TGG + chr1_3:55266476-55266495 None:intergenic 25.0%
!!! TTACATTTATTTTAGTAGGC+CGG - chr1_3:55266523-55266542 Msa0126300:intron 25.0%
! ACTGATATAGATCAAAATAG+GGG + chr1_3:55266690-55266709 None:intergenic 25.0%
! GACTGATATAGATCAAAATA+GGG + chr1_3:55266691-55266710 None:intergenic 25.0%
!! AATTTTACGGATCAATTGAT+TGG + chr1_3:55266722-55266741 None:intergenic 25.0%
!!! GTTACTTTTGTTTGTTAGAA+TGG - chr1_3:55266875-55266894 Msa0126300:CDS 25.0%
! AGTGATAGAGAATATATCAT+AGG - chr1_3:55267186-55267205 Msa0126300:intron 25.0%
! CTCTATAAAGTCAAAAGAAT+GGG + chr1_3:55267310-55267329 None:intergenic 25.0%
! ACTCTATAAAGTCAAAAGAA+TGG + chr1_3:55267311-55267330 None:intergenic 25.0%
! AGCGTATTAAACTAACTTAT+CGG - chr1_3:55267493-55267512 Msa0126300:intron 25.0%
!! AATTTTCTCAATCTTTTGAG+AGG - chr1_3:55267568-55267587 Msa0126300:intron 25.0%
!!! TTATATTTCTAGTCAACTTG+TGG - chr1_3:55267602-55267621 Msa0126300:intron 25.0%
! TGTGTACATATTGAAACTAT+CGG - chr1_3:55267792-55267811 Msa0126300:intron 25.0%
! AACATTGTACATATACACAT+TGG + chr1_3:55267839-55267858 None:intergenic 25.0%
!! TTTTTCTTAATCTTGGTCAT+TGG - chr1_3:55267876-55267895 Msa0126300:intron 25.0%
!!! TAGCATAGTAGAATTTTGAT+AGG - chr1_3:55267932-55267951 Msa0126300:intron 25.0%
! CAATATTATGGAGAAAATTG+AGG + chr1_3:55268007-55268026 None:intergenic 25.0%
! TTCTCCATAATATTGTTAAC+TGG - chr1_3:55268012-55268031 Msa0126300:intron 25.0%
! GTTTCATATGAATGATAGAA+CGG - chr1_3:55268051-55268070 Msa0126300:intron 25.0%
! TTTCATATGAATGATAGAAC+GGG - chr1_3:55268052-55268071 Msa0126300:intron 25.0%
! TTCTTTCACTATGAAGATAT+GGG - chr1_3:55268263-55268282 Msa0126300:intron 25.0%
GAGAAGAAAGATGGTTAAAT+AGG + chr1_3:55265103-55265122 None:intergenic 30.0%
AAGAATTGGAACCAATGAAA+TGG + chr1_3:55265145-55265164 None:intergenic 30.0%
TGTATTCACTCTTATCCTTT+CGG - chr1_3:55265200-55265219 Msa0126300:three_prime_UTR 30.0%
!! GAATTCCTTTGTTGTTGTTA+TGG - chr1_3:55265262-55265281 Msa0126300:three_prime_UTR 30.0%
GATATCCATAACAACAACAA+AGG + chr1_3:55265270-55265289 None:intergenic 30.0%
! TGTTGTTGTTATGGATATCT+TGG - chr1_3:55265271-55265290 Msa0126300:three_prime_UTR 30.0%
! GTTGTTGTTATGGATATCTT+GGG - chr1_3:55265272-55265291 Msa0126300:three_prime_UTR 30.0%
TTGAGCCTAATAACTATTCT+TGG - chr1_3:55265381-55265400 Msa0126300:three_prime_UTR 30.0%
GTACTCCAAGAATAGTTATT+AGG + chr1_3:55265389-55265408 None:intergenic 30.0%
! CTTTTAATCAAATGCGTGTT+TGG - chr1_3:55265519-55265538 Msa0126300:CDS 30.0%
TTTAATCAAATGCGTGTTTG+GGG - chr1_3:55265521-55265540 Msa0126300:CDS 30.0%
CATGTGGTTATTGTTTCATA+TGG - chr1_3:55265570-55265589 Msa0126300:CDS 30.0%
TGTGGTTATTGTTTCATATG+GGG - chr1_3:55265572-55265591 Msa0126300:CDS 30.0%
!! CAAAATTTGTGTAAGTTGGT+TGG - chr1_3:55265723-55265742 Msa0126300:CDS 30.0%
AATTATAGTCTGGTATGACT+TGG - chr1_3:55266052-55266071 Msa0126300:intron 30.0%
!!! GTAGGCTTAAAAAGCTTTTT+TGG - chr1_3:55266550-55266569 Msa0126300:intron 30.0%
GGACTGATATAGATCAAAAT+AGG + chr1_3:55266692-55266711 None:intergenic 30.0%
GATCAATTGATTGGTACAAA+AGG + chr1_3:55266713-55266732 None:intergenic 30.0%
! GATCGAGAATGTTCAAATTT+TGG - chr1_3:55266761-55266780 Msa0126300:intron 30.0%
TTAATTATCCATGGACACTA+TGG + chr1_3:55267356-55267375 None:intergenic 30.0%
TAATATAGATCTACCCGTTT+AGG + chr1_3:55267682-55267701 None:intergenic 30.0%
!! AATTCTACTATGCTAGCTTT+CGG + chr1_3:55267927-55267946 None:intergenic 30.0%
GATGCCAGTTAACAATATTA+TGG + chr1_3:55268019-55268038 None:intergenic 30.0%
! CCATCTTTTCTTGATTTAAC+TGG + chr1_3:55268218-55268237 None:intergenic 30.0%
CCAGTTAAATCAAGAAAAGA+TGG - chr1_3:55268215-55268234 Msa0126300:intron 30.0%
GTTCTTTCACTATGAAGATA+TGG - chr1_3:55268262-55268281 Msa0126300:intron 30.0%
TACGTACGTATAAGAAAGAA+AGG - chr1_3:55268360-55268379 Msa0126300:CDS 30.0%
ACGTACGTATAAGAAAGAAA+GGG - chr1_3:55268361-55268380 Msa0126300:CDS 30.0%
TATAAGAAAGAAAGGGATTC+CGG - chr1_3:55268368-55268387 Msa0126300:CDS 30.0%
!! TTTCTTTTTGTTTCTTGTCG+AGG - chr1_3:55268680-55268699 Msa0126300:CDS 30.0%
!!! CAGCTTTTTAAGTGGAAATA+TGG - chr1_3:55268818-55268837 Msa0126300:CDS 30.0%
! GATAGTTTTCAAAGAGTCAT+TGG - chr1_3:55268996-55269015 Msa0126300:five_prime_UTR 30.0%
AACGTTCCTCAATTTCCTAT+TGG - chr1_3:55265012-55265031 Msa0126300:three_prime_UTR 35.0%
ACGTTCCTCAATTTCCTATT+GGG - chr1_3:55265013-55265032 Msa0126300:three_prime_UTR 35.0%
GAATACCCAATAGGAAATTG+AGG + chr1_3:55265021-55265040 None:intergenic 35.0%
GCTGTAATTGAATACCCAAT+AGG + chr1_3:55265030-55265049 None:intergenic 35.0%
TTCCTCTGTTTCCATTTCAT+TGG - chr1_3:55265131-55265150 Msa0126300:three_prime_UTR 35.0%
AACCAATGAAATGGAAACAG+AGG + chr1_3:55265136-55265155 None:intergenic 35.0%
! TGTTATTGTTGTTGGAAGTG+TGG + chr1_3:55265168-55265187 None:intergenic 35.0%
! GCGATTGTTGTTATTGTTGT+TGG + chr1_3:55265176-55265195 None:intergenic 35.0%
TTACATTCATAGCTCCACTT+TGG - chr1_3:55265303-55265322 Msa0126300:three_prime_UTR 35.0%
AAGATAACAGCAATCCAAAG+TGG + chr1_3:55265320-55265339 None:intergenic 35.0%
! CTTTGGATTGCTGTTATCTT+CGG - chr1_3:55265320-55265339 Msa0126300:three_prime_UTR 35.0%
! TCTTCAAGTTTCGAATTCCT+TGG - chr1_3:55265414-55265433 Msa0126300:three_prime_UTR 35.0%
!! AGCTCTGAATCATTAAACCA+AGG + chr1_3:55265434-55265453 None:intergenic 35.0%
ATTAAAAACGAACCTGGTTG+CGG + chr1_3:55265483-55265502 None:intergenic 35.0%
! AAGTTGGTTGGAGAAAAAGA+TGG - chr1_3:55265735-55265754 Msa0126300:CDS 35.0%
TTAGATGATACTTGCGTGTT+CGG - chr1_3:55265870-55265889 Msa0126300:intron 35.0%
TCAAACTGAACCGTACTAAA+CGG - chr1_3:55266092-55266111 Msa0126300:intron 35.0%
AAAGCAATTGAACTATGACC+TGG - chr1_3:55266204-55266223 Msa0126300:intron 35.0%
!! ATATGCTCTAAAGACGTGTT+AGG + chr1_3:55266288-55266307 None:intergenic 35.0%
!!! GGCTTAAAAAGCTTTTTTGG+TGG - chr1_3:55266553-55266572 Msa0126300:intron 35.0%
CCTATTTAGCTAAACAGATC+AGG + chr1_3:55266586-55266605 None:intergenic 35.0%
CCTGATCTGTTTAGCTAAAT+AGG - chr1_3:55266583-55266602 Msa0126300:intron 35.0%
ATCAAAATAGGGGTGAGAAT+AGG + chr1_3:55266680-55266699 None:intergenic 35.0%
GATCCGTAAAATTGTACAGT+AGG - chr1_3:55266729-55266748 Msa0126300:intron 35.0%
! GTGCCTACTGTACAATTTTA+CGG + chr1_3:55266735-55266754 None:intergenic 35.0%
! AGTTGGTTAGGGATTTCTTT+TGG - chr1_3:55266945-55266964 Msa0126300:intron 35.0%
! GTTGGTTAGGGATTTCTTTT+GGG - chr1_3:55266946-55266965 Msa0126300:intron 35.0%
!!! TCTTTTGGGATGATGAGTTT+CGG - chr1_3:55266960-55266979 Msa0126300:intron 35.0%
! TTCAACTATTCAAGAGTGTG+AGG - chr1_3:55267012-55267031 Msa0126300:intron 35.0%
GGTTTACAACACAAAACACA+AGG + chr1_3:55267088-55267107 None:intergenic 35.0%
TTACTTCGTAGTCATAGCTA+AGG + chr1_3:55267109-55267128 None:intergenic 35.0%
TCTCTATCACTGCAAAAGAA+GGG + chr1_3:55267177-55267196 None:intergenic 35.0%
TTCTCTATCACTGCAAAAGA+AGG + chr1_3:55267178-55267197 None:intergenic 35.0%
ATATCATAGGTCGTCGAATT+TGG - chr1_3:55267199-55267218 Msa0126300:intron 35.0%
TATCATAGGTCGTCGAATTT+GGG - chr1_3:55267200-55267219 Msa0126300:intron 35.0%
AACTTACTACTGTGTGACTA+AGG - chr1_3:55267233-55267252 Msa0126300:intron 35.0%
CAATTGACATGTCCATAGAA+GGG + chr1_3:55267271-55267290 None:intergenic 35.0%
CCTAGTTGGTTAATTATCCA+TGG + chr1_3:55267365-55267384 None:intergenic 35.0%
CCATGGATAATTAACCAACT+AGG - chr1_3:55267362-55267381 Msa0126300:intron 35.0%
TGATGAAAAAGCTACCTAGT+TGG + chr1_3:55267379-55267398 None:intergenic 35.0%
TAAACTGTCAATTACCTGCA+CGG + chr1_3:55267720-55267739 None:intergenic 35.0%
TCACACTTATACCTTGCAAT+TGG - chr1_3:55267966-55267985 Msa0126300:intron 35.0%
CATCATTTGTACCAATTGCA+AGG + chr1_3:55267980-55267999 None:intergenic 35.0%
CTTGCAATTGGTACAAATGA+TGG - chr1_3:55267978-55267997 Msa0126300:intron 35.0%
! AACTGGCATCTTAGTGATTT+TGG - chr1_3:55268029-55268048 Msa0126300:intron 35.0%
! TTTTCTACATGGTATGCCAA+AGG - chr1_3:55268112-55268131 Msa0126300:intron 35.0%
TTATTAGCACATGCTGACAA+TGG + chr1_3:55268398-55268417 None:intergenic 35.0%
! ATACCTAAGCTTCTAGTTGT+TGG - chr1_3:55268536-55268555 Msa0126300:intron 35.0%
AAACCATTTCTCTTGAACCA+TGG + chr1_3:55268764-55268783 None:intergenic 35.0%
!! TGATGATGCAGCTTTTTAAG+TGG - chr1_3:55268810-55268829 Msa0126300:CDS 35.0%
! TGTTGGAAGTGTGGAAGAAT+TGG + chr1_3:55265159-55265178 None:intergenic 40.0%
ATTGTTCTGCTGTTGTTCCT+CGG + chr1_3:55265231-55265250 None:intergenic 40.0%
GTGGAGCTATGAATGTAACA+AGG + chr1_3:55265301-55265320 None:intergenic 40.0%
!! GTTATCTTCGGTGTTGTTGT+TGG - chr1_3:55265332-55265351 Msa0126300:three_prime_UTR 40.0%
TTAGGCTCAATAGCCCATTT+GGG + chr1_3:55265371-55265390 None:intergenic 40.0%
ATTAGGCTCAATAGCCCATT+TGG + chr1_3:55265372-55265391 None:intergenic 40.0%
! TTCTGGTGGTGAAAGTGAAA+AGG - chr1_3:55265668-55265687 Msa0126300:CDS 40.0%
! TCTGGTGGTGAAAGTGAAAA+GGG - chr1_3:55265669-55265688 Msa0126300:CDS 40.0%
GTGAAAGTGAAAAGGGATTG+AGG - chr1_3:55265676-55265695 Msa0126300:CDS 40.0%
TTGGTTGGAGAAAAAGATGG+TGG - chr1_3:55265738-55265757 Msa0126300:CDS 40.0%
CAAGCTTGGTAAGTCATGTT+TGG + chr1_3:55265798-55265817 None:intergenic 40.0%
CAAACATGACTTACCAAGCT+TGG - chr1_3:55265796-55265815 Msa0126300:CDS 40.0%
CAGGAGTAAGAAATACCTCT+TGG + chr1_3:55265830-55265849 None:intergenic 40.0%
GTCAGTCTAGTGATGAGAAT+TGG - chr1_3:55265985-55266004 Msa0126300:intron 40.0%
!!! CGGTTTTGAACCGTTTAGTA+CGG + chr1_3:55266105-55266124 None:intergenic 40.0%
CGTACTAAACGGTTCAAAAC+CGG - chr1_3:55266103-55266122 Msa0126300:intron 40.0%
GTGTCTGTTCACAGTTAAAC+CGG + chr1_3:55266125-55266144 None:intergenic 40.0%
CCTACATTGGGTTATTTGAG+CGG - chr1_3:55266147-55266166 Msa0126300:intron 40.0%
GACGTGTTAGGTATCAGAAT+AGG + chr1_3:55266276-55266295 None:intergenic 40.0%
!! GCTTTTTAAGCCTACTAGAC+CGG + chr1_3:55266545-55266564 None:intergenic 40.0%
GCTTAGCTTAGGTTAAGCTT+AGG + chr1_3:55266632-55266651 None:intergenic 40.0%
CTTAACCTAAGCTAAGCCAT+AGG - chr1_3:55266635-55266654 Msa0126300:intron 40.0%
AGAAACCTATGGCTTAGCTT+AGG + chr1_3:55266643-55266662 None:intergenic 40.0%
AGCCATAGGTTTCTGTCAAT+CGG - chr1_3:55266649-55266668 Msa0126300:intron 40.0%
AAGAAATCCCTAACCAACTC+AGG + chr1_3:55266944-55266963 None:intergenic 40.0%
ATGTCCATAGAAGGGAAACT+GGG + chr1_3:55267263-55267282 None:intergenic 40.0%
GCAATTGACATGTCCATAGA+AGG + chr1_3:55267272-55267291 None:intergenic 40.0%
GAATGGGCAACTTAATCTCA+TGG + chr1_3:55267294-55267313 None:intergenic 40.0%
AGATATTGCCATAGTGTCCA+TGG - chr1_3:55267345-55267364 Msa0126300:intron 40.0%
TGGCGTATTTCACTTCTTCA+GGG - chr1_3:55267622-55267641 Msa0126300:intron 40.0%
ATGAAGATATGGGCATACCT+TGG - chr1_3:55268273-55268292 Msa0126300:CDS 40.0%
TGAAGATATGGGCATACCTT+GGG - chr1_3:55268274-55268293 Msa0126300:CDS 40.0%
TCCAGGATCAAACTTCTTGA+CGG + chr1_3:55268339-55268358 None:intergenic 40.0%
TTCTTATACGTACGTAGTCC+AGG + chr1_3:55268356-55268375 None:intergenic 40.0%
TCTTCTGATGACAAACCGAT+CGG - chr1_3:55268506-55268525 Msa0126300:intron 40.0%
TATTCCAAATACAACCGCCT+TGG + chr1_3:55268606-55268625 None:intergenic 40.0%
! TTGTATTTGGAATAGCCCGA+CGG - chr1_3:55268612-55268631 Msa0126300:CDS 40.0%
! TTCCGAATTTTCCAAACCGT+CGG + chr1_3:55268631-55268650 None:intergenic 40.0%
GTTTCTTGTCGAGGAAATAC+CGG - chr1_3:55268689-55268708 Msa0126300:CDS 40.0%
TTGTATCAAATTGGCAGCCA+TGG - chr1_3:55268744-55268763 Msa0126300:CDS 40.0%
TTATCCTTTCGGTTTCACCG+AGG - chr1_3:55265211-55265230 Msa0126300:three_prime_UTR 45.0%
!! TCTTCGGTGTTGTTGTTGGT+TGG - chr1_3:55265336-55265355 Msa0126300:three_prime_UTR 45.0%
!! CTTCGGTGTTGTTGTTGGTT+GGG - chr1_3:55265337-55265356 Msa0126300:three_prime_UTR 45.0%
TTGGGCTTGGAAACCCAAAT+GGG - chr1_3:55265355-55265374 Msa0126300:three_prime_UTR 45.0%
TCAGAGCTTCAAAACCAACC+TGG - chr1_3:55265446-55265465 Msa0126300:CDS 45.0%
GCTTCAAAACCAACCTGGTT+TGG - chr1_3:55265451-55265470 Msa0126300:CDS 45.0%
CACATGTGTCAGTGTTGTGT+TGG + chr1_3:55265556-55265575 None:intergenic 45.0%
CAACACAACACTGACACATG+TGG - chr1_3:55265554-55265573 Msa0126300:CDS 45.0%
TTGTTTCATATGGGGCAGTG+TGG - chr1_3:55265580-55265599 Msa0126300:CDS 45.0%
! GGGATTGAGGAGTATAGTGA+CGG - chr1_3:55265689-55265708 Msa0126300:CDS 45.0%
!! AAAAAGATGGTGGACCAGCT+TGG - chr1_3:55265748-55265767 Msa0126300:CDS 45.0%
ACCAGCTTGGATTCAGATGA+TGG - chr1_3:55265761-55265780 Msa0126300:CDS 45.0%
TCCATCATCTGAATCCAAGC+TGG + chr1_3:55265765-55265784 None:intergenic 45.0%
TGCGTGTTCGGTTATCTAGT+TGG - chr1_3:55265882-55265901 Msa0126300:intron 45.0%
ATCCTAAGTTGTTCTCGGCT+TGG + chr1_3:55266011-55266030 None:intergenic 45.0%
TGAACAGACACTGCCTACAT+TGG - chr1_3:55266134-55266153 Msa0126300:intron 45.0%
GAACAGACACTGCCTACATT+GGG - chr1_3:55266135-55266154 Msa0126300:intron 45.0%
CCGCTCAAATAACCCAATGT+AGG + chr1_3:55266150-55266169 None:intergenic 45.0%
TTATTTGAGCGGTTCAACCG+TGG - chr1_3:55266158-55266177 Msa0126300:intron 45.0%
! TTTTAGTAGGCCGGTCTAGT+AGG - chr1_3:55266532-55266551 Msa0126300:intron 45.0%
AGCTAAACAGATCAGGCTAC+TGG + chr1_3:55266579-55266598 None:intergenic 45.0%
GACCGATTGACAGAAACCTA+TGG + chr1_3:55266654-55266673 None:intergenic 45.0%
ACCACAGTATCGCAGTAGAA+CGG - chr1_3:55266901-55266920 Msa0126300:CDS 45.0%
! ATTCAAGAGTGTGAGGTCAC+TGG - chr1_3:55267019-55267038 Msa0126300:intron 45.0%
TGAGGTCACTGGAACAATGA+TGG - chr1_3:55267030-55267049 Msa0126300:CDS 45.0%
! TGGAACAATGATGGTGCAGT+GGG - chr1_3:55267039-55267058 Msa0126300:CDS 45.0%
TATGCCCAGTTTCCCTTCTA+TGG - chr1_3:55267256-55267275 Msa0126300:intron 45.0%
CATGTCCATAGAAGGGAAAC+TGG + chr1_3:55267264-55267283 None:intergenic 45.0%
GTACTGCAAAGTATGCTGCA+TGG - chr1_3:55267443-55267462 Msa0126300:intron 45.0%
GTGGCGTATTTCACTTCTTC+AGG - chr1_3:55267621-55267640 Msa0126300:intron 45.0%
TACCTTGTTCCTCCATACCA+AGG - chr1_3:55267647-55267666 Msa0126300:intron 45.0%
CAAGGCAGAGCAAACCTAAA+CGG - chr1_3:55267665-55267684 Msa0126300:intron 45.0%
AAGGCAGAGCAAACCTAAAC+GGG - chr1_3:55267666-55267685 Msa0126300:intron 45.0%
! TCAAGCTTTTGTATCCGTGC+AGG - chr1_3:55267703-55267722 Msa0126300:intron 45.0%
ACACGCATCTGTTGCATATG+TGG - chr1_3:55268191-55268210 Msa0126300:intron 45.0%
ACACTTCACATGAAGTCAGC+TGG + chr1_3:55268241-55268260 None:intergenic 45.0%
! TGCTGATTACGTGAGATCTG+TGG - chr1_3:55268442-55268461 Msa0126300:intron 45.0%
TTCAGTCTCCAACAGGTTAC+CGG + chr1_3:55268477-55268496 None:intergenic 45.0%
! CCTGATTTTCAGTCTCCAAC+AGG + chr1_3:55268484-55268503 None:intergenic 45.0%
CCTGTTGGAGACTGAAAATC+AGG - chr1_3:55268481-55268500 Msa0126300:intron 45.0%
CTTCTGATGACAAACCGATC+GGG - chr1_3:55268507-55268526 Msa0126300:intron 45.0%
TTAGGTATGCTTCTCCCGAT+CGG + chr1_3:55268524-55268543 None:intergenic 45.0%
! CCTAAGCTTCTAGTTGTTGG+CGG - chr1_3:55268539-55268558 Msa0126300:intron 45.0%
! TCCGAATTTTCCAAACCGTC+GGG + chr1_3:55268630-55268649 None:intergenic 45.0%
! GACGGTTTGGAAAATTCGGA+AGG - chr1_3:55268630-55268649 Msa0126300:CDS 45.0%
GGTTTGGAAAATTCGGAAGG+AGG - chr1_3:55268633-55268652 Msa0126300:CDS 45.0%
CTCTACTGCCACAACTTACT+TGG + chr1_3:55268718-55268737 None:intergenic 45.0%
CAGCCATGGTTCAAGAGAAA+TGG - chr1_3:55268758-55268777 Msa0126300:CDS 45.0%
!!! ATTAAAAAACAATTTTATTA+TGG - chr1_3:55267899-55267918 Msa0126300:intron 5.0%
TGTTCCTCGGTGAAACCGAA+AGG + chr1_3:55265218-55265237 None:intergenic 50.0%
! GTGTTGTTGTTGGTTGGGCT+TGG - chr1_3:55265342-55265361 Msa0126300:three_prime_UTR 50.0%
GTTGGGCTTGGAAACCCAAA+TGG - chr1_3:55265354-55265373 Msa0126300:three_prime_UTR 50.0%
! CGGAGTATTCCAAACCAGGT+TGG + chr1_3:55265463-55265482 None:intergenic 50.0%
! GTTGCGGAGTATTCCAAACC+AGG + chr1_3:55265467-55265486 None:intergenic 50.0%
! GTTTGGAATACTCCGCAACC+AGG - chr1_3:55265468-55265487 Msa0126300:CDS 50.0%
CATGTCACGTGCAGTTCTTC+TGG - chr1_3:55265651-55265670 Msa0126300:CDS 50.0%
TGACTTACCAAGCTTGGCGT+AGG - chr1_3:55265802-55265821 Msa0126300:CDS 50.0%
GACTTACCAAGCTTGGCGTA+GGG - chr1_3:55265803-55265822 Msa0126300:CDS 50.0%
!!! GTTCAACCGTGGTTTTGTCC+AGG - chr1_3:55266169-55266188 Msa0126300:intron 50.0%
CTCGAACCTGGACAAAACCA+CGG + chr1_3:55266178-55266197 None:intergenic 50.0%
!!! TGGTTTTGTCCAGGTTCGAG+CGG - chr1_3:55266178-55266197 Msa0126300:intron 50.0%
! TGCTTTAAACCGCTCGAACC+TGG + chr1_3:55266190-55266209 None:intergenic 50.0%
CTATGACCTGGAGTTCTCAC+CGG - chr1_3:55266216-55266235 Msa0126300:intron 50.0%
!! AGTTCTCACCGGCTTGGTTT+CGG - chr1_3:55266227-55266246 Msa0126300:intron 50.0%
ATCCAAACCCGAAACCAAGC+CGG + chr1_3:55266238-55266257 None:intergenic 50.0%
! TAGGGTGCTCTCAACGAACT+TGG + chr1_3:55266804-55266823 None:intergenic 50.0%
GTTCTACTGCGATACTGTGG+TGG + chr1_3:55266902-55266921 None:intergenic 50.0%
ACCGTTCTACTGCGATACTG+TGG + chr1_3:55266905-55266924 None:intergenic 50.0%
TGAAGATGCGAGTCCTGAGT+TGG - chr1_3:55266928-55266947 Msa0126300:intron 50.0%
!! ATGCGAGTCCTGAGTTGGTT+AGG - chr1_3:55266933-55266952 Msa0126300:intron 50.0%
!! TGCGAGTCCTGAGTTGGTTA+GGG - chr1_3:55266934-55266953 Msa0126300:intron 50.0%
ATGATGAGTTTCGGTCGAGG+TGG - chr1_3:55266969-55266988 Msa0126300:intron 50.0%
TGATGAGTTTCGGTCGAGGT+GGG - chr1_3:55266970-55266989 Msa0126300:intron 50.0%
! CTGGAACAATGATGGTGCAG+TGG - chr1_3:55267038-55267057 Msa0126300:CDS 50.0%
TGCCTTGGTATGGAGGAACA+AGG + chr1_3:55267652-55267671 None:intergenic 50.0%
TTTGCTCTGCCTTGGTATGG+AGG + chr1_3:55267659-55267678 None:intergenic 50.0%
! AGGTTTGCTCTGCCTTGGTA+TGG + chr1_3:55267662-55267681 None:intergenic 50.0%
! CGTTTAGGTTTGCTCTGCCT+TGG + chr1_3:55267667-55267686 None:intergenic 50.0%
CCAAGCTTAGCGATTTCCCA+AGG + chr1_3:55268293-55268312 None:intergenic 50.0%
CCTTGGGAAATCGCTAAGCT+TGG - chr1_3:55268290-55268309 Msa0126300:CDS 50.0%
GCTAAGCTTGGAGTTCGTCA+GGG - chr1_3:55268302-55268321 Msa0126300:CDS 50.0%
TTGGAGTTCGTCAGGGTATG+TGG - chr1_3:55268309-55268328 Msa0126300:CDS 50.0%
TGGAGTTCGTCAGGGTATGT+GGG - chr1_3:55268310-55268329 Msa0126300:CDS 50.0%
GCCGTCAAGAAGTTTGATCC+TGG - chr1_3:55268335-55268354 Msa0126300:CDS 50.0%
ACATGCTGACAATGGAACGC+CGG + chr1_3:55268390-55268409 None:intergenic 50.0%
AGATCTGTGGAAGACTCGAC+CGG - chr1_3:55268455-55268474 Msa0126300:intron 50.0%
CCGCCAACAACTAGAAGCTT+AGG + chr1_3:55268542-55268561 None:intergenic 50.0%
! TTGATCAAGGGTGCAGGCAA+GGG + chr1_3:55268573-55268592 None:intergenic 50.0%
TTGCCTGCACCCTTGATCAA+GGG - chr1_3:55268573-55268592 Msa0126300:intron 50.0%
GGTCACTAGCCCTTGATCAA+GGG + chr1_3:55268585-55268604 None:intergenic 50.0%
TGGTCACTAGCCCTTGATCA+AGG + chr1_3:55268586-55268605 None:intergenic 50.0%
! TGATCAAGGGCTAGTGACCA+AGG - chr1_3:55268586-55268605 Msa0126300:intron 50.0%
GTGACCAAGGCGGTTGTATT+TGG - chr1_3:55268599-55268618 Msa0126300:intron 50.0%
! TTTGGAATAGCCCGACGGTT+TGG - chr1_3:55268617-55268636 Msa0126300:CDS 50.0%
! GCCCGACGGTTTGGAAAATT+CGG - chr1_3:55268626-55268645 Msa0126300:CDS 50.0%
TCTTGTCGAGGAAATACCGG+CGG - chr1_3:55268692-55268711 Msa0126300:CDS 50.0%
GTCACGTGCAGTTCTTCTGG+TGG - chr1_3:55265654-55265673 Msa0126300:CDS 55.0%
GGCCAAGCCGAGAACAACTT+AGG - chr1_3:55266006-55266025 Msa0126300:intron 55.0%
!! GTTCTCACCGGCTTGGTTTC+GGG - chr1_3:55266228-55266247 Msa0126300:intron 55.0%
GGGATGATGAGTTTCGGTCG+AGG - chr1_3:55266966-55266985 Msa0126300:intron 55.0%
CGCTAAGCTTGGAGTTCGTC+AGG - chr1_3:55268301-55268320 Msa0126300:CDS 55.0%
GGAGTTCGTCAGGGTATGTG+GGG - chr1_3:55268311-55268330 Msa0126300:CDS 55.0%
AGACTCGACCGGTAACCTGT+TGG - chr1_3:55268466-55268485 Msa0126300:intron 55.0%
! CTTGATCAAGGGTGCAGGCA+AGG + chr1_3:55268574-55268593 None:intergenic 55.0%
CTTGCCTGCACCCTTGATCA+AGG - chr1_3:55268572-55268591 Msa0126300:intron 55.0%
! TAGCCCTTGATCAAGGGTGC+AGG + chr1_3:55268579-55268598 None:intergenic 55.0%
! TCAAGGGCTAGTGACCAAGG+CGG - chr1_3:55268589-55268608 Msa0126300:intron 55.0%
CTTGGTCCCTACGCCAAGCT+TGG + chr1_3:55265812-55265831 None:intergenic 60.0%
AGCTTGGCGTAGGGACCAAG+AGG - chr1_3:55265812-55265831 Msa0126300:CDS 60.0%
! ACCTGGAGTTCTCACCGGCT+TGG - chr1_3:55266221-55266240 Msa0126300:intron 60.0%
ACCAAGCCGGTGAGAACTCC+AGG + chr1_3:55266225-55266244 None:intergenic 60.0%
!! CACCGGCTTGGTTTCGGGTT+TGG - chr1_3:55266233-55266252 Msa0126300:intron 60.0%
! AAGGGTGCAGGCAAGGGCAA+TGG + chr1_3:55268567-55268586 None:intergenic 60.0%
ACCGGCGGCCAAGTAAGTTG+TGG - chr1_3:55268707-55268726 Msa0126300:CDS 60.0%
GCCACAACTTACTTGGCCGC+CGG + chr1_3:55268711-55268730 None:intergenic 60.0%
GATGGTGCAGTGGGTGCGCA+AGG - chr1_3:55267048-55267067 Msa0126300:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 55265010 55269087 55265010 ID=Msa0126300;Name=Msa0126300
chr1_3 mRNA 55265010 55269087 55265010 ID=Msa0126300-mRNA-1;Parent=Msa0126300;Name=Msa0126300-mRNA-1;_AED=0.09;_eAED=0.09;_QI=244|1|1|1|1|1|6|426|396
chr1_3 exon 55265010 55265878 55265010 ID=Msa0126300-mRNA-1:exon:17152;Parent=Msa0126300-mRNA-1
chr1_3 exon 55266373 55266454 55266373 ID=Msa0126300-mRNA-1:exon:17151;Parent=Msa0126300-mRNA-1
chr1_3 exon 55266843 55266926 55266843 ID=Msa0126300-mRNA-1:exon:17150;Parent=Msa0126300-mRNA-1
chr1_3 exon 55267028 55267204 55267028 ID=Msa0126300-mRNA-1:exon:17149;Parent=Msa0126300-mRNA-1
chr1_3 exon 55268264 55268432 55268264 ID=Msa0126300-mRNA-1:exon:17148;Parent=Msa0126300-mRNA-1
chr1_3 exon 55268608 55269087 55268608 ID=Msa0126300-mRNA-1:exon:17147;Parent=Msa0126300-mRNA-1
chr1_3 five_prime_UTR 55268844 55269087 55268844 ID=Msa0126300-mRNA-1:five_prime_utr;Parent=Msa0126300-mRNA-1
chr1_3 CDS 55268608 55268843 55268608 ID=Msa0126300-mRNA-1:cds;Parent=Msa0126300-mRNA-1
chr1_3 CDS 55268264 55268432 55268264 ID=Msa0126300-mRNA-1:cds;Parent=Msa0126300-mRNA-1
chr1_3 CDS 55267028 55267204 55267028 ID=Msa0126300-mRNA-1:cds;Parent=Msa0126300-mRNA-1
chr1_3 CDS 55266843 55266926 55266843 ID=Msa0126300-mRNA-1:cds;Parent=Msa0126300-mRNA-1
chr1_3 CDS 55266373 55266454 55266373 ID=Msa0126300-mRNA-1:cds;Parent=Msa0126300-mRNA-1
chr1_3 CDS 55265436 55265878 55265436 ID=Msa0126300-mRNA-1:cds;Parent=Msa0126300-mRNA-1
chr1_3 three_prime_UTR 55265010 55265435 55265010 ID=Msa0126300-mRNA-1:three_prime_utr;Parent=Msa0126300-mRNA-1
Gene Sequence

>Msa0126300

ATGTTCGAGAATTCCTTTGTTGTTGTTATGGATATCTTGGGTAACCTTGTTACATTCATAGCTCCACTTTGGATTGCTGTTATCTTCGGTGTTGTTGTTGGTTGGGCTTGGAAACCCAAATGGGCTATTGAGCCTAATAACTATTCTTGGAGTACTAATCTCTTCAAGTTTCGAATTCCTTGGTTTAATGATTCAGAGCTTCAAAACCAACCTGGTTTGGAATACTCCGCAACCAGTTCTTCTGGTGGTGAAAGTGAAAAGGGATTGAGGAGTATAGTGACGGAACATGATTTGCAAAATTTGTGTAAGTTGGTTGGAGAAAAAGATGGTGGACCAGCTTGGATTCAGATGATGGATCGTTCTGCACCAAACATGACTTACCAAGCTTGGCGTAGGGACCAAGAGAATGGACCACCACAGTATCGCAGTAGAACGGTGTTTGAAGATGCGAGTCCTGAGTTGGTTAGGGATTTCTTTTGGGATGATGAGTTTCGGTCGAGGTGGGATGATATGCTTCTACATGCTTCAACTATTCAAGAGTGTGAGGTCACTGGAACAATGATGGTGCAGTGGGTGCGCAAGTTTCCCTTCTTTTGCAGTGATAGAGAATATATCATAGGTCGTCGAATTTGGGATGCAGAGCGAACTTACTACTGTGTGACTAAGGGAGTACCTTGTTCCTCCATACCAAGGCAGAGCAAACCTAAACGGGTAGATCTATATTATTCAAGCTTTTGTATCCGTGCAGTTAAATCAAGAAAAGATGGCCAGCTGACTTCATGTGAAGTGTTGTTCTTTCACTATGAAGATATGGGCATACCTTGGGAAATCGCTAAGCTTGGAGTTCGTCAGGGTATGTGGGGAGCCGTCAAGAAGTTTGATCCTGGACTACGTACGTATAAGAAAGAAAGGGATTCCGGCGTTCCATTGTCAGCATGTGCTAATAACGCTAAAATCAATACTAAAGTAAGTGCTGATTACGTGAGATCTGTGGAAGACTCGACCGGTAACCTGTTGGAGACTGAAAATCAGGATTCTTCTGATGACAAACCGATCGGGAGAAGCATACCTAAGCTTCTAGTTGTTGGCGGAGCCATTGCCCTTGCCTGCACCCTTGATCAAGGGCTAGTGACCAAGGCGGTTGTATTTGGAATAGCCCGACGGTTTGGAAAATTCGGAAGGAGGTTGTGA
Protein sequence

>Msa0126300

MFENSFVVVMDILGNLVTFIAPLWIAVIFGVVVGWAWKPKWAIEPNNYSWSTNLFKFRIPWFNDSELQNQPGLEYSATSSSGGESEKGLRSIVTEHDLQNLCKLVGEKDGGPAWIQMMDRSAPNMTYQAWRRDQENGPPQYRSRTVFEDASPELVRDFFWDDEFRSRWDDMLLHASTIQECEVTGTMMVQWVRKFPFFCSDREYIIGRRIWDAERTYYCVTKGVPCSSIPRQSKPKRVDLYYSSFCIRAVKSRKDGQLTSCEVLFFHYEDMGIPWEIAKLGVRQGMWGAVKKFDPGLRTYKKERDSGVPLSACANNAKINTKVSADYVRSVEDSTGNLLETENQDSSDDKPIGRSIPKLLVVGGAIALACTLDQGLVTKAVVFGIARRFGKFGRRL*