AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0078520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078520 MtrunA17_Chr1g0189151 96.456 395 14 0 1 395 1 395 0.0 790
Msa0078520 MtrunA17_Chr3g0127861 53.771 411 155 5 19 394 14 424 1.71e-161 460
Msa0078520 MtrunA17_Chr5g0395041 42.755 421 200 8 9 390 17 435 4.71e-112 335
Msa0078520 MtrunA17_Chr4g0000091 30.450 289 182 7 91 368 71 351 5.51e-35 132
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078520 AT1G64720.1 61.757 387 126 6 13 395 17 385 1.03e-172 487
Msa0078520 AT5G54170.1 56.013 316 133 4 83 394 120 433 8.19e-123 363
Msa0078520 AT4G14500.1 45.411 414 184 8 15 390 23 432 6.81e-117 347
Msa0078520 AT3G23080.1 43.902 410 198 9 9 390 13 418 7.06e-108 323
Msa0078520 AT3G23080.2 45.013 391 183 9 28 390 1 387 4.32e-104 313
Msa0078520 AT3G23080.3 45.013 391 183 9 28 390 1 387 4.32e-104 313
Msa0078520 AT4G14500.2 40.964 249 108 6 21 230 29 277 4.01e-54 181
Msa0078520 AT3G13062.1 30.159 315 204 8 90 394 82 390 2.92e-39 145
Msa0078520 AT3G13062.2 30.159 315 204 8 90 394 82 390 5.80e-39 145
Msa0078520 AT3G13062.3 29.102 323 205 8 90 394 82 398 5.70e-37 139
Msa0078520 AT1G55960.1 31.126 302 187 9 82 368 73 368 3.10e-35 134
Msa0078520 AT1G55960.2 28.808 302 169 11 82 368 73 343 3.96e-23 100

Find 130 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATCATAGGTCGTCGAATT+TGG 0.185811 1_2:-56118849 Msa0078520:CDS
AGTTGGTTAGGGATTTCTTT+TGG 0.205035 1_2:-56119103 Msa0078520:CDS
GTGACCAAGGCGGTTGTATT+TGG 0.231338 1_2:-56117449 Msa0078520:CDS
TTGAGCCTAATAACTATTCT+TGG 0.254030 1_2:-56120664 Msa0078520:CDS
GTTCTTTCACTATGAAGATA+TGG 0.258130 1_2:-56117786 Msa0078520:CDS
GAATTCCTTTGTTGTTGTTA+TGG 0.286629 1_2:-56120783 Msa0078520:CDS
TAATATAGATCTACCCGTTT+AGG 0.290502 1_2:+56118369 None:intergenic
GTACTCCAAGAATAGTTATT+AGG 0.298005 1_2:+56120659 None:intergenic
TGTTGTTGTTATGGATATCT+TGG 0.306159 1_2:-56120774 Msa0078520:CDS
ATTAGGCTCAATAGCCCATT+TGG 0.314280 1_2:+56120676 None:intergenic
CTTGCCTGCACCCTTGATCA+AGG 0.320705 1_2:-56117476 Msa0078520:CDS
CGCTAAGCTTGGAGTTCGTC+AGG 0.333843 1_2:-56117747 Msa0078520:CDS
GCTTCAAAACCAACCTGGTT+TGG 0.345626 1_2:-56120594 Msa0078520:CDS
CTCTACTGCCACAACTTACT+TGG 0.352156 1_2:+56117333 None:intergenic
ATGCGAGTCCTGAGTTGGTT+AGG 0.358805 1_2:-56119115 Msa0078520:CDS
TTCAGTCTCCAACAGGTTAC+CGG 0.359683 1_2:+56117574 None:intergenic
CTTTGGATTGCTGTTATCTT+CGG 0.360253 1_2:-56120725 Msa0078520:CDS
TATCATAGGTCGTCGAATTT+GGG 0.370573 1_2:-56118848 Msa0078520:CDS
CAGCCATGGTTCAAGAGAAA+TGG 0.370619 1_2:-56117290 Msa0078520:three_prime_UTR
TTCTTTCACTATGAAGATAT+GGG 0.383405 1_2:-56117785 Msa0078520:CDS
CATGAATAATATCAATAATC+AGG 0.390673 1_2:-56117165 Msa0078520:three_prime_UTR
CCTGTTGGAGACTGAAAATC+AGG 0.397121 1_2:-56117567 Msa0078520:CDS
GCCCGACGGTTTGGAAAATT+CGG 0.400471 1_2:-56117422 Msa0078520:CDS
TTTGGAATAGCCCGACGGTT+TGG 0.406644 1_2:-56117431 Msa0078520:CDS
GTGTTGTTGTTGGTTGGGCT+TGG 0.406854 1_2:-56120703 Msa0078520:CDS
GTTGTTGTTATGGATATCTT+GGG 0.415623 1_2:-56120773 Msa0078520:CDS
TATAAGAAAGAAAGGGATTC+CGG 0.417822 1_2:-56117680 Msa0078520:CDS
CGTTTAGGTTTGCTCTGCCT+TGG 0.417964 1_2:+56118384 None:intergenic
CTTCGGTGTTGTTGTTGGTT+GGG 0.423403 1_2:-56120708 Msa0078520:CDS
TTCTCTATCACTGCAAAAGA+AGG 0.424377 1_2:+56118873 None:intergenic
AGGTTTGCTCTGCCTTGGTA+TGG 0.426290 1_2:+56118389 None:intergenic
CAAGGCAGAGCAAACCTAAA+CGG 0.429915 1_2:-56118383 Msa0078520:CDS
TCTTCGGTGTTGTTGTTGGT+TGG 0.430475 1_2:-56120709 Msa0078520:CDS
ATACCTAAGCTTCTAGTTGT+TGG 0.433725 1_2:-56117512 Msa0078520:CDS
TTTGCAAAATTTGTGTAAGT+TGG 0.443993 1_2:-56120329 Msa0078520:CDS
CAAGCTTGGTAAGTCATGTT+TGG 0.447227 1_2:+56120253 None:intergenic
GTTGGGCTTGGAAACCCAAA+TGG 0.449819 1_2:-56120691 Msa0078520:CDS
TTAGGCTCAATAGCCCATTT+GGG 0.450902 1_2:+56120677 None:intergenic
TGGTCACTAGCCCTTGATCA+AGG 0.452319 1_2:+56117465 None:intergenic
TTGGAGTTCGTCAGGGTATG+TGG 0.453950 1_2:-56117739 Msa0078520:CDS
GTTATCTTCGGTGTTGTTGT+TGG 0.454908 1_2:-56120713 Msa0078520:CDS
TCTTCAAGTTTCGAATTCCT+TGG 0.455904 1_2:-56120631 Msa0078520:CDS
CAAAATTTGTGTAAGTTGGT+TGG 0.456209 1_2:-56120325 Msa0078520:CDS
TACGTACGTATAAGAAAGAA+AGG 0.462465 1_2:-56117688 Msa0078520:CDS
AAGGCAGAGCAAACCTAAAC+GGG 0.465305 1_2:-56118382 Msa0078520:CDS
TTCTGGTGGTGAAAGTGAAA+AGG 0.472293 1_2:-56120380 Msa0078520:CDS
TGCGAGTCCTGAGTTGGTTA+GGG 0.472434 1_2:-56119114 Msa0078520:CDS
CTTGATCAAGGGTGCAGGCA+AGG 0.479777 1_2:+56117477 None:intergenic
TTGTATCAAATTGGCAGCCA+TGG 0.482398 1_2:-56117304 Msa0078520:three_prime_UTR
TTACATTCATAGCTCCACTT+TGG 0.487272 1_2:-56120742 Msa0078520:CDS
TTCTTATACGTACGTAGTCC+AGG 0.487357 1_2:+56117695 None:intergenic
ATGAAGATATGGGCATACCT+TGG 0.492383 1_2:-56117775 Msa0078520:CDS
CCGCCAACAACTAGAAGCTT+AGG 0.492437 1_2:+56117509 None:intergenic
CCAGTTAAATCAAGAAAAGA+TGG 0.498146 1_2:-56117833 Msa0078520:intron
TGAAGATATGGGCATACCTT+GGG 0.500114 1_2:-56117774 Msa0078520:CDS
TCCAGGATCAAACTTCTTGA+CGG 0.500862 1_2:+56117712 None:intergenic
GCCGTCAAGAAGTTTGATCC+TGG 0.503459 1_2:-56117713 Msa0078520:CDS
GTTTCTTGTCGAGGAAATAC+CGG 0.506043 1_2:-56117359 Msa0078520:three_prime_UTR
AACTTACTACTGTGTGACTA+AGG 0.511110 1_2:-56118815 Msa0078520:intron
CTTCTGATGACAAACCGATC+GGG 0.515089 1_2:-56117541 Msa0078520:CDS
ACCAGCTTGGATTCAGATGA+TGG 0.516098 1_2:-56120287 Msa0078520:CDS
TTTGCTCTGCCTTGGTATGG+AGG 0.518246 1_2:+56118392 None:intergenic
TTGCCTGCACCCTTGATCAA+GGG 0.518780 1_2:-56117475 Msa0078520:CDS
CCTTGGGAAATCGCTAAGCT+TGG 0.519071 1_2:-56117758 Msa0078520:CDS
CCTAAGCTTCTAGTTGTTGG+CGG 0.520168 1_2:-56117509 Msa0078520:CDS
TGGAGTTCGTCAGGGTATGT+GGG 0.522164 1_2:-56117738 Msa0078520:CDS
ATTCAAGAGTGTGAGGTCAC+TGG 0.523985 1_2:-56119029 Msa0078520:CDS
TTGATCAAGGGTGCAGGCAA+GGG 0.525896 1_2:+56117478 None:intergenic
CTTGGTCCCTACGCCAAGCT+TGG 0.528324 1_2:+56120239 None:intergenic
AAACCATTTCTCTTGAACCA+TGG 0.533240 1_2:+56117287 None:intergenic
TTAGGTATGCTTCTCCCGAT+CGG 0.542706 1_2:+56117527 None:intergenic
CAAACATGACTTACCAAGCT+TGG 0.544826 1_2:-56120252 Msa0078520:CDS
GGTCACTAGCCCTTGATCAA+GGG 0.548340 1_2:+56117466 None:intergenic
TCTGGTGGTGAAAGTGAAAA+GGG 0.549404 1_2:-56120379 Msa0078520:CDS
AGTGATAGAGAATATATCAT+AGG 0.553664 1_2:-56118862 Msa0078520:CDS
GGGATGATGAGTTTCGGTCG+AGG 0.555696 1_2:-56119082 Msa0078520:CDS
TAGCCCTTGATCAAGGGTGC+AGG 0.555894 1_2:+56117472 None:intergenic
TTGGGCTTGGAAACCCAAAT+GGG 0.556004 1_2:-56120690 Msa0078520:CDS
GTTTGGAATACTCCGCAACC+AGG 0.561804 1_2:-56120577 Msa0078520:intron
AAGGGTGCAGGCAAGGGCAA+TGG 0.563247 1_2:+56117484 None:intergenic
GTGAAAGTGAAAAGGGATTG+AGG 0.563385 1_2:-56120372 Msa0078520:CDS
TGATGAGTTTCGGTCGAGGT+GGG 0.565414 1_2:-56119078 Msa0078520:CDS
GACTTACCAAGCTTGGCGTA+GGG 0.568038 1_2:-56120245 Msa0078520:CDS
GACGGTTTGGAAAATTCGGA+AGG 0.568472 1_2:-56117418 Msa0078520:CDS
AAGAAATCCCTAACCAACTC+AGG 0.569522 1_2:+56119107 None:intergenic
ACACTTCACATGAAGTCAGC+TGG 0.570067 1_2:+56117810 None:intergenic
TGACTTACCAAGCTTGGCGT+AGG 0.571589 1_2:-56120246 Msa0078520:CDS
CGGAGTATTCCAAACCAGGT+TGG 0.575515 1_2:+56120585 None:intergenic
ATGATGAGTTTCGGTCGAGG+TGG 0.576909 1_2:-56119079 Msa0078520:CDS
TCCATCATCTGAATCCAAGC+TGG 0.578196 1_2:+56120286 None:intergenic
TATTCCAAATACAACCGCCT+TGG 0.579315 1_2:+56117445 None:intergenic
TCTCTATCACTGCAAAAGAA+GGG 0.579682 1_2:+56118874 None:intergenic
GCCACAACTTACTTGGCCGC+CGG 0.581389 1_2:+56117340 None:intergenic
AGACTCGACCGGTAACCTGT+TGG 0.583874 1_2:-56117582 Msa0078520:CDS
TCTTCTGATGACAAACCGAT+CGG 0.596047 1_2:-56117542 Msa0078520:CDS
GGTTTGGAAAATTCGGAAGG+AGG 0.596932 1_2:-56117415 Msa0078520:CDS
GTTGCGGAGTATTCCAAACC+AGG 0.600622 1_2:+56120581 None:intergenic
AAGATAACAGCAATCCAAAG+TGG 0.602074 1_2:+56120728 None:intergenic
TGAAGATGCGAGTCCTGAGT+TGG 0.613594 1_2:-56119120 Msa0078520:CDS
TCAGAGCTTCAAAACCAACC+TGG 0.614875 1_2:-56120599 Msa0078520:CDS
CCAAGCTTAGCGATTTCCCA+AGG 0.615945 1_2:+56117758 None:intergenic
GATGGTGCAGTGGGTGCGCA+AGG 0.620411 1_2:-56119000 Msa0078520:intron
TAAACTGTCAATTACCTGCA+CGG 0.621201 1_2:+56118331 None:intergenic
ACGTACGTATAAGAAAGAAA+GGG 0.623052 1_2:-56117687 Msa0078520:CDS
ACCGGCGGCCAAGTAAGTTG+TGG 0.623145 1_2:-56117341 Msa0078520:three_prime_UTR
CTGGAACAATGATGGTGCAG+TGG 0.625357 1_2:-56119010 Msa0078520:CDS
GATATCCATAACAACAACAA+AGG 0.628535 1_2:+56120778 None:intergenic
TGAGGTCACTGGAACAATGA+TGG 0.628803 1_2:-56119018 Msa0078520:CDS
AGATCTGTGGAAGACTCGAC+CGG 0.630222 1_2:-56117593 Msa0078520:CDS
TTATTAGCACATGCTGACAA+TGG 0.637025 1_2:+56117653 None:intergenic
TGATCAAGGGCTAGTGACCA+AGG 0.638516 1_2:-56117462 Msa0078520:CDS
GGGATTGAGGAGTATAGTGA+CGG 0.640769 1_2:-56120359 Msa0078520:CDS
ACCGTTCTACTGCGATACTG+TGG 0.641157 1_2:+56119146 None:intergenic
TTCAACTATTCAAGAGTGTG+AGG 0.641287 1_2:-56119036 Msa0078520:CDS
ACCACAGTATCGCAGTAGAA+CGG 0.641569 1_2:-56119147 Msa0078520:CDS
TGGAACAATGATGGTGCAGT+GGG 0.643324 1_2:-56119009 Msa0078520:CDS
CATGTCACGTGCAGTTCTGG+TGG 0.645188 1_2:-56120394 Msa0078520:intron
GTTCTACTGCGATACTGTGG+TGG 0.646637 1_2:+56119149 None:intergenic
GGAGTTCGTCAGGGTATGTG+GGG 0.647398 1_2:-56117737 Msa0078520:CDS
AGCTTGGCGTAGGGACCAAG+AGG 0.653449 1_2:-56120236 Msa0078520:intron
AGCTCTGAATCATTAAACCA+AGG 0.662274 1_2:+56120614 None:intergenic
ACATGCTGACAATGGAACGC+CGG 0.666475 1_2:+56117661 None:intergenic
TACCTTGTTCCTCCATACCA+AGG 0.669373 1_2:-56118401 Msa0078520:CDS
GCTAAGCTTGGAGTTCGTCA+GGG 0.670012 1_2:-56117746 Msa0078520:CDS
TGCTGATTACGTGAGATCTG+TGG 0.675039 1_2:-56117606 Msa0078520:CDS
TTGTATTTGGAATAGCCCGA+CGG 0.676217 1_2:-56117436 Msa0078520:CDS
GTGGAGCTATGAATGTAACA+AGG 0.685832 1_2:+56120747 None:intergenic
TCTTGTCGAGGAAATACCGG+CGG 0.694884 1_2:-56117356 Msa0078520:three_prime_UTR
TGCCTTGGTATGGAGGAACA+AGG 0.712864 1_2:+56118399 None:intergenic
TCAAGGGCTAGTGACCAAGG+CGG 0.799326 1_2:-56117459 Msa0078520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATAAAATTATAGTC+TGG - chr1_2:56117768-56117787 Msa0078520:CDS 10.0%
!! TTGTAAAATAGAATTTAAAT+AGG + chr1_2:56118105-56118124 None:intergenic 10.0%
!! TTTATTACTATTACTATTAT+TGG + chr1_2:56118220-56118239 None:intergenic 10.0%
!! TAATAGCTAATATATTAAAT+AGG + chr1_2:56119262-56119281 None:intergenic 10.0%
!! AATAATAATTCAATGAAATC+AGG + chr1_2:56117575-56117594 None:intergenic 15.0%
!! ATAATTTAAGCAACTAAAAT+TGG + chr1_2:56117650-56117669 None:intergenic 15.0%
!!! CACTATTTAAATATTGATTT+AGG - chr1_2:56118128-56118147 Msa0078520:intron 15.0%
!! GTTTAAATTATTGAAAATGT+TGG - chr1_2:56118158-56118177 Msa0078520:intron 15.0%
!!! CATTTTACATTTATTTTAGT+AGG - chr1_2:56118245-56118264 Msa0078520:intron 15.0%
!! CTTATTAATTTAAGTAATTG+TGG - chr1_2:56119873-56119892 Msa0078520:intron 15.0%
!! ATTTAGTTGCTAAAATTGTA+GGG + chr1_2:56118548-56118567 None:intergenic 20.0%
!! AATTTAGTTGCTAAAATTGT+AGG + chr1_2:56118549-56118568 None:intergenic 20.0%
!! TTTCATCAACATTGTTATAA+TGG - chr1_2:56119117-56119136 Msa0078520:CDS 20.0%
!!! CAATTCATTTTTCTTAATCT+TGG - chr1_2:56119595-56119614 Msa0078520:intron 20.0%
!!! CATTTTTTTTCTTTTCTACA+TGG - chr1_2:56119827-56119846 Msa0078520:intron 20.0%
!! TAAGAATTTAATGATTCCTT+TGG + chr1_2:56119857-56119876 None:intergenic 20.0%
!!! GAGTTTATTTTGTATCAAAT+TGG - chr1_2:56120461-56120480 Msa0078520:intron 20.0%
!! CATGAATAATATCAATAATC+AGG - chr1_2:56120609-56120628 Msa0078520:CDS 20.0%
! AATGATATTAAAAACGAACC+TGG + chr1_2:56117218-56117237 None:intergenic 25.0%
!! TTTTAATCAAATGCGTGTTT+GGG - chr1_2:56117249-56117268 Msa0078520:three_prime_UTR 25.0%
! ATGTGGTTATTGTTTCATAT+GGG - chr1_2:56117300-56117319 Msa0078520:three_prime_UTR 25.0%
! TTTGCAAAATTTGTGTAAGT+TGG - chr1_2:56117445-56117464 Msa0078520:CDS 25.0%
! TATTTATCCTAAGTTGTTCT+CGG + chr1_2:56117742-56117761 None:intergenic 25.0%
!!! ATTGGATTAGATTTTGTATG+TGG + chr1_2:56118202-56118221 None:intergenic 25.0%
!!! TTACATTTATTTTAGTAGGC+CGG - chr1_2:56118249-56118268 Msa0078520:intron 25.0%
! ACTGATATAGATCAAAATAG+GGG + chr1_2:56118416-56118435 None:intergenic 25.0%
! GACTGATATAGATCAAAATA+GGG + chr1_2:56118417-56118436 None:intergenic 25.0%
!! AATTTTACGGATCAATTGAT+TGG + chr1_2:56118448-56118467 None:intergenic 25.0%
!!! GTTACTTTTGTTTGTTAGAA+TGG - chr1_2:56118601-56118620 Msa0078520:intron 25.0%
! AGTGATAGAGAATATATCAT+AGG - chr1_2:56118912-56118931 Msa0078520:intron 25.0%
! CTCTATAAAGTCAAAAGAAT+GGG + chr1_2:56119036-56119055 None:intergenic 25.0%
! ACTCTATAAAGTCAAAAGAA+TGG + chr1_2:56119037-56119056 None:intergenic 25.0%
! AGCGTATTAAACTAACTTAT+CGG - chr1_2:56119219-56119238 Msa0078520:intron 25.0%
!! AATTTTCTCAATCTTTTGAG+AGG - chr1_2:56119294-56119313 Msa0078520:intron 25.0%
!!! TTATATTTCTAGTCAACTTG+TGG - chr1_2:56119328-56119347 Msa0078520:intron 25.0%
! TGTGTACATATTGAAACTAT+CGG - chr1_2:56119518-56119537 Msa0078520:intron 25.0%
! AACATTGTACATATACACAT+TGG + chr1_2:56119565-56119584 None:intergenic 25.0%
!! TTTTTCTTAATCTTGGTCAT+TGG - chr1_2:56119602-56119621 Msa0078520:intron 25.0%
!!! TAGCATAGTAGAATTTTGAT+AGG - chr1_2:56119658-56119677 Msa0078520:intron 25.0%
! CAATATTATGGAGAAAATTG+AGG + chr1_2:56119733-56119752 None:intergenic 25.0%
! TTCTCCATAATATTGTTAAC+TGG - chr1_2:56119738-56119757 Msa0078520:intron 25.0%
! GTTTCATATGAATGATAGAA+CGG - chr1_2:56119777-56119796 Msa0078520:intron 25.0%
! TTTCATATGAATGATAGAAC+GGG - chr1_2:56119778-56119797 Msa0078520:intron 25.0%
! TTCTTTCACTATGAAGATAT+GGG - chr1_2:56119989-56120008 Msa0078520:intron 25.0%
!! GAATTCCTTTGTTGTTGTTA+TGG - chr1_2:56116991-56117010 Msa0078520:three_prime_UTR 30.0%
GATATCCATAACAACAACAA+AGG + chr1_2:56116999-56117018 None:intergenic 30.0%
! TGTTGTTGTTATGGATATCT+TGG - chr1_2:56117000-56117019 Msa0078520:three_prime_UTR 30.0%
! GTTGTTGTTATGGATATCTT+GGG - chr1_2:56117001-56117020 Msa0078520:three_prime_UTR 30.0%
TTGAGCCTAATAACTATTCT+TGG - chr1_2:56117110-56117129 Msa0078520:three_prime_UTR 30.0%
GTACTCCAAGAATAGTTATT+AGG + chr1_2:56117118-56117137 None:intergenic 30.0%
! CTTTTAATCAAATGCGTGTT+TGG - chr1_2:56117248-56117267 Msa0078520:three_prime_UTR 30.0%
TTTAATCAAATGCGTGTTTG+GGG - chr1_2:56117250-56117269 Msa0078520:three_prime_UTR 30.0%
CATGTGGTTATTGTTTCATA+TGG - chr1_2:56117299-56117318 Msa0078520:three_prime_UTR 30.0%
TGTGGTTATTGTTTCATATG+GGG - chr1_2:56117301-56117320 Msa0078520:three_prime_UTR 30.0%
!! CAAAATTTGTGTAAGTTGGT+TGG - chr1_2:56117449-56117468 Msa0078520:CDS 30.0%
AATTATAGTCTGGTATGACT+TGG - chr1_2:56117778-56117797 Msa0078520:CDS 30.0%
TCTGATATCTAACATGTCTT+TGG - chr1_2:56118067-56118086 Msa0078520:intron 30.0%
!!! GTAGGCTTAAAAAGCTTTTT+TGG - chr1_2:56118276-56118295 Msa0078520:intron 30.0%
GGACTGATATAGATCAAAAT+AGG + chr1_2:56118418-56118437 None:intergenic 30.0%
GATCAATTGATTGGTACAAA+AGG + chr1_2:56118439-56118458 None:intergenic 30.0%
! GATCGAGAATGTTCAAATTT+TGG - chr1_2:56118487-56118506 Msa0078520:intron 30.0%
TTAATTATCCATGGACACTA+TGG + chr1_2:56119082-56119101 None:intergenic 30.0%
TAATATAGATCTACCCGTTT+AGG + chr1_2:56119408-56119427 None:intergenic 30.0%
!! AATTCTACTATGCTAGCTTT+CGG + chr1_2:56119653-56119672 None:intergenic 30.0%
GATGCCAGTTAACAATATTA+TGG + chr1_2:56119745-56119764 None:intergenic 30.0%
! CCATCTTTTCTTGATTTAAC+TGG + chr1_2:56119944-56119963 None:intergenic 30.0%
CCAGTTAAATCAAGAAAAGA+TGG - chr1_2:56119941-56119960 Msa0078520:intron 30.0%
GTTCTTTCACTATGAAGATA+TGG - chr1_2:56119988-56120007 Msa0078520:intron 30.0%
TACGTACGTATAAGAAAGAA+AGG - chr1_2:56120086-56120105 Msa0078520:intron 30.0%
ACGTACGTATAAGAAAGAAA+GGG - chr1_2:56120087-56120106 Msa0078520:intron 30.0%
TATAAGAAAGAAAGGGATTC+CGG - chr1_2:56120094-56120113 Msa0078520:intron 30.0%
!! TTTCTTTTTGTTTCTTGTCG+AGG - chr1_2:56120406-56120425 Msa0078520:intron 30.0%
!!! CAGCTTTTTAAGTGGAAATA+TGG - chr1_2:56120544-56120563 Msa0078520:intron 30.0%
! GATAGTTTTCAAAGAGTCAT+TGG - chr1_2:56120722-56120741 Msa0078520:CDS 30.0%
TTACATTCATAGCTCCACTT+TGG - chr1_2:56117032-56117051 Msa0078520:three_prime_UTR 35.0%
AAGATAACAGCAATCCAAAG+TGG + chr1_2:56117049-56117068 None:intergenic 35.0%
! CTTTGGATTGCTGTTATCTT+CGG - chr1_2:56117049-56117068 Msa0078520:three_prime_UTR 35.0%
! TCTTCAAGTTTCGAATTCCT+TGG - chr1_2:56117143-56117162 Msa0078520:three_prime_UTR 35.0%
!! AGCTCTGAATCATTAAACCA+AGG + chr1_2:56117163-56117182 None:intergenic 35.0%
ATTAAAAACGAACCTGGTTG+CGG + chr1_2:56117212-56117231 None:intergenic 35.0%
! AAGTTGGTTGGAGAAAAAGA+TGG - chr1_2:56117461-56117480 Msa0078520:CDS 35.0%
TTAGATGATACTTGCGTGTT+CGG - chr1_2:56117596-56117615 Msa0078520:CDS 35.0%
TCAAACTGAACCGTACTAAA+CGG - chr1_2:56117818-56117837 Msa0078520:CDS 35.0%
AAAGCAATTGAACTATGACC+TGG - chr1_2:56117930-56117949 Msa0078520:intron 35.0%
!! ATATGCTCTAAAGACGTGTT+AGG + chr1_2:56118014-56118033 None:intergenic 35.0%
!!! GGCTTAAAAAGCTTTTTTGG+TGG - chr1_2:56118279-56118298 Msa0078520:intron 35.0%
CCTATTTAGCTAAACAGATC+AGG + chr1_2:56118312-56118331 None:intergenic 35.0%
CCTGATCTGTTTAGCTAAAT+AGG - chr1_2:56118309-56118328 Msa0078520:intron 35.0%
ATCAAAATAGGGGTGAGAAT+AGG + chr1_2:56118406-56118425 None:intergenic 35.0%
GATCCGTAAAATTGTACAGT+AGG - chr1_2:56118455-56118474 Msa0078520:intron 35.0%
! GTGCCTACTGTACAATTTTA+CGG + chr1_2:56118461-56118480 None:intergenic 35.0%
! AGTTGGTTAGGGATTTCTTT+TGG - chr1_2:56118671-56118690 Msa0078520:intron 35.0%
! GTTGGTTAGGGATTTCTTTT+GGG - chr1_2:56118672-56118691 Msa0078520:intron 35.0%
!!! TCTTTTGGGATGATGAGTTT+CGG - chr1_2:56118686-56118705 Msa0078520:intron 35.0%
! TTCAACTATTCAAGAGTGTG+AGG - chr1_2:56118738-56118757 Msa0078520:intron 35.0%
GGTTTACAACACAAAACACA+AGG + chr1_2:56118814-56118833 None:intergenic 35.0%
TTACTTCGTAGTCATAGCTA+AGG + chr1_2:56118835-56118854 None:intergenic 35.0%
TCTCTATCACTGCAAAAGAA+GGG + chr1_2:56118903-56118922 None:intergenic 35.0%
TTCTCTATCACTGCAAAAGA+AGG + chr1_2:56118904-56118923 None:intergenic 35.0%
ATATCATAGGTCGTCGAATT+TGG - chr1_2:56118925-56118944 Msa0078520:intron 35.0%
TATCATAGGTCGTCGAATTT+GGG - chr1_2:56118926-56118945 Msa0078520:intron 35.0%
AACTTACTACTGTGTGACTA+AGG - chr1_2:56118959-56118978 Msa0078520:intron 35.0%
CAATTGACATGTCCATAGAA+GGG + chr1_2:56118997-56119016 None:intergenic 35.0%
CCTAGTTGGTTAATTATCCA+TGG + chr1_2:56119091-56119110 None:intergenic 35.0%
CCATGGATAATTAACCAACT+AGG - chr1_2:56119088-56119107 Msa0078520:CDS 35.0%
TGATGAAAAAGCTACCTAGT+TGG + chr1_2:56119105-56119124 None:intergenic 35.0%
AGTTTAATACGCTCAAGACT+CGG + chr1_2:56119212-56119231 None:intergenic 35.0%
TAAACTGTCAATTACCTGCA+CGG + chr1_2:56119446-56119465 None:intergenic 35.0%
TCACACTTATACCTTGCAAT+TGG - chr1_2:56119692-56119711 Msa0078520:intron 35.0%
CATCATTTGTACCAATTGCA+AGG + chr1_2:56119706-56119725 None:intergenic 35.0%
CTTGCAATTGGTACAAATGA+TGG - chr1_2:56119704-56119723 Msa0078520:intron 35.0%
! AACTGGCATCTTAGTGATTT+TGG - chr1_2:56119755-56119774 Msa0078520:intron 35.0%
! TTTTCTACATGGTATGCCAA+AGG - chr1_2:56119838-56119857 Msa0078520:intron 35.0%
TTATTAGCACATGCTGACAA+TGG + chr1_2:56120124-56120143 None:intergenic 35.0%
! ATACCTAAGCTTCTAGTTGT+TGG - chr1_2:56120262-56120281 Msa0078520:CDS 35.0%
AAACCATTTCTCTTGAACCA+TGG + chr1_2:56120490-56120509 None:intergenic 35.0%
!! TGATGATGCAGCTTTTTAAG+TGG - chr1_2:56120536-56120555 Msa0078520:intron 35.0%
GTGGAGCTATGAATGTAACA+AGG + chr1_2:56117030-56117049 None:intergenic 40.0%
!! GTTATCTTCGGTGTTGTTGT+TGG - chr1_2:56117061-56117080 Msa0078520:three_prime_UTR 40.0%
TTAGGCTCAATAGCCCATTT+GGG + chr1_2:56117100-56117119 None:intergenic 40.0%
ATTAGGCTCAATAGCCCATT+TGG + chr1_2:56117101-56117120 None:intergenic 40.0%
! TTCTGGTGGTGAAAGTGAAA+AGG - chr1_2:56117394-56117413 Msa0078520:exon 40.0%
! TCTGGTGGTGAAAGTGAAAA+GGG - chr1_2:56117395-56117414 Msa0078520:exon 40.0%
GTGAAAGTGAAAAGGGATTG+AGG - chr1_2:56117402-56117421 Msa0078520:exon 40.0%
TTGGTTGGAGAAAAAGATGG+TGG - chr1_2:56117464-56117483 Msa0078520:CDS 40.0%
CAAGCTTGGTAAGTCATGTT+TGG + chr1_2:56117524-56117543 None:intergenic 40.0%
CAAACATGACTTACCAAGCT+TGG - chr1_2:56117522-56117541 Msa0078520:CDS 40.0%
CAGGAGTAAGAAATACCTCT+TGG + chr1_2:56117556-56117575 None:intergenic 40.0%
GTCAGTCTAGTGATGAGAAT+TGG - chr1_2:56117711-56117730 Msa0078520:CDS 40.0%
!!! CGGTTTTGAACCGTTTAGTA+CGG + chr1_2:56117831-56117850 None:intergenic 40.0%
CGTACTAAACGGTTCAAAAC+CGG - chr1_2:56117829-56117848 Msa0078520:CDS 40.0%
GTGTCTGTTCACAGTTAAAC+CGG + chr1_2:56117851-56117870 None:intergenic 40.0%
CCTACATTGGGTTATTTGAG+CGG - chr1_2:56117873-56117892 Msa0078520:intron 40.0%
GACGTGTTAGGTATCAGAAT+AGG + chr1_2:56118002-56118021 None:intergenic 40.0%
!! GCTTTTTAAGCCTACTAGAC+CGG + chr1_2:56118271-56118290 None:intergenic 40.0%
GCTTAGCTTAGGTTAAGCTT+AGG + chr1_2:56118358-56118377 None:intergenic 40.0%
CTTAACCTAAGCTAAGCCAT+AGG - chr1_2:56118361-56118380 Msa0078520:CDS 40.0%
AGAAACCTATGGCTTAGCTT+AGG + chr1_2:56118369-56118388 None:intergenic 40.0%
AGCCATAGGTTTCTGTCAAT+CGG - chr1_2:56118375-56118394 Msa0078520:CDS 40.0%
AAGAAATCCCTAACCAACTC+AGG + chr1_2:56118670-56118689 None:intergenic 40.0%
ATGTCCATAGAAGGGAAACT+GGG + chr1_2:56118989-56119008 None:intergenic 40.0%
GCAATTGACATGTCCATAGA+AGG + chr1_2:56118998-56119017 None:intergenic 40.0%
GAATGGGCAACTTAATCTCA+TGG + chr1_2:56119020-56119039 None:intergenic 40.0%
AGATATTGCCATAGTGTCCA+TGG - chr1_2:56119071-56119090 Msa0078520:CDS 40.0%
TGGCGTATTTCACTTCTTCA+GGG - chr1_2:56119348-56119367 Msa0078520:intron 40.0%
ATGAAGATATGGGCATACCT+TGG - chr1_2:56119999-56120018 Msa0078520:intron 40.0%
TGAAGATATGGGCATACCTT+GGG - chr1_2:56120000-56120019 Msa0078520:intron 40.0%
TCCAGGATCAAACTTCTTGA+CGG + chr1_2:56120065-56120084 None:intergenic 40.0%
TTCTTATACGTACGTAGTCC+AGG + chr1_2:56120082-56120101 None:intergenic 40.0%
TCTTCTGATGACAAACCGAT+CGG - chr1_2:56120232-56120251 Msa0078520:intron 40.0%
TATTCCAAATACAACCGCCT+TGG + chr1_2:56120332-56120351 None:intergenic 40.0%
! TTGTATTTGGAATAGCCCGA+CGG - chr1_2:56120338-56120357 Msa0078520:CDS 40.0%
! TTCCGAATTTTCCAAACCGT+CGG + chr1_2:56120357-56120376 None:intergenic 40.0%
GTTTCTTGTCGAGGAAATAC+CGG - chr1_2:56120415-56120434 Msa0078520:intron 40.0%
TTGTATCAAATTGGCAGCCA+TGG - chr1_2:56120470-56120489 Msa0078520:intron 40.0%
!! TCTTCGGTGTTGTTGTTGGT+TGG - chr1_2:56117065-56117084 Msa0078520:three_prime_UTR 45.0%
!! CTTCGGTGTTGTTGTTGGTT+GGG - chr1_2:56117066-56117085 Msa0078520:three_prime_UTR 45.0%
TTGGGCTTGGAAACCCAAAT+GGG - chr1_2:56117084-56117103 Msa0078520:three_prime_UTR 45.0%
TCAGAGCTTCAAAACCAACC+TGG - chr1_2:56117175-56117194 Msa0078520:three_prime_UTR 45.0%
GCTTCAAAACCAACCTGGTT+TGG - chr1_2:56117180-56117199 Msa0078520:three_prime_UTR 45.0%
CACATGTGTCAGTGTTGTGT+TGG + chr1_2:56117285-56117304 None:intergenic 45.0%
CAACACAACACTGACACATG+TGG - chr1_2:56117283-56117302 Msa0078520:three_prime_UTR 45.0%
TTGTTTCATATGGGGCAGTG+TGG - chr1_2:56117309-56117328 Msa0078520:three_prime_UTR 45.0%
! GGGATTGAGGAGTATAGTGA+CGG - chr1_2:56117415-56117434 Msa0078520:CDS 45.0%
!! AAAAAGATGGTGGACCAGCT+TGG - chr1_2:56117474-56117493 Msa0078520:CDS 45.0%
ACCAGCTTGGATTCAGATGA+TGG - chr1_2:56117487-56117506 Msa0078520:CDS 45.0%
TCCATCATCTGAATCCAAGC+TGG + chr1_2:56117491-56117510 None:intergenic 45.0%
TGCGTGTTCGGTTATCTAGT+TGG - chr1_2:56117608-56117627 Msa0078520:CDS 45.0%
ATCCTAAGTTGTTCTCGGCT+TGG + chr1_2:56117737-56117756 None:intergenic 45.0%
TGAACAGACACTGCCTACAT+TGG - chr1_2:56117860-56117879 Msa0078520:intron 45.0%
GAACAGACACTGCCTACATT+GGG - chr1_2:56117861-56117880 Msa0078520:intron 45.0%
CCGCTCAAATAACCCAATGT+AGG + chr1_2:56117876-56117895 None:intergenic 45.0%
TTATTTGAGCGGTTCAACCG+TGG - chr1_2:56117884-56117903 Msa0078520:intron 45.0%
! TTTTAGTAGGCCGGTCTAGT+AGG - chr1_2:56118258-56118277 Msa0078520:intron 45.0%
AGCTAAACAGATCAGGCTAC+TGG + chr1_2:56118305-56118324 None:intergenic 45.0%
GACCGATTGACAGAAACCTA+TGG + chr1_2:56118380-56118399 None:intergenic 45.0%
ACCACAGTATCGCAGTAGAA+CGG - chr1_2:56118627-56118646 Msa0078520:intron 45.0%
! ATTCAAGAGTGTGAGGTCAC+TGG - chr1_2:56118745-56118764 Msa0078520:intron 45.0%
TGAGGTCACTGGAACAATGA+TGG - chr1_2:56118756-56118775 Msa0078520:intron 45.0%
! TGGAACAATGATGGTGCAGT+GGG - chr1_2:56118765-56118784 Msa0078520:intron 45.0%
TATGCCCAGTTTCCCTTCTA+TGG - chr1_2:56118982-56119001 Msa0078520:intron 45.0%
CATGTCCATAGAAGGGAAAC+TGG + chr1_2:56118990-56119009 None:intergenic 45.0%
GTACTGCAAAGTATGCTGCA+TGG - chr1_2:56119169-56119188 Msa0078520:intron 45.0%
GTGGCGTATTTCACTTCTTC+AGG - chr1_2:56119347-56119366 Msa0078520:intron 45.0%
TACCTTGTTCCTCCATACCA+AGG - chr1_2:56119373-56119392 Msa0078520:intron 45.0%
CAAGGCAGAGCAAACCTAAA+CGG - chr1_2:56119391-56119410 Msa0078520:intron 45.0%
AAGGCAGAGCAAACCTAAAC+GGG - chr1_2:56119392-56119411 Msa0078520:intron 45.0%
! TCAAGCTTTTGTATCCGTGC+AGG - chr1_2:56119429-56119448 Msa0078520:intron 45.0%
ACACGCATCTGTTGCATATG+TGG - chr1_2:56119917-56119936 Msa0078520:intron 45.0%
ACACTTCACATGAAGTCAGC+TGG + chr1_2:56119967-56119986 None:intergenic 45.0%
! TGCTGATTACGTGAGATCTG+TGG - chr1_2:56120168-56120187 Msa0078520:intron 45.0%
TTCAGTCTCCAACAGGTTAC+CGG + chr1_2:56120203-56120222 None:intergenic 45.0%
! CCTGATTTTCAGTCTCCAAC+AGG + chr1_2:56120210-56120229 None:intergenic 45.0%
CCTGTTGGAGACTGAAAATC+AGG - chr1_2:56120207-56120226 Msa0078520:intron 45.0%
CTTCTGATGACAAACCGATC+GGG - chr1_2:56120233-56120252 Msa0078520:intron 45.0%
TTAGGTATGCTTCTCCCGAT+CGG + chr1_2:56120250-56120269 None:intergenic 45.0%
! CCTAAGCTTCTAGTTGTTGG+CGG - chr1_2:56120265-56120284 Msa0078520:CDS 45.0%
! TCCGAATTTTCCAAACCGTC+GGG + chr1_2:56120356-56120375 None:intergenic 45.0%
! GACGGTTTGGAAAATTCGGA+AGG - chr1_2:56120356-56120375 Msa0078520:CDS 45.0%
GGTTTGGAAAATTCGGAAGG+AGG - chr1_2:56120359-56120378 Msa0078520:CDS 45.0%
CTCTACTGCCACAACTTACT+TGG + chr1_2:56120444-56120463 None:intergenic 45.0%
CAGCCATGGTTCAAGAGAAA+TGG - chr1_2:56120484-56120503 Msa0078520:intron 45.0%
!!! ATTAAAAAACAATTTTATTA+TGG - chr1_2:56119625-56119644 Msa0078520:intron 5.0%
! GTGTTGTTGTTGGTTGGGCT+TGG - chr1_2:56117071-56117090 Msa0078520:three_prime_UTR 50.0%
GTTGGGCTTGGAAACCCAAA+TGG - chr1_2:56117083-56117102 Msa0078520:three_prime_UTR 50.0%
! CGGAGTATTCCAAACCAGGT+TGG + chr1_2:56117192-56117211 None:intergenic 50.0%
! GTTGCGGAGTATTCCAAACC+AGG + chr1_2:56117196-56117215 None:intergenic 50.0%
! GTTTGGAATACTCCGCAACC+AGG - chr1_2:56117197-56117216 Msa0078520:three_prime_UTR 50.0%
TGACTTACCAAGCTTGGCGT+AGG - chr1_2:56117528-56117547 Msa0078520:CDS 50.0%
GACTTACCAAGCTTGGCGTA+GGG - chr1_2:56117529-56117548 Msa0078520:CDS 50.0%
!!! GTTCAACCGTGGTTTTGTCC+AGG - chr1_2:56117895-56117914 Msa0078520:intron 50.0%
CTCGAACCTGGACAAAACCA+CGG + chr1_2:56117904-56117923 None:intergenic 50.0%
!!! TGGTTTTGTCCAGGTTCGAG+CGG - chr1_2:56117904-56117923 Msa0078520:intron 50.0%
! TGCTTTAAACCGCTCGAACC+TGG + chr1_2:56117916-56117935 None:intergenic 50.0%
CTATGACCTGGAGTTCTCAC+CGG - chr1_2:56117942-56117961 Msa0078520:intron 50.0%
!! AGTTCTCACCGGCTTGGTTT+CGG - chr1_2:56117953-56117972 Msa0078520:intron 50.0%
ATCCAAACCCGAAACCAAGC+CGG + chr1_2:56117964-56117983 None:intergenic 50.0%
! TAGGGTGCTCTCAACGAACT+TGG + chr1_2:56118530-56118549 None:intergenic 50.0%
GTTCTACTGCGATACTGTGG+TGG + chr1_2:56118628-56118647 None:intergenic 50.0%
ACCGTTCTACTGCGATACTG+TGG + chr1_2:56118631-56118650 None:intergenic 50.0%
TGAAGATGCGAGTCCTGAGT+TGG - chr1_2:56118654-56118673 Msa0078520:intron 50.0%
!! ATGCGAGTCCTGAGTTGGTT+AGG - chr1_2:56118659-56118678 Msa0078520:intron 50.0%
!! TGCGAGTCCTGAGTTGGTTA+GGG - chr1_2:56118660-56118679 Msa0078520:intron 50.0%
ATGATGAGTTTCGGTCGAGG+TGG - chr1_2:56118695-56118714 Msa0078520:intron 50.0%
TGATGAGTTTCGGTCGAGGT+GGG - chr1_2:56118696-56118715 Msa0078520:intron 50.0%
! CTGGAACAATGATGGTGCAG+TGG - chr1_2:56118764-56118783 Msa0078520:intron 50.0%
TGCCTTGGTATGGAGGAACA+AGG + chr1_2:56119378-56119397 None:intergenic 50.0%
TTTGCTCTGCCTTGGTATGG+AGG + chr1_2:56119385-56119404 None:intergenic 50.0%
! AGGTTTGCTCTGCCTTGGTA+TGG + chr1_2:56119388-56119407 None:intergenic 50.0%
! CGTTTAGGTTTGCTCTGCCT+TGG + chr1_2:56119393-56119412 None:intergenic 50.0%
CCAAGCTTAGCGATTTCCCA+AGG + chr1_2:56120019-56120038 None:intergenic 50.0%
CCTTGGGAAATCGCTAAGCT+TGG - chr1_2:56120016-56120035 Msa0078520:intron 50.0%
GCTAAGCTTGGAGTTCGTCA+GGG - chr1_2:56120028-56120047 Msa0078520:intron 50.0%
TTGGAGTTCGTCAGGGTATG+TGG - chr1_2:56120035-56120054 Msa0078520:intron 50.0%
TGGAGTTCGTCAGGGTATGT+GGG - chr1_2:56120036-56120055 Msa0078520:intron 50.0%
GCCGTCAAGAAGTTTGATCC+TGG - chr1_2:56120061-56120080 Msa0078520:intron 50.0%
ACATGCTGACAATGGAACGC+CGG + chr1_2:56120116-56120135 None:intergenic 50.0%
AGATCTGTGGAAGACTCGAC+CGG - chr1_2:56120181-56120200 Msa0078520:intron 50.0%
CCGCCAACAACTAGAAGCTT+AGG + chr1_2:56120268-56120287 None:intergenic 50.0%
! TTGATCAAGGGTGCAGGCAA+GGG + chr1_2:56120299-56120318 None:intergenic 50.0%
TTGCCTGCACCCTTGATCAA+GGG - chr1_2:56120299-56120318 Msa0078520:CDS 50.0%
GGTCACTAGCCCTTGATCAA+GGG + chr1_2:56120311-56120330 None:intergenic 50.0%
TGGTCACTAGCCCTTGATCA+AGG + chr1_2:56120312-56120331 None:intergenic 50.0%
! TGATCAAGGGCTAGTGACCA+AGG - chr1_2:56120312-56120331 Msa0078520:CDS 50.0%
GTGACCAAGGCGGTTGTATT+TGG - chr1_2:56120325-56120344 Msa0078520:CDS 50.0%
! TTTGGAATAGCCCGACGGTT+TGG - chr1_2:56120343-56120362 Msa0078520:CDS 50.0%
! GCCCGACGGTTTGGAAAATT+CGG - chr1_2:56120352-56120371 Msa0078520:CDS 50.0%
TCTTGTCGAGGAAATACCGG+CGG - chr1_2:56120418-56120437 Msa0078520:intron 50.0%
GTGCATGTCACGTGCAGTTC+TGG - chr1_2:56117377-56117396 Msa0078520:three_prime_UTR 55.0%
! CATGTCACGTGCAGTTCTGG+TGG - chr1_2:56117380-56117399 Msa0078520:three_prime_UTR 55.0%
GGCCAAGCCGAGAACAACTT+AGG - chr1_2:56117732-56117751 Msa0078520:CDS 55.0%
!! GTTCTCACCGGCTTGGTTTC+GGG - chr1_2:56117954-56117973 Msa0078520:intron 55.0%
GGGATGATGAGTTTCGGTCG+AGG - chr1_2:56118692-56118711 Msa0078520:intron 55.0%
CGCTAAGCTTGGAGTTCGTC+AGG - chr1_2:56120027-56120046 Msa0078520:intron 55.0%
GGAGTTCGTCAGGGTATGTG+GGG - chr1_2:56120037-56120056 Msa0078520:intron 55.0%
AGACTCGACCGGTAACCTGT+TGG - chr1_2:56120192-56120211 Msa0078520:intron 55.0%
! CTTGATCAAGGGTGCAGGCA+AGG + chr1_2:56120300-56120319 None:intergenic 55.0%
CTTGCCTGCACCCTTGATCA+AGG - chr1_2:56120298-56120317 Msa0078520:CDS 55.0%
! TAGCCCTTGATCAAGGGTGC+AGG + chr1_2:56120305-56120324 None:intergenic 55.0%
! TCAAGGGCTAGTGACCAAGG+CGG - chr1_2:56120315-56120334 Msa0078520:CDS 55.0%
CTTGGTCCCTACGCCAAGCT+TGG + chr1_2:56117538-56117557 None:intergenic 60.0%
AGCTTGGCGTAGGGACCAAG+AGG - chr1_2:56117538-56117557 Msa0078520:CDS 60.0%
! ACCTGGAGTTCTCACCGGCT+TGG - chr1_2:56117947-56117966 Msa0078520:intron 60.0%
ACCAAGCCGGTGAGAACTCC+AGG + chr1_2:56117951-56117970 None:intergenic 60.0%
!! CACCGGCTTGGTTTCGGGTT+TGG - chr1_2:56117959-56117978 Msa0078520:intron 60.0%
! AAGGGTGCAGGCAAGGGCAA+TGG + chr1_2:56120293-56120312 None:intergenic 60.0%
ACCGGCGGCCAAGTAAGTTG+TGG - chr1_2:56120433-56120452 Msa0078520:intron 60.0%
GCCACAACTTACTTGGCCGC+CGG + chr1_2:56120437-56120456 None:intergenic 60.0%
GATGGTGCAGTGGGTGCGCA+AGG - chr1_2:56118774-56118793 Msa0078520:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 56116983 56120813 56116983 ID=Msa0078520;Name=Msa0078520
chr1_2 mRNA 56116983 56120813 56116983 ID=Msa0078520-mRNA-1;Parent=Msa0078520;Name=Msa0078520-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.8|0.83|1|1|1|6|426|395
chr1_2 exon 56116983 56117851 56116983 ID=Msa0078520-mRNA-1:exon:17525;Parent=Msa0078520-mRNA-1
chr1_2 exon 56118346 56118427 56118346 ID=Msa0078520-mRNA-1:exon:17524;Parent=Msa0078520-mRNA-1
chr1_2 exon 56118816 56118899 56118816 ID=Msa0078520-mRNA-1:exon:17523;Parent=Msa0078520-mRNA-1
chr1_2 exon 56119001 56119177 56119001 ID=Msa0078520-mRNA-1:exon:17522;Parent=Msa0078520-mRNA-1
chr1_2 exon 56120237 56120402 56120237 ID=Msa0078520-mRNA-1:exon:17521;Parent=Msa0078520-mRNA-1
chr1_2 exon 56120578 56120813 56120578 ID=Msa0078520-mRNA-1:exon:17520;Parent=Msa0078520-mRNA-1
chr1_2 CDS 56120578 56120813 56120578 ID=Msa0078520-mRNA-1:cds;Parent=Msa0078520-mRNA-1
chr1_2 CDS 56120237 56120402 56120237 ID=Msa0078520-mRNA-1:cds;Parent=Msa0078520-mRNA-1
chr1_2 CDS 56119001 56119177 56119001 ID=Msa0078520-mRNA-1:cds;Parent=Msa0078520-mRNA-1
chr1_2 CDS 56118816 56118899 56118816 ID=Msa0078520-mRNA-1:cds;Parent=Msa0078520-mRNA-1
chr1_2 CDS 56118346 56118427 56118346 ID=Msa0078520-mRNA-1:cds;Parent=Msa0078520-mRNA-1
chr1_2 CDS 56117409 56117851 56117409 ID=Msa0078520-mRNA-1:cds;Parent=Msa0078520-mRNA-1
chr1_2 three_prime_UTR 56116983 56117408 56116983 ID=Msa0078520-mRNA-1:three_prime_utr;Parent=Msa0078520-mRNA-1
Gene Sequence

>Msa0078520

ATGTTCGAGAATTCCTTTGTTGTTGTTATGGATATCTTGGGTAACCTTGTTACATTCATAGCTCCACTTTGGATTGCTGTTATCTTCGGTGTTGTTGTTGGTTGGGCTTGGAAACCCAAATGGGCTATTGAGCCTAATAACTATTCTTGGAGTACTAATCTCTTCAAGTTTCGAATTCCTTGGTTTAATGATTCAGAGCTTCAAAACCAACCTGGTTTGGAATACTCCGCAACCAGTTCTGGTGGTGAAAGTGAAAAGGGATTGAGGAGTATAGTGACGGAACATGATTTGCAAAATTTGTGTAAGTTGGTTGGAGAAAAAGATGGTGGACCAGCTTGGATTCAGATGATGGATCGTTCTACACCAAACATGACTTACCAAGCTTGGCGTAGGGACCAAGAGAATGGACCACCACAGTATCGCAGTAGAACGGTGTTTGAAGATGCGAGTCCTGAGTTGGTTAGGGATTTCTTTTGGGATGATGAGTTTCGGTCGAGGTGGGATGATATGCTTCTACATGCTTCAACTATTCAAGAGTGTGAGGTCACTGGAACAATGATGGTGCAGTGGGTGCGCAAGTTTCCCTTCTTTTGCAGTGATAGAGAATATATCATAGGTCGTCGAATTTGGGATGCAGAGCGAACTTACTACTGTGTGACTAAGGGAGTACCTTGTTCCTCCATACCAAGGCAGAGCAAACCTAAACGGGTAGATCTATATTATTCAAGCTTTTGTATCCGTGCAGTTAAATCAAGAAAAGATGGCCAGCTGACTTCATGTGAAGTGTTGTTCTTTCACTATGAAGATATGGGCATACCTTGGGAAATCGCTAAGCTTGGAGTTCGTCAGGGTATGTGGGGAGCCGTCAAGAAGTTTGATCCTGGACTACGTACGTATAAGAAAGAAAGGGATTCCGGCGTTCCATTGTCAGCATGTGCTAATAACGCTAAAATCAATACTAAAGTAAGTGCTGATTACGTGAGATCTGTGGAAGACTCGACCGGTAACCTGTTGGAGACTGAAAATCAGGATTCTTCTGATGACAAACCGATCGGGAGAAGCATACCTAAGCTTCTAGTTGTTGGCGGAGCCATTGCCCTTGCCTGCACCCTTGATCAAGGGCTAGTGACCAAGGCGGTTGTATTTGGAATAGCCCGACGGTTTGGAAAATTCGGAAGGAGGTTGTGA
Protein sequence

>Msa0078520

MFENSFVVVMDILGNLVTFIAPLWIAVIFGVVVGWAWKPKWAIEPNNYSWSTNLFKFRIPWFNDSELQNQPGLEYSATSSGGESEKGLRSIVTEHDLQNLCKLVGEKDGGPAWIQMMDRSTPNMTYQAWRRDQENGPPQYRSRTVFEDASPELVRDFFWDDEFRSRWDDMLLHASTIQECEVTGTMMVQWVRKFPFFCSDREYIIGRRIWDAERTYYCVTKGVPCSSIPRQSKPKRVDLYYSSFCIRAVKSRKDGQLTSCEVLFFHYEDMGIPWEIAKLGVRQGMWGAVKKFDPGLRTYKKERDSGVPLSACANNAKINTKVSADYVRSVEDSTGNLLETENQDSSDDKPIGRSIPKLLVVGGAIALACTLDQGLVTKAVVFGIARRFGKFGRRL*