Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172010 | XP_003590964.1 | 99.583 | 240 | 1 | 0 | 1 | 240 | 1 | 240 | 5.82e-176 | 493 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172010 | sp|Q0P5L0|RBM42_BOVIN | 70.588 | 102 | 30 | 0 | 112 | 213 | 329 | 430 | 7.63e-50 | 172 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172010 | G7I6S0 | 99.583 | 240 | 1 | 0 | 1 | 240 | 1 | 240 | 2.78e-176 | 493 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031990 | Msa0172010 | 0.840269 | 9.626070e-58 | -8.615850e-47 |
| Msa0079270 | Msa0172010 | 0.838440 | 2.871812e-57 | -8.615850e-47 |
| Msa0126920 | Msa0172010 | 0.876211 | 1.672468e-68 | -8.615850e-47 |
| Msa0172010 | Msa1412060 | 0.869603 | 2.735960e-66 | -8.615850e-47 |
| Msa0172010 | Msa1432620 | 0.943305 | 1.530154e-102 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172010 | MtrunA17_Chr1g0190211 | 99.583 | 240 | 1 | 0 | 1 | 240 | 1 | 240 | 5.35e-180 | 493 |
| Msa0172010 | MtrunA17_Chr1g0153871 | 36.782 | 87 | 54 | 1 | 131 | 216 | 189 | 275 | 4.23e-15 | 73.9 |
| Msa0172010 | MtrunA17_Chr3g0139111 | 41.892 | 74 | 43 | 0 | 132 | 205 | 145 | 218 | 1.31e-14 | 72.4 |
| Msa0172010 | MtrunA17_Chr1g0177101 | 27.429 | 175 | 101 | 5 | 54 | 206 | 111 | 281 | 2.40e-14 | 71.2 |
| Msa0172010 | MtrunA17_Chr3g0133651 | 36.782 | 87 | 54 | 1 | 131 | 216 | 186 | 272 | 2.97e-14 | 71.2 |
| Msa0172010 | MtrunA17_Chr2g0328791 | 37.931 | 87 | 53 | 1 | 131 | 216 | 107 | 193 | 3.05e-14 | 71.2 |
| Msa0172010 | MtrunA17_Chr4g0074711 | 43.421 | 76 | 42 | 1 | 131 | 205 | 166 | 241 | 4.63e-14 | 70.9 |
| Msa0172010 | MtrunA17_Chr8g0344491 | 32.381 | 105 | 68 | 1 | 132 | 236 | 147 | 248 | 5.43e-14 | 70.5 |
| Msa0172010 | MtrunA17_Chr4g0070231 | 37.838 | 74 | 46 | 0 | 132 | 205 | 131 | 204 | 7.18e-14 | 70.1 |
| Msa0172010 | MtrunA17_Chr4g0045221 | 40.789 | 76 | 44 | 1 | 131 | 205 | 213 | 288 | 1.16e-13 | 69.7 |
| Msa0172010 | MtrunA17_Chr2g0288251 | 39.474 | 76 | 45 | 1 | 131 | 205 | 154 | 229 | 2.54e-12 | 65.9 |
| Msa0172010 | MtrunA17_Chr4g0035031 | 31.646 | 79 | 54 | 0 | 131 | 209 | 7 | 85 | 4.48e-12 | 63.2 |
| Msa0172010 | MtrunA17_Chr4g0035001 | 30.380 | 79 | 55 | 0 | 131 | 209 | 5 | 83 | 8.50e-12 | 61.6 |
| Msa0172010 | MtrunA17_Chr4g0035051 | 29.114 | 79 | 56 | 0 | 131 | 209 | 7 | 85 | 1.58e-11 | 59.7 |
| Msa0172010 | MtrunA17_Chr7g0267571 | 30.189 | 106 | 73 | 1 | 132 | 236 | 212 | 317 | 8.40e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172010 | AT3G04500.1 | 77.665 | 197 | 40 | 3 | 45 | 240 | 52 | 245 | 1.40e-110 | 318 |
| Msa0172010 | AT3G04500.3 | 76.471 | 119 | 24 | 3 | 45 | 162 | 52 | 167 | 3.32e-60 | 188 |
| Msa0172010 | AT3G04500.2 | 80.180 | 111 | 19 | 2 | 55 | 164 | 61 | 169 | 3.38e-60 | 187 |
| Msa0172010 | AT3G14100.1 | 43.243 | 74 | 42 | 0 | 132 | 205 | 144 | 217 | 1.87e-15 | 75.5 |
| Msa0172010 | AT1G54080.1 | 44.595 | 74 | 41 | 0 | 132 | 205 | 148 | 221 | 2.41e-15 | 75.1 |
| Msa0172010 | AT1G17370.1 | 35.484 | 93 | 57 | 1 | 132 | 224 | 139 | 228 | 5.84e-15 | 73.9 |
| Msa0172010 | AT1G17370.2 | 35.484 | 93 | 57 | 1 | 132 | 224 | 139 | 228 | 6.20e-15 | 73.9 |
| Msa0172010 | AT5G54900.1 | 43.421 | 76 | 42 | 1 | 131 | 205 | 153 | 228 | 3.31e-14 | 71.6 |
| Msa0172010 | AT3G19130.1 | 43.421 | 76 | 42 | 1 | 131 | 205 | 201 | 276 | 4.20e-14 | 71.2 |
| Msa0172010 | AT4G27000.1 | 41.975 | 81 | 44 | 2 | 125 | 204 | 168 | 246 | 8.42e-14 | 70.5 |
| Msa0172010 | AT1G11650.1 | 42.105 | 76 | 43 | 1 | 131 | 205 | 154 | 229 | 8.46e-14 | 69.7 |
| Msa0172010 | AT1G54080.2 | 42.308 | 78 | 41 | 1 | 132 | 205 | 148 | 225 | 8.77e-14 | 70.5 |
| Msa0172010 | AT1G11650.2 | 42.105 | 76 | 43 | 1 | 131 | 205 | 154 | 229 | 1.91e-13 | 69.3 |
| Msa0172010 | AT5G19350.2 | 40.789 | 76 | 44 | 1 | 131 | 205 | 115 | 190 | 2.58e-13 | 68.9 |
| Msa0172010 | AT5G19350.1 | 40.789 | 76 | 44 | 1 | 131 | 205 | 115 | 190 | 2.60e-13 | 68.9 |
| Msa0172010 | AT1G47490.2 | 35.632 | 87 | 55 | 1 | 131 | 216 | 196 | 282 | 1.00e-12 | 67.0 |
| Msa0172010 | AT3G23830.2 | 32.039 | 103 | 67 | 1 | 106 | 205 | 6 | 108 | 1.43e-12 | 63.5 |
| Msa0172010 | AT3G23830.1 | 32.039 | 103 | 67 | 1 | 106 | 205 | 6 | 108 | 1.43e-12 | 63.5 |
| Msa0172010 | AT1G49600.3 | 40.789 | 76 | 44 | 1 | 131 | 205 | 212 | 287 | 1.49e-12 | 67.0 |
| Msa0172010 | AT1G49600.2 | 40.789 | 76 | 44 | 1 | 131 | 205 | 212 | 287 | 1.49e-12 | 67.0 |
| Msa0172010 | AT1G49600.1 | 40.789 | 76 | 44 | 1 | 131 | 205 | 212 | 287 | 1.62e-12 | 66.6 |
| Msa0172010 | AT1G47490.1 | 35.632 | 87 | 55 | 1 | 131 | 216 | 196 | 282 | 2.40e-12 | 66.2 |
| Msa0172010 | AT4G39260.3 | 30.952 | 84 | 58 | 0 | 128 | 211 | 2 | 85 | 5.91e-12 | 60.5 |
| Msa0172010 | AT4G39260.2 | 30.488 | 82 | 57 | 0 | 128 | 209 | 2 | 83 | 6.44e-12 | 61.6 |
| Msa0172010 | AT1G47500.2 | 38.158 | 76 | 46 | 1 | 131 | 205 | 198 | 273 | 7.64e-12 | 64.3 |
| Msa0172010 | AT1G47500.1 | 38.158 | 76 | 46 | 1 | 131 | 205 | 198 | 273 | 1.29e-11 | 63.9 |
| Msa0172010 | AT4G39260.1 | 30.488 | 82 | 57 | 0 | 128 | 209 | 2 | 83 | 1.53e-11 | 61.6 |
| Msa0172010 | AT1G71770.1 | 23.741 | 139 | 100 | 3 | 79 | 212 | 284 | 421 | 5.75e-11 | 62.4 |
| Msa0172010 | AT1G71770.2 | 23.741 | 139 | 100 | 3 | 79 | 212 | 284 | 421 | 5.75e-11 | 62.4 |
| Msa0172010 | AT1G58470.2 | 34.177 | 79 | 50 | 1 | 130 | 208 | 4 | 80 | 9.56e-11 | 61.2 |
| Msa0172010 | AT1G58470.1 | 34.177 | 79 | 50 | 1 | 130 | 208 | 4 | 80 | 9.56e-11 | 61.2 |
Find 103 sgRNAs with CRISPR-Local
Find 324 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTACTCTTGCCATGTTAA+AGG | 0.192434 | 1_4:+56872128 | None:intergenic |
| ATACCGTACTGATGAATTAT+TGG | 0.195169 | 1_4:-56869138 | Msa0172010:three_prime_UTR |
| CCGAGGAACAGCTTTCTTCT+TGG | 0.222688 | 1_4:+56873488 | None:intergenic |
| CGGCTCTTCTGCGGTGATCT+TGG | 0.238216 | 1_4:-56872201 | Msa0172010:CDS |
| TCTAAAATCGCGTTTGGTTT+AGG | 0.252268 | 1_4:+56873983 | None:intergenic |
| AACCCGATTTATACATATTC+TGG | 0.256077 | 1_4:+56869339 | None:intergenic |
| ATCTTTAAATAGCACATTCT+TGG | 0.265302 | 1_4:+56869222 | None:intergenic |
| TAAGCAGCAGGCGGTGGAAC+GGG | 0.268956 | 1_4:+56873728 | None:intergenic |
| CGTTTGGTTTAGGTTTGTTT+GGG | 0.272698 | 1_4:+56873993 | None:intergenic |
| TTGTATAATCAGATGATTAT+CGG | 0.298287 | 1_4:-56872221 | Msa0172010:intron |
| GCGTTTGGTTTAGGTTTGTT+TGG | 0.326023 | 1_4:+56873992 | None:intergenic |
| GGCATTGGAATATGTGAATT+GGG | 0.328527 | 1_4:+56873862 | None:intergenic |
| CAATGTTTGATTGATCGAAT+TGG | 0.330230 | 1_4:+56873953 | None:intergenic |
| GGCTCTTCTGCGGTGATCTT+GGG | 0.342878 | 1_4:-56872200 | Msa0172010:CDS |
| TATTCTGCACAAGTGAAAAT+AGG | 0.344778 | 1_4:-56869362 | Msa0172010:exon |
| AGGCCAGAATATGTATAAAT+CGG | 0.347367 | 1_4:-56869342 | Msa0172010:three_prime_UTR |
| CGGAGGAAGCTGCACGGCGG+GGG | 0.354638 | 1_4:+56873766 | None:intergenic |
| CTTCCTCCGCCGCCAATTGT+CGG | 0.356289 | 1_4:-56873752 | Msa0172010:CDS |
| AATGTTTGATTGATCGAATT+GGG | 0.378975 | 1_4:+56873954 | None:intergenic |
| TGTTGAAGGTGAAAGGGAAC+GGG | 0.379503 | 1_4:+56873830 | None:intergenic |
| GGCGGAGGAAGCTGCACGGC+GGG | 0.390499 | 1_4:+56873764 | None:intergenic |
| AGCAGCAAGGTCAGCAGGGT+TGG | 0.390729 | 1_4:+56870449 | None:intergenic |
| GGAAAATCTAAAATCGCGTT+TGG | 0.394601 | 1_4:+56873977 | None:intergenic |
| CAGGTAAGTACGTCGGAAAT+CGG | 0.399897 | 1_4:-56869575 | Msa0172010:CDS |
| GGGCATTGGAATATGTGAAT+TGG | 0.406105 | 1_4:+56873861 | None:intergenic |
| TCTTTAAATAGCACATTCTT+GGG | 0.409087 | 1_4:+56869223 | None:intergenic |
| GGTGGAACGGGGCCGACAAT+TGG | 0.409141 | 1_4:+56873740 | None:intergenic |
| TGAAAGGGAACGGGGAAGTA+AGG | 0.412150 | 1_4:+56873839 | None:intergenic |
| AGAGCAGCAGCAAGGTCAGC+AGG | 0.413814 | 1_4:+56870444 | None:intergenic |
| GGGCCGACAATTGGCGGCGG+AGG | 0.430346 | 1_4:+56873749 | None:intergenic |
| GCGGAGGAAGCTGCACGGCG+GGG | 0.443060 | 1_4:+56873765 | None:intergenic |
| GCGTAGTGAGAGGTGGTTGC+GGG | 0.445928 | 1_4:+56873806 | None:intergenic |
| ATATTTGTCAATATATTAAG+TGG | 0.448211 | 1_4:+56869168 | None:intergenic |
| CGGCGGAGGAAGCTGCACGG+CGG | 0.453429 | 1_4:+56873763 | None:intergenic |
| GGAACGGGGCCGACAATTGG+CGG | 0.457314 | 1_4:+56873743 | None:intergenic |
| GGAAAGCTGCAGGTCAAGCT+TGG | 0.458619 | 1_4:-56873467 | Msa0172010:CDS |
| ATTCCAATGTAACAAATTGA+AGG | 0.458975 | 1_4:-56869266 | Msa0172010:three_prime_UTR |
| AACGGGGAAGTAAGGGGCAT+TGG | 0.463371 | 1_4:+56873847 | None:intergenic |
| TCAGGCCACTCTGCAAGAAT+AGG | 0.467965 | 1_4:+56873438 | None:intergenic |
| GAAAGCTGCAGGTCAAGCTT+GGG | 0.471410 | 1_4:-56873466 | Msa0172010:CDS |
| TGCGGGTTGTTGAAGGTGAA+AGG | 0.471510 | 1_4:+56873823 | None:intergenic |
| GGTGGTGTCGTCATTGCAAT+TGG | 0.472771 | 1_4:+56873905 | None:intergenic |
| GTTGTTAGAGATAAGCGAAC+TGG | 0.476084 | 1_4:-56870504 | Msa0172010:CDS |
| AGATGTGTAAACCTCTCGTT+AGG | 0.479688 | 1_4:-56869203 | Msa0172010:three_prime_UTR |
| AGGTGGTTGCGGGTTGTTGA+AGG | 0.484864 | 1_4:+56873816 | None:intergenic |
| ACGGAGTAAGCAGCAGGCGG+TGG | 0.487179 | 1_4:+56873722 | None:intergenic |
| AAAGGGAACGGGGAAGTAAG+GGG | 0.493709 | 1_4:+56873841 | None:intergenic |
| GGCCAGAATATGTATAAATC+GGG | 0.496131 | 1_4:-56869341 | Msa0172010:three_prime_UTR |
| GTAAGCAGCAGGCGGTGGAA+CGG | 0.496822 | 1_4:+56873727 | None:intergenic |
| GAGAACTGATTATGATGCAT+TGG | 0.497577 | 1_4:-56869520 | Msa0172010:CDS |
| AAAGGGTATAACGTGACATA+AGG | 0.500921 | 1_4:+56869101 | None:intergenic |
| GAACCTTCAATTTGTTACAT+TGG | 0.502282 | 1_4:+56869263 | None:intergenic |
| TAAAACTACGCAAGAGTAAG+TGG | 0.505433 | 1_4:-56869548 | Msa0172010:CDS |
| AACTTTGGAACAGCATTCAA+AGG | 0.506140 | 1_4:+56869083 | None:intergenic |
| TTGTTGAAGGTGAAAGGGAA+CGG | 0.508796 | 1_4:+56873829 | None:intergenic |
| GAAAGGGAACGGGGAAGTAA+GGG | 0.516807 | 1_4:+56873840 | None:intergenic |
| ACTCTTGCCATGTTAAAGGA+AGG | 0.519304 | 1_4:+56872132 | None:intergenic |
| GCTGTTCCTCGGAAAGCTGC+AGG | 0.534181 | 1_4:-56873477 | Msa0172010:CDS |
| TGCGGAACGGAGTAAGCAGC+AGG | 0.541336 | 1_4:+56873716 | None:intergenic |
| ACTTTGGAACAGCATTCAAA+GGG | 0.543033 | 1_4:+56869084 | None:intergenic |
| GCGGGTTGTTGAAGGTGAAA+GGG | 0.543608 | 1_4:+56873824 | None:intergenic |
| CTCTTGCCATGTTAAAGGAA+GGG | 0.550026 | 1_4:+56872133 | None:intergenic |
| TCAATATATTAAGTGGCTTG+AGG | 0.551508 | 1_4:+56869175 | None:intergenic |
| TTCACATTCTCAAGAGCCTC+CGG | 0.552039 | 1_4:+56873552 | None:intergenic |
| GCGATTCCCTTCCTTTAACA+TGG | 0.564587 | 1_4:-56872139 | Msa0172010:CDS |
| AAGCAGCAGGCGGTGGAACG+GGG | 0.570100 | 1_4:+56873729 | None:intergenic |
| CCAAGAAGAAAGCTGTTCCT+CGG | 0.572765 | 1_4:-56873488 | Msa0172010:CDS |
| AGCTGCAGGTCAAGCTTGGG+AGG | 0.574905 | 1_4:-56873463 | Msa0172010:CDS |
| GGCGTAGTGAGAGGTGGTTG+CGG | 0.577840 | 1_4:+56873805 | None:intergenic |
| TCTTGGGAAAGAAAATCTAA+AGG | 0.578652 | 1_4:+56869239 | None:intergenic |
| CTCAACGTCGCTACTCGCAA+TGG | 0.579241 | 1_4:+56873524 | None:intergenic |
| GCTTGACCTGCAGCTTTCCG+AGG | 0.583099 | 1_4:+56873471 | None:intergenic |
| AAACCAATAATTCATCAGTA+CGG | 0.589880 | 1_4:+56869135 | None:intergenic |
| GTTGAAGGTGAAAGGGAACG+GGG | 0.590747 | 1_4:+56873831 | None:intergenic |
| GCTGCTCTTAAAGAAATGAA+TGG | 0.593104 | 1_4:-56870429 | Msa0172010:intron |
| ATTCTTGCAGAGTGGCCTGA+AGG | 0.594669 | 1_4:-56873435 | Msa0172010:intron |
| ATGTTTGATTGATCGAATTG+GGG | 0.604585 | 1_4:+56873955 | None:intergenic |
| GAGCAGCAGCAAGGTCAGCA+GGG | 0.605494 | 1_4:+56870445 | None:intergenic |
| GTAGGGTGCGGCGTAGTGAG+AGG | 0.607879 | 1_4:+56873796 | None:intergenic |
| GATGATTATCGGCTCTTCTG+CGG | 0.609558 | 1_4:-56872210 | Msa0172010:CDS |
| GGGTGCGGCGTAGTGAGAGG+TGG | 0.612059 | 1_4:+56873799 | None:intergenic |
| GGCTCTTGAGAATGTGAAGG+CGG | 0.612668 | 1_4:-56873547 | Msa0172010:CDS |
| ACGGGGCCGACAATTGGCGG+CGG | 0.614773 | 1_4:+56873746 | None:intergenic |
| GGTTGAGATGATGAGGATGA+AGG | 0.616374 | 1_4:+56873884 | None:intergenic |
| TGGAACGAATCGTGAATCGA+TGG | 0.619092 | 1_4:+56873925 | None:intergenic |
| TGATGCATTGGAGAAACAGA+AGG | 0.623280 | 1_4:-56869508 | Msa0172010:intron |
| TGGCGGCGGAGGAAGCTGCA+CGG | 0.623515 | 1_4:+56873760 | None:intergenic |
| GCATTGGAATATGTGAATTG+GGG | 0.628373 | 1_4:+56873863 | None:intergenic |
| GTTTGGTTTAGGTTTGTTTG+GGG | 0.629522 | 1_4:+56873994 | None:intergenic |
| TTTCTTTAAGAGCAGCAGCA+AGG | 0.635705 | 1_4:+56870436 | None:intergenic |
| AACTACGCAAGAGTAAGTGG+AGG | 0.640310 | 1_4:-56869545 | Msa0172010:CDS |
| TGTTTGATTGATCGAATTGG+GGG | 0.641436 | 1_4:+56873956 | None:intergenic |
| GGAGGCTCTTGAGAATGTGA+AGG | 0.648124 | 1_4:-56873550 | Msa0172010:CDS |
| TTGAGGCATAACCTAACGAG+AGG | 0.655493 | 1_4:+56869192 | None:intergenic |
| TTGGTTTCAGGTAAGTACGT+CGG | 0.656926 | 1_4:-56869582 | Msa0172010:intron |
| TGAGATGATGAGGATGAAGG+TGG | 0.660814 | 1_4:+56873887 | None:intergenic |
| AGGATCCTATTCTTGCAGAG+TGG | 0.663088 | 1_4:-56873443 | Msa0172010:CDS |
| TGCACAGATAATTACGCCGG+AGG | 0.666682 | 1_4:-56873568 | Msa0172010:CDS |
| ACTACGCAAGAGTAAGTGGA+GGG | 0.675815 | 1_4:-56869544 | Msa0172010:CDS |
| GAATTGGGGTTGAGATGATG+AGG | 0.677929 | 1_4:+56873877 | None:intergenic |
| AGATGCACAGATAATTACGC+CGG | 0.679077 | 1_4:-56873571 | Msa0172010:CDS |
| ACTAACTTGATATTGCGGAA+CGG | 0.692194 | 1_4:+56873703 | None:intergenic |
| GGAACGGAGTAAGCAGCAGG+CGG | 0.735035 | 1_4:+56873719 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATCTAAAATCTAAAAAT+TGG | + | chr1_4:56869099-56869118 | None:intergenic | 10.0% |
| !! | AAATAAATTAATTAACGAAT+TGG | + | chr1_4:56869779-56869798 | None:intergenic | 10.0% |
| !!! | AATTATATTTTTGTAAACAA+TGG | + | chr1_4:56872108-56872127 | None:intergenic | 10.0% |
| !!! | AACATAAAAACTTTTTTATT+TGG | + | chr1_4:56872293-56872312 | None:intergenic | 10.0% |
| !! | AATGTGAAAATTAAAAATAA+TGG | + | chr1_4:56872506-56872525 | None:intergenic | 10.0% |
| !!! | AAATTATCAATTTAGAATAT+GGG | - | chr1_4:56873010-56873029 | Msa0172010:intron | 10.0% |
| !!! | TTCTTTTATACATAAATAAA+TGG | - | chr1_4:56873111-56873130 | Msa0172010:intron | 10.0% |
| !!! | ATTTTAGAATAAGAAAATTC+TGG | - | chr1_4:56869114-56869133 | Msa0172010:three_prime_UTR | 15.0% |
| !! | TTTAATGTATATTGGAAATT+TGG | - | chr1_4:56869797-56869816 | Msa0172010:intron | 15.0% |
| !!! | TATATCTGATATTTTTTGAA+AGG | - | chr1_4:56870456-56870475 | Msa0172010:CDS | 15.0% |
| !!! | AATTCTTTTATTTTTAGTTG+TGG | - | chr1_4:56871058-56871077 | Msa0172010:intron | 15.0% |
| !!! | TTCATAATTTACATTTTATC+AGG | - | chr1_4:56871175-56871194 | Msa0172010:intron | 15.0% |
| !!! | GTTATTTATTTTGTTTGTTA+CGG | - | chr1_4:56871364-56871383 | Msa0172010:intron | 15.0% |
| !!! | TTATTTATTTTGTTTGTTAC+GGG | - | chr1_4:56871365-56871384 | Msa0172010:intron | 15.0% |
| !! | AAACTTGTAAATTTATATAC+GGG | + | chr1_4:56871440-56871459 | None:intergenic | 15.0% |
| !! | CAAACTTGTAAATTTATATA+CGG | + | chr1_4:56871441-56871460 | None:intergenic | 15.0% |
| !!! | TTTGTAATTTGTTTTGATTA+AGG | - | chr1_4:56872598-56872617 | Msa0172010:intron | 15.0% |
| !!! | ATAATATTGACTTTTTAGTT+AGG | - | chr1_4:56872842-56872861 | Msa0172010:intron | 15.0% |
| !!! | TAATATTGACTTTTTAGTTA+GGG | - | chr1_4:56872843-56872862 | Msa0172010:intron | 15.0% |
| !!! | GAAATTATCAATTTAGAATA+TGG | - | chr1_4:56873009-56873028 | Msa0172010:intron | 15.0% |
| !!! | AATTATCAATTTAGAATATG+GGG | - | chr1_4:56873011-56873030 | Msa0172010:intron | 15.0% |
| !!! | TACATAAATAAATGGATTTA+TGG | - | chr1_4:56873119-56873138 | Msa0172010:intron | 15.0% |
| !! | ATATTTGTCAATATATTAAG+TGG | + | chr1_4:56873979-56873998 | None:intergenic | 15.0% |
| !! | AAAAAACTAACTTGATATTG+CGG | + | chr1_4:56869449-56869468 | None:intergenic | 20.0% |
| !!! | TCTTCTTTTCAATTTGTATT+TGG | - | chr1_4:56869472-56869491 | Msa0172010:intron | 20.0% |
| !! | TTCAATTTGTATTTGGAAAT+TGG | - | chr1_4:56869479-56869498 | Msa0172010:intron | 20.0% |
| !! | TCAATTTGTATTTGGAAATT+GGG | - | chr1_4:56869480-56869499 | Msa0172010:intron | 20.0% |
| !! | AATGTAGGTTATTTATCATA+GGG | - | chr1_4:56870281-56870300 | Msa0172010:intron | 20.0% |
| !!! | GATTGTGAAATTAAAGTTTT+TGG | - | chr1_4:56870350-56870369 | Msa0172010:intron | 20.0% |
| !!! | AAATTAAAGTTTTTGGTGTA+GGG | - | chr1_4:56870357-56870376 | Msa0172010:intron | 20.0% |
| !! | TCCTTAATTTAAAGAAGAAA+AGG | - | chr1_4:56870544-56870563 | Msa0172010:intron | 20.0% |
| !!! | TCCTTTTCTTCTTTAAATTA+AGG | + | chr1_4:56870548-56870567 | None:intergenic | 20.0% |
| !! | ACAAGTTAGATAACTATTTA+TGG | - | chr1_4:56870881-56870900 | Msa0172010:intron | 20.0% |
| !! | TAATCATCTGATTATACAAA+AGG | + | chr1_4:56870922-56870941 | None:intergenic | 20.0% |
| !! | TTGTATAATCAGATGATTAT+CGG | - | chr1_4:56870923-56870942 | Msa0172010:intron | 20.0% |
| !! | TAAAATGTAAATTATGAAGC+AGG | + | chr1_4:56871173-56871192 | None:intergenic | 20.0% |
| !! | CGTATATAAATTTACAAGTT+TGG | - | chr1_4:56871439-56871458 | Msa0172010:intron | 20.0% |
| !! | TTCATTTGTGATGATAAAAT+TGG | - | chr1_4:56871891-56871910 | Msa0172010:intron | 20.0% |
| !! | TAAAAATAAGTCAATCCAAA+CGG | + | chr1_4:56872249-56872268 | None:intergenic | 20.0% |
| !! | ATTATTTGCAAATATGTTTG+TGG | - | chr1_4:56872562-56872581 | Msa0172010:intron | 20.0% |
| !! | ACTAAAAAGTCAATATTATC+TGG | + | chr1_4:56872841-56872860 | None:intergenic | 20.0% |
| !! | TCAAATAATTAAGTGAAGTT+TGG | - | chr1_4:56873378-56873397 | Msa0172010:intron | 20.0% |
| ! | AATGTTTGATTGATCGAATT+GGG | + | chr1_4:56869193-56869212 | None:intergenic | 25.0% |
| ! | TGCAAGTGTAAAAATATGTT+TGG | - | chr1_4:56869894-56869913 | Msa0172010:intron | 25.0% |
| !!! | AGAATTGATTTTGACATGTT+TGG | + | chr1_4:56869993-56870012 | None:intergenic | 25.0% |
| ! | CAAGAATACAATTTCCATAT+AGG | + | chr1_4:56870093-56870112 | None:intergenic | 25.0% |
| ! | CAATGTAGGTTATTTATCAT+AGG | - | chr1_4:56870280-56870299 | Msa0172010:intron | 25.0% |
| ! | ATGTAGGTTATTTATCATAG+GGG | - | chr1_4:56870282-56870301 | Msa0172010:intron | 25.0% |
| !!! | GAAATTAAAGTTTTTGGTGT+AGG | - | chr1_4:56870356-56870375 | Msa0172010:intron | 25.0% |
| ! | AATAAAACTTAGGGAATGTT+TGG | + | chr1_4:56870601-56870620 | None:intergenic | 25.0% |
| !!! | TTTTATTTTTAGTTGTGGCT+GGG | - | chr1_4:56871063-56871082 | Msa0172010:intron | 25.0% |
| !!! | TTCTCAGATTTTTGTTTGAA+GGG | - | chr1_4:56871110-56871129 | Msa0172010:intron | 25.0% |
| ! | TCATATTTGAGCTTATATAC+AGG | + | chr1_4:56871711-56871730 | None:intergenic | 25.0% |
| ! | TACACACAATTGCATATAAA+TGG | - | chr1_4:56873061-56873080 | Msa0172010:intron | 25.0% |
| ! | ACACACAATTGCATATAAAT+GGG | - | chr1_4:56873062-56873081 | Msa0172010:intron | 25.0% |
| !! | ATGGGTTATAAATTATACGA+TGG | - | chr1_4:56873080-56873099 | Msa0172010:intron | 25.0% |
| ! | AATAACTGATCTCATCTATT+TGG | - | chr1_4:56873460-56873479 | Msa0172010:CDS | 25.0% |
| ! | AAACAACAAAGGAATTAAGT+TGG | + | chr1_4:56873715-56873734 | None:intergenic | 25.0% |
| !! | ATACTCTTTCTTGACATTTT+TGG | + | chr1_4:56873765-56873784 | None:intergenic | 25.0% |
| ! | ATTCCAATGTAACAAATTGA+AGG | - | chr1_4:56873878-56873897 | Msa0172010:CDS | 25.0% |
| ! | TCTTTAAATAGCACATTCTT+GGG | + | chr1_4:56873924-56873943 | None:intergenic | 25.0% |
| ! | ATCTTTAAATAGCACATTCT+TGG | + | chr1_4:56873925-56873944 | None:intergenic | 25.0% |
| ! | AAACCAATAATTCATCAGTA+CGG | + | chr1_4:56874012-56874031 | None:intergenic | 25.0% |
| ATGTTTGATTGATCGAATTG+GGG | + | chr1_4:56869192-56869211 | None:intergenic | 30.0% | |
| CAATGTTTGATTGATCGAAT+TGG | + | chr1_4:56869194-56869213 | None:intergenic | 30.0% | |
| GAAATTGGGAAAAGAGAATT+TGG | - | chr1_4:56869494-56869513 | Msa0172010:intron | 30.0% | |
| ! | ATCGATTCTAACTTAAAGCT+AGG | + | chr1_4:56869937-56869956 | None:intergenic | 30.0% |
| CATGTTTCATTGAAGTGATT+TGG | - | chr1_4:56870031-56870050 | Msa0172010:intron | 30.0% | |
| !! | CTAGGAAGGTTTTTCAATTT+TGG | - | chr1_4:56870166-56870185 | Msa0172010:intron | 30.0% |
| TCATGATATGTTCACATGTA+AGG | - | chr1_4:56870211-56870230 | Msa0172010:intron | 30.0% | |
| GAAACAAGATATTGCAATGT+AGG | - | chr1_4:56870266-56870285 | Msa0172010:intron | 30.0% | |
| ! | TATTTATCATAGGGGTCTTT+TGG | - | chr1_4:56870290-56870309 | Msa0172010:intron | 30.0% |
| AACTCTCAAACACATTCTTA+AGG | + | chr1_4:56870384-56870403 | None:intergenic | 30.0% | |
| ! | GGACTGGTAAATAAAACTTA+GGG | + | chr1_4:56870610-56870629 | None:intergenic | 30.0% |
| GAGATGAAACAAACATAACA+GGG | + | chr1_4:56870677-56870696 | None:intergenic | 30.0% | |
| AGAGATGAAACAAACATAAC+AGG | + | chr1_4:56870678-56870697 | None:intergenic | 30.0% | |
| GAGTTACATGAAAACAGTAA+TGG | + | chr1_4:56870714-56870733 | None:intergenic | 30.0% | |
| TTTCATGTAACTCTTACACT+TGG | - | chr1_4:56870721-56870740 | Msa0172010:intron | 30.0% | |
| TATGATATGCACGATTCAAT+TGG | - | chr1_4:56870777-56870796 | Msa0172010:intron | 30.0% | |
| !!! | CTTTTATTTTTAGTTGTGGC+TGG | - | chr1_4:56871062-56871081 | Msa0172010:intron | 30.0% |
| !! | CTTCTCAGATTTTTGTTTGA+AGG | - | chr1_4:56871109-56871128 | Msa0172010:intron | 30.0% |
| TTAACGATTTGTGTATCGTA+AGG | - | chr1_4:56871142-56871161 | Msa0172010:intron | 30.0% | |
| GGGCACTTGAAATTATTAAA+TGG | - | chr1_4:56871280-56871299 | Msa0172010:intron | 30.0% | |
| AATTCCACAATACTTTCTAG+GGG | + | chr1_4:56871483-56871502 | None:intergenic | 30.0% | |
| GAATTCCACAATACTTTCTA+GGG | + | chr1_4:56871484-56871503 | None:intergenic | 30.0% | |
| TTCAATAATACGATCCTGTT+TGG | - | chr1_4:56871505-56871524 | Msa0172010:intron | 30.0% | |
| ! | GTCGATTTAATAAGCTATCA+TGG | - | chr1_4:56871596-56871615 | Msa0172010:intron | 30.0% |
| TGAAATAAGTCAATCCAAAC+AGG | - | chr1_4:56871728-56871747 | Msa0172010:intron | 30.0% | |
| TAAGGATTCAAATAGTGTGT+TGG | - | chr1_4:56871763-56871782 | Msa0172010:intron | 30.0% | |
| ! | ATTTTGTTACCAGAAAGAAG+AGG | - | chr1_4:56872189-56872208 | Msa0172010:CDS | 30.0% |
| ! | TTTTGTTACCAGAAAGAAGA+GGG | - | chr1_4:56872190-56872209 | Msa0172010:CDS | 30.0% |
| TGAGAGTGGATATATACTTA+TGG | - | chr1_4:56872222-56872241 | Msa0172010:intron | 30.0% | |
| ATATATACTTATGGTCCGTT+TGG | - | chr1_4:56872231-56872250 | Msa0172010:intron | 30.0% | |
| TTCATATGAAATTAAGCGTC+TGG | + | chr1_4:56872459-56872478 | None:intergenic | 30.0% | |
| TCATGTCTAAATATCTGCTT+TGG | - | chr1_4:56872792-56872811 | Msa0172010:intron | 30.0% | |
| !!! | GACTTTTTAGTTAGGGATAT+AGG | - | chr1_4:56872850-56872869 | Msa0172010:intron | 30.0% |
| ACAATTCTACCATAGATGAT+TGG | - | chr1_4:56873210-56873229 | Msa0172010:intron | 30.0% | |
| !!! | TTACTCTTGCGTAGTTTTAT+TGG | + | chr1_4:56873595-56873614 | None:intergenic | 30.0% |
| !!! | TTTTTGGCTTCTTCTGAATA+TGG | + | chr1_4:56873749-56873768 | None:intergenic | 30.0% |
| TATTCTGCACAAGTGAAAAT+AGG | - | chr1_4:56873782-56873801 | Msa0172010:CDS | 30.0% | |
| AGGCCAGAATATGTATAAAT+CGG | - | chr1_4:56873802-56873821 | Msa0172010:CDS | 30.0% | |
| AACCCGATTTATACATATTC+TGG | + | chr1_4:56873808-56873827 | None:intergenic | 30.0% | |
| !! | GAACCTTCAATTTGTTACAT+TGG | + | chr1_4:56873884-56873903 | None:intergenic | 30.0% |
| TCTTGGGAAAGAAAATCTAA+AGG | + | chr1_4:56873908-56873927 | None:intergenic | 30.0% | |
| TCAATATATTAAGTGGCTTG+AGG | + | chr1_4:56873972-56873991 | None:intergenic | 30.0% | |
| ! | ATACCGTACTGATGAATTAT+TGG | - | chr1_4:56874006-56874025 | Msa0172010:five_prime_UTR | 30.0% |
| ! | GTTTGGTTTAGGTTTGTTTG+GGG | + | chr1_4:56869153-56869172 | None:intergenic | 35.0% |
| ! | CGTTTGGTTTAGGTTTGTTT+GGG | + | chr1_4:56869154-56869173 | None:intergenic | 35.0% |
| ! | TCTAAAATCGCGTTTGGTTT+AGG | + | chr1_4:56869164-56869183 | None:intergenic | 35.0% |
| ! | GGAAAATCTAAAATCGCGTT+TGG | + | chr1_4:56869170-56869189 | None:intergenic | 35.0% |
| TGTTTGATTGATCGAATTGG+GGG | + | chr1_4:56869191-56869210 | None:intergenic | 35.0% | |
| GCATTGGAATATGTGAATTG+GGG | + | chr1_4:56869284-56869303 | None:intergenic | 35.0% | |
| ! | GGCATTGGAATATGTGAATT+GGG | + | chr1_4:56869285-56869304 | None:intergenic | 35.0% |
| ACTAACTTGATATTGCGGAA+CGG | + | chr1_4:56869444-56869463 | None:intergenic | 35.0% | |
| ATTGTGTTGTGTGATTGAAC+AGG | - | chr1_4:56869531-56869550 | Msa0172010:CDS | 35.0% | |
| CATGATGATACAATACCTTC+AGG | + | chr1_4:56869727-56869746 | None:intergenic | 35.0% | |
| ATTGGAAATTTGGTTGTGAG+AGG | - | chr1_4:56869807-56869826 | Msa0172010:intron | 35.0% | |
| GTCAAAATCAATTATGCGTG+AGG | - | chr1_4:56869963-56869982 | Msa0172010:intron | 35.0% | |
| !! | ATTTTGGTCTGTTGAGTGTA+TGG | - | chr1_4:56870182-56870201 | Msa0172010:intron | 35.0% |
| ! | TGTGTTTGAGAGTTGAGTTT+TGG | - | chr1_4:56870390-56870409 | Msa0172010:intron | 35.0% |
| !!! | TTTGAGAGTTGAGTTTTGGA+GGG | - | chr1_4:56870394-56870413 | Msa0172010:intron | 35.0% |
| ! | AATGTTTGGATGGAGAGTTT+TGG | + | chr1_4:56870587-56870606 | None:intergenic | 35.0% |
| AAACTTAGGGAATGTTTGGA+TGG | + | chr1_4:56870597-56870616 | None:intergenic | 35.0% | |
| ! | GGGACTGGTAAATAAAACTT+AGG | + | chr1_4:56870611-56870630 | None:intergenic | 35.0% |
| !!! | TCCCCAGTCTTTTTTGTTTA+TGG | - | chr1_4:56870627-56870646 | Msa0172010:intron | 35.0% |
| CCCATAAACAAAAAAGACTG+GGG | + | chr1_4:56870631-56870650 | None:intergenic | 35.0% | |
| !!! | CCCCAGTCTTTTTTGTTTAT+GGG | - | chr1_4:56870628-56870647 | Msa0172010:intron | 35.0% |
| CCCCATAAACAAAAAAGACT+GGG | + | chr1_4:56870632-56870651 | None:intergenic | 35.0% | |
| !!! | CCCAGTCTTTTTTGTTTATG+GGG | - | chr1_4:56870629-56870648 | Msa0172010:intron | 35.0% |
| ! | GTTTATGGGGCTTATTGTTT+TGG | - | chr1_4:56870642-56870661 | Msa0172010:intron | 35.0% |
| CATGAAAACAGTAATGGTTG+AGG | + | chr1_4:56870708-56870727 | None:intergenic | 35.0% | |
| TAAGAACAAGAGAGGATCAA+CGG | + | chr1_4:56870759-56870778 | None:intergenic | 35.0% | |
| GCATATCATAAGAACAAGAG+AGG | + | chr1_4:56870767-56870786 | None:intergenic | 35.0% | |
| !!! | GGCGATGGATTCTATTTTTT+AGG | - | chr1_4:56870798-56870817 | Msa0172010:intron | 35.0% |
| ACTTACTCTTGCCATGTTAA+AGG | + | chr1_4:56871019-56871038 | None:intergenic | 35.0% | |
| TTTAACATGGCAAGAGTAAG+TGG | - | chr1_4:56871018-56871037 | Msa0172010:intron | 35.0% | |
| TTAACATGGCAAGAGTAAGT+GGG | - | chr1_4:56871019-56871038 | Msa0172010:intron | 35.0% | |
| ! | ATACACTATTTTGTCATCCC+AGG | - | chr1_4:56871218-56871237 | Msa0172010:intron | 35.0% |
| ! | TACACTATTTTGTCATCCCA+GGG | - | chr1_4:56871219-56871238 | Msa0172010:intron | 35.0% |
| TGTGAACAATGAGCAATGAA+TGG | + | chr1_4:56871254-56871273 | None:intergenic | 35.0% | |
| TTTGTTACGGGATCTCAAAT+CGG | - | chr1_4:56871377-56871396 | Msa0172010:intron | 35.0% | |
| CGAATTCCACAATACTTTCT+AGG | + | chr1_4:56871485-56871504 | None:intergenic | 35.0% | |
| AAACTGTTTGGTAGAGCTTA+TGG | + | chr1_4:56871674-56871693 | None:intergenic | 35.0% | |
| GAAACACTAGTGAAACTGTT+TGG | + | chr1_4:56871686-56871705 | None:intergenic | 35.0% | |
| ! | TTCAAATAGTGTGTTGGCAA+AGG | - | chr1_4:56871769-56871788 | Msa0172010:intron | 35.0% |
| ! | TCAAATAGTGTGTTGGCAAA+GGG | - | chr1_4:56871770-56871789 | Msa0172010:intron | 35.0% |
| ATCTGCATTTACATCAAGTC+TGG | - | chr1_4:56872034-56872053 | Msa0172010:intron | 35.0% | |
| CATAAAGTAACCCAGAATGA+AGG | + | chr1_4:56872080-56872099 | None:intergenic | 35.0% | |
| TATTGTTCATACGCTTGTCA+AGG | + | chr1_4:56872375-56872394 | None:intergenic | 35.0% | |
| TATGAAATTAAGCGTCTGGT+TGG | + | chr1_4:56872455-56872474 | None:intergenic | 35.0% | |
| AGGTATCTTTGATCTTGTCT+AGG | - | chr1_4:56872618-56872637 | Msa0172010:intron | 35.0% | |
| TAAGCGAACTGGAAAAACAA+AGG | - | chr1_4:56872651-56872670 | Msa0172010:intron | 35.0% | |
| AAGCGAACTGGAAAAACAAA+GGG | - | chr1_4:56872652-56872671 | Msa0172010:intron | 35.0% | |
| GCTGCTCTTAAAGAAATGAA+TGG | - | chr1_4:56872715-56872734 | Msa0172010:intron | 35.0% | |
| TAGGTTTGCCAAAATCAACA+AGG | - | chr1_4:56872869-56872888 | Msa0172010:intron | 35.0% | |
| !!! | TCAAACCTTGCTGTTGATTT+TGG | + | chr1_4:56872991-56873010 | None:intergenic | 35.0% |
| ! | TCAATGACGGAATTCAACAA+TGG | + | chr1_4:56873156-56873175 | None:intergenic | 35.0% |
| ATTGTTGAATTCCGTCATTG+AGG | - | chr1_4:56873155-56873174 | Msa0172010:intron | 35.0% | |
| GAGTGATATTATCAGCAAGA+AGG | - | chr1_4:56873257-56873276 | Msa0172010:intron | 35.0% | |
| GTAACATGAGTTCCTATCAT+AGG | - | chr1_4:56873279-56873298 | Msa0172010:intron | 35.0% | |
| ACTGATCTCATCTATTTGGA+AGG | - | chr1_4:56873464-56873483 | Msa0172010:CDS | 35.0% | |
| !! | ATCTATTTGGAAGGTGCTTT+GGG | - | chr1_4:56873473-56873492 | Msa0172010:CDS | 35.0% |
| AAACCAAGATATCGAAGTCA+GGG | + | chr1_4:56873549-56873568 | None:intergenic | 35.0% | |
| TAAAACTACGCAAGAGTAAG+TGG | - | chr1_4:56873596-56873615 | Msa0172010:intron | 35.0% | |
| GAGAACTGATTATGATGCAT+TGG | - | chr1_4:56873624-56873643 | Msa0172010:intron | 35.0% | |
| TTCTGCAATGCAAACAACAA+AGG | + | chr1_4:56873726-56873745 | None:intergenic | 35.0% | |
| GGCCAGAATATGTATAAATC+GGG | - | chr1_4:56873803-56873822 | Msa0172010:CDS | 35.0% | |
| ! | AAAGGGTATAACGTGACATA+AGG | + | chr1_4:56874046-56874065 | None:intergenic | 35.0% |
| ! | GCGTTTGGTTTAGGTTTGTT+TGG | + | chr1_4:56869155-56869174 | None:intergenic | 40.0% |
| !! | GGGCATTGGAATATGTGAAT+TGG | + | chr1_4:56869286-56869305 | None:intergenic | 40.0% |
| TTGTTGAAGGTGAAAGGGAA+CGG | + | chr1_4:56869318-56869337 | None:intergenic | 40.0% | |
| AGATGCACAGATAATTACGC+CGG | - | chr1_4:56869573-56869592 | Msa0172010:CDS | 40.0% | |
| ACAATTTCCATATAGGCTCG+TGG | + | chr1_4:56870086-56870105 | None:intergenic | 40.0% | |
| TAACATACGAACGTAGTGAC+TGG | - | chr1_4:56870127-56870146 | Msa0172010:intron | 40.0% | |
| !! | GTTTGAGAGTTGAGTTTTGG+AGG | - | chr1_4:56870393-56870412 | Msa0172010:intron | 40.0% |
| !!! | TTGAGAGTTGAGTTTTGGAG+GGG | - | chr1_4:56870395-56870414 | Msa0172010:intron | 40.0% |
| !! | TTTGGATGGAGAGTTTTGGT+GGG | + | chr1_4:56870583-56870602 | None:intergenic | 40.0% |
| AAACAAAAAAGACTGGGGAC+TGG | + | chr1_4:56870626-56870645 | None:intergenic | 40.0% | |
| GCCCCATAAACAAAAAAGAC+TGG | + | chr1_4:56870633-56870652 | None:intergenic | 40.0% | |
| !!! | GGGCTTATTGTTTTGGAAGT+TGG | - | chr1_4:56870649-56870668 | Msa0172010:intron | 40.0% |
| CTCTTGCCATGTTAAAGGAA+GGG | + | chr1_4:56871014-56871033 | None:intergenic | 40.0% | |
| ACTCTTGCCATGTTAAAGGA+AGG | + | chr1_4:56871015-56871034 | None:intergenic | 40.0% | |
| CGATTTGTGTATCGTAAGGT+AGG | - | chr1_4:56871146-56871165 | Msa0172010:intron | 40.0% | |
| TGAATGGTGAAAGAAACCCT+GGG | + | chr1_4:56871238-56871257 | None:intergenic | 40.0% | |
| ATGAATGGTGAAAGAAACCC+TGG | + | chr1_4:56871239-56871258 | None:intergenic | 40.0% | |
| TGCTCATTGTTCACAAAGCA+CGG | - | chr1_4:56871259-56871278 | Msa0172010:intron | 40.0% | |
| GGATCTCAAATCGGTTGAAT+TGG | - | chr1_4:56871386-56871405 | Msa0172010:intron | 40.0% | |
| AAATCGGTTGAATTGGAGTC+AGG | - | chr1_4:56871393-56871412 | Msa0172010:intron | 40.0% | |
| !! | CTTTCCCCTAGAAAGTATTG+TGG | - | chr1_4:56871476-56871495 | Msa0172010:intron | 40.0% |
| ! | GTTGAGGTGTTTATCCAAAC+AGG | + | chr1_4:56871522-56871541 | None:intergenic | 40.0% |
| ACGCTATAAGTGCTTAGTTG+AGG | + | chr1_4:56871538-56871557 | None:intergenic | 40.0% | |
| AAGCTATCATGGAGAGCTTA+TGG | - | chr1_4:56871607-56871626 | Msa0172010:intron | 40.0% | |
| GAGCTTATGGAAACAGCATA+TGG | + | chr1_4:56871661-56871680 | None:intergenic | 40.0% | |
| TCAATCCAAACAGGCTCATA+TGG | - | chr1_4:56871737-56871756 | Msa0172010:intron | 40.0% | |
| TATTGCCATATGAGCCTGTT+TGG | + | chr1_4:56871745-56871764 | None:intergenic | 40.0% | |
| AACAGGCTCATATGGCAATA+AGG | - | chr1_4:56871745-56871764 | Msa0172010:intron | 40.0% | |
| ! | CAAATAGTGTGTTGGCAAAG+GGG | - | chr1_4:56871771-56871790 | Msa0172010:intron | 40.0% |
| AAATATTCCCACCCATAACG+AGG | - | chr1_4:56871812-56871831 | Msa0172010:intron | 40.0% | |
| AATATTCCCACCCATAACGA+GGG | - | chr1_4:56871813-56871832 | Msa0172010:intron | 40.0% | |
| TCTCACTTATCCCTCGTTAT+GGG | + | chr1_4:56871826-56871845 | None:intergenic | 40.0% | |
| !! | TTTGAAAGCACCCTTATCTC+TGG | + | chr1_4:56871870-56871889 | None:intergenic | 40.0% |
| GTTGACTGATTATTGAGCCA+AGG | - | chr1_4:56871974-56871993 | Msa0172010:intron | 40.0% | |
| CACTAGAGAAGGAAATACCT+TGG | + | chr1_4:56871994-56872013 | None:intergenic | 40.0% | |
| ! | CAAGGTATTTCCTTCTCTAG+TGG | - | chr1_4:56871992-56872011 | Msa0172010:intron | 40.0% |
| TTCACACATTCCACTAGAGA+AGG | + | chr1_4:56872005-56872024 | None:intergenic | 40.0% | |
| CTAATCAGAGCCTTCATTCT+GGG | - | chr1_4:56872067-56872086 | Msa0172010:intron | 40.0% | |
| CTAGTTAACACTTAGCAGAC+AGG | + | chr1_4:56872532-56872551 | None:intergenic | 40.0% | |
| GTTGTTAGAGATAAGCGAAC+TGG | - | chr1_4:56872640-56872659 | Msa0172010:intron | 40.0% | |
| ACTGGAAAAACAAAGGGCTA+TGG | - | chr1_4:56872658-56872677 | Msa0172010:intron | 40.0% | |
| ! | TTTCTTTAAGAGCAGCAGCA+AGG | + | chr1_4:56872711-56872730 | None:intergenic | 40.0% |
| !!! | AGCAGCTTCCTTGTTGATTT+TGG | + | chr1_4:56872880-56872899 | None:intergenic | 40.0% |
| GTTTGCCAAAATCAACAGCA+AGG | - | chr1_4:56872983-56873002 | Msa0172010:intron | 40.0% | |
| ACGGAATTCAACAATGGCAT+TGG | + | chr1_4:56873150-56873169 | None:intergenic | 40.0% | |
| GCTTCTTATTGCCTCAATGA+CGG | + | chr1_4:56873169-56873188 | None:intergenic | 40.0% | |
| CATTGAGGCAATAAGAAGCA+AGG | - | chr1_4:56873170-56873189 | Msa0172010:intron | 40.0% | |
| CATGTCAGCTTTCCTATGAT+AGG | + | chr1_4:56873294-56873313 | None:intergenic | 40.0% | |
| AGCTGACATGTTCTTGTTCT+AGG | - | chr1_4:56873304-56873323 | Msa0172010:intron | 40.0% | |
| ! | TGACATGTTCTTGTTCTAGG+TGG | - | chr1_4:56873307-56873326 | Msa0172010:intron | 40.0% |
| ! | TGTTCTTGTTCTAGGTGGTT+TGG | - | chr1_4:56873312-56873331 | Msa0172010:intron | 40.0% |
| TTTGGACGTGTGGAAAAGAT+AGG | - | chr1_4:56873330-56873349 | Msa0172010:intron | 40.0% | |
| CATGACGACATAATGTCTCA+TGG | + | chr1_4:56873433-56873452 | None:intergenic | 40.0% | |
| !! | CATCTATTTGGAAGGTGCTT+TGG | - | chr1_4:56873472-56873491 | Msa0172010:CDS | 40.0% |
| GAAACCAAGATATCGAAGTC+AGG | + | chr1_4:56873550-56873569 | None:intergenic | 40.0% | |
| GACTTCGATATCTTGGTTTC+AGG | - | chr1_4:56873550-56873569 | Msa0172010:CDS | 40.0% | |
| ! | TTGGTTTCAGGTAAGTACGT+CGG | - | chr1_4:56873562-56873581 | Msa0172010:CDS | 40.0% |
| TGATGCATTGGAGAAACAGA+AGG | - | chr1_4:56873636-56873655 | Msa0172010:intron | 40.0% | |
| AGATGTGTAAACCTCTCGTT+AGG | - | chr1_4:56873941-56873960 | Msa0172010:five_prime_UTR | 40.0% | |
| TGGAACGAATCGTGAATCGA+TGG | + | chr1_4:56869222-56869241 | None:intergenic | 45.0% | |
| TGAGATGATGAGGATGAAGG+TGG | + | chr1_4:56869260-56869279 | None:intergenic | 45.0% | |
| GGTTGAGATGATGAGGATGA+AGG | + | chr1_4:56869263-56869282 | None:intergenic | 45.0% | |
| GAATTGGGGTTGAGATGATG+AGG | + | chr1_4:56869270-56869289 | None:intergenic | 45.0% | |
| TGTTGAAGGTGAAAGGGAAC+GGG | + | chr1_4:56869317-56869336 | None:intergenic | 45.0% | |
| TTCACATTCTCAAGAGCCTC+CGG | + | chr1_4:56869595-56869614 | None:intergenic | 45.0% | |
| CCAAGAAGAAAGCTGTTCCT+CGG | - | chr1_4:56869656-56869675 | Msa0172010:intron | 45.0% | |
| AGGATCCTATTCTTGCAGAG+TGG | - | chr1_4:56869701-56869720 | Msa0172010:intron | 45.0% | |
| TGTGAGAGGTAGTGTGTGTT+TGG | - | chr1_4:56869821-56869840 | Msa0172010:intron | 45.0% | |
| TTCCATATAGGCTCGTGGAA+GGG | + | chr1_4:56870081-56870100 | None:intergenic | 45.0% | |
| TTTCCATATAGGCTCGTGGA+AGG | + | chr1_4:56870082-56870101 | None:intergenic | 45.0% | |
| ! | TAGTGACTGGTTGCGATACT+TGG | - | chr1_4:56870140-56870159 | Msa0172010:intron | 45.0% |
| ! | AGTGACTGGTTGCGATACTT+GGG | - | chr1_4:56870141-56870160 | Msa0172010:intron | 45.0% |
| !! | GTTTGGATGGAGAGTTTTGG+TGG | + | chr1_4:56870584-56870603 | None:intergenic | 45.0% |
| ATGCACGATTCAATTGGCGA+TGG | - | chr1_4:56870783-56870802 | Msa0172010:intron | 45.0% | |
| !! | GATGATTATCGGCTCTTCTG+CGG | - | chr1_4:56870934-56870953 | Msa0172010:intron | 45.0% |
| GCGATTCCCTTCCTTTAACA+TGG | - | chr1_4:56871005-56871024 | Msa0172010:intron | 45.0% | |
| GCTCATTGTTCACAAAGCAC+GGG | - | chr1_4:56871260-56871279 | Msa0172010:intron | 45.0% | |
| !!! | TCAGGTCGAGTTTCTGGTTT+TGG | - | chr1_4:56871411-56871430 | Msa0172010:intron | 45.0% |
| !!! | GGCAAAGGGGTTTTTAAGTG+TGG | - | chr1_4:56871784-56871803 | Msa0172010:intron | 45.0% |
| ACTTATCCCTCGTTATGGGT+GGG | + | chr1_4:56871822-56871841 | None:intergenic | 45.0% | |
| GTCTCACTTATCCCTCGTTA+TGG | + | chr1_4:56871827-56871846 | None:intergenic | 45.0% | |
| TTGAGTGTCCACCAGAGATA+AGG | - | chr1_4:56871856-56871875 | Msa0172010:intron | 45.0% | |
| TGAGTGTCCACCAGAGATAA+GGG | - | chr1_4:56871857-56871876 | Msa0172010:intron | 45.0% | |
| GCTAATCAGAGCCTTCATTC+TGG | - | chr1_4:56872066-56872085 | Msa0172010:intron | 45.0% | |
| ATAACGCACCCTCTTCTTTC+TGG | + | chr1_4:56872201-56872220 | None:intergenic | 45.0% | |
| CTCGTGTGACCAATCATCTA+TGG | + | chr1_4:56873222-56873241 | None:intergenic | 45.0% | |
| TTGGTCACACGAGACAAGAT+AGG | - | chr1_4:56873229-56873248 | Msa0172010:intron | 45.0% | |
| !! | GCTTTGGGTGTTGTTGTAGT+AGG | - | chr1_4:56873488-56873507 | Msa0172010:CDS | 45.0% |
| GTACCCTGACTTCGATATCT+TGG | - | chr1_4:56873543-56873562 | Msa0172010:CDS | 45.0% | |
| CAGGTAAGTACGTCGGAAAT+CGG | - | chr1_4:56873569-56873588 | Msa0172010:CDS | 45.0% | |
| AACTACGCAAGAGTAAGTGG+AGG | - | chr1_4:56873599-56873618 | Msa0172010:intron | 45.0% | |
| ACTACGCAAGAGTAAGTGGA+GGG | - | chr1_4:56873600-56873619 | Msa0172010:intron | 45.0% | |
| TTGAGGCATAACCTAACGAG+AGG | + | chr1_4:56873955-56873974 | None:intergenic | 45.0% | |
| !!! | TAATTTATTTTAATGTATAT+TGG | - | chr1_4:56869789-56869808 | Msa0172010:intron | 5.0% |
| !! | GGTGGTGTCGTCATTGCAAT+TGG | + | chr1_4:56869242-56869261 | None:intergenic | 50.0% |
| AAAGGGAACGGGGAAGTAAG+GGG | + | chr1_4:56869306-56869325 | None:intergenic | 50.0% | |
| GAAAGGGAACGGGGAAGTAA+GGG | + | chr1_4:56869307-56869326 | None:intergenic | 50.0% | |
| TGAAAGGGAACGGGGAAGTA+AGG | + | chr1_4:56869308-56869327 | None:intergenic | 50.0% | |
| GTTGAAGGTGAAAGGGAACG+GGG | + | chr1_4:56869316-56869335 | None:intergenic | 50.0% | |
| ! | GCGGGTTGTTGAAGGTGAAA+GGG | + | chr1_4:56869323-56869342 | None:intergenic | 50.0% |
| ! | TGCGGGTTGTTGAAGGTGAA+AGG | + | chr1_4:56869324-56869343 | None:intergenic | 50.0% |
| TGCACAGATAATTACGCCGG+AGG | - | chr1_4:56869576-56869595 | Msa0172010:intron | 50.0% | |
| GGAGGCTCTTGAGAATGTGA+AGG | - | chr1_4:56869594-56869613 | Msa0172010:intron | 50.0% | |
| GGCTCTTGAGAATGTGAAGG+CGG | - | chr1_4:56869597-56869616 | Msa0172010:intron | 50.0% | |
| CCGAGGAACAGCTTTCTTCT+TGG | + | chr1_4:56869659-56869678 | None:intergenic | 50.0% | |
| GAAAGCTGCAGGTCAAGCTT+GGG | - | chr1_4:56869678-56869697 | Msa0172010:intron | 50.0% | |
| TCAGGCCACTCTGCAAGAAT+AGG | + | chr1_4:56869709-56869728 | None:intergenic | 50.0% | |
| ATTCTTGCAGAGTGGCCTGA+AGG | - | chr1_4:56869709-56869728 | Msa0172010:intron | 50.0% | |
| TTCCCTTCCACGAGCCTATA+TGG | - | chr1_4:56870076-56870095 | Msa0172010:intron | 50.0% | |
| !! | GAGTTTTGGTGGGTAGAGGA+GGG | + | chr1_4:56870573-56870592 | None:intergenic | 50.0% |
| !! | AGAGTTTTGGTGGGTAGAGG+AGG | + | chr1_4:56870574-56870593 | None:intergenic | 50.0% |
| !! | TGGAGAGTTTTGGTGGGTAG+AGG | + | chr1_4:56870577-56870596 | None:intergenic | 50.0% |
| TTGGAGTCAGGTCGAGTTTC+TGG | - | chr1_4:56871405-56871424 | Msa0172010:intron | 50.0% | |
| CACTTATCCCTCGTTATGGG+TGG | + | chr1_4:56871823-56871842 | None:intergenic | 50.0% | |
| !! | GAAAGCACCCTTATCTCTGG+TGG | + | chr1_4:56871867-56871886 | None:intergenic | 50.0% |
| ! | GAGGGTGCGTTATTTGAGAG+TGG | - | chr1_4:56872208-56872227 | Msa0172010:CDS | 50.0% |
| ! | TTCTAGGTGGTTTGGACGTG+TGG | - | chr1_4:56873320-56873339 | Msa0172010:intron | 50.0% |
| ! | AACGGGGAAGTAAGGGGCAT+TGG | + | chr1_4:56869300-56869319 | None:intergenic | 55.0% |
| ! | AGGTGGTTGCGGGTTGTTGA+AGG | + | chr1_4:56869331-56869350 | None:intergenic | 55.0% |
| CTCAACGTCGCTACTCGCAA+TGG | + | chr1_4:56869623-56869642 | None:intergenic | 55.0% | |
| GGAAAGCTGCAGGTCAAGCT+TGG | - | chr1_4:56869677-56869696 | Msa0172010:intron | 55.0% | |
| GGTTGCGATACTTGGGAGCT+AGG | - | chr1_4:56870148-56870167 | Msa0172010:intron | 55.0% | |
| GCGATACTTGGGAGCTAGGA+AGG | - | chr1_4:56870152-56870171 | Msa0172010:intron | 55.0% | |
| !! | TTGGAGGGGAGCACTTTAGC+AGG | - | chr1_4:56870409-56870428 | Msa0172010:intron | 55.0% |
| GGCTCTTCTGCGGTGATCTT+GGG | - | chr1_4:56870944-56870963 | Msa0172010:intron | 55.0% | |
| GCGTAGTGAGAGGTGGTTGC+GGG | + | chr1_4:56869341-56869360 | None:intergenic | 60.0% | |
| GGCGTAGTGAGAGGTGGTTG+CGG | + | chr1_4:56869342-56869361 | None:intergenic | 60.0% | |
| CTTCCTCCGCCGCCAATTGT+CGG | - | chr1_4:56869392-56869411 | Msa0172010:CDS | 60.0% | |
| TAAGCAGCAGGCGGTGGAAC+GGG | + | chr1_4:56869419-56869438 | None:intergenic | 60.0% | |
| GTAAGCAGCAGGCGGTGGAA+CGG | + | chr1_4:56869420-56869439 | None:intergenic | 60.0% | |
| GGAACGGAGTAAGCAGCAGG+CGG | + | chr1_4:56869428-56869447 | None:intergenic | 60.0% | |
| TGCGGAACGGAGTAAGCAGC+AGG | + | chr1_4:56869431-56869450 | None:intergenic | 60.0% | |
| GCTGTTCCTCGGAAAGCTGC+AGG | - | chr1_4:56869667-56869686 | Msa0172010:intron | 60.0% | |
| GCTTGACCTGCAGCTTTCCG+AGG | + | chr1_4:56869676-56869695 | None:intergenic | 60.0% | |
| AGCTGCAGGTCAAGCTTGGG+AGG | - | chr1_4:56869681-56869700 | Msa0172010:intron | 60.0% | |
| CGGCTCTTCTGCGGTGATCT+TGG | - | chr1_4:56870943-56870962 | Msa0172010:intron | 60.0% | |
| AGCAGCAAGGTCAGCAGGGT+TGG | + | chr1_4:56872698-56872717 | None:intergenic | 60.0% | |
| GAGCAGCAGCAAGGTCAGCA+GGG | + | chr1_4:56872702-56872721 | None:intergenic | 60.0% | |
| AGAGCAGCAGCAAGGTCAGC+AGG | + | chr1_4:56872703-56872722 | None:intergenic | 60.0% | |
| GTAGGGTGCGGCGTAGTGAG+AGG | + | chr1_4:56869351-56869370 | None:intergenic | 65.0% | |
| GGAACGGGGCCGACAATTGG+CGG | + | chr1_4:56869404-56869423 | None:intergenic | 65.0% | |
| GGTGGAACGGGGCCGACAAT+TGG | + | chr1_4:56869407-56869426 | None:intergenic | 65.0% | |
| AAGCAGCAGGCGGTGGAACG+GGG | + | chr1_4:56869418-56869437 | None:intergenic | 65.0% | |
| ACGGAGTAAGCAGCAGGCGG+TGG | + | chr1_4:56869425-56869444 | None:intergenic | 65.0% | |
| GGGTGCGGCGTAGTGAGAGG+TGG | + | chr1_4:56869348-56869367 | None:intergenic | 70.0% | |
| TGGCGGCGGAGGAAGCTGCA+CGG | + | chr1_4:56869387-56869406 | None:intergenic | 70.0% | |
| ACGGGGCCGACAATTGGCGG+CGG | + | chr1_4:56869401-56869420 | None:intergenic | 70.0% | |
| GGGGGTGGCGACGTAGGGTG+CGG | + | chr1_4:56869363-56869382 | None:intergenic | 75.0% | |
| ACGGCGGGGGTGGCGACGTA+GGG | + | chr1_4:56869368-56869387 | None:intergenic | 75.0% | |
| AGGAAGCTGCACGGCGGGGG+TGG | + | chr1_4:56869378-56869397 | None:intergenic | 75.0% | |
| CGGAGGAAGCTGCACGGCGG+GGG | + | chr1_4:56869381-56869400 | None:intergenic | 75.0% | |
| GCGGAGGAAGCTGCACGGCG+GGG | + | chr1_4:56869382-56869401 | None:intergenic | 75.0% | |
| GGCGGAGGAAGCTGCACGGC+GGG | + | chr1_4:56869383-56869402 | None:intergenic | 75.0% | |
| CGGCGGAGGAAGCTGCACGG+CGG | + | chr1_4:56869384-56869403 | None:intergenic | 75.0% | |
| GGGCCGACAATTGGCGGCGG+AGG | + | chr1_4:56869398-56869417 | None:intergenic | 75.0% | |
| ! | CACGGCGGGGGTGGCGACGT+AGG | + | chr1_4:56869369-56869388 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 56869088 | 56874078 | 56869088 | ID=Msa0172010;Name=Msa0172010 |
| chr1_4 | mRNA | 56869088 | 56874078 | 56869088 | ID=Msa0172010-mRNA-1;Parent=Msa0172010;Name=Msa0172010-mRNA-1;_AED=0.16;_eAED=0.16;_QI=160|1|1|1|1|1|6|281|240 |
| chr1_4 | exon | 56869088 | 56869422 | 56869088 | ID=Msa0172010-mRNA-1:exon:17288;Parent=Msa0172010-mRNA-1 |
| chr1_4 | exon | 56869509 | 56869594 | 56869509 | ID=Msa0172010-mRNA-1:exon:17287;Parent=Msa0172010-mRNA-1 |
| chr1_4 | exon | 56870430 | 56870526 | 56870430 | ID=Msa0172010-mRNA-1:exon:17286;Parent=Msa0172010-mRNA-1 |
| chr1_4 | exon | 56872134 | 56872231 | 56872134 | ID=Msa0172010-mRNA-1:exon:17285;Parent=Msa0172010-mRNA-1 |
| chr1_4 | exon | 56873436 | 56873613 | 56873436 | ID=Msa0172010-mRNA-1:exon:17284;Parent=Msa0172010-mRNA-1 |
| chr1_4 | exon | 56873709 | 56874078 | 56873709 | ID=Msa0172010-mRNA-1:exon:17283;Parent=Msa0172010-mRNA-1 |
| chr1_4 | five_prime_UTR | 56873919 | 56874078 | 56873919 | ID=Msa0172010-mRNA-1:five_prime_utr;Parent=Msa0172010-mRNA-1 |
| chr1_4 | CDS | 56873709 | 56873918 | 56873709 | ID=Msa0172010-mRNA-1:cds;Parent=Msa0172010-mRNA-1 |
| chr1_4 | CDS | 56873436 | 56873613 | 56873436 | ID=Msa0172010-mRNA-1:cds;Parent=Msa0172010-mRNA-1 |
| chr1_4 | CDS | 56872134 | 56872231 | 56872134 | ID=Msa0172010-mRNA-1:cds;Parent=Msa0172010-mRNA-1 |
| chr1_4 | CDS | 56870430 | 56870526 | 56870430 | ID=Msa0172010-mRNA-1:cds;Parent=Msa0172010-mRNA-1 |
| chr1_4 | CDS | 56869509 | 56869594 | 56869509 | ID=Msa0172010-mRNA-1:cds;Parent=Msa0172010-mRNA-1 |
| chr1_4 | CDS | 56869369 | 56869422 | 56869369 | ID=Msa0172010-mRNA-1:cds;Parent=Msa0172010-mRNA-1 |
| chr1_4 | three_prime_UTR | 56869088 | 56869368 | 56869088 | ID=Msa0172010-mRNA-1:three_prime_utr;Parent=Msa0172010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
