Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1412060 | sp|Q0P5L0|RBM42_BOVIN | 70.588 | 102 | 30 | 0 | 112 | 213 | 329 | 430 | 7.63e-50 | 172 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1412060 | G7I6S0 | 99.583 | 240 | 1 | 0 | 1 | 240 | 1 | 240 | 2.78e-176 | 493 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031990 | Msa1412060 | 0.912465 | 1.887881e-83 | -8.615850e-47 |
| Msa0039900 | Msa1412060 | 0.806554 | 7.776266e-50 | -8.615850e-47 |
| Msa0079270 | Msa1412060 | 0.862118 | 6.352732e-64 | -8.615850e-47 |
| Msa1412060 | Msa1432620 | 0.913513 | 5.640057e-84 | -8.615850e-47 |
| Msa1412060 | Msa1445390 | 0.801039 | 1.086871e-48 | -8.615850e-47 |
| Msa0126920 | Msa1412060 | 0.964611 | 1.519243e-123 | -8.615850e-47 |
| Msa0140500 | Msa1412060 | 0.800489 | 1.406853e-48 | -8.615850e-47 |
| Msa0172010 | Msa1412060 | 0.869603 | 2.735960e-66 | -8.615850e-47 |
| Msa0381610 | Msa1412060 | 0.821307 | 4.328633e-53 | -8.615850e-47 |
| Msa0464680 | Msa1412060 | -0.805861 | 1.088049e-49 | -8.615850e-47 |
| Msa0466840 | Msa1412060 | 0.801335 | 9.454254e-49 | -8.615850e-47 |
| Msa1196440 | Msa1412060 | -0.802802 | 4.720439e-49 | -8.615850e-47 |
| Msa1199830 | Msa1412060 | 0.855261 | 7.105059e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1412060 | MtrunA17_Chr1g0190211 | 99.583 | 240 | 1 | 0 | 1 | 240 | 1 | 240 | 5.35e-180 | 493 |
| Msa1412060 | MtrunA17_Chr1g0153871 | 36.782 | 87 | 54 | 1 | 131 | 216 | 189 | 275 | 4.23e-15 | 73.9 |
| Msa1412060 | MtrunA17_Chr3g0139111 | 41.892 | 74 | 43 | 0 | 132 | 205 | 145 | 218 | 1.31e-14 | 72.4 |
| Msa1412060 | MtrunA17_Chr1g0177101 | 27.429 | 175 | 101 | 5 | 54 | 206 | 111 | 281 | 2.40e-14 | 71.2 |
| Msa1412060 | MtrunA17_Chr3g0133651 | 36.782 | 87 | 54 | 1 | 131 | 216 | 186 | 272 | 2.97e-14 | 71.2 |
| Msa1412060 | MtrunA17_Chr2g0328791 | 37.931 | 87 | 53 | 1 | 131 | 216 | 107 | 193 | 3.05e-14 | 71.2 |
| Msa1412060 | MtrunA17_Chr4g0074711 | 43.421 | 76 | 42 | 1 | 131 | 205 | 166 | 241 | 4.63e-14 | 70.9 |
| Msa1412060 | MtrunA17_Chr8g0344491 | 32.381 | 105 | 68 | 1 | 132 | 236 | 147 | 248 | 5.43e-14 | 70.5 |
| Msa1412060 | MtrunA17_Chr4g0070231 | 37.838 | 74 | 46 | 0 | 132 | 205 | 131 | 204 | 7.18e-14 | 70.1 |
| Msa1412060 | MtrunA17_Chr4g0045221 | 40.789 | 76 | 44 | 1 | 131 | 205 | 213 | 288 | 1.16e-13 | 69.7 |
| Msa1412060 | MtrunA17_Chr2g0288251 | 39.474 | 76 | 45 | 1 | 131 | 205 | 154 | 229 | 2.54e-12 | 65.9 |
| Msa1412060 | MtrunA17_Chr4g0035031 | 31.646 | 79 | 54 | 0 | 131 | 209 | 7 | 85 | 4.48e-12 | 63.2 |
| Msa1412060 | MtrunA17_Chr4g0035001 | 30.380 | 79 | 55 | 0 | 131 | 209 | 5 | 83 | 8.50e-12 | 61.6 |
| Msa1412060 | MtrunA17_Chr4g0035051 | 29.114 | 79 | 56 | 0 | 131 | 209 | 7 | 85 | 1.58e-11 | 59.7 |
| Msa1412060 | MtrunA17_Chr7g0267571 | 30.189 | 106 | 73 | 1 | 132 | 236 | 212 | 317 | 8.40e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1412060 | AT3G04500.1 | 77.665 | 197 | 40 | 3 | 45 | 240 | 52 | 245 | 1.40e-110 | 318 |
| Msa1412060 | AT3G04500.3 | 76.471 | 119 | 24 | 3 | 45 | 162 | 52 | 167 | 3.32e-60 | 188 |
| Msa1412060 | AT3G04500.2 | 80.180 | 111 | 19 | 2 | 55 | 164 | 61 | 169 | 3.38e-60 | 187 |
| Msa1412060 | AT3G14100.1 | 43.243 | 74 | 42 | 0 | 132 | 205 | 144 | 217 | 1.87e-15 | 75.5 |
| Msa1412060 | AT1G54080.1 | 44.595 | 74 | 41 | 0 | 132 | 205 | 148 | 221 | 2.41e-15 | 75.1 |
| Msa1412060 | AT1G17370.1 | 35.484 | 93 | 57 | 1 | 132 | 224 | 139 | 228 | 5.84e-15 | 73.9 |
| Msa1412060 | AT1G17370.2 | 35.484 | 93 | 57 | 1 | 132 | 224 | 139 | 228 | 6.20e-15 | 73.9 |
| Msa1412060 | AT5G54900.1 | 43.421 | 76 | 42 | 1 | 131 | 205 | 153 | 228 | 3.31e-14 | 71.6 |
| Msa1412060 | AT3G19130.1 | 43.421 | 76 | 42 | 1 | 131 | 205 | 201 | 276 | 4.20e-14 | 71.2 |
| Msa1412060 | AT4G27000.1 | 41.975 | 81 | 44 | 2 | 125 | 204 | 168 | 246 | 8.42e-14 | 70.5 |
| Msa1412060 | AT1G11650.1 | 42.105 | 76 | 43 | 1 | 131 | 205 | 154 | 229 | 8.46e-14 | 69.7 |
| Msa1412060 | AT1G54080.2 | 42.308 | 78 | 41 | 1 | 132 | 205 | 148 | 225 | 8.77e-14 | 70.5 |
| Msa1412060 | AT1G11650.2 | 42.105 | 76 | 43 | 1 | 131 | 205 | 154 | 229 | 1.91e-13 | 69.3 |
| Msa1412060 | AT5G19350.2 | 40.789 | 76 | 44 | 1 | 131 | 205 | 115 | 190 | 2.58e-13 | 68.9 |
| Msa1412060 | AT5G19350.1 | 40.789 | 76 | 44 | 1 | 131 | 205 | 115 | 190 | 2.60e-13 | 68.9 |
| Msa1412060 | AT1G47490.2 | 35.632 | 87 | 55 | 1 | 131 | 216 | 196 | 282 | 1.00e-12 | 67.0 |
| Msa1412060 | AT3G23830.2 | 32.039 | 103 | 67 | 1 | 106 | 205 | 6 | 108 | 1.43e-12 | 63.5 |
| Msa1412060 | AT3G23830.1 | 32.039 | 103 | 67 | 1 | 106 | 205 | 6 | 108 | 1.43e-12 | 63.5 |
| Msa1412060 | AT1G49600.3 | 40.789 | 76 | 44 | 1 | 131 | 205 | 212 | 287 | 1.49e-12 | 67.0 |
| Msa1412060 | AT1G49600.2 | 40.789 | 76 | 44 | 1 | 131 | 205 | 212 | 287 | 1.49e-12 | 67.0 |
| Msa1412060 | AT1G49600.1 | 40.789 | 76 | 44 | 1 | 131 | 205 | 212 | 287 | 1.62e-12 | 66.6 |
| Msa1412060 | AT1G47490.1 | 35.632 | 87 | 55 | 1 | 131 | 216 | 196 | 282 | 2.40e-12 | 66.2 |
| Msa1412060 | AT4G39260.3 | 30.952 | 84 | 58 | 0 | 128 | 211 | 2 | 85 | 5.91e-12 | 60.5 |
| Msa1412060 | AT4G39260.2 | 30.488 | 82 | 57 | 0 | 128 | 209 | 2 | 83 | 6.44e-12 | 61.6 |
| Msa1412060 | AT1G47500.2 | 38.158 | 76 | 46 | 1 | 131 | 205 | 198 | 273 | 7.64e-12 | 64.3 |
| Msa1412060 | AT1G47500.1 | 38.158 | 76 | 46 | 1 | 131 | 205 | 198 | 273 | 1.29e-11 | 63.9 |
| Msa1412060 | AT4G39260.1 | 30.488 | 82 | 57 | 0 | 128 | 209 | 2 | 83 | 1.53e-11 | 61.6 |
| Msa1412060 | AT1G71770.1 | 23.741 | 139 | 100 | 3 | 79 | 212 | 284 | 421 | 5.75e-11 | 62.4 |
| Msa1412060 | AT1G71770.2 | 23.741 | 139 | 100 | 3 | 79 | 212 | 284 | 421 | 5.75e-11 | 62.4 |
| Msa1412060 | AT1G58470.2 | 34.177 | 79 | 50 | 1 | 130 | 208 | 4 | 80 | 9.56e-11 | 61.2 |
| Msa1412060 | AT1G58470.1 | 34.177 | 79 | 50 | 1 | 130 | 208 | 4 | 80 | 9.56e-11 | 61.2 |
Find 104 sgRNAs with CRISPR-Local
Find 325 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTACTCTTGCCATGTTAA+AGG | 0.192434 | tig0023869:-30876 | None:intergenic |
| ATACCGTACTGATGAATTAT+TGG | 0.195169 | tig0023869:+33867 | Msa1412060:three_prime_UTR |
| CCGAGGAACAGCTTTCTTCT+TGG | 0.222688 | tig0023869:-29516 | None:intergenic |
| CGGCTCTTCTGCGGTGATCT+TGG | 0.238216 | tig0023869:+30803 | Msa1412060:CDS |
| TCTAAAATCGCGTTTGGTTT+AGG | 0.252268 | tig0023869:-29021 | None:intergenic |
| AACCCGATTTATACATATTC+TGG | 0.256077 | tig0023869:-33666 | None:intergenic |
| ATCTTTAAATAGCACATTCT+TGG | 0.265302 | tig0023869:-33783 | None:intergenic |
| TAAGCAGCAGGCGGTGGAAC+GGG | 0.268956 | tig0023869:-29276 | None:intergenic |
| CGTTTGGTTTAGGTTTGTTT+GGG | 0.272698 | tig0023869:-29011 | None:intergenic |
| TTGTATAATCAGATGATTAT+CGG | 0.298287 | tig0023869:+30783 | Msa1412060:intron |
| GCGTTTGGTTTAGGTTTGTT+TGG | 0.326023 | tig0023869:-29012 | None:intergenic |
| GGCATTGGAATATGTGAATT+GGG | 0.328527 | tig0023869:-29142 | None:intergenic |
| CAATGTTTGATTGATCGAAT+TGG | 0.330230 | tig0023869:-29051 | None:intergenic |
| GGCTCTTCTGCGGTGATCTT+GGG | 0.342878 | tig0023869:+30804 | Msa1412060:CDS |
| TATTCTGCACAAGTGAAAAT+AGG | 0.344778 | tig0023869:+33643 | Msa1412060:exon |
| AGGCCAGAATATGTATAAAT+CGG | 0.347367 | tig0023869:+33663 | Msa1412060:three_prime_UTR |
| CGGAGGAAGCTGCACGGCGG+GGG | 0.354638 | tig0023869:-29238 | None:intergenic |
| CTTCCTCCGCCGCCAATTGT+CGG | 0.356289 | tig0023869:+29252 | Msa1412060:CDS |
| AATGTTTGATTGATCGAATT+GGG | 0.378975 | tig0023869:-29050 | None:intergenic |
| TGTTGAAGGTGAAAGGGAAC+GGG | 0.379503 | tig0023869:-29174 | None:intergenic |
| GGCGGAGGAAGCTGCACGGC+GGG | 0.390499 | tig0023869:-29240 | None:intergenic |
| AGCAGCAAGGTCAGCAGGGT+TGG | 0.390729 | tig0023869:-32556 | None:intergenic |
| GGAAAATCTAAAATCGCGTT+TGG | 0.394601 | tig0023869:-29027 | None:intergenic |
| CAGGTAAGTACGTCGGAAAT+CGG | 0.399897 | tig0023869:+33430 | Msa1412060:intron |
| GGGCATTGGAATATGTGAAT+TGG | 0.406105 | tig0023869:-29143 | None:intergenic |
| TCTTTAAATAGCACATTCTT+GGG | 0.409087 | tig0023869:-33782 | None:intergenic |
| GGTGGAACGGGGCCGACAAT+TGG | 0.409141 | tig0023869:-29264 | None:intergenic |
| TGAAAGGGAACGGGGAAGTA+AGG | 0.412150 | tig0023869:-29165 | None:intergenic |
| AGAGCAGCAGCAAGGTCAGC+AGG | 0.413814 | tig0023869:-32561 | None:intergenic |
| GGGCCGACAATTGGCGGCGG+AGG | 0.430346 | tig0023869:-29255 | None:intergenic |
| GCGGAGGAAGCTGCACGGCG+GGG | 0.443060 | tig0023869:-29239 | None:intergenic |
| GCGTAGTGAGAGGTGGTTGC+GGG | 0.445928 | tig0023869:-29198 | None:intergenic |
| CGGCGGAGGAAGCTGCACGG+CGG | 0.453429 | tig0023869:-29241 | None:intergenic |
| GGAACGGGGCCGACAATTGG+CGG | 0.457314 | tig0023869:-29261 | None:intergenic |
| ATTCCAATGTAACAAATTGA+AGG | 0.458975 | tig0023869:+33739 | Msa1412060:three_prime_UTR |
| GAAAGCTGCTGGTCAAGCTT+GGG | 0.460458 | tig0023869:+29538 | Msa1412060:CDS |
| AACGGGGAAGTAAGGGGCAT+TGG | 0.463371 | tig0023869:-29157 | None:intergenic |
| GGAAAGCTGCTGGTCAAGCT+TGG | 0.464391 | tig0023869:+29537 | Msa1412060:CDS |
| ATATTTGTCAATATATTAAG+TGG | 0.464632 | tig0023869:-33837 | None:intergenic |
| TCAGGCCACTCTGCAAGAAT+AGG | 0.467965 | tig0023869:-29566 | None:intergenic |
| TGCGGGTTGTTGAAGGTGAA+AGG | 0.471510 | tig0023869:-29181 | None:intergenic |
| GGTGGTGTCGTCATTGCAAT+TGG | 0.472771 | tig0023869:-29099 | None:intergenic |
| GTTGTTAGAGATAAGCGAAC+TGG | 0.476084 | tig0023869:+32501 | Msa1412060:CDS |
| AGATGTGTAAACCTCTCGTT+AGG | 0.479688 | tig0023869:+33802 | Msa1412060:three_prime_UTR |
| AGGTGGTTGCGGGTTGTTGA+AGG | 0.484864 | tig0023869:-29188 | None:intergenic |
| GCTGTTCCTCGGAAAGCTGC+TGG | 0.484908 | tig0023869:+29527 | Msa1412060:CDS |
| ACGGAGTAAGCAGCAGGCGG+TGG | 0.487179 | tig0023869:-29282 | None:intergenic |
| AAAGGGAACGGGGAAGTAAG+GGG | 0.493709 | tig0023869:-29163 | None:intergenic |
| GGCCAGAATATGTATAAATC+GGG | 0.496131 | tig0023869:+33664 | Msa1412060:three_prime_UTR |
| GTAAGCAGCAGGCGGTGGAA+CGG | 0.496822 | tig0023869:-29277 | None:intergenic |
| GAGAACTGATTATGATGCAT+TGG | 0.497577 | tig0023869:+33485 | Msa1412060:CDS |
| AAAGGGTATAACGTGACATA+AGG | 0.500921 | tig0023869:-33904 | None:intergenic |
| GAACCTTCAATTTGTTACAT+TGG | 0.502282 | tig0023869:-33742 | None:intergenic |
| TAAAACTACGCAAGAGTAAG+TGG | 0.505433 | tig0023869:+33457 | Msa1412060:CDS |
| AACTTTGGAACAGCATTCAA+AGG | 0.506140 | tig0023869:-33922 | None:intergenic |
| TTGTTGAAGGTGAAAGGGAA+CGG | 0.508796 | tig0023869:-29175 | None:intergenic |
| CTCTCGTTAGGTTATGCCTC+AGG | 0.513013 | tig0023869:+33814 | Msa1412060:three_prime_UTR |
| GAAAGGGAACGGGGAAGTAA+GGG | 0.516807 | tig0023869:-29164 | None:intergenic |
| ACTCTTGCCATGTTAAAGGA+AGG | 0.519304 | tig0023869:-30872 | None:intergenic |
| TGCGGAACGGAGTAAGCAGC+AGG | 0.541336 | tig0023869:-29288 | None:intergenic |
| ACTTTGGAACAGCATTCAAA+GGG | 0.543033 | tig0023869:-33921 | None:intergenic |
| GCGGGTTGTTGAAGGTGAAA+GGG | 0.543608 | tig0023869:-29180 | None:intergenic |
| AGCTGCTGGTCAAGCTTGGG+AGG | 0.546251 | tig0023869:+29541 | Msa1412060:CDS |
| CTCTTGCCATGTTAAAGGAA+GGG | 0.550026 | tig0023869:-30871 | None:intergenic |
| TTCACATTCTCAAGAGCCTC+CGG | 0.552039 | tig0023869:-29452 | None:intergenic |
| GCGATTCCCTTCCTTTAACA+TGG | 0.564587 | tig0023869:+30865 | Msa1412060:CDS |
| AAGCAGCAGGCGGTGGAACG+GGG | 0.570100 | tig0023869:-29275 | None:intergenic |
| CCAAGAAGAAAGCTGTTCCT+CGG | 0.572765 | tig0023869:+29516 | Msa1412060:CDS |
| GGCGTAGTGAGAGGTGGTTG+CGG | 0.577840 | tig0023869:-29199 | None:intergenic |
| TCTTGGGAAAGAAAATCTAA+AGG | 0.578652 | tig0023869:-33766 | None:intergenic |
| CTCAACGTCGCTACTCGCAA+TGG | 0.579241 | tig0023869:-29480 | None:intergenic |
| AAACCAATAATTCATCAGTA+CGG | 0.589880 | tig0023869:-33870 | None:intergenic |
| GTTGAAGGTGAAAGGGAACG+GGG | 0.590747 | tig0023869:-29173 | None:intergenic |
| GCTGCTCTTAAAGAAATGAA+TGG | 0.593104 | tig0023869:+32576 | Msa1412060:CDS |
| ATTCTTGCAGAGTGGCCTGA+AGG | 0.594669 | tig0023869:+29569 | Msa1412060:CDS |
| GCTTGACCAGCAGCTTTCCG+AGG | 0.598696 | tig0023869:-29533 | None:intergenic |
| ATGTTTGATTGATCGAATTG+GGG | 0.604585 | tig0023869:-29049 | None:intergenic |
| GAGCAGCAGCAAGGTCAGCA+GGG | 0.605494 | tig0023869:-32560 | None:intergenic |
| GTAGGGTGCGGCGTAGTGAG+AGG | 0.607879 | tig0023869:-29208 | None:intergenic |
| GATGATTATCGGCTCTTCTG+CGG | 0.609558 | tig0023869:+30794 | Msa1412060:intron |
| GGGTGCGGCGTAGTGAGAGG+TGG | 0.612059 | tig0023869:-29205 | None:intergenic |
| GGCTCTTGAGAATGTGAAGG+CGG | 0.612668 | tig0023869:+29457 | Msa1412060:CDS |
| ACGGGGCCGACAATTGGCGG+CGG | 0.614773 | tig0023869:-29258 | None:intergenic |
| GGTTGAGATGATGAGGATGA+AGG | 0.616374 | tig0023869:-29120 | None:intergenic |
| TGGAACGAATCGTGAATCGA+TGG | 0.619092 | tig0023869:-29079 | None:intergenic |
| TGATGCATTGGAGAAACAGA+AGG | 0.623280 | tig0023869:+33497 | Msa1412060:CDS |
| TGGCGGCGGAGGAAGCTGCA+CGG | 0.623515 | tig0023869:-29244 | None:intergenic |
| GCATTGGAATATGTGAATTG+GGG | 0.628373 | tig0023869:-29141 | None:intergenic |
| GTTTGGTTTAGGTTTGTTTG+GGG | 0.629522 | tig0023869:-29010 | None:intergenic |
| TTTCTTTAAGAGCAGCAGCA+AGG | 0.635705 | tig0023869:-32569 | None:intergenic |
| TCAATATATTAAGTGGCCTG+AGG | 0.638944 | tig0023869:-33830 | None:intergenic |
| AACTACGCAAGAGTAAGTGG+AGG | 0.640310 | tig0023869:+33460 | Msa1412060:CDS |
| TGTTTGATTGATCGAATTGG+GGG | 0.641436 | tig0023869:-29048 | None:intergenic |
| GGAGGCTCTTGAGAATGTGA+AGG | 0.648124 | tig0023869:+29454 | Msa1412060:CDS |
| TTGGTTTCAGGTAAGTACGT+CGG | 0.656926 | tig0023869:+33423 | Msa1412060:intron |
| TGAGATGATGAGGATGAAGG+TGG | 0.660814 | tig0023869:-29117 | None:intergenic |
| AGGATCCTATTCTTGCAGAG+TGG | 0.663088 | tig0023869:+29561 | Msa1412060:CDS |
| TGCACAGATAATTACGCCGG+AGG | 0.666682 | tig0023869:+29436 | Msa1412060:CDS |
| ACTACGCAAGAGTAAGTGGA+GGG | 0.675815 | tig0023869:+33461 | Msa1412060:CDS |
| GAATTGGGGTTGAGATGATG+AGG | 0.677929 | tig0023869:-29127 | None:intergenic |
| AGATGCACAGATAATTACGC+CGG | 0.679077 | tig0023869:+29433 | Msa1412060:CDS |
| CTGAGGCATAACCTAACGAG+AGG | 0.680329 | tig0023869:-33813 | None:intergenic |
| ACTAACTTGATATTGCGGAA+CGG | 0.692194 | tig0023869:-29301 | None:intergenic |
| GGAACGGAGTAAGCAGCAGG+CGG | 0.735035 | tig0023869:-29285 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATCTAAAATCTAAAAAT+TGG | - | tig0023869:28959-28978 | None:intergenic | 10.0% |
| !! | AAATAAATTAATTAACGAAT+TGG | - | tig0023869:29639-29658 | None:intergenic | 10.0% |
| !!! | AATTATATTTTTGTAAACAA+TGG | - | tig0023869:31969-31988 | None:intergenic | 10.0% |
| !!! | AACATAAAAACTTTTTTATT+TGG | - | tig0023869:32154-32173 | None:intergenic | 10.0% |
| !! | AATGTGAAAATTAAAAATAA+TGG | - | tig0023869:32367-32386 | None:intergenic | 10.0% |
| !!! | AAATTATCAATTTAGAATAT+GGG | + | tig0023869:32871-32890 | Msa1412060:intron | 10.0% |
| !!! | TTCTTTTATACATAAATAAA+TGG | + | tig0023869:32972-32991 | Msa1412060:intron | 10.0% |
| !!! | ATTTTAGAATAAGAAAATTC+TGG | + | tig0023869:28974-28993 | Msa1412060:five_prime_UTR | 15.0% |
| !! | TTTAATGTATATTGGAAATT+TGG | + | tig0023869:29657-29676 | Msa1412060:intron | 15.0% |
| !!! | TATATCTGATATTTTTTGAA+AGG | + | tig0023869:30316-30335 | Msa1412060:intron | 15.0% |
| !!! | AATTCTTTTATTTTTAGTTG+TGG | + | tig0023869:30918-30937 | Msa1412060:intron | 15.0% |
| !!! | TTCATAATTTACATTTTATC+AGG | + | tig0023869:31035-31054 | Msa1412060:intron | 15.0% |
| !!! | GTTATTTATTTTGTTTGTTA+CGG | + | tig0023869:31224-31243 | Msa1412060:intron | 15.0% |
| !!! | TTATTTATTTTGTTTGTTAC+GGG | + | tig0023869:31225-31244 | Msa1412060:intron | 15.0% |
| !! | AAACTTGTAAATTTATATAC+GGG | - | tig0023869:31300-31319 | None:intergenic | 15.0% |
| !! | CAAACTTGTAAATTTATATA+CGG | - | tig0023869:31301-31320 | None:intergenic | 15.0% |
| !!! | TTTGTAATTTGTTTTGATTA+AGG | + | tig0023869:32459-32478 | Msa1412060:intron | 15.0% |
| !!! | ATAATATTGACTTTTTAGTT+AGG | + | tig0023869:32703-32722 | Msa1412060:intron | 15.0% |
| !!! | TAATATTGACTTTTTAGTTA+GGG | + | tig0023869:32704-32723 | Msa1412060:intron | 15.0% |
| !!! | GAAATTATCAATTTAGAATA+TGG | + | tig0023869:32870-32889 | Msa1412060:intron | 15.0% |
| !!! | AATTATCAATTTAGAATATG+GGG | + | tig0023869:32872-32891 | Msa1412060:intron | 15.0% |
| !!! | TACATAAATAAATGGATTTA+TGG | + | tig0023869:32980-32999 | Msa1412060:intron | 15.0% |
| !! | ATATTTGTCAATATATTAAG+TGG | - | tig0023869:33840-33859 | None:intergenic | 15.0% |
| !! | AAAAAACTAACTTGATATTG+CGG | - | tig0023869:29309-29328 | None:intergenic | 20.0% |
| !!! | TCTTCTTTTCAATTTGTATT+TGG | + | tig0023869:29332-29351 | Msa1412060:intron | 20.0% |
| !! | TTCAATTTGTATTTGGAAAT+TGG | + | tig0023869:29339-29358 | Msa1412060:intron | 20.0% |
| !! | TCAATTTGTATTTGGAAATT+GGG | + | tig0023869:29340-29359 | Msa1412060:intron | 20.0% |
| !! | AATGTAGGTTATTTATCATA+GGG | + | tig0023869:30141-30160 | Msa1412060:intron | 20.0% |
| !!! | GATTGTGAAATTAAAGTTTT+TGG | + | tig0023869:30210-30229 | Msa1412060:intron | 20.0% |
| !!! | AAATTAAAGTTTTTGGTGTA+GGG | + | tig0023869:30217-30236 | Msa1412060:intron | 20.0% |
| !! | TCCTTAATTTAAAGAAGAAA+AGG | + | tig0023869:30404-30423 | Msa1412060:intron | 20.0% |
| !!! | TCCTTTTCTTCTTTAAATTA+AGG | - | tig0023869:30408-30427 | None:intergenic | 20.0% |
| !! | ACAAGTTAGATAACTATTTA+TGG | + | tig0023869:30741-30760 | Msa1412060:intron | 20.0% |
| !! | TAATCATCTGATTATACAAA+AGG | - | tig0023869:30782-30801 | None:intergenic | 20.0% |
| !! | TTGTATAATCAGATGATTAT+CGG | + | tig0023869:30783-30802 | Msa1412060:intron | 20.0% |
| !! | TAAAATGTAAATTATGAAGC+AGG | - | tig0023869:31033-31052 | None:intergenic | 20.0% |
| !! | CGTATATAAATTTACAAGTT+TGG | + | tig0023869:31299-31318 | Msa1412060:intron | 20.0% |
| !! | TTCATTTGTGATGATAAAAT+TGG | + | tig0023869:31752-31771 | Msa1412060:intron | 20.0% |
| !! | TAAAAATAAGTCAATCCAAA+CGG | - | tig0023869:32110-32129 | None:intergenic | 20.0% |
| !! | ATTATTTGCAAATATGTTTG+TGG | + | tig0023869:32423-32442 | Msa1412060:intron | 20.0% |
| !! | ACTAAAAAGTCAATATTATC+TGG | - | tig0023869:32702-32721 | None:intergenic | 20.0% |
| !! | TCAAATAATTAAGTGAAGTT+TGG | + | tig0023869:33239-33258 | Msa1412060:intron | 20.0% |
| ! | AATGTTTGATTGATCGAATT+GGG | - | tig0023869:29053-29072 | None:intergenic | 25.0% |
| ! | TGCAAGTGTAAAAATATGTT+TGG | + | tig0023869:29754-29773 | Msa1412060:intron | 25.0% |
| !!! | AGAATTGATTTTGACATGTT+TGG | - | tig0023869:29853-29872 | None:intergenic | 25.0% |
| ! | CAAGAATACAATTTCCATAT+AGG | - | tig0023869:29953-29972 | None:intergenic | 25.0% |
| ! | CAATGTAGGTTATTTATCAT+AGG | + | tig0023869:30140-30159 | Msa1412060:intron | 25.0% |
| ! | ATGTAGGTTATTTATCATAG+GGG | + | tig0023869:30142-30161 | Msa1412060:intron | 25.0% |
| !!! | GAAATTAAAGTTTTTGGTGT+AGG | + | tig0023869:30216-30235 | Msa1412060:intron | 25.0% |
| ! | AATAAAACTTAGGGAATGTT+TGG | - | tig0023869:30461-30480 | None:intergenic | 25.0% |
| !!! | TTTTATTTTTAGTTGTGGCT+GGG | + | tig0023869:30923-30942 | Msa1412060:intron | 25.0% |
| !!! | TTCTCAGATTTTTGTTTGAA+GGG | + | tig0023869:30970-30989 | Msa1412060:intron | 25.0% |
| ! | TCATATTTGAGCTTATATAC+AGG | - | tig0023869:31572-31591 | None:intergenic | 25.0% |
| ! | TACACACAATTGCATATAAA+TGG | + | tig0023869:32922-32941 | Msa1412060:intron | 25.0% |
| ! | ACACACAATTGCATATAAAT+GGG | + | tig0023869:32923-32942 | Msa1412060:intron | 25.0% |
| !! | ATGGGTTATAAATTATACGA+TGG | + | tig0023869:32941-32960 | Msa1412060:intron | 25.0% |
| ! | AATAACTGATCTCATCTATT+TGG | + | tig0023869:33321-33340 | Msa1412060:intron | 25.0% |
| ! | AAACAACAAAGGAATTAAGT+TGG | - | tig0023869:33576-33595 | None:intergenic | 25.0% |
| !! | ATACTCTTTCTTGACATTTT+TGG | - | tig0023869:33626-33645 | None:intergenic | 25.0% |
| ! | ATTCCAATGTAACAAATTGA+AGG | + | tig0023869:33739-33758 | Msa1412060:three_prime_UTR | 25.0% |
| ! | TCTTTAAATAGCACATTCTT+GGG | - | tig0023869:33785-33804 | None:intergenic | 25.0% |
| ! | ATCTTTAAATAGCACATTCT+TGG | - | tig0023869:33786-33805 | None:intergenic | 25.0% |
| ! | AAACCAATAATTCATCAGTA+CGG | - | tig0023869:33873-33892 | None:intergenic | 25.0% |
| ATGTTTGATTGATCGAATTG+GGG | - | tig0023869:29052-29071 | None:intergenic | 30.0% | |
| CAATGTTTGATTGATCGAAT+TGG | - | tig0023869:29054-29073 | None:intergenic | 30.0% | |
| GAAATTGGGAAAAGAGAATT+TGG | + | tig0023869:29354-29373 | Msa1412060:intron | 30.0% | |
| ! | ATCGATTCTAACTTAAAGCT+AGG | - | tig0023869:29797-29816 | None:intergenic | 30.0% |
| CATGTTTCATTGAAGTGATT+TGG | + | tig0023869:29891-29910 | Msa1412060:intron | 30.0% | |
| !! | CTAGGAAGGTTTTTCAATTT+TGG | + | tig0023869:30026-30045 | Msa1412060:intron | 30.0% |
| TCATGATATGTTCACATGTA+AGG | + | tig0023869:30071-30090 | Msa1412060:intron | 30.0% | |
| GAAACAAGATATTGCAATGT+AGG | + | tig0023869:30126-30145 | Msa1412060:intron | 30.0% | |
| ! | TATTTATCATAGGGGTCTTT+TGG | + | tig0023869:30150-30169 | Msa1412060:intron | 30.0% |
| AACTCTCAAACACATTCTTA+AGG | - | tig0023869:30244-30263 | None:intergenic | 30.0% | |
| ! | GGACTGGTAAATAAAACTTA+GGG | - | tig0023869:30470-30489 | None:intergenic | 30.0% |
| GAGATGAAACAAACATAACA+GGG | - | tig0023869:30537-30556 | None:intergenic | 30.0% | |
| AGAGATGAAACAAACATAAC+AGG | - | tig0023869:30538-30557 | None:intergenic | 30.0% | |
| GAGTTACATGAAAACAGTAA+TGG | - | tig0023869:30574-30593 | None:intergenic | 30.0% | |
| TTTCATGTAACTCTTACACT+TGG | + | tig0023869:30581-30600 | Msa1412060:intron | 30.0% | |
| TATGATATGCACGATTCAAT+TGG | + | tig0023869:30637-30656 | Msa1412060:intron | 30.0% | |
| !!! | CTTTTATTTTTAGTTGTGGC+TGG | + | tig0023869:30922-30941 | Msa1412060:intron | 30.0% |
| !! | CTTCTCAGATTTTTGTTTGA+AGG | + | tig0023869:30969-30988 | Msa1412060:intron | 30.0% |
| TTAACGATTTGTGTATCGTA+AGG | + | tig0023869:31002-31021 | Msa1412060:intron | 30.0% | |
| GGGCACTTGAAATTATTAAA+TGG | + | tig0023869:31140-31159 | Msa1412060:intron | 30.0% | |
| AATTCCACAATACTTTCTAG+GGG | - | tig0023869:31343-31362 | None:intergenic | 30.0% | |
| GAATTCCACAATACTTTCTA+GGG | - | tig0023869:31344-31363 | None:intergenic | 30.0% | |
| TTCAATAATACGATCCTGTT+TGG | + | tig0023869:31365-31384 | Msa1412060:intron | 30.0% | |
| ! | GTCGATTTAATAAGCTATCA+TGG | + | tig0023869:31457-31476 | Msa1412060:intron | 30.0% |
| TGAAATAAGTCAATCCAAAC+AGG | + | tig0023869:31589-31608 | Msa1412060:intron | 30.0% | |
| TAAGGATTCAAATAGTGTGT+TGG | + | tig0023869:31624-31643 | Msa1412060:intron | 30.0% | |
| ! | ATTTTGTTACCAGAAAGAAG+AGG | + | tig0023869:32050-32069 | Msa1412060:intron | 30.0% |
| ! | TTTTGTTACCAGAAAGAAGA+GGG | + | tig0023869:32051-32070 | Msa1412060:intron | 30.0% |
| TGAGAGTGGATATATACTTA+TGG | + | tig0023869:32083-32102 | Msa1412060:intron | 30.0% | |
| ATATATACTTATGGTCCGTT+TGG | + | tig0023869:32092-32111 | Msa1412060:intron | 30.0% | |
| TTCATATGAAATTAAGCGTC+TGG | - | tig0023869:32320-32339 | None:intergenic | 30.0% | |
| TCATGTCTAAATATCTGCTT+TGG | + | tig0023869:32653-32672 | Msa1412060:intron | 30.0% | |
| !!! | GACTTTTTAGTTAGGGATAT+AGG | + | tig0023869:32711-32730 | Msa1412060:intron | 30.0% |
| ACAATTCTACCATAGATGAT+TGG | + | tig0023869:33071-33090 | Msa1412060:intron | 30.0% | |
| !!! | TTACTCTTGCGTAGTTTTAT+TGG | - | tig0023869:33456-33475 | None:intergenic | 30.0% |
| !!! | TTTTTGGCTTCTTCTGAATA+TGG | - | tig0023869:33610-33629 | None:intergenic | 30.0% |
| TATTCTGCACAAGTGAAAAT+AGG | + | tig0023869:33643-33662 | Msa1412060:exon | 30.0% | |
| AGGCCAGAATATGTATAAAT+CGG | + | tig0023869:33663-33682 | Msa1412060:three_prime_UTR | 30.0% | |
| AACCCGATTTATACATATTC+TGG | - | tig0023869:33669-33688 | None:intergenic | 30.0% | |
| !! | GAACCTTCAATTTGTTACAT+TGG | - | tig0023869:33745-33764 | None:intergenic | 30.0% |
| TCTTGGGAAAGAAAATCTAA+AGG | - | tig0023869:33769-33788 | None:intergenic | 30.0% | |
| ! | ATACCGTACTGATGAATTAT+TGG | + | tig0023869:33867-33886 | Msa1412060:three_prime_UTR | 30.0% |
| ! | GTTTGGTTTAGGTTTGTTTG+GGG | - | tig0023869:29013-29032 | None:intergenic | 35.0% |
| ! | CGTTTGGTTTAGGTTTGTTT+GGG | - | tig0023869:29014-29033 | None:intergenic | 35.0% |
| ! | TCTAAAATCGCGTTTGGTTT+AGG | - | tig0023869:29024-29043 | None:intergenic | 35.0% |
| ! | GGAAAATCTAAAATCGCGTT+TGG | - | tig0023869:29030-29049 | None:intergenic | 35.0% |
| TGTTTGATTGATCGAATTGG+GGG | - | tig0023869:29051-29070 | None:intergenic | 35.0% | |
| GCATTGGAATATGTGAATTG+GGG | - | tig0023869:29144-29163 | None:intergenic | 35.0% | |
| ! | GGCATTGGAATATGTGAATT+GGG | - | tig0023869:29145-29164 | None:intergenic | 35.0% |
| ACTAACTTGATATTGCGGAA+CGG | - | tig0023869:29304-29323 | None:intergenic | 35.0% | |
| ATTGTGTTGTGTGATTGAAC+AGG | + | tig0023869:29391-29410 | Msa1412060:intron | 35.0% | |
| CATGATGATACAATACCTTC+AGG | - | tig0023869:29587-29606 | None:intergenic | 35.0% | |
| ATTGGAAATTTGGTTGTGAG+AGG | + | tig0023869:29667-29686 | Msa1412060:intron | 35.0% | |
| GTCAAAATCAATTATGCGTG+AGG | + | tig0023869:29823-29842 | Msa1412060:intron | 35.0% | |
| !! | ATTTTGGTCTGTTGAGTGTA+TGG | + | tig0023869:30042-30061 | Msa1412060:intron | 35.0% |
| ! | TGTGTTTGAGAGTTGAGTTT+TGG | + | tig0023869:30250-30269 | Msa1412060:intron | 35.0% |
| !!! | TTTGAGAGTTGAGTTTTGGA+GGG | + | tig0023869:30254-30273 | Msa1412060:intron | 35.0% |
| ! | AATGTTTGGATGGAGAGTTT+TGG | - | tig0023869:30447-30466 | None:intergenic | 35.0% |
| AAACTTAGGGAATGTTTGGA+TGG | - | tig0023869:30457-30476 | None:intergenic | 35.0% | |
| ! | GGGACTGGTAAATAAAACTT+AGG | - | tig0023869:30471-30490 | None:intergenic | 35.0% |
| !!! | TCCCCAGTCTTTTTTGTTTA+TGG | + | tig0023869:30487-30506 | Msa1412060:intron | 35.0% |
| CCCATAAACAAAAAAGACTG+GGG | - | tig0023869:30491-30510 | None:intergenic | 35.0% | |
| !!! | CCCCAGTCTTTTTTGTTTAT+GGG | + | tig0023869:30488-30507 | Msa1412060:intron | 35.0% |
| CCCCATAAACAAAAAAGACT+GGG | - | tig0023869:30492-30511 | None:intergenic | 35.0% | |
| !!! | CCCAGTCTTTTTTGTTTATG+GGG | + | tig0023869:30489-30508 | Msa1412060:intron | 35.0% |
| ! | GTTTATGGGGCTTATTGTTT+TGG | + | tig0023869:30502-30521 | Msa1412060:intron | 35.0% |
| CATGAAAACAGTAATGGTTG+AGG | - | tig0023869:30568-30587 | None:intergenic | 35.0% | |
| TAAGAACAAGAGAGGATCAA+CGG | - | tig0023869:30619-30638 | None:intergenic | 35.0% | |
| GCATATCATAAGAACAAGAG+AGG | - | tig0023869:30627-30646 | None:intergenic | 35.0% | |
| !!! | GGCGATGGATTCTATTTTTT+AGG | + | tig0023869:30658-30677 | Msa1412060:intron | 35.0% |
| ACTTACTCTTGCCATGTTAA+AGG | - | tig0023869:30879-30898 | None:intergenic | 35.0% | |
| TTTAACATGGCAAGAGTAAG+TGG | + | tig0023869:30878-30897 | Msa1412060:intron | 35.0% | |
| TTAACATGGCAAGAGTAAGT+GGG | + | tig0023869:30879-30898 | Msa1412060:intron | 35.0% | |
| ! | ATACACTATTTTGTCATCCC+AGG | + | tig0023869:31078-31097 | Msa1412060:intron | 35.0% |
| ! | TACACTATTTTGTCATCCCA+GGG | + | tig0023869:31079-31098 | Msa1412060:intron | 35.0% |
| TGTGAACAATGAGCAATGAA+TGG | - | tig0023869:31114-31133 | None:intergenic | 35.0% | |
| TTTGTTACGGGATCTCAAAT+CGG | + | tig0023869:31237-31256 | Msa1412060:intron | 35.0% | |
| CGAATTCCACAATACTTTCT+AGG | - | tig0023869:31345-31364 | None:intergenic | 35.0% | |
| AAACTGTTTGGTAGAGCTTA+TGG | - | tig0023869:31535-31554 | None:intergenic | 35.0% | |
| GAAACACTAGTGAAACTGTT+TGG | - | tig0023869:31547-31566 | None:intergenic | 35.0% | |
| ! | TTCAAATAGTGTGTTGGCAA+AGG | + | tig0023869:31630-31649 | Msa1412060:intron | 35.0% |
| ! | TCAAATAGTGTGTTGGCAAA+GGG | + | tig0023869:31631-31650 | Msa1412060:intron | 35.0% |
| ATCTGCATTTACATCAAGTC+TGG | + | tig0023869:31895-31914 | Msa1412060:intron | 35.0% | |
| CATAAAGTAACCCAGAATGA+AGG | - | tig0023869:31941-31960 | None:intergenic | 35.0% | |
| TATTGTTCATACGCTTGTCA+AGG | - | tig0023869:32236-32255 | None:intergenic | 35.0% | |
| TATGAAATTAAGCGTCTGGT+TGG | - | tig0023869:32316-32335 | None:intergenic | 35.0% | |
| AGGTATCTTTGATCTTGTCT+AGG | + | tig0023869:32479-32498 | Msa1412060:intron | 35.0% | |
| TAAGCGAACTGGAAAAACAA+AGG | + | tig0023869:32512-32531 | Msa1412060:CDS | 35.0% | |
| AAGCGAACTGGAAAAACAAA+GGG | + | tig0023869:32513-32532 | Msa1412060:CDS | 35.0% | |
| GCTGCTCTTAAAGAAATGAA+TGG | + | tig0023869:32576-32595 | Msa1412060:CDS | 35.0% | |
| TAGGTTTGCCAAAATCAACA+AGG | + | tig0023869:32730-32749 | Msa1412060:intron | 35.0% | |
| !!! | TCAAACCTTGCTGTTGATTT+TGG | - | tig0023869:32852-32871 | None:intergenic | 35.0% |
| ! | TCAATGACGGAATTCAACAA+TGG | - | tig0023869:33017-33036 | None:intergenic | 35.0% |
| ATTGTTGAATTCCGTCATTG+AGG | + | tig0023869:33016-33035 | Msa1412060:intron | 35.0% | |
| GAGTGATATTATCAGCAAGA+AGG | + | tig0023869:33118-33137 | Msa1412060:intron | 35.0% | |
| GTAACATGAGTTCCTATCAT+AGG | + | tig0023869:33140-33159 | Msa1412060:intron | 35.0% | |
| ACTGATCTCATCTATTTGGA+AGG | + | tig0023869:33325-33344 | Msa1412060:intron | 35.0% | |
| !! | ATCTATTTGGAAGGTGCTTT+GGG | + | tig0023869:33334-33353 | Msa1412060:intron | 35.0% |
| AAACCAAGATATCGAAGTCA+GGG | - | tig0023869:33410-33429 | None:intergenic | 35.0% | |
| TAAAACTACGCAAGAGTAAG+TGG | + | tig0023869:33457-33476 | Msa1412060:CDS | 35.0% | |
| GAGAACTGATTATGATGCAT+TGG | + | tig0023869:33485-33504 | Msa1412060:CDS | 35.0% | |
| TTCTGCAATGCAAACAACAA+AGG | - | tig0023869:33587-33606 | None:intergenic | 35.0% | |
| GGCCAGAATATGTATAAATC+GGG | + | tig0023869:33664-33683 | Msa1412060:three_prime_UTR | 35.0% | |
| TCAATATATTAAGTGGCCTG+AGG | - | tig0023869:33833-33852 | None:intergenic | 35.0% | |
| ! | AAAGGGTATAACGTGACATA+AGG | - | tig0023869:33907-33926 | None:intergenic | 35.0% |
| ! | GCGTTTGGTTTAGGTTTGTT+TGG | - | tig0023869:29015-29034 | None:intergenic | 40.0% |
| !! | GGGCATTGGAATATGTGAAT+TGG | - | tig0023869:29146-29165 | None:intergenic | 40.0% |
| TTGTTGAAGGTGAAAGGGAA+CGG | - | tig0023869:29178-29197 | None:intergenic | 40.0% | |
| AGATGCACAGATAATTACGC+CGG | + | tig0023869:29433-29452 | Msa1412060:CDS | 40.0% | |
| ACAATTTCCATATAGGCTCG+TGG | - | tig0023869:29946-29965 | None:intergenic | 40.0% | |
| TAACATACGAACGTAGTGAC+TGG | + | tig0023869:29987-30006 | Msa1412060:intron | 40.0% | |
| !! | GTTTGAGAGTTGAGTTTTGG+AGG | + | tig0023869:30253-30272 | Msa1412060:intron | 40.0% |
| !!! | TTGAGAGTTGAGTTTTGGAG+GGG | + | tig0023869:30255-30274 | Msa1412060:intron | 40.0% |
| !! | TTTGGATGGAGAGTTTTGGT+GGG | - | tig0023869:30443-30462 | None:intergenic | 40.0% |
| AAACAAAAAAGACTGGGGAC+TGG | - | tig0023869:30486-30505 | None:intergenic | 40.0% | |
| GCCCCATAAACAAAAAAGAC+TGG | - | tig0023869:30493-30512 | None:intergenic | 40.0% | |
| !!! | GGGCTTATTGTTTTGGAAGT+TGG | + | tig0023869:30509-30528 | Msa1412060:intron | 40.0% |
| CTCTTGCCATGTTAAAGGAA+GGG | - | tig0023869:30874-30893 | None:intergenic | 40.0% | |
| ACTCTTGCCATGTTAAAGGA+AGG | - | tig0023869:30875-30894 | None:intergenic | 40.0% | |
| CGATTTGTGTATCGTAAGGT+AGG | + | tig0023869:31006-31025 | Msa1412060:intron | 40.0% | |
| TGAATGGTGAAAGAAACCCT+GGG | - | tig0023869:31098-31117 | None:intergenic | 40.0% | |
| ATGAATGGTGAAAGAAACCC+TGG | - | tig0023869:31099-31118 | None:intergenic | 40.0% | |
| TGCTCATTGTTCACAAAGCA+CGG | + | tig0023869:31119-31138 | Msa1412060:intron | 40.0% | |
| GGATCTCAAATCGGTTGAAT+TGG | + | tig0023869:31246-31265 | Msa1412060:intron | 40.0% | |
| AAATCGGTTGAATTGGAGTC+AGG | + | tig0023869:31253-31272 | Msa1412060:intron | 40.0% | |
| !! | CTTTCCCCTAGAAAGTATTG+TGG | + | tig0023869:31336-31355 | Msa1412060:intron | 40.0% |
| ! | GTTGAGGTGTTTATCCAAAC+AGG | - | tig0023869:31382-31401 | None:intergenic | 40.0% |
| ACGCTATAAGTGCTTAGTTG+AGG | - | tig0023869:31398-31417 | None:intergenic | 40.0% | |
| AAGCTATCATGGAGAGCTTA+TGG | + | tig0023869:31468-31487 | Msa1412060:intron | 40.0% | |
| GAGCTTATGGAAACAGCATA+TGG | - | tig0023869:31522-31541 | None:intergenic | 40.0% | |
| TCAATCCAAACAGGCTCATA+TGG | + | tig0023869:31598-31617 | Msa1412060:intron | 40.0% | |
| TATTGCCATATGAGCCTGTT+TGG | - | tig0023869:31606-31625 | None:intergenic | 40.0% | |
| AACAGGCTCATATGGCAATA+AGG | + | tig0023869:31606-31625 | Msa1412060:intron | 40.0% | |
| ! | CAAATAGTGTGTTGGCAAAG+GGG | + | tig0023869:31632-31651 | Msa1412060:intron | 40.0% |
| AAATATTCCCACCCATAACG+AGG | + | tig0023869:31673-31692 | Msa1412060:intron | 40.0% | |
| AATATTCCCACCCATAACGA+GGG | + | tig0023869:31674-31693 | Msa1412060:intron | 40.0% | |
| TCTCACTTATCCCTCGTTAT+GGG | - | tig0023869:31687-31706 | None:intergenic | 40.0% | |
| !! | TTTGAAAGCACCCTTATCTC+TGG | - | tig0023869:31731-31750 | None:intergenic | 40.0% |
| GTTGACTGATTATTGAGCCA+AGG | + | tig0023869:31835-31854 | Msa1412060:intron | 40.0% | |
| CACTAGAGAAGGAAATACCT+TGG | - | tig0023869:31855-31874 | None:intergenic | 40.0% | |
| ! | CAAGGTATTTCCTTCTCTAG+TGG | + | tig0023869:31853-31872 | Msa1412060:intron | 40.0% |
| TTCACACATTCCACTAGAGA+AGG | - | tig0023869:31866-31885 | None:intergenic | 40.0% | |
| CTAATCAGAGCCTTCATTCT+GGG | + | tig0023869:31928-31947 | Msa1412060:intron | 40.0% | |
| CTAGTTAACACTTAGCAGAC+AGG | - | tig0023869:32393-32412 | None:intergenic | 40.0% | |
| GTTGTTAGAGATAAGCGAAC+TGG | + | tig0023869:32501-32520 | Msa1412060:CDS | 40.0% | |
| ACTGGAAAAACAAAGGGCTA+TGG | + | tig0023869:32519-32538 | Msa1412060:CDS | 40.0% | |
| ! | TTTCTTTAAGAGCAGCAGCA+AGG | - | tig0023869:32572-32591 | None:intergenic | 40.0% |
| !!! | AGCAGCTTCCTTGTTGATTT+TGG | - | tig0023869:32741-32760 | None:intergenic | 40.0% |
| GTTTGCCAAAATCAACAGCA+AGG | + | tig0023869:32844-32863 | Msa1412060:intron | 40.0% | |
| ACGGAATTCAACAATGGCAT+TGG | - | tig0023869:33011-33030 | None:intergenic | 40.0% | |
| GCTTCTTATTGCCTCAATGA+CGG | - | tig0023869:33030-33049 | None:intergenic | 40.0% | |
| CATTGAGGCAATAAGAAGCA+AGG | + | tig0023869:33031-33050 | Msa1412060:intron | 40.0% | |
| CATGTCAGCTTTCCTATGAT+AGG | - | tig0023869:33155-33174 | None:intergenic | 40.0% | |
| AGCTGACATGTTCTTGTTCT+AGG | + | tig0023869:33165-33184 | Msa1412060:intron | 40.0% | |
| ! | TGACATGTTCTTGTTCTAGG+TGG | + | tig0023869:33168-33187 | Msa1412060:intron | 40.0% |
| ! | TGTTCTTGTTCTAGGTGGTT+TGG | + | tig0023869:33173-33192 | Msa1412060:intron | 40.0% |
| TTTGGACGTGTGGAAAAGAT+AGG | + | tig0023869:33191-33210 | Msa1412060:intron | 40.0% | |
| CATGACGACATAATGTCTCA+TGG | - | tig0023869:33294-33313 | None:intergenic | 40.0% | |
| !! | CATCTATTTGGAAGGTGCTT+TGG | + | tig0023869:33333-33352 | Msa1412060:intron | 40.0% |
| GAAACCAAGATATCGAAGTC+AGG | - | tig0023869:33411-33430 | None:intergenic | 40.0% | |
| GACTTCGATATCTTGGTTTC+AGG | + | tig0023869:33411-33430 | Msa1412060:intron | 40.0% | |
| ! | TTGGTTTCAGGTAAGTACGT+CGG | + | tig0023869:33423-33442 | Msa1412060:intron | 40.0% |
| TGATGCATTGGAGAAACAGA+AGG | + | tig0023869:33497-33516 | Msa1412060:CDS | 40.0% | |
| AGATGTGTAAACCTCTCGTT+AGG | + | tig0023869:33802-33821 | Msa1412060:three_prime_UTR | 40.0% | |
| TGGAACGAATCGTGAATCGA+TGG | - | tig0023869:29082-29101 | None:intergenic | 45.0% | |
| TGAGATGATGAGGATGAAGG+TGG | - | tig0023869:29120-29139 | None:intergenic | 45.0% | |
| GGTTGAGATGATGAGGATGA+AGG | - | tig0023869:29123-29142 | None:intergenic | 45.0% | |
| GAATTGGGGTTGAGATGATG+AGG | - | tig0023869:29130-29149 | None:intergenic | 45.0% | |
| TGTTGAAGGTGAAAGGGAAC+GGG | - | tig0023869:29177-29196 | None:intergenic | 45.0% | |
| TTCACATTCTCAAGAGCCTC+CGG | - | tig0023869:29455-29474 | None:intergenic | 45.0% | |
| CCAAGAAGAAAGCTGTTCCT+CGG | + | tig0023869:29516-29535 | Msa1412060:CDS | 45.0% | |
| AGGATCCTATTCTTGCAGAG+TGG | + | tig0023869:29561-29580 | Msa1412060:CDS | 45.0% | |
| TGTGAGAGGTAGTGTGTGTT+TGG | + | tig0023869:29681-29700 | Msa1412060:intron | 45.0% | |
| TTCCATATAGGCTCGTGGAA+GGG | - | tig0023869:29941-29960 | None:intergenic | 45.0% | |
| TTTCCATATAGGCTCGTGGA+AGG | - | tig0023869:29942-29961 | None:intergenic | 45.0% | |
| ! | TAGTGACTGGTTGCGATACT+TGG | + | tig0023869:30000-30019 | Msa1412060:intron | 45.0% |
| ! | AGTGACTGGTTGCGATACTT+GGG | + | tig0023869:30001-30020 | Msa1412060:intron | 45.0% |
| !! | GTTTGGATGGAGAGTTTTGG+TGG | - | tig0023869:30444-30463 | None:intergenic | 45.0% |
| ATGCACGATTCAATTGGCGA+TGG | + | tig0023869:30643-30662 | Msa1412060:intron | 45.0% | |
| !! | GATGATTATCGGCTCTTCTG+CGG | + | tig0023869:30794-30813 | Msa1412060:intron | 45.0% |
| GCGATTCCCTTCCTTTAACA+TGG | + | tig0023869:30865-30884 | Msa1412060:CDS | 45.0% | |
| GCTCATTGTTCACAAAGCAC+GGG | + | tig0023869:31120-31139 | Msa1412060:intron | 45.0% | |
| !!! | TCAGGTCGAGTTTCTGGTTT+TGG | + | tig0023869:31271-31290 | Msa1412060:intron | 45.0% |
| !!! | GGCAAAGGGGTTTTTAAGTG+TGG | + | tig0023869:31645-31664 | Msa1412060:intron | 45.0% |
| ACTTATCCCTCGTTATGGGT+GGG | - | tig0023869:31683-31702 | None:intergenic | 45.0% | |
| GTCTCACTTATCCCTCGTTA+TGG | - | tig0023869:31688-31707 | None:intergenic | 45.0% | |
| TTGAGTGTCCACCAGAGATA+AGG | + | tig0023869:31717-31736 | Msa1412060:intron | 45.0% | |
| TGAGTGTCCACCAGAGATAA+GGG | + | tig0023869:31718-31737 | Msa1412060:intron | 45.0% | |
| GCTAATCAGAGCCTTCATTC+TGG | + | tig0023869:31927-31946 | Msa1412060:intron | 45.0% | |
| ATAACGCACCCTCTTCTTTC+TGG | - | tig0023869:32062-32081 | None:intergenic | 45.0% | |
| CTCGTGTGACCAATCATCTA+TGG | - | tig0023869:33083-33102 | None:intergenic | 45.0% | |
| TTGGTCACACGAGACAAGAT+AGG | + | tig0023869:33090-33109 | Msa1412060:intron | 45.0% | |
| !! | GCTTTGGGTGTTGTTGTAGT+AGG | + | tig0023869:33349-33368 | Msa1412060:intron | 45.0% |
| GTACCCTGACTTCGATATCT+TGG | + | tig0023869:33404-33423 | Msa1412060:intron | 45.0% | |
| CAGGTAAGTACGTCGGAAAT+CGG | + | tig0023869:33430-33449 | Msa1412060:intron | 45.0% | |
| AACTACGCAAGAGTAAGTGG+AGG | + | tig0023869:33460-33479 | Msa1412060:CDS | 45.0% | |
| ACTACGCAAGAGTAAGTGGA+GGG | + | tig0023869:33461-33480 | Msa1412060:CDS | 45.0% | |
| !!! | TAATTTATTTTAATGTATAT+TGG | + | tig0023869:29649-29668 | Msa1412060:intron | 5.0% |
| !! | GGTGGTGTCGTCATTGCAAT+TGG | - | tig0023869:29102-29121 | None:intergenic | 50.0% |
| AAAGGGAACGGGGAAGTAAG+GGG | - | tig0023869:29166-29185 | None:intergenic | 50.0% | |
| GAAAGGGAACGGGGAAGTAA+GGG | - | tig0023869:29167-29186 | None:intergenic | 50.0% | |
| TGAAAGGGAACGGGGAAGTA+AGG | - | tig0023869:29168-29187 | None:intergenic | 50.0% | |
| GTTGAAGGTGAAAGGGAACG+GGG | - | tig0023869:29176-29195 | None:intergenic | 50.0% | |
| ! | GCGGGTTGTTGAAGGTGAAA+GGG | - | tig0023869:29183-29202 | None:intergenic | 50.0% |
| ! | TGCGGGTTGTTGAAGGTGAA+AGG | - | tig0023869:29184-29203 | None:intergenic | 50.0% |
| TGCACAGATAATTACGCCGG+AGG | + | tig0023869:29436-29455 | Msa1412060:CDS | 50.0% | |
| GGAGGCTCTTGAGAATGTGA+AGG | + | tig0023869:29454-29473 | Msa1412060:CDS | 50.0% | |
| GGCTCTTGAGAATGTGAAGG+CGG | + | tig0023869:29457-29476 | Msa1412060:CDS | 50.0% | |
| CCGAGGAACAGCTTTCTTCT+TGG | - | tig0023869:29519-29538 | None:intergenic | 50.0% | |
| GAAAGCTGCTGGTCAAGCTT+GGG | + | tig0023869:29538-29557 | Msa1412060:CDS | 50.0% | |
| TCAGGCCACTCTGCAAGAAT+AGG | - | tig0023869:29569-29588 | None:intergenic | 50.0% | |
| ATTCTTGCAGAGTGGCCTGA+AGG | + | tig0023869:29569-29588 | Msa1412060:CDS | 50.0% | |
| TTCCCTTCCACGAGCCTATA+TGG | + | tig0023869:29936-29955 | Msa1412060:intron | 50.0% | |
| !! | GAGTTTTGGTGGGTAGAGGA+GGG | - | tig0023869:30433-30452 | None:intergenic | 50.0% |
| !! | AGAGTTTTGGTGGGTAGAGG+AGG | - | tig0023869:30434-30453 | None:intergenic | 50.0% |
| !! | TGGAGAGTTTTGGTGGGTAG+AGG | - | tig0023869:30437-30456 | None:intergenic | 50.0% |
| TTGGAGTCAGGTCGAGTTTC+TGG | + | tig0023869:31265-31284 | Msa1412060:intron | 50.0% | |
| CACTTATCCCTCGTTATGGG+TGG | - | tig0023869:31684-31703 | None:intergenic | 50.0% | |
| !! | GAAAGCACCCTTATCTCTGG+TGG | - | tig0023869:31728-31747 | None:intergenic | 50.0% |
| ! | GAGGGTGCGTTATTTGAGAG+TGG | + | tig0023869:32069-32088 | Msa1412060:intron | 50.0% |
| ! | TTCTAGGTGGTTTGGACGTG+TGG | + | tig0023869:33181-33200 | Msa1412060:intron | 50.0% |
| CTGAGGCATAACCTAACGAG+AGG | - | tig0023869:33816-33835 | None:intergenic | 50.0% | |
| CTCTCGTTAGGTTATGCCTC+AGG | + | tig0023869:33814-33833 | Msa1412060:three_prime_UTR | 50.0% | |
| ! | AACGGGGAAGTAAGGGGCAT+TGG | - | tig0023869:29160-29179 | None:intergenic | 55.0% |
| ! | AGGTGGTTGCGGGTTGTTGA+AGG | - | tig0023869:29191-29210 | None:intergenic | 55.0% |
| CTCAACGTCGCTACTCGCAA+TGG | - | tig0023869:29483-29502 | None:intergenic | 55.0% | |
| GGAAAGCTGCTGGTCAAGCT+TGG | + | tig0023869:29537-29556 | Msa1412060:CDS | 55.0% | |
| GGTTGCGATACTTGGGAGCT+AGG | + | tig0023869:30008-30027 | Msa1412060:intron | 55.0% | |
| GCGATACTTGGGAGCTAGGA+AGG | + | tig0023869:30012-30031 | Msa1412060:intron | 55.0% | |
| !! | TTGGAGGGGAGCACTTTAGC+AGG | + | tig0023869:30269-30288 | Msa1412060:intron | 55.0% |
| GGCTCTTCTGCGGTGATCTT+GGG | + | tig0023869:30804-30823 | Msa1412060:CDS | 55.0% | |
| GCGTAGTGAGAGGTGGTTGC+GGG | - | tig0023869:29201-29220 | None:intergenic | 60.0% | |
| GGCGTAGTGAGAGGTGGTTG+CGG | - | tig0023869:29202-29221 | None:intergenic | 60.0% | |
| CTTCCTCCGCCGCCAATTGT+CGG | + | tig0023869:29252-29271 | Msa1412060:CDS | 60.0% | |
| TAAGCAGCAGGCGGTGGAAC+GGG | - | tig0023869:29279-29298 | None:intergenic | 60.0% | |
| GTAAGCAGCAGGCGGTGGAA+CGG | - | tig0023869:29280-29299 | None:intergenic | 60.0% | |
| GGAACGGAGTAAGCAGCAGG+CGG | - | tig0023869:29288-29307 | None:intergenic | 60.0% | |
| TGCGGAACGGAGTAAGCAGC+AGG | - | tig0023869:29291-29310 | None:intergenic | 60.0% | |
| GCTGTTCCTCGGAAAGCTGC+TGG | + | tig0023869:29527-29546 | Msa1412060:CDS | 60.0% | |
| GCTTGACCAGCAGCTTTCCG+AGG | - | tig0023869:29536-29555 | None:intergenic | 60.0% | |
| AGCTGCTGGTCAAGCTTGGG+AGG | + | tig0023869:29541-29560 | Msa1412060:CDS | 60.0% | |
| CGGCTCTTCTGCGGTGATCT+TGG | + | tig0023869:30803-30822 | Msa1412060:CDS | 60.0% | |
| AGCAGCAAGGTCAGCAGGGT+TGG | - | tig0023869:32559-32578 | None:intergenic | 60.0% | |
| GAGCAGCAGCAAGGTCAGCA+GGG | - | tig0023869:32563-32582 | None:intergenic | 60.0% | |
| AGAGCAGCAGCAAGGTCAGC+AGG | - | tig0023869:32564-32583 | None:intergenic | 60.0% | |
| GTAGGGTGCGGCGTAGTGAG+AGG | - | tig0023869:29211-29230 | None:intergenic | 65.0% | |
| GGAACGGGGCCGACAATTGG+CGG | - | tig0023869:29264-29283 | None:intergenic | 65.0% | |
| GGTGGAACGGGGCCGACAAT+TGG | - | tig0023869:29267-29286 | None:intergenic | 65.0% | |
| AAGCAGCAGGCGGTGGAACG+GGG | - | tig0023869:29278-29297 | None:intergenic | 65.0% | |
| ACGGAGTAAGCAGCAGGCGG+TGG | - | tig0023869:29285-29304 | None:intergenic | 65.0% | |
| GGGTGCGGCGTAGTGAGAGG+TGG | - | tig0023869:29208-29227 | None:intergenic | 70.0% | |
| TGGCGGCGGAGGAAGCTGCA+CGG | - | tig0023869:29247-29266 | None:intergenic | 70.0% | |
| ACGGGGCCGACAATTGGCGG+CGG | - | tig0023869:29261-29280 | None:intergenic | 70.0% | |
| GGGGGTGGCGACGTAGGGTG+CGG | - | tig0023869:29223-29242 | None:intergenic | 75.0% | |
| ACGGCGGGGGTGGCGACGTA+GGG | - | tig0023869:29228-29247 | None:intergenic | 75.0% | |
| AGGAAGCTGCACGGCGGGGG+TGG | - | tig0023869:29238-29257 | None:intergenic | 75.0% | |
| CGGAGGAAGCTGCACGGCGG+GGG | - | tig0023869:29241-29260 | None:intergenic | 75.0% | |
| GCGGAGGAAGCTGCACGGCG+GGG | - | tig0023869:29242-29261 | None:intergenic | 75.0% | |
| GGCGGAGGAAGCTGCACGGC+GGG | - | tig0023869:29243-29262 | None:intergenic | 75.0% | |
| CGGCGGAGGAAGCTGCACGG+CGG | - | tig0023869:29244-29263 | None:intergenic | 75.0% | |
| GGGCCGACAATTGGCGGCGG+AGG | - | tig0023869:29258-29277 | None:intergenic | 75.0% | |
| ! | CACGGCGGGGGTGGCGACGT+AGG | - | tig0023869:29229-29248 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023869 | gene | 28948 | 33939 | 28948 | ID=Msa1412060;Name=Msa1412060 |
| tig0023869 | mRNA | 28948 | 33939 | 28948 | ID=Msa1412060-mRNA-1;Parent=Msa1412060;Name=Msa1412060-mRNA-1;_AED=0.16;_eAED=0.16;_QI=160|1|1|1|1|1|6|281|240 |
| tig0023869 | exon | 28948 | 29317 | 28948 | ID=Msa1412060-mRNA-1:exon:20432;Parent=Msa1412060-mRNA-1 |
| tig0023869 | exon | 29413 | 29590 | 29413 | ID=Msa1412060-mRNA-1:exon:20433;Parent=Msa1412060-mRNA-1 |
| tig0023869 | exon | 30795 | 30892 | 30795 | ID=Msa1412060-mRNA-1:exon:20434;Parent=Msa1412060-mRNA-1 |
| tig0023869 | exon | 32501 | 32597 | 32501 | ID=Msa1412060-mRNA-1:exon:20435;Parent=Msa1412060-mRNA-1 |
| tig0023869 | exon | 33433 | 33518 | 33433 | ID=Msa1412060-mRNA-1:exon:20436;Parent=Msa1412060-mRNA-1 |
| tig0023869 | exon | 33605 | 33939 | 33605 | ID=Msa1412060-mRNA-1:exon:20437;Parent=Msa1412060-mRNA-1 |
| tig0023869 | five_prime_UTR | 28948 | 29107 | 28948 | ID=Msa1412060-mRNA-1:five_prime_utr;Parent=Msa1412060-mRNA-1 |
| tig0023869 | CDS | 29108 | 29317 | 29108 | ID=Msa1412060-mRNA-1:cds;Parent=Msa1412060-mRNA-1 |
| tig0023869 | CDS | 29413 | 29590 | 29413 | ID=Msa1412060-mRNA-1:cds;Parent=Msa1412060-mRNA-1 |
| tig0023869 | CDS | 30795 | 30892 | 30795 | ID=Msa1412060-mRNA-1:cds;Parent=Msa1412060-mRNA-1 |
| tig0023869 | CDS | 32501 | 32597 | 32501 | ID=Msa1412060-mRNA-1:cds;Parent=Msa1412060-mRNA-1 |
| tig0023869 | CDS | 33433 | 33518 | 33433 | ID=Msa1412060-mRNA-1:cds;Parent=Msa1412060-mRNA-1 |
| tig0023869 | CDS | 33605 | 33658 | 33605 | ID=Msa1412060-mRNA-1:cds;Parent=Msa1412060-mRNA-1 |
| tig0023869 | three_prime_UTR | 33659 | 33939 | 33659 | ID=Msa1412060-mRNA-1:three_prime_utr;Parent=Msa1412060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
