AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0079270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0079270 MtrunA17_Chr1g0190211 100.000 81 0 0 1 81 160 240 4.94e-55 169
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0079270 AT3G04500.1 79.012 81 17 0 1 81 165 245 2.63e-41 135

Find 105 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTACTCTTGCCATGTTAA+AGG 0.192434 1_2:+57053418 None:intergenic
ATACCGTACTGATGAATTAT+TGG 0.195169 1_2:-57050426 Msa0079270:three_prime_UTR
CCGAGGAACAGCTTTCTTCT+TGG 0.222688 1_2:+57054764 None:intergenic
CGGCTCTTCTGCGGTGATCT+TGG 0.238216 1_2:-57053491 Msa0079270:five_prime_UTR
TCTAAAATCGCGTTTGGTTT+AGG 0.252268 1_2:+57055259 None:intergenic
AACCCGATTTATACATATTC+TGG 0.256077 1_2:+57050627 None:intergenic
ATCTTTAAATAGCACATTCT+TGG 0.265302 1_2:+57050510 None:intergenic
TAAGCAGCAGGCGGTGGAAC+GGG 0.268956 1_2:+57055005 None:intergenic
CGTTTGGTTTAGGTTTGTTT+GGG 0.272698 1_2:+57055269 None:intergenic
TTGTATAATCAGATGATTAT+CGG 0.298287 1_2:-57053511 Msa0079270:intron
CGGCGTAGTGAGAGGTGGTT+GGG 0.317346 1_2:+57055081 None:intergenic
GCGTTTGGTTTAGGTTTGTT+TGG 0.326023 1_2:+57055268 None:intergenic
GGCATTGGAATATGTGAATT+GGG 0.328527 1_2:+57055138 None:intergenic
CAATGTTTGATTGATCGAAT+TGG 0.330230 1_2:+57055229 None:intergenic
GGCTCTTCTGCGGTGATCTT+GGG 0.342878 1_2:-57053490 Msa0079270:five_prime_UTR
TATTCTGCACAAGTGAAAAT+AGG 0.344778 1_2:-57050650 Msa0079270:exon
AGGCCAGAATATGTATAAAT+CGG 0.347367 1_2:-57050630 Msa0079270:three_prime_UTR
CGGAGGAAGCTGCACGGCGG+GGG 0.354638 1_2:+57055043 None:intergenic
CTTCCTCCGCCGCCAATTGT+CGG 0.356289 1_2:-57055029 Msa0079270:five_prime_UTR
AATGTTTGATTGATCGAATT+GGG 0.378975 1_2:+57055230 None:intergenic
TGTTGAAGGTGAAAGGGAAC+GGG 0.379503 1_2:+57055106 None:intergenic
GGCGGAGGAAGCTGCACGGC+GGG 0.390499 1_2:+57055041 None:intergenic
AGCAGCAAGGTCAGCAGGGT+TGG 0.390729 1_2:+57051736 None:intergenic
GAGGTGGTTGGGGTTGTTGA+AGG 0.393722 1_2:+57055092 None:intergenic
GGAAAATCTAAAATCGCGTT+TGG 0.394601 1_2:+57055253 None:intergenic
CAGGTAAGTACGTCGGAAAT+CGG 0.399897 1_2:-57050863 Msa0079270:CDS
GGGCATTGGAATATGTGAAT+TGG 0.406105 1_2:+57055137 None:intergenic
TCTTTAAATAGCACATTCTT+GGG 0.409087 1_2:+57050511 None:intergenic
GGTGGAACGGGGCCGACAAT+TGG 0.409141 1_2:+57055017 None:intergenic
TGAAAGGGAACGGGGAAGTA+AGG 0.412150 1_2:+57055115 None:intergenic
AGAGCAGCAGCAAGGTCAGC+AGG 0.413814 1_2:+57051731 None:intergenic
GCGGCGTAGTGAGAGGTGGT+TGG 0.429825 1_2:+57055080 None:intergenic
GGGCCGACAATTGGCGGCGG+AGG 0.430346 1_2:+57055026 None:intergenic
GCGGAGGAAGCTGCACGGCG+GGG 0.443060 1_2:+57055042 None:intergenic
CGGCGGAGGAAGCTGCACGG+CGG 0.453429 1_2:+57055040 None:intergenic
GGAACGGGGCCGACAATTGG+CGG 0.457314 1_2:+57055020 None:intergenic
ATTCCAATGTAACAAATTGA+AGG 0.458975 1_2:-57050554 Msa0079270:three_prime_UTR
GAAAGCTGCTGGTCAAGCTT+GGG 0.460458 1_2:-57054742 Msa0079270:five_prime_UTR
AACGGGGAAGTAAGGGGCAT+TGG 0.463371 1_2:+57055123 None:intergenic
GGAAAGCTGCTGGTCAAGCT+TGG 0.464391 1_2:-57054743 Msa0079270:five_prime_UTR
ATATTTGTCAATATATTAAG+TGG 0.464632 1_2:+57050456 None:intergenic
TCAGGCCACTCTGCAAGAAT+AGG 0.467965 1_2:+57054714 None:intergenic
TTGTTGAAGGTGAAAGGGAA+CGG 0.470279 1_2:+57055105 None:intergenic
TTGGGGTTGTTGAAGGTGAA+AGG 0.470577 1_2:+57055099 None:intergenic
GGTGGTGTCGTCATTGCAAT+TGG 0.472771 1_2:+57055181 None:intergenic
GTTGTTAGAGATAAGCGAAC+TGG 0.476084 1_2:-57051791 Msa0079270:CDS
AGATGTGTAAACCTCTCGTT+AGG 0.479688 1_2:-57050491 Msa0079270:three_prime_UTR
GCTGTTCCTCGGAAAGCTGC+TGG 0.484908 1_2:-57054753 Msa0079270:five_prime_UTR
ACGGAGTAAGCAGCAGGCGG+TGG 0.487179 1_2:+57054999 None:intergenic
AAAGGGAACGGGGAAGTAAG+GGG 0.493709 1_2:+57055117 None:intergenic
GGCCAGAATATGTATAAATC+GGG 0.496131 1_2:-57050629 Msa0079270:three_prime_UTR
GTAAGCAGCAGGCGGTGGAA+CGG 0.496822 1_2:+57055004 None:intergenic
GAGAACTGATTATGATGCAT+TGG 0.497577 1_2:-57050808 Msa0079270:CDS
AAAGGGTATAACGTGACATA+AGG 0.500921 1_2:+57050389 None:intergenic
GAACCTTCAATTTGTTACAT+TGG 0.502282 1_2:+57050551 None:intergenic
TAAAACTACGCAAGAGTAAG+TGG 0.505433 1_2:-57050836 Msa0079270:CDS
AACTTTGGAACAGCATTCAA+AGG 0.506140 1_2:+57050371 None:intergenic
CTCTCGTTAGGTTATGCCTC+AGG 0.513013 1_2:-57050479 Msa0079270:three_prime_UTR
GAAAGGGAACGGGGAAGTAA+GGG 0.516807 1_2:+57055116 None:intergenic
TGGGGTTGTTGAAGGTGAAA+GGG 0.516986 1_2:+57055100 None:intergenic
ACTCTTGCCATGTTAAAGGA+AGG 0.519304 1_2:+57053422 None:intergenic
TGCGGAACGGAGTAAGCAGC+AGG 0.541336 1_2:+57054993 None:intergenic
ACTTTGGAACAGCATTCAAA+GGG 0.543033 1_2:+57050372 None:intergenic
AGCTGCTGGTCAAGCTTGGG+AGG 0.546251 1_2:-57054739 Msa0079270:five_prime_UTR
CTCTTGCCATGTTAAAGGAA+GGG 0.550026 1_2:+57053423 None:intergenic
TTCACATTCTCAAGAGCCTC+CGG 0.552039 1_2:+57054828 None:intergenic
GCGATTCCCTTCCTTTAACA+TGG 0.564587 1_2:-57053429 Msa0079270:exon
AAGCAGCAGGCGGTGGAACG+GGG 0.570100 1_2:+57055006 None:intergenic
CCAAGAAGAAAGCTGTTCCT+CGG 0.572765 1_2:-57054764 Msa0079270:five_prime_UTR
TCTTGGGAAAGAAAATCTAA+AGG 0.578652 1_2:+57050527 None:intergenic
CTCAACGTCGCTACTCGCAA+TGG 0.579241 1_2:+57054800 None:intergenic
AAACCAATAATTCATCAGTA+CGG 0.589880 1_2:+57050423 None:intergenic
GTTGAAGGTGAAAGGGAACG+GGG 0.590747 1_2:+57055107 None:intergenic
GCTGCTCTTAAAGAAATGAA+TGG 0.593104 1_2:-57051716 Msa0079270:intron
ATTCTTGCAGAGTGGCCTGA+AGG 0.594669 1_2:-57054711 Msa0079270:intron
GCTTGACCAGCAGCTTTCCG+AGG 0.598696 1_2:+57054747 None:intergenic
GGCGTAGTGAGAGGTGGTTG+GGG 0.602253 1_2:+57055082 None:intergenic
ATGTTTGATTGATCGAATTG+GGG 0.604585 1_2:+57055231 None:intergenic
GAGCAGCAGCAAGGTCAGCA+GGG 0.605494 1_2:+57051732 None:intergenic
GTAGGGTGCGGCGTAGTGAG+AGG 0.607879 1_2:+57055073 None:intergenic
GATGATTATCGGCTCTTCTG+CGG 0.609558 1_2:-57053500 Msa0079270:five_prime_UTR
GGGTGCGGCGTAGTGAGAGG+TGG 0.612059 1_2:+57055076 None:intergenic
GGCTCTTGAGAATGTGAAGG+CGG 0.612668 1_2:-57054823 Msa0079270:five_prime_UTR
ACGGGGCCGACAATTGGCGG+CGG 0.614773 1_2:+57055023 None:intergenic
GGTTGAGATGATGAGGATGA+AGG 0.616374 1_2:+57055160 None:intergenic
TGGAACGAATCGTGAATCGA+TGG 0.619092 1_2:+57055201 None:intergenic
TGATGCATTGGAGAAACAGA+AGG 0.623280 1_2:-57050796 Msa0079270:intron
TGGCGGCGGAGGAAGCTGCA+CGG 0.623515 1_2:+57055037 None:intergenic
GCATTGGAATATGTGAATTG+GGG 0.628373 1_2:+57055139 None:intergenic
GTTTGGTTTAGGTTTGTTTG+GGG 0.629522 1_2:+57055270 None:intergenic
TTTCTTTAAGAGCAGCAGCA+AGG 0.635705 1_2:+57051723 None:intergenic
TCAATATATTAAGTGGCCTG+AGG 0.638944 1_2:+57050463 None:intergenic
AACTACGCAAGAGTAAGTGG+AGG 0.640310 1_2:-57050833 Msa0079270:CDS
TGTTTGATTGATCGAATTGG+GGG 0.641436 1_2:+57055232 None:intergenic
GGAGGCTCTTGAGAATGTGA+AGG 0.648124 1_2:-57054826 Msa0079270:five_prime_UTR
TTGGTTTCAGGTAAGTACGT+CGG 0.656926 1_2:-57050870 Msa0079270:intron
TGAGATGATGAGGATGAAGG+TGG 0.660814 1_2:+57055163 None:intergenic
AGGATCCTATTCTTGCAGAG+TGG 0.663088 1_2:-57054719 Msa0079270:five_prime_UTR
TGCACAGATAATTACGCCGG+AGG 0.666682 1_2:-57054844 Msa0079270:five_prime_UTR
ACTACGCAAGAGTAAGTGGA+GGG 0.675815 1_2:-57050832 Msa0079270:CDS
GAATTGGGGTTGAGATGATG+AGG 0.677929 1_2:+57055153 None:intergenic
AGATGCACAGATAATTACGC+CGG 0.679077 1_2:-57054847 Msa0079270:five_prime_UTR
CTGAGGCATAACCTAACGAG+AGG 0.680329 1_2:+57050480 None:intergenic
ACTAACTTGATATTGCGGAA+CGG 0.692194 1_2:+57054980 None:intergenic
GGAACGGAGTAAGCAGCAGG+CGG 0.735035 1_2:+57054996 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATCTAAAATCTAAAAAT+TGG + chr1_2:57050387-57050406 None:intergenic 10.0%
!! AAATAAATTAATTAACGAAT+TGG + chr1_2:57051068-57051087 None:intergenic 10.0%
!!! AATTATATTTTTGTAAACAA+TGG + chr1_2:57053385-57053404 None:intergenic 10.0%
!!! AACATAAAAACTTTTTTATT+TGG + chr1_2:57053570-57053589 None:intergenic 10.0%
!! AATGTGAAAATTAAAAATAA+TGG + chr1_2:57053783-57053802 None:intergenic 10.0%
!!! AAATTATCAATTTAGAATAT+GGG - chr1_2:57054286-57054305 Msa0079270:intron 10.0%
!!! TTCTTTTATACATAAATAAA+TGG - chr1_2:57054387-57054406 Msa0079270:intron 10.0%
!!! ATTTTAGAATAAGAAAATTC+TGG - chr1_2:57050402-57050421 Msa0079270:three_prime_UTR 15.0%
!! TTTAATGTATATTGGAAATT+TGG - chr1_2:57051086-57051105 Msa0079270:intron 15.0%
!!! TATATCTGATATTTTTTGAA+AGG - chr1_2:57051730-57051749 Msa0079270:CDS 15.0%
!!! AATTCTTTTATTTTTAGTTG+TGG - chr1_2:57052332-57052351 Msa0079270:intron 15.0%
!!! TTCATAATTTACATTTTATC+AGG - chr1_2:57052449-57052468 Msa0079270:intron 15.0%
!!! GTTATTTATTTTGTTTGTTA+CGG - chr1_2:57052638-57052657 Msa0079270:intron 15.0%
!!! TTATTTATTTTGTTTGTTAC+GGG - chr1_2:57052639-57052658 Msa0079270:intron 15.0%
!! AAACTTGTAAATTTATATAC+GGG + chr1_2:57052714-57052733 None:intergenic 15.0%
!! CAAACTTGTAAATTTATATA+CGG + chr1_2:57052715-57052734 None:intergenic 15.0%
!!! TTTGTAATTTGTTTTGATTA+AGG - chr1_2:57053875-57053894 Msa0079270:intron 15.0%
!!! ATAATATTGACTTTTTAGTT+AGG - chr1_2:57054119-57054138 Msa0079270:intron 15.0%
!!! TAATATTGACTTTTTAGTTA+GGG - chr1_2:57054120-57054139 Msa0079270:intron 15.0%
!!! GAAATTATCAATTTAGAATA+TGG - chr1_2:57054285-57054304 Msa0079270:intron 15.0%
!!! AATTATCAATTTAGAATATG+GGG - chr1_2:57054287-57054306 Msa0079270:intron 15.0%
!!! TACATAAATAAATGGATTTA+TGG - chr1_2:57054395-57054414 Msa0079270:intron 15.0%
!! ATATTTGTCAATATATTAAG+TGG + chr1_2:57055255-57055274 None:intergenic 15.0%
!! AAAAAACTAACTTGATATTG+CGG + chr1_2:57050736-57050755 None:intergenic 20.0%
!!! TCTTCTTTTCAATTTGTATT+TGG - chr1_2:57050760-57050779 Msa0079270:intron 20.0%
!! TTCAATTTGTATTTGGAAAT+TGG - chr1_2:57050767-57050786 Msa0079270:intron 20.0%
!! TCAATTTGTATTTGGAAATT+GGG - chr1_2:57050768-57050787 Msa0079270:intron 20.0%
!! AATGTAGGTTATTTATCATA+GGG - chr1_2:57051568-57051587 Msa0079270:intron 20.0%
!!! GATTGTGAAATTAAAGTTTT+TGG - chr1_2:57051637-57051656 Msa0079270:intron 20.0%
!!! AAATTAAAGTTTTTGGTGTA+GGG - chr1_2:57051644-57051663 Msa0079270:intron 20.0%
!! TCCTTAATTTAAAGAAGAAA+AGG - chr1_2:57051818-57051837 Msa0079270:intron 20.0%
!!! TCCTTTTCTTCTTTAAATTA+AGG + chr1_2:57051822-57051841 None:intergenic 20.0%
!! ACAAGTTAGATAACTATTTA+TGG - chr1_2:57052155-57052174 Msa0079270:intron 20.0%
!! TAATCATCTGATTATACAAA+AGG + chr1_2:57052196-57052215 None:intergenic 20.0%
!! TTGTATAATCAGATGATTAT+CGG - chr1_2:57052197-57052216 Msa0079270:intron 20.0%
!! TAAAATGTAAATTATGAAGC+AGG + chr1_2:57052447-57052466 None:intergenic 20.0%
!! CGTATATAAATTTACAAGTT+TGG - chr1_2:57052713-57052732 Msa0079270:intron 20.0%
!! TTCATTTGTGATGATAAAAT+TGG - chr1_2:57053167-57053186 Msa0079270:intron 20.0%
!! TAAAAATAAGTCAATCCAAA+CGG + chr1_2:57053526-57053545 None:intergenic 20.0%
!! ATTATTTGCAAATATGTTTG+TGG - chr1_2:57053839-57053858 Msa0079270:intron 20.0%
!! ACTAAAAAGTCAATATTATC+TGG + chr1_2:57054118-57054137 None:intergenic 20.0%
!! TCAAATAATTAAGTGAAGTT+TGG - chr1_2:57054654-57054673 Msa0079270:intron 20.0%
! AATGTTTGATTGATCGAATT+GGG + chr1_2:57050481-57050500 None:intergenic 25.0%
! TGCAAGTGTAAAAATATGTT+TGG - chr1_2:57051183-57051202 Msa0079270:intron 25.0%
!!! AGAATTGATTTTGACATGTT+TGG + chr1_2:57051282-57051301 None:intergenic 25.0%
! CAAGAATACAATTTCCATAT+AGG + chr1_2:57051380-57051399 None:intergenic 25.0%
! CAATGTAGGTTATTTATCAT+AGG - chr1_2:57051567-57051586 Msa0079270:intron 25.0%
! ATGTAGGTTATTTATCATAG+GGG - chr1_2:57051569-57051588 Msa0079270:intron 25.0%
!!! GAAATTAAAGTTTTTGGTGT+AGG - chr1_2:57051643-57051662 Msa0079270:intron 25.0%
! AATAAAACTTAGGGAATGTT+TGG + chr1_2:57051875-57051894 None:intergenic 25.0%
!!! TTTTATTTTTAGTTGTGGCT+GGG - chr1_2:57052337-57052356 Msa0079270:intron 25.0%
!!! TTCTCAGATTTTTGTTTGAA+GGG - chr1_2:57052384-57052403 Msa0079270:intron 25.0%
! TCATATTTGAGCTTATATAC+AGG + chr1_2:57052987-57053006 None:intergenic 25.0%
! TACACAGAATTGCATATAAA+TGG - chr1_2:57054337-57054356 Msa0079270:intron 25.0%
! ACACAGAATTGCATATAAAT+GGG - chr1_2:57054338-57054357 Msa0079270:intron 25.0%
!! ATGGGTTATAAATTATACGA+TGG - chr1_2:57054356-57054375 Msa0079270:intron 25.0%
! AATAACTGATCTCATCTATT+TGG - chr1_2:57054736-57054755 Msa0079270:five_prime_UTR 25.0%
! AAACAACAAAGGAATTAAGT+TGG + chr1_2:57054991-57055010 None:intergenic 25.0%
!! ATACTCTTTCTTGACATTTT+TGG + chr1_2:57055041-57055060 None:intergenic 25.0%
! ATTCCAATGTAACAAATTGA+AGG - chr1_2:57055154-57055173 Msa0079270:five_prime_UTR 25.0%
! TCTTTAAATAGCACATTCTT+GGG + chr1_2:57055200-57055219 None:intergenic 25.0%
! ATCTTTAAATAGCACATTCT+TGG + chr1_2:57055201-57055220 None:intergenic 25.0%
! AAACCAATAATTCATCAGTA+CGG + chr1_2:57055288-57055307 None:intergenic 25.0%
ATGTTTGATTGATCGAATTG+GGG + chr1_2:57050480-57050499 None:intergenic 30.0%
CAATGTTTGATTGATCGAAT+TGG + chr1_2:57050482-57050501 None:intergenic 30.0%
GAAATTGGGAAAAGAGAATT+TGG - chr1_2:57050782-57050801 Msa0079270:intron 30.0%
!! ATTGTGTTGTTTGATTGAAC+AGG - chr1_2:57050819-57050838 Msa0079270:CDS 30.0%
! ATCGATTCTAACTTAAAGCT+AGG + chr1_2:57051226-57051245 None:intergenic 30.0%
CATGTTTCATTGAAGTGATT+TGG - chr1_2:57051320-57051339 Msa0079270:intron 30.0%
!! CTAGGAAGGTTTTTCAATTT+TGG - chr1_2:57051453-57051472 Msa0079270:intron 30.0%
TCATGATATGTTCACATGTA+AGG - chr1_2:57051498-57051517 Msa0079270:intron 30.0%
GAAACAAGATATTGCAATGT+AGG - chr1_2:57051553-57051572 Msa0079270:intron 30.0%
! TATTTATCATAGGGGTCTTT+TGG - chr1_2:57051577-57051596 Msa0079270:intron 30.0%
! GGACTGGTAAATAAAACTTA+GGG + chr1_2:57051884-57051903 None:intergenic 30.0%
GAGATGAAACAAACATAACA+GGG + chr1_2:57051951-57051970 None:intergenic 30.0%
AGAGATGAAACAAACATAAC+AGG + chr1_2:57051952-57051971 None:intergenic 30.0%
GAGTTACAAGAAAACAGTAA+TGG + chr1_2:57051988-57052007 None:intergenic 30.0%
TTTCTTGTAACTCTTACACT+TGG - chr1_2:57051995-57052014 Msa0079270:intron 30.0%
TATGATATGCACGATTCAAT+TGG - chr1_2:57052051-57052070 Msa0079270:intron 30.0%
!!! CTTTTATTTTTAGTTGTGGC+TGG - chr1_2:57052336-57052355 Msa0079270:intron 30.0%
!! CTTCTCAGATTTTTGTTTGA+AGG - chr1_2:57052383-57052402 Msa0079270:intron 30.0%
TTAACGATTTGTGTATCGTA+AGG - chr1_2:57052416-57052435 Msa0079270:intron 30.0%
GGGCACTTGAAATTATTAAA+TGG - chr1_2:57052554-57052573 Msa0079270:intron 30.0%
AATTCCACAATACTTTCTAG+GGG + chr1_2:57052757-57052776 None:intergenic 30.0%
GAATTCCACAATACTTTCTA+GGG + chr1_2:57052758-57052777 None:intergenic 30.0%
TTCAATAATACGATCCTGTT+TGG - chr1_2:57052779-57052798 Msa0079270:intron 30.0%
! GTCGATTTAATAAGCTATCA+TGG - chr1_2:57052872-57052891 Msa0079270:intron 30.0%
TGAAATAAGTCAATCCAAAC+AGG - chr1_2:57053004-57053023 Msa0079270:intron 30.0%
TAAGGATTCAAATAGTGTGT+TGG - chr1_2:57053039-57053058 Msa0079270:intron 30.0%
! ATTTTGTTACCAGAAAGAAG+AGG - chr1_2:57053466-57053485 Msa0079270:five_prime_UTR 30.0%
! TTTTGTTACCAGAAAGAAGA+GGG - chr1_2:57053467-57053486 Msa0079270:five_prime_UTR 30.0%
TGAGAGTGGATATATACTTA+TGG - chr1_2:57053499-57053518 Msa0079270:five_prime_UTR 30.0%
ATATATACTTATGGTCCGTT+TGG - chr1_2:57053508-57053527 Msa0079270:intron 30.0%
TTCATATGAAATTAAGCGTC+TGG + chr1_2:57053736-57053755 None:intergenic 30.0%
TCATGTCTAAATATCTGCTT+TGG - chr1_2:57054069-57054088 Msa0079270:intron 30.0%
!!! GACTTTTTAGTTAGGGATAT+AGG - chr1_2:57054127-57054146 Msa0079270:intron 30.0%
ACAATTCTACCATAGATGAT+TGG - chr1_2:57054486-57054505 Msa0079270:intron 30.0%
!!! TTACTCTTGCGTAGTTTTAT+TGG + chr1_2:57054871-57054890 None:intergenic 30.0%
!!! TTTTTGGCTTCTTCTGAATA+TGG + chr1_2:57055025-57055044 None:intergenic 30.0%
TATTCTGCACAAGTGAAAAT+AGG - chr1_2:57055058-57055077 Msa0079270:five_prime_UTR 30.0%
AGGCCAGAATATGTATAAAT+CGG - chr1_2:57055078-57055097 Msa0079270:five_prime_UTR 30.0%
AACCCGATTTATACATATTC+TGG + chr1_2:57055084-57055103 None:intergenic 30.0%
!! GAACCTTCAATTTGTTACAT+TGG + chr1_2:57055160-57055179 None:intergenic 30.0%
TCTTGGGAAAGAAAATCTAA+AGG + chr1_2:57055184-57055203 None:intergenic 30.0%
! ATACCGTACTGATGAATTAT+TGG - chr1_2:57055282-57055301 Msa0079270:five_prime_UTR 30.0%
! GTTTGGTTTAGGTTTGTTTG+GGG + chr1_2:57050441-57050460 None:intergenic 35.0%
! CGTTTGGTTTAGGTTTGTTT+GGG + chr1_2:57050442-57050461 None:intergenic 35.0%
! TCTAAAATCGCGTTTGGTTT+AGG + chr1_2:57050452-57050471 None:intergenic 35.0%
! GGAAAATCTAAAATCGCGTT+TGG + chr1_2:57050458-57050477 None:intergenic 35.0%
TGTTTGATTGATCGAATTGG+GGG + chr1_2:57050479-57050498 None:intergenic 35.0%
GCATTGGAATATGTGAATTG+GGG + chr1_2:57050572-57050591 None:intergenic 35.0%
! GGCATTGGAATATGTGAATT+GGG + chr1_2:57050573-57050592 None:intergenic 35.0%
ACTAACTTGATATTGCGGAA+CGG + chr1_2:57050731-57050750 None:intergenic 35.0%
CATGATGATACAATACCTTC+AGG + chr1_2:57051015-57051034 None:intergenic 35.0%
ATTGGAAATTTGGTTGTGAG+AGG - chr1_2:57051096-57051115 Msa0079270:intron 35.0%
GTCAAAATCAATTATGCGTG+AGG - chr1_2:57051252-57051271 Msa0079270:intron 35.0%
!! ATTTTGGTCTGTTGAGTGTA+TGG - chr1_2:57051469-57051488 Msa0079270:intron 35.0%
!! ACCTTAAGAATGTGTTTTGG+AGG - chr1_2:57051667-57051686 Msa0079270:intron 35.0%
!! CCTTAAGAATGTGTTTTGGA+GGG - chr1_2:57051668-57051687 Msa0079270:intron 35.0%
!!! CTTAAGAATGTGTTTTGGAG+GGG - chr1_2:57051669-57051688 Msa0079270:intron 35.0%
! AATGTTTGGATGGAGAGTTT+TGG + chr1_2:57051861-57051880 None:intergenic 35.0%
AAACTTAGGGAATGTTTGGA+TGG + chr1_2:57051871-57051890 None:intergenic 35.0%
! GGGACTGGTAAATAAAACTT+AGG + chr1_2:57051885-57051904 None:intergenic 35.0%
!!! TCCCCAGTCTTTTTTGTTTA+TGG - chr1_2:57051901-57051920 Msa0079270:intron 35.0%
CCCATAAACAAAAAAGACTG+GGG + chr1_2:57051905-57051924 None:intergenic 35.0%
!!! CCCCAGTCTTTTTTGTTTAT+GGG - chr1_2:57051902-57051921 Msa0079270:intron 35.0%
CCCCATAAACAAAAAAGACT+GGG + chr1_2:57051906-57051925 None:intergenic 35.0%
!!! CCCAGTCTTTTTTGTTTATG+GGG - chr1_2:57051903-57051922 Msa0079270:intron 35.0%
! GTTTATGGGGCTTATTGTTT+TGG - chr1_2:57051916-57051935 Msa0079270:intron 35.0%
CAAGAAAACAGTAATGGTTG+AGG + chr1_2:57051982-57052001 None:intergenic 35.0%
TAAGAACAAGAGAGGATCAA+CGG + chr1_2:57052033-57052052 None:intergenic 35.0%
GCATATCATAAGAACAAGAG+AGG + chr1_2:57052041-57052060 None:intergenic 35.0%
!!! GGCGATGGATTCTATTTTTT+AGG - chr1_2:57052072-57052091 Msa0079270:intron 35.0%
ACTTACTCTTGCCATGTTAA+AGG + chr1_2:57052293-57052312 None:intergenic 35.0%
TTTAACATGGCAAGAGTAAG+TGG - chr1_2:57052292-57052311 Msa0079270:intron 35.0%
TTAACATGGCAAGAGTAAGT+GGG - chr1_2:57052293-57052312 Msa0079270:intron 35.0%
! ATACACTATTTTGTCATCCC+AGG - chr1_2:57052492-57052511 Msa0079270:intron 35.0%
! TACACTATTTTGTCATCCCA+GGG - chr1_2:57052493-57052512 Msa0079270:intron 35.0%
TGTGAACAATGAGCAATGAA+TGG + chr1_2:57052528-57052547 None:intergenic 35.0%
TTTGTTACGGGATCTCAAAT+CGG - chr1_2:57052651-57052670 Msa0079270:intron 35.0%
CGAATTCCACAATACTTTCT+AGG + chr1_2:57052759-57052778 None:intergenic 35.0%
AAACTGTTTGGTAGAGCTTA+TGG + chr1_2:57052950-57052969 None:intergenic 35.0%
GAAACACTAGTGAAACTGTT+TGG + chr1_2:57052962-57052981 None:intergenic 35.0%
! TTCAAATAGTGTGTTGGCAA+AGG - chr1_2:57053045-57053064 Msa0079270:intron 35.0%
! TCAAATAGTGTGTTGGCAAA+GGG - chr1_2:57053046-57053065 Msa0079270:intron 35.0%
! TCTGCATTTTACATCAAGTC+TGG - chr1_2:57053311-57053330 Msa0079270:intron 35.0%
CATAAAGTAACCCAGAATGA+AGG + chr1_2:57053357-57053376 None:intergenic 35.0%
TATTGTTCATACGCTTGTCA+AGG + chr1_2:57053652-57053671 None:intergenic 35.0%
TATGAAATTAAGCGTCTGGT+TGG + chr1_2:57053732-57053751 None:intergenic 35.0%
AGGTATCTTTGATCTTGTCT+AGG - chr1_2:57053895-57053914 Msa0079270:intron 35.0%
TAAGCGAACTGGAAAAACAA+AGG - chr1_2:57053928-57053947 Msa0079270:intron 35.0%
AAGCGAACTGGAAAAACAAA+GGG - chr1_2:57053929-57053948 Msa0079270:intron 35.0%
GCTGCTCTTAAAGAAATGAA+TGG - chr1_2:57053992-57054011 Msa0079270:intron 35.0%
TAGGTTTGCCAAAATCAACA+AGG - chr1_2:57054146-57054165 Msa0079270:intron 35.0%
!!! TCAAACCTTGCTGTTGATTT+TGG + chr1_2:57054267-57054286 None:intergenic 35.0%
! TCAATGACGGAATTCAACAA+TGG + chr1_2:57054432-57054451 None:intergenic 35.0%
ATTGTTGAATTCCGTCATTG+AGG - chr1_2:57054431-57054450 Msa0079270:intron 35.0%
GAGTGATATTATCAGCAAGA+AGG - chr1_2:57054533-57054552 Msa0079270:intron 35.0%
GTAACATGAGTTCCTATCAT+AGG - chr1_2:57054555-57054574 Msa0079270:intron 35.0%
ACTGATCTCATCTATTTGGA+AGG - chr1_2:57054740-57054759 Msa0079270:five_prime_UTR 35.0%
!! ATCTATTTGGAAGGTGCTTT+GGG - chr1_2:57054749-57054768 Msa0079270:five_prime_UTR 35.0%
AAACCAAGATATCGAAGTCA+GGG + chr1_2:57054825-57054844 None:intergenic 35.0%
TAAAACTACGCAAGAGTAAG+TGG - chr1_2:57054872-57054891 Msa0079270:intron 35.0%
GAGAACTGATTATGATGCAT+TGG - chr1_2:57054900-57054919 Msa0079270:intron 35.0%
TTCTGCAATGCAAACAACAA+AGG + chr1_2:57055002-57055021 None:intergenic 35.0%
GGCCAGAATATGTATAAATC+GGG - chr1_2:57055079-57055098 Msa0079270:five_prime_UTR 35.0%
TCAATATATTAAGTGGCCTG+AGG + chr1_2:57055248-57055267 None:intergenic 35.0%
! AAAGGGTATAACGTGACATA+AGG + chr1_2:57055322-57055341 None:intergenic 35.0%
! GCGTTTGGTTTAGGTTTGTT+TGG + chr1_2:57050443-57050462 None:intergenic 40.0%
!! GGGCATTGGAATATGTGAAT+TGG + chr1_2:57050574-57050593 None:intergenic 40.0%
TTGTTGAAGGTGAAAGGGAA+CGG + chr1_2:57050606-57050625 None:intergenic 40.0%
AGATGCACAGATAATTACGC+CGG - chr1_2:57050861-57050880 Msa0079270:CDS 40.0%
!! TGTGAGAGGTATTGTGTGTT+TGG - chr1_2:57051110-57051129 Msa0079270:intron 40.0%
ACAATTTCCATATAGGCTCG+TGG + chr1_2:57051373-57051392 None:intergenic 40.0%
TAACATACGAACGTAGTGAC+TGG - chr1_2:57051414-57051433 Msa0079270:intron 40.0%
! GGGACCTTAAGAATGTGTTT+TGG - chr1_2:57051664-57051683 Msa0079270:intron 40.0%
CCCTCCAAAACACATTCTTA+AGG + chr1_2:57051671-57051690 None:intergenic 40.0%
!! TTTGGATGGAGAGTTTTGGT+GGG + chr1_2:57051857-57051876 None:intergenic 40.0%
AAACAAAAAAGACTGGGGAC+TGG + chr1_2:57051900-57051919 None:intergenic 40.0%
GCCCCATAAACAAAAAAGAC+TGG + chr1_2:57051907-57051926 None:intergenic 40.0%
!!! GGGCTTATTGTTTTGGAAGT+TGG - chr1_2:57051923-57051942 Msa0079270:intron 40.0%
CTCTTGCCATGTTAAAGGAA+GGG + chr1_2:57052288-57052307 None:intergenic 40.0%
ACTCTTGCCATGTTAAAGGA+AGG + chr1_2:57052289-57052308 None:intergenic 40.0%
CGATTTGTGTATCGTAAGGT+AGG - chr1_2:57052420-57052439 Msa0079270:intron 40.0%
TGAATGGTGAAAGAAACCCT+GGG + chr1_2:57052512-57052531 None:intergenic 40.0%
ATGAATGGTGAAAGAAACCC+TGG + chr1_2:57052513-57052532 None:intergenic 40.0%
TGCTCATTGTTCACAAAGCA+CGG - chr1_2:57052533-57052552 Msa0079270:intron 40.0%
GGATCTCAAATCGGTTGAAT+TGG - chr1_2:57052660-57052679 Msa0079270:intron 40.0%
AAATCGGTTGAATTGGAGTC+AGG - chr1_2:57052667-57052686 Msa0079270:intron 40.0%
!! CTTTCCCCTAGAAAGTATTG+TGG - chr1_2:57052750-57052769 Msa0079270:intron 40.0%
! GTTGAGGTGTTTATCCAAAC+AGG + chr1_2:57052796-57052815 None:intergenic 40.0%
ACGCTATAAGTGCTTAGTTG+AGG + chr1_2:57052812-57052831 None:intergenic 40.0%
AAGCTATCATGGAGAGCTTA+TGG - chr1_2:57052883-57052902 Msa0079270:intron 40.0%
GAGCTTATGGAAACAGCATA+TGG + chr1_2:57052937-57052956 None:intergenic 40.0%
TCAATCCAAACAGGCTCATA+TGG - chr1_2:57053013-57053032 Msa0079270:intron 40.0%
TATTGCCATATGAGCCTGTT+TGG + chr1_2:57053021-57053040 None:intergenic 40.0%
AACAGGCTCATATGGCAATA+AGG - chr1_2:57053021-57053040 Msa0079270:intron 40.0%
! CAAATAGTGTGTTGGCAAAG+GGG - chr1_2:57053047-57053066 Msa0079270:intron 40.0%
AAATATTCCCACCCATAACG+AGG - chr1_2:57053088-57053107 Msa0079270:intron 40.0%
AATATTCCCACCCATAACGA+GGG - chr1_2:57053089-57053108 Msa0079270:intron 40.0%
TCTCACTTATCCCTCGTTAT+GGG + chr1_2:57053102-57053121 None:intergenic 40.0%
!! TTTGAAAGCACCCTTATCTC+TGG + chr1_2:57053146-57053165 None:intergenic 40.0%
GTTGACTGATTATTGAGCCA+AGG - chr1_2:57053250-57053269 Msa0079270:intron 40.0%
CACTAGAGAAGGAAATACCT+TGG + chr1_2:57053270-57053289 None:intergenic 40.0%
! CAAGGTATTTCCTTCTCTAG+TGG - chr1_2:57053268-57053287 Msa0079270:intron 40.0%
TTCACACATTCCACTAGAGA+AGG + chr1_2:57053281-57053300 None:intergenic 40.0%
CTAATCAGAGCCTTCATTCT+GGG - chr1_2:57053344-57053363 Msa0079270:intron 40.0%
CTAGTTAACACTTAGCAGAC+AGG + chr1_2:57053809-57053828 None:intergenic 40.0%
GTTGTTAGAGATAAGCGAAC+TGG - chr1_2:57053917-57053936 Msa0079270:intron 40.0%
ACTGGAAAAACAAAGGGCTA+TGG - chr1_2:57053935-57053954 Msa0079270:intron 40.0%
! TTTCTTTAAGAGCAGCAGCA+AGG + chr1_2:57053988-57054007 None:intergenic 40.0%
!!! AGCAGCTTCCTTGTTGATTT+TGG + chr1_2:57054157-57054176 None:intergenic 40.0%
GTTTGCCAAAATCAACAGCA+AGG - chr1_2:57054259-57054278 Msa0079270:intron 40.0%
ACGGAATTCAACAATGGCAT+TGG + chr1_2:57054426-57054445 None:intergenic 40.0%
GCTTCTTATTGCCTCAATGA+CGG + chr1_2:57054445-57054464 None:intergenic 40.0%
CATTGAGGCAATAAGAAGCA+AGG - chr1_2:57054446-57054465 Msa0079270:intron 40.0%
CATGTCAGCTTTCCTATGAT+AGG + chr1_2:57054570-57054589 None:intergenic 40.0%
AGCTGACATGTTCTTGTTCT+AGG - chr1_2:57054580-57054599 Msa0079270:intron 40.0%
! TGACATGTTCTTGTTCTAGG+TGG - chr1_2:57054583-57054602 Msa0079270:intron 40.0%
! TGTTCTTGTTCTAGGTGGTT+TGG - chr1_2:57054588-57054607 Msa0079270:intron 40.0%
TTTGGACGTGTGGAAAAGAT+AGG - chr1_2:57054606-57054625 Msa0079270:intron 40.0%
CATGACGACATAATGTCTCA+TGG + chr1_2:57054709-57054728 None:intergenic 40.0%
!! CATCTATTTGGAAGGTGCTT+TGG - chr1_2:57054748-57054767 Msa0079270:five_prime_UTR 40.0%
GAAACCAAGATATCGAAGTC+AGG + chr1_2:57054826-57054845 None:intergenic 40.0%
GACTTCGATATCTTGGTTTC+AGG - chr1_2:57054826-57054845 Msa0079270:five_prime_UTR 40.0%
! TTGGTTTCAGGTAAGTACGT+CGG - chr1_2:57054838-57054857 Msa0079270:five_prime_UTR 40.0%
TGATGCATTGGAGAAACAGA+AGG - chr1_2:57054912-57054931 Msa0079270:intron 40.0%
AGATGTGTAAACCTCTCGTT+AGG - chr1_2:57055217-57055236 Msa0079270:five_prime_UTR 40.0%
TGGAACGAATCGTGAATCGA+TGG + chr1_2:57050510-57050529 None:intergenic 45.0%
TGAGATGATGAGGATGAAGG+TGG + chr1_2:57050548-57050567 None:intergenic 45.0%
GGTTGAGATGATGAGGATGA+AGG + chr1_2:57050551-57050570 None:intergenic 45.0%
GAATTGGGGTTGAGATGATG+AGG + chr1_2:57050558-57050577 None:intergenic 45.0%
TGTTGAAGGTGAAAGGGAAC+GGG + chr1_2:57050605-57050624 None:intergenic 45.0%
TGGGGTTGTTGAAGGTGAAA+GGG + chr1_2:57050611-57050630 None:intergenic 45.0%
TTGGGGTTGTTGAAGGTGAA+AGG + chr1_2:57050612-57050631 None:intergenic 45.0%
TTCACATTCTCAAGAGCCTC+CGG + chr1_2:57050883-57050902 None:intergenic 45.0%
CCAAGAAGAAAGCTGTTCCT+CGG - chr1_2:57050944-57050963 Msa0079270:intron 45.0%
AGGATCCTATTCTTGCAGAG+TGG - chr1_2:57050989-57051008 Msa0079270:intron 45.0%
TTTCCTTCCACGAGCCTATA+TGG - chr1_2:57051363-57051382 Msa0079270:intron 45.0%
TTTCCATATAGGCTCGTGGA+AGG + chr1_2:57051369-57051388 None:intergenic 45.0%
! TAGTGACTGGTTGCGATACT+TGG - chr1_2:57051427-57051446 Msa0079270:intron 45.0%
! AGTGACTGGTTGCGATACTT+GGG - chr1_2:57051428-57051447 Msa0079270:intron 45.0%
!! GTTTGGATGGAGAGTTTTGG+TGG + chr1_2:57051858-57051877 None:intergenic 45.0%
ATGCACGATTCAATTGGCGA+TGG - chr1_2:57052057-57052076 Msa0079270:intron 45.0%
!! GATGATTATCGGCTCTTCTG+CGG - chr1_2:57052208-57052227 Msa0079270:intron 45.0%
GCGATTCCCTTCCTTTAACA+TGG - chr1_2:57052279-57052298 Msa0079270:intron 45.0%
GCTCATTGTTCACAAAGCAC+GGG - chr1_2:57052534-57052553 Msa0079270:intron 45.0%
!!! TCAGGTCGAGTTTCTGGTTT+TGG - chr1_2:57052685-57052704 Msa0079270:intron 45.0%
!!! GGCAAAGGGGTTTTTAAGTG+TGG - chr1_2:57053060-57053079 Msa0079270:intron 45.0%
ACTTATCCCTCGTTATGGGT+GGG + chr1_2:57053098-57053117 None:intergenic 45.0%
GTCTCACTTATCCCTCGTTA+TGG + chr1_2:57053103-57053122 None:intergenic 45.0%
TTGAGTGTCCACCAGAGATA+AGG - chr1_2:57053132-57053151 Msa0079270:intron 45.0%
TGAGTGTCCACCAGAGATAA+GGG - chr1_2:57053133-57053152 Msa0079270:intron 45.0%
GCTAATCAGAGCCTTCATTC+TGG - chr1_2:57053343-57053362 Msa0079270:intron 45.0%
ATAACGCACCCTCTTCTTTC+TGG + chr1_2:57053478-57053497 None:intergenic 45.0%
CTCGTGTGACCAATCATCTA+TGG + chr1_2:57054498-57054517 None:intergenic 45.0%
TTGGTCACACGAGACAAGAT+AGG - chr1_2:57054505-57054524 Msa0079270:intron 45.0%
!! GCTTTGGGTGTTGTTGTAGT+AGG - chr1_2:57054764-57054783 Msa0079270:five_prime_UTR 45.0%
GTACCCTGACTTCGATATCT+TGG - chr1_2:57054819-57054838 Msa0079270:five_prime_UTR 45.0%
CAGGTAAGTACGTCGGAAAT+CGG - chr1_2:57054845-57054864 Msa0079270:five_prime_UTR 45.0%
AACTACGCAAGAGTAAGTGG+AGG - chr1_2:57054875-57054894 Msa0079270:intron 45.0%
ACTACGCAAGAGTAAGTGGA+GGG - chr1_2:57054876-57054895 Msa0079270:intron 45.0%
!!! TAATTTATTTTAATGTATAT+TGG - chr1_2:57051078-57051097 Msa0079270:intron 5.0%
!! GGTGGTGTCGTCATTGCAAT+TGG + chr1_2:57050530-57050549 None:intergenic 50.0%
AAAGGGAACGGGGAAGTAAG+GGG + chr1_2:57050594-57050613 None:intergenic 50.0%
GAAAGGGAACGGGGAAGTAA+GGG + chr1_2:57050595-57050614 None:intergenic 50.0%
TGAAAGGGAACGGGGAAGTA+AGG + chr1_2:57050596-57050615 None:intergenic 50.0%
GTTGAAGGTGAAAGGGAACG+GGG + chr1_2:57050604-57050623 None:intergenic 50.0%
TGCACAGATAATTACGCCGG+AGG - chr1_2:57050864-57050883 Msa0079270:intron 50.0%
GGAGGCTCTTGAGAATGTGA+AGG - chr1_2:57050882-57050901 Msa0079270:intron 50.0%
GGCTCTTGAGAATGTGAAGG+CGG - chr1_2:57050885-57050904 Msa0079270:intron 50.0%
CCGAGGAACAGCTTTCTTCT+TGG + chr1_2:57050947-57050966 None:intergenic 50.0%
GAAAGCTGCTGGTCAAGCTT+GGG - chr1_2:57050966-57050985 Msa0079270:intron 50.0%
TCAGGCCACTCTGCAAGAAT+AGG + chr1_2:57050997-57051016 None:intergenic 50.0%
ATTCTTGCAGAGTGGCCTGA+AGG - chr1_2:57050997-57051016 Msa0079270:intron 50.0%
!! GAGTTTTGGTGGGTAGAGGA+GGG + chr1_2:57051847-57051866 None:intergenic 50.0%
!! AGAGTTTTGGTGGGTAGAGG+AGG + chr1_2:57051848-57051867 None:intergenic 50.0%
!! TGGAGAGTTTTGGTGGGTAG+AGG + chr1_2:57051851-57051870 None:intergenic 50.0%
TTGGAGTCAGGTCGAGTTTC+TGG - chr1_2:57052679-57052698 Msa0079270:intron 50.0%
CACTTATCCCTCGTTATGGG+TGG + chr1_2:57053099-57053118 None:intergenic 50.0%
!! GAAAGCACCCTTATCTCTGG+TGG + chr1_2:57053143-57053162 None:intergenic 50.0%
! GAGGGTGCGTTATTTGAGAG+TGG - chr1_2:57053485-57053504 Msa0079270:five_prime_UTR 50.0%
! TTCTAGGTGGTTTGGACGTG+TGG - chr1_2:57054596-57054615 Msa0079270:intron 50.0%
CTGAGGCATAACCTAACGAG+AGG + chr1_2:57055231-57055250 None:intergenic 50.0%
CTCTCGTTAGGTTATGCCTC+AGG - chr1_2:57055229-57055248 Msa0079270:five_prime_UTR 50.0%
! AACGGGGAAGTAAGGGGCAT+TGG + chr1_2:57050588-57050607 None:intergenic 55.0%
GAGGTGGTTGGGGTTGTTGA+AGG + chr1_2:57050619-57050638 None:intergenic 55.0%
CTCAACGTCGCTACTCGCAA+TGG + chr1_2:57050911-57050930 None:intergenic 55.0%
GGAAAGCTGCTGGTCAAGCT+TGG - chr1_2:57050965-57050984 Msa0079270:intron 55.0%
GGTTGCGATACTTGGGAGCT+AGG - chr1_2:57051435-57051454 Msa0079270:intron 55.0%
GCGATACTTGGGAGCTAGGA+AGG - chr1_2:57051439-57051458 Msa0079270:intron 55.0%
!! TTGGAGGGGAGCACTTTAGC+AGG - chr1_2:57051683-57051702 Msa0079270:intron 55.0%
GGCTCTTCTGCGGTGATCTT+GGG - chr1_2:57052218-57052237 Msa0079270:intron 55.0%
GGCGTAGTGAGAGGTGGTTG+GGG + chr1_2:57050629-57050648 None:intergenic 60.0%
CGGCGTAGTGAGAGGTGGTT+GGG + chr1_2:57050630-57050649 None:intergenic 60.0%
CTTCCTCCGCCGCCAATTGT+CGG - chr1_2:57050679-57050698 Msa0079270:CDS 60.0%
TAAGCAGCAGGCGGTGGAAC+GGG + chr1_2:57050706-57050725 None:intergenic 60.0%
GTAAGCAGCAGGCGGTGGAA+CGG + chr1_2:57050707-57050726 None:intergenic 60.0%
GGAACGGAGTAAGCAGCAGG+CGG + chr1_2:57050715-57050734 None:intergenic 60.0%
TGCGGAACGGAGTAAGCAGC+AGG + chr1_2:57050718-57050737 None:intergenic 60.0%
GCTGTTCCTCGGAAAGCTGC+TGG - chr1_2:57050955-57050974 Msa0079270:intron 60.0%
GCTTGACCAGCAGCTTTCCG+AGG + chr1_2:57050964-57050983 None:intergenic 60.0%
AGCTGCTGGTCAAGCTTGGG+AGG - chr1_2:57050969-57050988 Msa0079270:intron 60.0%
CGGCTCTTCTGCGGTGATCT+TGG - chr1_2:57052217-57052236 Msa0079270:intron 60.0%
AGCAGCAAGGTCAGCAGGGT+TGG + chr1_2:57053975-57053994 None:intergenic 60.0%
GAGCAGCAGCAAGGTCAGCA+GGG + chr1_2:57053979-57053998 None:intergenic 60.0%
AGAGCAGCAGCAAGGTCAGC+AGG + chr1_2:57053980-57053999 None:intergenic 60.0%
GCGGCGTAGTGAGAGGTGGT+TGG + chr1_2:57050631-57050650 None:intergenic 65.0%
GTAGGGTGCGGCGTAGTGAG+AGG + chr1_2:57050638-57050657 None:intergenic 65.0%
GGAACGGGGCCGACAATTGG+CGG + chr1_2:57050691-57050710 None:intergenic 65.0%
GGTGGAACGGGGCCGACAAT+TGG + chr1_2:57050694-57050713 None:intergenic 65.0%
AAGCAGCAGGCGGTGGAACG+GGG + chr1_2:57050705-57050724 None:intergenic 65.0%
ACGGAGTAAGCAGCAGGCGG+TGG + chr1_2:57050712-57050731 None:intergenic 65.0%
GGGTGCGGCGTAGTGAGAGG+TGG + chr1_2:57050635-57050654 None:intergenic 70.0%
TGGCGGCGGAGGAAGCTGCA+CGG + chr1_2:57050674-57050693 None:intergenic 70.0%
ACGGGGCCGACAATTGGCGG+CGG + chr1_2:57050688-57050707 None:intergenic 70.0%
GGGGGTGGCGACGTAGGGTG+CGG + chr1_2:57050650-57050669 None:intergenic 75.0%
ACGGCGGGGGTGGCGACGTA+GGG + chr1_2:57050655-57050674 None:intergenic 75.0%
AGGAAGCTGCACGGCGGGGG+TGG + chr1_2:57050665-57050684 None:intergenic 75.0%
CGGAGGAAGCTGCACGGCGG+GGG + chr1_2:57050668-57050687 None:intergenic 75.0%
GCGGAGGAAGCTGCACGGCG+GGG + chr1_2:57050669-57050688 None:intergenic 75.0%
GGCGGAGGAAGCTGCACGGC+GGG + chr1_2:57050670-57050689 None:intergenic 75.0%
CGGCGGAGGAAGCTGCACGG+CGG + chr1_2:57050671-57050690 None:intergenic 75.0%
GGGCCGACAATTGGCGGCGG+AGG + chr1_2:57050685-57050704 None:intergenic 75.0%
! CACGGCGGGGGTGGCGACGT+AGG + chr1_2:57050656-57050675 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 57050376 57055354 57050376 ID=Msa0079270;Name=Msa0079270
chr1_2 mRNA 57050376 57055354 57050376 ID=Msa0079270-mRNA-1;Parent=Msa0079270;Name=Msa0079270-mRNA-1;_AED=0.18;_eAED=0.18;_QI=636|1|1|1|0.8|1|6|281|81
chr1_2 exon 57050376 57050710 57050376 ID=Msa0079270-mRNA-1:exon:17993;Parent=Msa0079270-mRNA-1
chr1_2 exon 57050797 57050882 57050797 ID=Msa0079270-mRNA-1:exon:17992;Parent=Msa0079270-mRNA-1
chr1_2 exon 57051717 57051813 57051717 ID=Msa0079270-mRNA-1:exon:17991;Parent=Msa0079270-mRNA-1
chr1_2 exon 57053424 57053521 57053424 ID=Msa0079270-mRNA-1:exon:17990;Parent=Msa0079270-mRNA-1
chr1_2 exon 57054712 57054889 57054712 ID=Msa0079270-mRNA-1:exon:17989;Parent=Msa0079270-mRNA-1
chr1_2 exon 57054986 57055354 57054986 ID=Msa0079270-mRNA-1:exon:17988;Parent=Msa0079270-mRNA-1
chr1_2 five_prime_UTR 57054986 57055354 57054986 ID=Msa0079270-mRNA-1:five_prime_utr;Parent=Msa0079270-mRNA-1
chr1_2 five_prime_UTR 57054712 57054889 57054712 ID=Msa0079270-mRNA-1:five_prime_utr;Parent=Msa0079270-mRNA-1
chr1_2 five_prime_UTR 57053433 57053521 57053433 ID=Msa0079270-mRNA-1:five_prime_utr;Parent=Msa0079270-mRNA-1
chr1_2 CDS 57053424 57053432 57053424 ID=Msa0079270-mRNA-1:cds;Parent=Msa0079270-mRNA-1
chr1_2 CDS 57051717 57051813 57051717 ID=Msa0079270-mRNA-1:cds;Parent=Msa0079270-mRNA-1
chr1_2 CDS 57050797 57050882 57050797 ID=Msa0079270-mRNA-1:cds;Parent=Msa0079270-mRNA-1
chr1_2 CDS 57050657 57050710 57050657 ID=Msa0079270-mRNA-1:cds;Parent=Msa0079270-mRNA-1
chr1_2 three_prime_UTR 57050376 57050656 57050376 ID=Msa0079270-mRNA-1:three_prime_utr;Parent=Msa0079270-mRNA-1
Gene Sequence

>Msa0079270

ATGGCAAGAGTTGTTAGAGATAAGCGAACTGGAAAAACAAAGGGCTATGGATTTATAAGCTTTGCCAACCCTGCTGACCTTGCTGCTGCTCTTAAAGAAATGAATGGTAAGTACGTCGGAAATCGGCCAATAAAACTACGCAAGAGTAAGTGGAGGGAGAGAACTGATTATGATGCATTGGAGAAACAGAAGAACCATATTCAGAAGAAGCCAAAAATGTCAAGAAAGAGTATTCTGCACAAGTGA
Protein sequence

>Msa0079270

MARVVRDKRTGKTKGYGFISFANPADLAAALKEMNGKYVGNRPIKLRKSKWRERTDYDALEKQKNHIQKKPKMSRKSILHK*