AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0172430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0172430 MtrunA17_Chr1g0190671 73.394 109 28 1 1 109 1 108 4.26e-53 163
Msa0172430 MtrunA17_Chr1g0190661 69.725 109 32 1 1 109 1 108 1.50e-51 159
Msa0172430 MtrunA17_Chr1g0190651 68.807 109 33 1 1 109 1 108 4.99e-49 152
Msa0172430 MtrunA17_Chr1g0190641 58.974 78 28 2 10 87 9 82 1.31e-27 98.6
Msa0172430 MtrunA17_Chr7g0274181 55.556 81 35 1 29 109 69 148 7.99e-25 93.2
Msa0172430 MtrunA17_Chr6g0484021 44.444 117 44 6 10 109 31 143 7.64e-21 86.3
Msa0172430 MtrunA17_Chr6g0483971 50.000 72 33 1 10 81 11 79 7.54e-20 82.0
Msa0172430 MtrunA17_Chr6g0484031 43.590 78 37 2 10 87 11 81 7.10e-15 68.9
Msa0172430 MtrunA17_Chr6g0484041 50.000 72 27 3 10 75 23 91 4.66e-14 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0172430 AT3G04720.1 64.062 64 23 0 24 87 71 134 1.34e-26 98.2

Find 48 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATATATAACTTGCTATTT+TGG 0.098729 1_4:-57481850 Msa0172430:three_prime_UTR
ACAACCCTCAGAATATTAAC+TGG 0.317116 1_4:-57483040 Msa0172430:CDS
TCTTATCATCTCTCACATAT+TGG 0.343760 1_4:-57481826 Msa0172430:three_prime_UTR
ACATAGAAGTTTAAGCTTGA+TGG 0.365054 1_4:-57483138 Msa0172430:CDS
TTGTCATGGCGTCAAAAGTA+TGG 0.371251 1_4:-57482966 Msa0172430:CDS
TGCCCCTCAGAAGGGCAAAA+TGG 0.374110 1_4:+57481697 None:intergenic
GTCTCTACCGCGAGGACCCT+GGG 0.394792 1_4:+57482923 None:intergenic
CAGGTGACAAATACTGCAAC+CGG 0.466094 1_4:-57482157 Msa0172430:CDS
CTGCTGGTAACCTTGTCTAT+TGG 0.469652 1_4:+57482051 None:intergenic
AGGACCCTGGGGTCCACAAA+AGG 0.477350 1_4:+57482935 None:intergenic
AGTCTCTACCGCGAGGACCC+TGG 0.482201 1_4:+57482922 None:intergenic
TCTCACTGTTGCCTGAGCTC+CGG 0.483294 1_4:+57482138 None:intergenic
GTCAGAGTGCAAACAACGTA+AGG 0.487660 1_4:-57483079 Msa0172430:CDS
AAATACTGCAACCGGAGCTC+AGG 0.499017 1_4:-57482149 Msa0172430:CDS
TAATATTCTGAGGGTTGTAA+AGG 0.506256 1_4:+57483045 None:intergenic
AAAGAAGTAAATTCGAAGCT+AGG 0.510039 1_4:-57481803 Msa0172430:three_prime_UTR
TATTCTGAGGGTTGTAAAGG+TGG 0.518272 1_4:+57483048 None:intergenic
CCAGTGTATACTGTGCTACA+TGG 0.518274 1_4:-57483004 Msa0172430:CDS
CATGGCGTCAAAAGTATGGC+TGG 0.519495 1_4:-57482962 Msa0172430:CDS
TTACCAGCAGGGTCACCTTA+CGG 0.525799 1_4:-57482038 Msa0172430:three_prime_UTR
TAGTCCCAGTTAATATTCTG+AGG 0.529315 1_4:+57483035 None:intergenic
TTTGACGCCATGACAAGGGC+TGG 0.551508 1_4:+57482973 None:intergenic
TGCCAATGGTGGGTTAGACT+TGG 0.552806 1_4:-57482101 Msa0172430:CDS
CAACCCTCAGAATATTAACT+GGG 0.554793 1_4:-57483039 Msa0172430:CDS
ATGCCAACCAGCCCTTGTCA+TGG 0.561952 1_4:-57482980 Msa0172430:CDS
CAATAGACAAGGTTACCAGC+AGG 0.562787 1_4:-57482050 Msa0172430:three_prime_UTR
AAGAAGAAAATTAATGTCCG+TGG 0.564328 1_4:-57481726 Msa0172430:three_prime_UTR
CTAACCCACCATTGGCACAT+TGG 0.580120 1_4:+57482107 None:intergenic
TAACCGTAAGGTGACCCTGC+TGG 0.587993 1_4:+57482035 None:intergenic
ACGCCATGACAAGGGCTGGT+TGG 0.589508 1_4:+57482977 None:intergenic
ATCCAAGTCTAACCCACCAT+TGG 0.590223 1_4:+57482099 None:intergenic
AGTCCCAGTTAATATTCTGA+GGG 0.592868 1_4:+57483036 None:intergenic
CAAAGACATAGTTAACCGTA+AGG 0.593715 1_4:+57482023 None:intergenic
TCAGGCAACAGTGAGAATAG+TGG 0.607392 1_4:-57482131 Msa0172430:CDS
CAGTGTATACTGTGCTACAT+GGG 0.615919 1_4:-57483003 Msa0172430:CDS
AATAGACAAGGTTACCAGCA+GGG 0.619955 1_4:-57482049 Msa0172430:three_prime_UTR
CAAATTGATACCAATAGACA+AGG 0.622899 1_4:-57482061 Msa0172430:exon
GGGCAAAATGGTAATTTCCA+CGG 0.623626 1_4:+57481709 None:intergenic
GTGGACCAATGTGCCAATGG+TGG 0.630103 1_4:-57482112 Msa0172430:CDS
AATACCATAAATAAAACAAG+CGG 0.643818 1_4:-57481938 Msa0172430:three_prime_UTR
TCTCTACCGCGAGGACCCTG+GGG 0.650500 1_4:+57482924 None:intergenic
ATAGTGGACCAATGTGCCAA+TGG 0.652412 1_4:-57482115 Msa0172430:CDS
TGGACCAATGTGCCAATGGT+GGG 0.652500 1_4:-57482111 Msa0172430:CDS
GTGGGAACGATGTTAGTGAA+TGG 0.656794 1_4:-57483101 Msa0172430:CDS
TCAGAGTGCAAACAACGTAA+GGG 0.659863 1_4:-57483078 Msa0172430:CDS
CCATGTAGCACAGTATACAC+TGG 0.663920 1_4:+57483004 None:intergenic
TCACTAACATCGTTCCCACA+AGG 0.670804 1_4:+57483105 None:intergenic
TGTGGACCCCAGGGTCCTCG+CGG 0.678697 1_4:-57482930 Msa0172430:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGAAAATAATTTATAGTTT+AGG - chr1_4:57482167-57482186 Msa0172430:intron 10.0%
!! TGAAAATAATTTATAGTTTA+GGG - chr1_4:57482168-57482187 Msa0172430:intron 10.0%
!! ATTAAATAATTAAATTAGCA+AGG - chr1_4:57482295-57482314 Msa0172430:intron 10.0%
!! ATGAAAATAATTTATAGTTT+AGG - chr1_4:57482167-57482186 Msa0172430:intron 10.0%
!! TGAAAATAATTTATAGTTTA+GGG - chr1_4:57482168-57482187 Msa0172430:intron 10.0%
!! ATTAAATAATTAAATTAGCA+AGG - chr1_4:57482295-57482314 Msa0172430:intron 10.0%
!! TAAAATTAAATGAGTAAGTA+CGG + chr1_4:57481989-57482008 None:intergenic 15.0%
!!! GATGTAATGTTTTAATATAA+TGG - chr1_4:57482454-57482473 Msa0172430:intron 15.0%
!!! ATATATATAACTTGCTATTT+TGG - chr1_4:57483009-57483028 Msa0172430:CDS 15.0%
!!! TTTTTTTTTTTACTAAAGCA+CGG - chr1_4:57483087-57483106 Msa0172430:CDS 15.0%
!! TAAAATTAAATGAGTAAGTA+CGG + chr1_4:57481989-57482008 None:intergenic 15.0%
!!! GATGTAATGTTTTAATATAA+TGG - chr1_4:57482454-57482473 Msa0172430:intron 15.0%
!!! ATATATATAACTTGCTATTT+TGG - chr1_4:57483009-57483028 Msa0172430:CDS 15.0%
!!! TTTTTTTTTTTACTAAAGCA+CGG - chr1_4:57483087-57483106 Msa0172430:CDS 15.0%
!!! TATTGTTATTCAAGAGTAAA+AGG + chr1_4:57482489-57482508 None:intergenic 20.0%
!!! ACTCTTGAATAACAATATTT+TGG - chr1_4:57482492-57482511 Msa0172430:intron 20.0%
!! GATAGTTGAATTAATATTAG+TGG - chr1_4:57482671-57482690 Msa0172430:intron 20.0%
!! AATACCATAAATAAAACAAG+CGG - chr1_4:57482921-57482940 Msa0172430:intron 20.0%
!!! TATTGTTATTCAAGAGTAAA+AGG + chr1_4:57482489-57482508 None:intergenic 20.0%
!!! ACTCTTGAATAACAATATTT+TGG - chr1_4:57482492-57482511 Msa0172430:intron 20.0%
!! GATAGTTGAATTAATATTAG+TGG - chr1_4:57482671-57482690 Msa0172430:intron 20.0%
!! AATACCATAAATAAAACAAG+CGG - chr1_4:57482921-57482940 Msa0172430:intron 20.0%
! ACGAAATTGTTAAAAAGAGT+TGG - chr1_4:57482077-57482096 Msa0172430:CDS 25.0%
! AACAAATCGAAAACGATTTA+TGG + chr1_4:57482126-57482145 None:intergenic 25.0%
!! TGAATATAAAGATCGTGTTT+TGG + chr1_4:57482259-57482278 None:intergenic 25.0%
! TGATCAATATTAGTTAGTCA+AGG - chr1_4:57482625-57482644 Msa0172430:intron 25.0%
! ACGAAATTGTTAAAAAGAGT+TGG - chr1_4:57482077-57482096 Msa0172430:CDS 25.0%
! AACAAATCGAAAACGATTTA+TGG + chr1_4:57482126-57482145 None:intergenic 25.0%
!! TGAATATAAAGATCGTGTTT+TGG + chr1_4:57482259-57482278 None:intergenic 25.0%
! TGATCAATATTAGTTAGTCA+AGG - chr1_4:57482625-57482644 Msa0172430:intron 25.0%
ACATAGAAGTTTAAGCTTGA+TGG - chr1_4:57481721-57481740 Msa0172430:three_prime_UTR 30.0%
! TAATATTCTGAGGGTTGTAA+AGG + chr1_4:57481817-57481836 None:intergenic 30.0%
CATAGACACGTTTACAATTA+GGG - chr1_4:57482100-57482119 Msa0172430:CDS 30.0%
GTTTCTTTATTGTGAAGATG+TGG - chr1_4:57482322-57482341 Msa0172430:intron 30.0%
TAGCTTCTACTCCATATATT+GGG - chr1_4:57482397-57482416 Msa0172430:intron 30.0%
TCTTTACACTACACTTTATG+TGG - chr1_4:57482423-57482442 Msa0172430:intron 30.0%
TTAATGCGATACAAAAACGA+TGG - chr1_4:57482527-57482546 Msa0172430:intron 30.0%
! AAACACTAAGTTTTTCTGTG+TGG - chr1_4:57482571-57482590 Msa0172430:intron 30.0%
CAAATTGATACCAATAGACA+AGG - chr1_4:57482798-57482817 Msa0172430:intron 30.0%
TCTTATCATCTCTCACATAT+TGG - chr1_4:57483033-57483052 Msa0172430:CDS 30.0%
AAAGAAGTAAATTCGAAGCT+AGG - chr1_4:57483056-57483075 Msa0172430:CDS 30.0%
! CGGACATTAATTTTCTTCTT+TGG + chr1_4:57483133-57483152 None:intergenic 30.0%
AAGAAGAAAATTAATGTCCG+TGG - chr1_4:57483133-57483152 Msa0172430:CDS 30.0%
ACATAGAAGTTTAAGCTTGA+TGG - chr1_4:57481721-57481740 Msa0172430:three_prime_UTR 30.0%
! TAATATTCTGAGGGTTGTAA+AGG + chr1_4:57481817-57481836 None:intergenic 30.0%
CATAGACACGTTTACAATTA+GGG - chr1_4:57482100-57482119 Msa0172430:CDS 30.0%
GTTTCTTTATTGTGAAGATG+TGG - chr1_4:57482322-57482341 Msa0172430:intron 30.0%
TAGCTTCTACTCCATATATT+GGG - chr1_4:57482397-57482416 Msa0172430:intron 30.0%
TCTTTACACTACACTTTATG+TGG - chr1_4:57482423-57482442 Msa0172430:intron 30.0%
TTAATGCGATACAAAAACGA+TGG - chr1_4:57482527-57482546 Msa0172430:intron 30.0%
! AAACACTAAGTTTTTCTGTG+TGG - chr1_4:57482571-57482590 Msa0172430:intron 30.0%
CAAATTGATACCAATAGACA+AGG - chr1_4:57482798-57482817 Msa0172430:intron 30.0%
TCTTATCATCTCTCACATAT+TGG - chr1_4:57483033-57483052 Msa0172430:CDS 30.0%
AAAGAAGTAAATTCGAAGCT+AGG - chr1_4:57483056-57483075 Msa0172430:CDS 30.0%
! CGGACATTAATTTTCTTCTT+TGG + chr1_4:57483133-57483152 None:intergenic 30.0%
AAGAAGAAAATTAATGTCCG+TGG - chr1_4:57483133-57483152 Msa0172430:CDS 30.0%
!!! ATGGTGTTTTGTTTCCTTGT+GGG - chr1_4:57481740-57481759 Msa0172430:three_prime_UTR 35.0%
ACAACCCTCAGAATATTAAC+TGG - chr1_4:57481819-57481838 Msa0172430:three_prime_UTR 35.0%
CAACCCTCAGAATATTAACT+GGG - chr1_4:57481820-57481839 Msa0172430:three_prime_UTR 35.0%
AGTCCCAGTTAATATTCTGA+GGG + chr1_4:57481826-57481845 None:intergenic 35.0%
TAGTCCCAGTTAATATTCTG+AGG + chr1_4:57481827-57481846 None:intergenic 35.0%
GCATAGACACGTTTACAATT+AGG - chr1_4:57482099-57482118 Msa0172430:CDS 35.0%
CTAGCTTCTACTCCATATAT+TGG - chr1_4:57482396-57482415 Msa0172430:intron 35.0%
TGTAAAGACAGCCCAATATA+TGG + chr1_4:57482411-57482430 None:intergenic 35.0%
! TTTTTCTGTGTGGCTTTTTG+TGG - chr1_4:57482581-57482600 Msa0172430:intron 35.0%
! GCTTTTTGTGGACTTGAAAA+TGG - chr1_4:57482593-57482612 Msa0172430:intron 35.0%
! AATATTAGTGGTGATGATGC+AGG - chr1_4:57482683-57482702 Msa0172430:intron 35.0%
CAAAGACATAGTTAACCGTA+AGG + chr1_4:57482839-57482858 None:intergenic 35.0%
!!! AGCACCGCTTGTTTTATTTA+TGG + chr1_4:57482928-57482947 None:intergenic 35.0%
!!! ATGGTGTTTTGTTTCCTTGT+GGG - chr1_4:57481740-57481759 Msa0172430:three_prime_UTR 35.0%
ACAACCCTCAGAATATTAAC+TGG - chr1_4:57481819-57481838 Msa0172430:three_prime_UTR 35.0%
CAACCCTCAGAATATTAACT+GGG - chr1_4:57481820-57481839 Msa0172430:three_prime_UTR 35.0%
AGTCCCAGTTAATATTCTGA+GGG + chr1_4:57481826-57481845 None:intergenic 35.0%
TAGTCCCAGTTAATATTCTG+AGG + chr1_4:57481827-57481846 None:intergenic 35.0%
GCATAGACACGTTTACAATT+AGG - chr1_4:57482099-57482118 Msa0172430:CDS 35.0%
CTAGCTTCTACTCCATATAT+TGG - chr1_4:57482396-57482415 Msa0172430:intron 35.0%
TGTAAAGACAGCCCAATATA+TGG + chr1_4:57482411-57482430 None:intergenic 35.0%
! TTTTTCTGTGTGGCTTTTTG+TGG - chr1_4:57482581-57482600 Msa0172430:intron 35.0%
! GCTTTTTGTGGACTTGAAAA+TGG - chr1_4:57482593-57482612 Msa0172430:intron 35.0%
! AATATTAGTGGTGATGATGC+AGG - chr1_4:57482683-57482702 Msa0172430:intron 35.0%
CAAAGACATAGTTAACCGTA+AGG + chr1_4:57482839-57482858 None:intergenic 35.0%
!!! AGCACCGCTTGTTTTATTTA+TGG + chr1_4:57482928-57482947 None:intergenic 35.0%
!!! GATGGTGTTTTGTTTCCTTG+TGG - chr1_4:57481739-57481758 Msa0172430:three_prime_UTR 40.0%
TCAGAGTGCAAACAACGTAA+GGG - chr1_4:57481781-57481800 Msa0172430:three_prime_UTR 40.0%
! TATTCTGAGGGTTGTAAAGG+TGG + chr1_4:57481814-57481833 None:intergenic 40.0%
CAGTGTATACTGTGCTACAT+GGG - chr1_4:57481856-57481875 Msa0172430:three_prime_UTR 40.0%
! TACTTTTGACGCCATGACAA+GGG + chr1_4:57481893-57481912 None:intergenic 40.0%
! ATACTTTTGACGCCATGACA+AGG + chr1_4:57481894-57481913 None:intergenic 40.0%
TTGTCATGGCGTCAAAAGTA+TGG - chr1_4:57481893-57481912 Msa0172430:three_prime_UTR 40.0%
AATAGACAAGGTTACCAGCA+GGG - chr1_4:57482810-57482829 Msa0172430:intron 40.0%
ACTTCTATGTGTGCTCTTCA+TGG + chr1_4:57481711-57481730 None:intergenic 40.0%
!!! GATGGTGTTTTGTTTCCTTG+TGG - chr1_4:57481739-57481758 Msa0172430:three_prime_UTR 40.0%
TCAGAGTGCAAACAACGTAA+GGG - chr1_4:57481781-57481800 Msa0172430:three_prime_UTR 40.0%
! TATTCTGAGGGTTGTAAAGG+TGG + chr1_4:57481814-57481833 None:intergenic 40.0%
CAGTGTATACTGTGCTACAT+GGG - chr1_4:57481856-57481875 Msa0172430:three_prime_UTR 40.0%
! TACTTTTGACGCCATGACAA+GGG + chr1_4:57481893-57481912 None:intergenic 40.0%
! ATACTTTTGACGCCATGACA+AGG + chr1_4:57481894-57481913 None:intergenic 40.0%
TTGTCATGGCGTCAAAAGTA+TGG - chr1_4:57481893-57481912 Msa0172430:three_prime_UTR 40.0%
AATAGACAAGGTTACCAGCA+GGG - chr1_4:57482810-57482829 Msa0172430:intron 40.0%
TCACTAACATCGTTCCCACA+AGG + chr1_4:57481757-57481776 None:intergenic 45.0%
GTGGGAACGATGTTAGTGAA+TGG - chr1_4:57481758-57481777 Msa0172430:three_prime_UTR 45.0%
GTCAGAGTGCAAACAACGTA+AGG - chr1_4:57481780-57481799 Msa0172430:three_prime_UTR 45.0%
CCATGTAGCACAGTATACAC+TGG + chr1_4:57481858-57481877 None:intergenic 45.0%
CCAGTGTATACTGTGCTACA+TGG - chr1_4:57481855-57481874 Msa0172430:three_prime_UTR 45.0%
CAGGTGACAAATACTGCAAC+CGG - chr1_4:57482702-57482721 Msa0172430:intron 45.0%
TCAGGCAACAGTGAGAATAG+TGG - chr1_4:57482728-57482747 Msa0172430:intron 45.0%
!! ATAGTGGACCAATGTGCCAA+TGG - chr1_4:57482744-57482763 Msa0172430:intron 45.0%
ATCCAAGTCTAACCCACCAT+TGG + chr1_4:57482763-57482782 None:intergenic 45.0%
CTGCTGGTAACCTTGTCTAT+TGG + chr1_4:57482811-57482830 None:intergenic 45.0%
CAATAGACAAGGTTACCAGC+AGG - chr1_4:57482809-57482828 Msa0172430:intron 45.0%
TCACTAACATCGTTCCCACA+AGG + chr1_4:57481757-57481776 None:intergenic 45.0%
GTGGGAACGATGTTAGTGAA+TGG - chr1_4:57481758-57481777 Msa0172430:three_prime_UTR 45.0%
GTCAGAGTGCAAACAACGTA+AGG - chr1_4:57481780-57481799 Msa0172430:three_prime_UTR 45.0%
CCATGTAGCACAGTATACAC+TGG + chr1_4:57481858-57481877 None:intergenic 45.0%
CCAGTGTATACTGTGCTACA+TGG - chr1_4:57481855-57481874 Msa0172430:three_prime_UTR 45.0%
CAGGTGACAAATACTGCAAC+CGG - chr1_4:57482702-57482721 Msa0172430:intron 45.0%
TCAGGCAACAGTGAGAATAG+TGG - chr1_4:57482728-57482747 Msa0172430:intron 45.0%
!! ATAGTGGACCAATGTGCCAA+TGG - chr1_4:57482744-57482763 Msa0172430:intron 45.0%
ATCCAAGTCTAACCCACCAT+TGG + chr1_4:57482763-57482782 None:intergenic 45.0%
CTGCTGGTAACCTTGTCTAT+TGG + chr1_4:57482811-57482830 None:intergenic 45.0%
CAATAGACAAGGTTACCAGC+AGG - chr1_4:57482809-57482828 Msa0172430:intron 45.0%
! CATGGCGTCAAAAGTATGGC+TGG - chr1_4:57481897-57481916 Msa0172430:three_prime_UTR 50.0%
! TATGGCTGGACTGCCTTTTG+TGG - chr1_4:57481911-57481930 Msa0172430:three_prime_UTR 50.0%
AAATACTGCAACCGGAGCTC+AGG - chr1_4:57482710-57482729 Msa0172430:intron 50.0%
TGGACCAATGTGCCAATGGT+GGG - chr1_4:57482748-57482767 Msa0172430:intron 50.0%
CTAACCCACCATTGGCACAT+TGG + chr1_4:57482755-57482774 None:intergenic 50.0%
!! TGCCAATGGTGGGTTAGACT+TGG - chr1_4:57482758-57482777 Msa0172430:intron 50.0%
TTACCAGCAGGGTCACCTTA+CGG - chr1_4:57482821-57482840 Msa0172430:intron 50.0%
! CATGGCGTCAAAAGTATGGC+TGG - chr1_4:57481897-57481916 Msa0172430:three_prime_UTR 50.0%
! TATGGCTGGACTGCCTTTTG+TGG - chr1_4:57481911-57481930 Msa0172430:three_prime_UTR 50.0%
AAATACTGCAACCGGAGCTC+AGG - chr1_4:57482710-57482729 Msa0172430:intron 50.0%
TGGACCAATGTGCCAATGGT+GGG - chr1_4:57482748-57482767 Msa0172430:intron 50.0%
CTAACCCACCATTGGCACAT+TGG + chr1_4:57482755-57482774 None:intergenic 50.0%
!! TGCCAATGGTGGGTTAGACT+TGG - chr1_4:57482758-57482777 Msa0172430:intron 50.0%
TTACCAGCAGGGTCACCTTA+CGG - chr1_4:57482821-57482840 Msa0172430:intron 50.0%
ATGCCAACCAGCCCTTGTCA+TGG - chr1_4:57481879-57481898 Msa0172430:three_prime_UTR 55.0%
TTTGACGCCATGACAAGGGC+TGG + chr1_4:57481889-57481908 None:intergenic 55.0%
! ACTGCCTTTTGTGGACCCCA+GGG - chr1_4:57481920-57481939 Msa0172430:three_prime_UTR 55.0%
ACTCTTGCGGCAAGTGCTTG+AGG - chr1_4:57481957-57481976 Msa0172430:three_prime_UTR 55.0%
CTCTTGCGGCAAGTGCTTGA+GGG - chr1_4:57481958-57481977 Msa0172430:three_prime_UTR 55.0%
TCTCACTGTTGCCTGAGCTC+CGG + chr1_4:57482724-57482743 None:intergenic 55.0%
GTGGACCAATGTGCCAATGG+TGG - chr1_4:57482747-57482766 Msa0172430:intron 55.0%
TAACCGTAAGGTGACCCTGC+TGG + chr1_4:57482827-57482846 None:intergenic 55.0%
ATGCCAACCAGCCCTTGTCA+TGG - chr1_4:57481879-57481898 Msa0172430:three_prime_UTR 55.0%
TTTGACGCCATGACAAGGGC+TGG + chr1_4:57481889-57481908 None:intergenic 55.0%
! ACTGCCTTTTGTGGACCCCA+GGG - chr1_4:57481920-57481939 Msa0172430:three_prime_UTR 55.0%
ACTCTTGCGGCAAGTGCTTG+AGG - chr1_4:57481957-57481976 Msa0172430:three_prime_UTR 55.0%
CTCTTGCGGCAAGTGCTTGA+GGG - chr1_4:57481958-57481977 Msa0172430:three_prime_UTR 55.0%
TCTCACTGTTGCCTGAGCTC+CGG + chr1_4:57482724-57482743 None:intergenic 55.0%
GTGGACCAATGTGCCAATGG+TGG - chr1_4:57482747-57482766 Msa0172430:intron 55.0%
TAACCGTAAGGTGACCCTGC+TGG + chr1_4:57482827-57482846 None:intergenic 55.0%
! ACGCCATGACAAGGGCTGGT+TGG + chr1_4:57481885-57481904 None:intergenic 60.0%
! GACTGCCTTTTGTGGACCCC+AGG - chr1_4:57481919-57481938 Msa0172430:three_prime_UTR 60.0%
AGGACCCTGGGGTCCACAAA+AGG + chr1_4:57481927-57481946 None:intergenic 60.0%
CCTCGCGGTAGAGACTCTTG+CGG - chr1_4:57481944-57481963 Msa0172430:three_prime_UTR 60.0%
! ACGCCATGACAAGGGCTGGT+TGG + chr1_4:57481885-57481904 None:intergenic 60.0%
! GACTGCCTTTTGTGGACCCC+AGG - chr1_4:57481919-57481938 Msa0172430:three_prime_UTR 60.0%
AGGACCCTGGGGTCCACAAA+AGG + chr1_4:57481927-57481946 None:intergenic 60.0%
CCTCGCGGTAGAGACTCTTG+CGG - chr1_4:57481944-57481963 Msa0172430:three_prime_UTR 60.0%
TCTCTACCGCGAGGACCCTG+GGG + chr1_4:57481938-57481957 None:intergenic 65.0%
GTCTCTACCGCGAGGACCCT+GGG + chr1_4:57481939-57481958 None:intergenic 65.0%
AGTCTCTACCGCGAGGACCC+TGG + chr1_4:57481940-57481959 None:intergenic 65.0%
CCGCAAGAGTCTCTACCGCG+AGG + chr1_4:57481947-57481966 None:intergenic 65.0%
TCTCTACCGCGAGGACCCTG+GGG + chr1_4:57481938-57481957 None:intergenic 65.0%
GTCTCTACCGCGAGGACCCT+GGG + chr1_4:57481939-57481958 None:intergenic 65.0%
AGTCTCTACCGCGAGGACCC+TGG + chr1_4:57481940-57481959 None:intergenic 65.0%
CCGCAAGAGTCTCTACCGCG+AGG + chr1_4:57481947-57481966 None:intergenic 65.0%
TGTGGACCCCAGGGTCCTCG+CGG - chr1_4:57481929-57481948 Msa0172430:three_prime_UTR 70.0%
TGTGGACCCCAGGGTCCTCG+CGG - chr1_4:57481929-57481948 Msa0172430:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 57481710 57483171 57481710 ID=Msa0172430;Name=Msa0172430
chr1_4 mRNA 57481710 57483171 57481710 ID=Msa0172430-mRNA-1;Parent=Msa0172430;Name=Msa0172430-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|0|0.5|1|0|0.5|2|366|113
chr1_4 exon 57481710 57482176 57481710 ID=Msa0172430-mRNA-1:exon:17617;Parent=Msa0172430-mRNA-1
chr1_4 exon 57482931 57483171 57482931 ID=Msa0172430-mRNA-1:exon:17616;Parent=Msa0172430-mRNA-1
chr1_4 CDS 57482931 57483171 57482931 ID=Msa0172430-mRNA-1:cds;Parent=Msa0172430-mRNA-1
chr1_4 CDS 57482076 57482176 57482076 ID=Msa0172430-mRNA-1:cds;Parent=Msa0172430-mRNA-1
chr1_4 three_prime_UTR 57481710 57482075 57481710 ID=Msa0172430-mRNA-1:three_prime_utr;Parent=Msa0172430-mRNA-1
Gene Sequence

>Msa0172430

ATGAAGAGCACACATAGAAGTTTAAGCTTGATGGTGTTTTGTTTCCTTGTGGGAACGATGTTAGTGAATGGTCAGAGTGCAAACAACGTAAGGGCAACATACCACCTTTACAACCCTCAGAATATTAACTGGGACTACAACACTGCCAGTGTATACTGTGCTACATGGGATGCCAACCAGCCCTTGTCATGGCGTCAAAAGTATGGCTGGACTGCCTTTTGTGGACCCCAGGGTCCTCGCGGTGACAAATACTGCAACCGGAGCTCAGGCAACAGTGAGAATAGTGGACCAATGTGCCAATGGTGGGTTAGACTTGGATGTGAATGTCTTCAATCAAATTGA
Protein sequence

>Msa0172430

MKSTHRSLSLMVFCFLVGTMLVNGQSANNVRATYHLYNPQNINWDYNTASVYCATWDANQPLSWRQKYGWTAFCGPQGPRGDKYCNRSSGNSENSGPMCQWWVRLGCECLQSN*