Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173050 | AES61445.2 | 89.958 | 239 | 4 | 1 | 1 | 239 | 1 | 219 | 1.91e-152 | 432 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173050 | sp|Q84J70|DI193_ARATH | 56.612 | 242 | 83 | 4 | 1 | 239 | 1 | 223 | 7.53e-87 | 259 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173050 | G7I9F4 | 89.958 | 239 | 4 | 1 | 1 | 239 | 1 | 219 | 9.13e-153 | 432 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0173050 | Msa0542060 | -0.809755 | 1.617748e-50 | -8.615850e-47 |
| Msa0173050 | Msa0645800 | -0.803955 | 2.722549e-49 | -8.615850e-47 |
| Msa0173050 | Msa0685110 | -0.805289 | 1.434086e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173050 | MtrunA17_Chr1g0192501 | 97.101 | 138 | 4 | 0 | 102 | 239 | 1 | 138 | 2.19e-93 | 270 |
| Msa0173050 | MtrunA17_Chr1g0192511 | 98.969 | 97 | 1 | 0 | 1 | 97 | 1 | 97 | 2.48e-69 | 208 |
| Msa0173050 | MtrunA17_Chr7g0271941 | 73.984 | 123 | 30 | 1 | 119 | 239 | 1 | 123 | 1.06e-54 | 171 |
| Msa0173050 | MtrunA17_Chr7g0271931 | 64.602 | 113 | 23 | 4 | 1 | 96 | 1 | 113 | 3.02e-42 | 140 |
| Msa0173050 | MtrunA17_Chr2g0294971 | 58.163 | 98 | 34 | 2 | 1 | 95 | 1 | 94 | 5.77e-28 | 103 |
| Msa0173050 | MtrunA17_Chr7g0269721 | 47.619 | 84 | 44 | 0 | 14 | 97 | 5 | 88 | 1.77e-25 | 96.3 |
| Msa0173050 | MtrunA17_Chr4g0046711 | 46.875 | 96 | 43 | 3 | 7 | 97 | 6 | 98 | 2.55e-24 | 93.2 |
| Msa0173050 | MtrunA17_Chr4g0058391 | 27.193 | 228 | 124 | 7 | 15 | 238 | 11 | 200 | 9.08e-14 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173050 | AT3G05700.1 | 56.612 | 242 | 83 | 4 | 1 | 239 | 1 | 223 | 7.65e-88 | 259 |
| Msa0173050 | AT5G26990.1 | 52.282 | 241 | 94 | 4 | 1 | 239 | 1 | 222 | 6.66e-79 | 237 |
| Msa0173050 | AT3G05700.2 | 58.173 | 208 | 65 | 4 | 1 | 205 | 1 | 189 | 4.16e-77 | 231 |
| Msa0173050 | AT1G56280.1 | 49.561 | 228 | 85 | 4 | 11 | 237 | 1 | 199 | 5.81e-66 | 203 |
| Msa0173050 | AT1G56280.2 | 50.000 | 212 | 75 | 5 | 27 | 237 | 24 | 205 | 2.77e-58 | 184 |
| Msa0173050 | AT5G49230.1 | 45.972 | 211 | 86 | 6 | 27 | 237 | 27 | 209 | 6.46e-54 | 173 |
| Msa0173050 | AT3G06760.1 | 47.465 | 217 | 91 | 5 | 27 | 239 | 27 | 224 | 8.26e-53 | 170 |
| Msa0173050 | AT5G49230.2 | 45.024 | 211 | 83 | 5 | 27 | 237 | 27 | 204 | 9.62e-53 | 169 |
| Msa0173050 | AT3G06760.2 | 43.439 | 221 | 104 | 6 | 27 | 239 | 27 | 234 | 4.90e-38 | 133 |
| Msa0173050 | AT4G02200.1 | 33.333 | 204 | 109 | 4 | 34 | 236 | 32 | 209 | 7.52e-26 | 100 |
| Msa0173050 | AT1G02750.1 | 32.143 | 224 | 121 | 5 | 19 | 238 | 20 | 216 | 7.53e-26 | 100 |
| Msa0173050 | AT4G02200.3 | 31.193 | 218 | 109 | 5 | 34 | 236 | 32 | 223 | 7.33e-22 | 90.5 |
| Msa0173050 | AT4G02200.2 | 31.633 | 196 | 107 | 4 | 34 | 228 | 32 | 201 | 2.71e-21 | 88.6 |
| Msa0173050 | AT1G02750.2 | 32.127 | 221 | 109 | 7 | 19 | 238 | 20 | 200 | 2.92e-20 | 85.9 |
Find 79 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATATGTAGATATGTTTA+TGG | 0.158593 | 1_4:-58250718 | Msa0173050:intron |
| CTGAAAGAGGATTAGGGTTT+TGG | 0.201422 | 1_4:+58251489 | None:intergenic |
| AACCTCATCTGATAATTTCT+TGG | 0.251118 | 1_4:+58249773 | None:intergenic |
| TACATGGAGATCCGCCAAAA+AGG | 0.298414 | 1_4:+58249907 | None:intergenic |
| TCGTCATTTATATCACCTTT+AGG | 0.299231 | 1_4:-58249846 | Msa0173050:CDS |
| TTGTGATCTGAAAGAGGATT+AGG | 0.304223 | 1_4:+58251482 | None:intergenic |
| TCAAAATACTCAGAACAAAA+TGG | 0.307531 | 1_4:+58250645 | None:intergenic |
| ACGACGCGGATGAAGATATA+AGG | 0.313415 | 1_4:-58250683 | Msa0173050:CDS |
| TAAATATACTTCCATGTTGT+AGG | 0.329218 | 1_4:+58250249 | None:intergenic |
| TCATCAAGATGTGATGCTTC+AGG | 0.332282 | 1_4:-58248875 | Msa0173050:three_prime_UTR |
| CAATCAATAATAAGATAAAA+AGG | 0.341792 | 1_4:-58250075 | Msa0173050:intron |
| TTTACCCTTTGTTGTTGTTA+GGG | 0.345934 | 1_4:-58251605 | None:intergenic |
| CAGATGAGGTTGTATCAAAA+AGG | 0.348269 | 1_4:-58249761 | Msa0173050:intron |
| TCATATGTAGATATGTTTAT+GGG | 0.364564 | 1_4:-58250717 | Msa0173050:intron |
| CCCACCCTCAATGCACAAAC+TGG | 0.369022 | 1_4:+58250296 | None:intergenic |
| TGTGATCTGAAAGAGGATTA+GGG | 0.375527 | 1_4:+58251483 | None:intergenic |
| CTGCATGTATTCTCTTGTTA+AGG | 0.382098 | 1_4:+58250013 | None:intergenic |
| CAGTTTGTGCATTGAGGGTG+GGG | 0.399469 | 1_4:-58250295 | Msa0173050:CDS |
| GAGATGCAATCTGCAATCTA+TGG | 0.403146 | 1_4:-58248836 | Msa0173050:three_prime_UTR |
| AAAAGATGTGAGTTTGTTCA+AGG | 0.426089 | 1_4:-58248943 | Msa0173050:CDS |
| AATGACGACAGCAGCGGATC+AGG | 0.429498 | 1_4:+58249861 | None:intergenic |
| CCAGTTTGTGCATTGAGGGT+GGG | 0.436557 | 1_4:-58250296 | Msa0173050:CDS |
| GGCACCAACCATGTCAGTTA+AGG | 0.449654 | 1_4:-58248983 | Msa0173050:CDS |
| ATTCTACACTTTCATTATTG+AGG | 0.450122 | 1_4:-58249959 | Msa0173050:CDS |
| CTCCTTGTCCTTAACTGACA+TGG | 0.453146 | 1_4:+58248975 | None:intergenic |
| TGAAACCATGCTCTATTACT+TGG | 0.470937 | 1_4:-58250043 | Msa0173050:CDS |
| CATCAAGATGTGATGCTTCA+GGG | 0.471749 | 1_4:-58248874 | Msa0173050:three_prime_UTR |
| TCCAGTTTGTGCATTGAGGG+TGG | 0.471839 | 1_4:-58250297 | Msa0173050:CDS |
| AGATGTGATGCTTCAGGGGC+GGG | 0.475467 | 1_4:-58248869 | Msa0173050:three_prime_UTR |
| ATGTCCAGTTTGTGCATTGA+GGG | 0.478451 | 1_4:-58250300 | Msa0173050:CDS |
| AAATATACTTCCATGTTGTA+GGG | 0.478691 | 1_4:+58250250 | None:intergenic |
| TTCACCCTAACAACAACAAA+GGG | 0.483780 | 1_4:+58251601 | None:intergenic |
| AGAAGAAGAAAAGAAGAAGA+AGG | 0.491005 | 1_4:+58251557 | None:intergenic |
| CGACGCGGATGAAGATATAA+GGG | 0.493789 | 1_4:-58250682 | Msa0173050:CDS |
| TACACTTTCATTATTGAGGA+AGG | 0.495459 | 1_4:-58249955 | Msa0173050:CDS |
| GCCGCTCTTCAATCCCGATC+AGG | 0.499368 | 1_4:-58251400 | Msa0173050:intron |
| GAAGAAGAAGGAACCTGATC+GGG | 0.499752 | 1_4:+58251387 | None:intergenic |
| CTTGCAGATTCATTACCTAA+AGG | 0.500062 | 1_4:+58249831 | None:intergenic |
| CCTCTTTCAGATCACAATCA+TGG | 0.517741 | 1_4:-58251476 | Msa0173050:exon |
| TTGAGGAAGGAGCTGAGAGA+AGG | 0.522683 | 1_4:-58249942 | Msa0173050:CDS |
| TCATGGACGGTGATTCCTCT+TGG | 0.522705 | 1_4:-58251459 | Msa0173050:CDS |
| ACATGGTTGGTGCCTCTACA+TGG | 0.523150 | 1_4:+58248992 | None:intergenic |
| AGTTTGTGCATTGAGGGTGG+GGG | 0.526173 | 1_4:-58250294 | Msa0173050:CDS |
| GAGAATACATGCAGCGCAAG+AGG | 0.529554 | 1_4:-58250004 | Msa0173050:CDS |
| AAGTGAGAGAGTGAGAGAGA+AGG | 0.539872 | 1_4:+58251530 | None:intergenic |
| AGAAGAAGAAGGAACCTGAT+CGG | 0.544190 | 1_4:+58251386 | None:intergenic |
| GGCTTGATAACGTCGGGAAG+CGG | 0.546592 | 1_4:+58251420 | None:intergenic |
| CCATGATTGTGATCTGAAAG+AGG | 0.548620 | 1_4:+58251476 | None:intergenic |
| ATTTCTTTAAGCTTTATGAT+CGG | 0.553997 | 1_4:+58248689 | None:intergenic |
| TAAATCGTCATCAAATATTG+TGG | 0.557897 | 1_4:+58248909 | None:intergenic |
| AAAACAAGTTGCAGCAGCGA+AGG | 0.557920 | 1_4:+58248656 | None:intergenic |
| ATCCAAGAAATTATCAGATG+AGG | 0.560831 | 1_4:-58249775 | Msa0173050:CDS |
| AAGAGCGGCTTGATAACGTC+GGG | 0.565722 | 1_4:+58251414 | None:intergenic |
| TATGTCCAGTTTGTGCATTG+AGG | 0.571210 | 1_4:-58250301 | Msa0173050:CDS |
| TTATGCTTCTGATTTCCCGT+AGG | 0.576139 | 1_4:-58248618 | Msa0173050:three_prime_UTR |
| TTCAACCAAGTAATAGAGCA+TGG | 0.578391 | 1_4:+58250038 | None:intergenic |
| GTGCCGGTGCATTTACCTAC+GGG | 0.579318 | 1_4:+58248603 | None:intergenic |
| TTTCACCCTAACAACAACAA+AGG | 0.579874 | 1_4:+58251600 | None:intergenic |
| CGCAAGAGGAAATCACGTAA+AGG | 0.589197 | 1_4:-58249990 | Msa0173050:CDS |
| GGTGCCGGTGCATTTACCTA+CGG | 0.594112 | 1_4:+58248602 | None:intergenic |
| TTGTCCTTAACTGACATGGT+TGG | 0.595748 | 1_4:+58248979 | None:intergenic |
| ATCAAGATGTGATGCTTCAG+GGG | 0.611725 | 1_4:-58248873 | Msa0173050:three_prime_UTR |
| TTGGGTGTTCTTCATCAATG+TGG | 0.616285 | 1_4:+58250604 | None:intergenic |
| CATTGATGAAGAACACCCAA+TGG | 0.620331 | 1_4:-58250601 | Msa0173050:CDS |
| TTAGACGAGGACACTATACA+TGG | 0.625691 | 1_4:+58249891 | None:intergenic |
| TTTGGATTGTGATGATGAGG+AGG | 0.647857 | 1_4:+58251507 | None:intergenic |
| AAGATGTGATGCTTCAGGGG+CGG | 0.652551 | 1_4:-58248870 | Msa0173050:three_prime_UTR |
| AAGAGGAAATCACGTAAAGG+TGG | 0.657544 | 1_4:-58249987 | Msa0173050:CDS |
| ACCTGATCGGGATTGAAGAG+CGG | 0.658265 | 1_4:+58251399 | None:intergenic |
| AGAGAGACGAGAAGACCAAG+AGG | 0.660889 | 1_4:+58251444 | None:intergenic |
| TTTCAGATCACAATCATGGA+CGG | 0.662516 | 1_4:-58251472 | Msa0173050:exon |
| GATATAAATGACGACAGCAG+CGG | 0.665482 | 1_4:+58249855 | None:intergenic |
| TGATGAAGAACACCCAATGG+AGG | 0.674724 | 1_4:-58250598 | Msa0173050:CDS |
| AACCATGTCAGTTAAGGACA+AGG | 0.681006 | 1_4:-58248977 | Msa0173050:CDS |
| GAAGAGCGGCTTGATAACGT+CGG | 0.683571 | 1_4:+58251413 | None:intergenic |
| ATCAGGTGCTGCATTAGACG+AGG | 0.688052 | 1_4:+58249878 | None:intergenic |
| TTTCCCGTAGGTAAATGCAC+CGG | 0.690359 | 1_4:-58248606 | None:intergenic |
| CATGTCAGTTAAGGACAAGG+AGG | 0.702100 | 1_4:-58248974 | Msa0173050:CDS |
| GCTCACATAACCCTACAACA+TGG | 0.721119 | 1_4:-58250260 | Msa0173050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCAATTTTAGATTAATTTT+TGG | + | chr1_4:58248972-58248991 | None:intergenic | 10.0% |
| !! | ATTAGAATTATATATGTAAT+CGG | - | chr1_4:58249091-58249110 | Msa0173050:intron | 10.0% |
| !!! | TTTCATAAATTTTCTAAGAT+AGG | + | chr1_4:58249323-58249342 | None:intergenic | 15.0% |
| !! | TGTAAAAATCATTTAAGAAT+TGG | + | chr1_4:58250023-58250042 | None:intergenic | 15.0% |
| !!! | TATGAAGTTTACTTATTTTA+AGG | - | chr1_4:58250107-58250126 | Msa0173050:intron | 15.0% |
| !! | CAATCAATAATAAGATAAAA+AGG | - | chr1_4:58250131-58250150 | Msa0173050:intron | 15.0% |
| !! | TACATACAAAGTAAATAAAA+TGG | + | chr1_4:58251021-58251040 | None:intergenic | 15.0% |
| !! | TTCATATGTAGATATGTTTA+TGG | - | chr1_4:58249488-58249507 | Msa0173050:intron | 20.0% |
| !! | TCATATGTAGATATGTTTAT+GGG | - | chr1_4:58249489-58249508 | Msa0173050:intron | 20.0% |
| !! | ATATGAAATGTTCAAGAAAT+TGG | - | chr1_4:58250572-58250591 | Msa0173050:intron | 20.0% |
| !! | AACATTTCTTCAAACTTAAA+TGG | - | chr1_4:58250790-58250809 | Msa0173050:intron | 20.0% |
| !! | ATGTTTATGATAGAACATTA+TGG | - | chr1_4:58250901-58250920 | Msa0173050:intron | 20.0% |
| !!! | CTACTTTTTATTTTTTCACT+AGG | + | chr1_4:58251425-58251444 | None:intergenic | 20.0% |
| !!! | ATTTCTTTAAGCTTTATGAT+CGG | + | chr1_4:58251520-58251539 | None:intergenic | 20.0% |
| ! | TTATATATGTAATCGGCAAT+TGG | - | chr1_4:58249098-58249117 | Msa0173050:intron | 25.0% |
| ! | AACAATTTAAATTCCACTGA+TGG | + | chr1_4:58249151-58249170 | None:intergenic | 25.0% |
| ! | TCAGTGGAATTTAAATTGTT+TGG | - | chr1_4:58249151-58249170 | Msa0173050:intron | 25.0% |
| ! | TTAAGCTGTTTATTCCAAAA+GGG | + | chr1_4:58249230-58249249 | None:intergenic | 25.0% |
| ! | ATTAAGCTGTTTATTCCAAA+AGG | + | chr1_4:58249231-58249250 | None:intergenic | 25.0% |
| ! | AAATACTTGCACATAAACAT+AGG | + | chr1_4:58249447-58249466 | None:intergenic | 25.0% |
| ! | TCAAAATACTCAGAACAAAA+TGG | + | chr1_4:58249564-58249583 | None:intergenic | 25.0% |
| !!! | TCTGAGTATTTTGATATTGT+TGG | - | chr1_4:58249570-58249589 | Msa0173050:intron | 25.0% |
| ! | TTTCCCTGTTTATTTCATAT+AGG | - | chr1_4:58249771-58249790 | Msa0173050:CDS | 25.0% |
| ! | TCACCTATATGAAATAAACA+GGG | + | chr1_4:58249777-58249796 | None:intergenic | 25.0% |
| ! | TTCACCTATATGAAATAAAC+AGG | + | chr1_4:58249778-58249797 | None:intergenic | 25.0% |
| ! | AAATATACTTCCATGTTGTA+GGG | + | chr1_4:58249959-58249978 | None:intergenic | 25.0% |
| ! | TAAATATACTTCCATGTTGT+AGG | + | chr1_4:58249960-58249979 | None:intergenic | 25.0% |
| ! | ATTCTACACTTTCATTATTG+AGG | - | chr1_4:58250247-58250266 | Msa0173050:intron | 25.0% |
| ! | TATCACATATCAATTCAGTT+AGG | + | chr1_4:58250501-58250520 | None:intergenic | 25.0% |
| ! | AACTGAATTGATATGTGATA+TGG | - | chr1_4:58250501-58250520 | Msa0173050:intron | 25.0% |
| ! | ACAATATTTAGTATTCTCAC+AGG | + | chr1_4:58250544-58250563 | None:intergenic | 25.0% |
| ! | TTATCTGTGAATTTAGTTAC+AGG | - | chr1_4:58250875-58250894 | Msa0173050:intron | 25.0% |
| ! | TTTCCAATAACATTACACAA+TGG | - | chr1_4:58251140-58251159 | Msa0173050:intron | 25.0% |
| ! | TAAATCGTCATCAAATATTG+TGG | + | chr1_4:58251300-58251319 | None:intergenic | 25.0% |
| !! | AGAAGCATAAAAAGTTCTAA+AGG | + | chr1_4:58251578-58251597 | None:intergenic | 25.0% |
| AGAAGAAGAAAAGAAGAAGA+AGG | + | chr1_4:58248652-58248671 | None:intergenic | 30.0% | |
| GAGCTAGTATCTATATGTAA+AGG | + | chr1_4:58248903-58248922 | None:intergenic | 30.0% | |
| ATATAGATACTAGCTCAGTT+AGG | - | chr1_4:58248907-58248926 | Msa0173050:CDS | 30.0% | |
| !!! | GTGTTTTAGTTGTTGCTAAT+AGG | - | chr1_4:58249061-58249080 | Msa0173050:intron | 30.0% |
| TTATTCCAAAAGGGTTTAAG+TGG | + | chr1_4:58249221-58249240 | None:intergenic | 30.0% | |
| CTCAAATAAGTCAATCCTAA+CGG | - | chr1_4:58249397-58249416 | Msa0173050:intron | 30.0% | |
| TCAAATAAGTCAATCCTAAC+GGG | - | chr1_4:58249398-58249417 | Msa0173050:intron | 30.0% | |
| ACATAAACATAGGAGTAAAG+AGG | + | chr1_4:58249437-58249456 | None:intergenic | 30.0% | |
| TGTTTATGTGCAAGTATTTG+TGG | - | chr1_4:58249448-58249467 | Msa0173050:intron | 30.0% | |
| TATTTGTGGTTATTGATGTG+AGG | - | chr1_4:58249462-58249481 | Msa0173050:intron | 30.0% | |
| ! | CTTACAAGGTTTTCAGTATT+GGG | - | chr1_4:58249688-58249707 | Msa0173050:intron | 30.0% |
| AGGAATGAACAAAAGCTTTA+CGG | + | chr1_4:58249742-58249761 | None:intergenic | 30.0% | |
| AAACAGGGAAATATATGTAG+AGG | + | chr1_4:58249762-58249781 | None:intergenic | 30.0% | |
| ! | ATTATGACATTTTTGTGTGC+AGG | - | chr1_4:58249882-58249901 | Msa0173050:CDS | 30.0% |
| ! | AGAACTTGGTGAGAAAAAAA+AGG | + | chr1_4:58249989-58250008 | None:intergenic | 30.0% |
| ! | TTTTCTCACCAAGTTCTATT+CGG | - | chr1_4:58249992-58250011 | Msa0173050:CDS | 30.0% |
| TACACTTTCATTATTGAGGA+AGG | - | chr1_4:58250251-58250270 | Msa0173050:intron | 30.0% | |
| TCGTCATTTATATCACCTTT+AGG | - | chr1_4:58250360-58250379 | Msa0173050:intron | 30.0% | |
| ATCCAAGAAATTATCAGATG+AGG | - | chr1_4:58250431-58250450 | Msa0173050:intron | 30.0% | |
| AACCTCATCTGATAATTTCT+TGG | + | chr1_4:58250436-58250455 | None:intergenic | 30.0% | |
| GAAATGTTCAAGAAATTGGT+AGG | - | chr1_4:58250576-58250595 | Msa0173050:intron | 30.0% | |
| ! | ACAGTGAAATAAAGCTTTTC+AGG | + | chr1_4:58250686-58250705 | None:intergenic | 30.0% |
| !! | AAGCTTTATTTCACTGTTTC+TGG | - | chr1_4:58250689-58250708 | Msa0173050:CDS | 30.0% |
| AAATGGTCAATTGAATAAGC+TGG | + | chr1_4:58251004-58251023 | None:intergenic | 30.0% | |
| ACTAAATTGATTGATCGTTC+AGG | + | chr1_4:58251078-58251097 | None:intergenic | 30.0% | |
| ATGCCATTGTGTAATGTTAT+TGG | + | chr1_4:58251146-58251165 | None:intergenic | 30.0% | |
| ! | AAAAGATGTGAGTTTGTTCA+AGG | - | chr1_4:58251263-58251282 | Msa0173050:intron | 30.0% |
| TGTGATCTGAAAGAGGATTA+GGG | + | chr1_4:58248726-58248745 | None:intergenic | 35.0% | |
| TTGTGATCTGAAAGAGGATT+AGG | + | chr1_4:58248727-58248746 | None:intergenic | 35.0% | |
| TTTCAGATCACAATCATGGA+CGG | - | chr1_4:58248734-58248753 | Msa0173050:three_prime_UTR | 35.0% | |
| TTGAGCTAGAGAGAGAAATT+GGG | + | chr1_4:58248859-58248878 | None:intergenic | 35.0% | |
| ATTGAGCTAGAGAGAGAAAT+TGG | + | chr1_4:58248860-58248879 | None:intergenic | 35.0% | |
| AGATTATTGAGATCCATCAG+TGG | - | chr1_4:58249135-58249154 | Msa0173050:intron | 35.0% | |
| ! | TTGTACCACTTAAACCCTTT+TGG | - | chr1_4:58249213-58249232 | Msa0173050:intron | 35.0% |
| CTGGTTGGAAAAACAACATA+AGG | + | chr1_4:58249668-58249687 | None:intergenic | 35.0% | |
| ATACTGAAAACCTTGTAAGC+TGG | + | chr1_4:58249687-58249706 | None:intergenic | 35.0% | |
| ! | GCTTACAAGGTTTTCAGTAT+TGG | - | chr1_4:58249687-58249706 | Msa0173050:intron | 35.0% |
| TGAAACCATGCTCTATTACT+TGG | - | chr1_4:58250163-58250182 | Msa0173050:intron | 35.0% | |
| TTCAACCAAGTAATAGAGCA+TGG | + | chr1_4:58250171-58250190 | None:intergenic | 35.0% | |
| CTGCATGTATTCTCTTGTTA+AGG | + | chr1_4:58250196-58250215 | None:intergenic | 35.0% | |
| ! | GGAAATTTGCAATCCCTTTT+TGG | - | chr1_4:58250285-58250304 | Msa0173050:CDS | 35.0% |
| ! | AATTTGCAATCCCTTTTTGG+CGG | - | chr1_4:58250288-58250307 | Msa0173050:CDS | 35.0% |
| CTTGCAGATTCATTACCTAA+AGG | + | chr1_4:58250378-58250397 | None:intergenic | 35.0% | |
| CAGATGAGGTTGTATCAAAA+AGG | - | chr1_4:58250445-58250464 | Msa0173050:intron | 35.0% | |
| CTCACAGGAAAAACAATGAT+GGG | + | chr1_4:58250529-58250548 | None:intergenic | 35.0% | |
| TCTCACAGGAAAAACAATGA+TGG | + | chr1_4:58250530-58250549 | None:intergenic | 35.0% | |
| TGGTACTAGTGTTTGAAAAC+AGG | - | chr1_4:58250709-58250728 | Msa0173050:CDS | 35.0% | |
| TTAAACATGCCAACATCATG+CGG | + | chr1_4:58250854-58250873 | None:intergenic | 35.0% | |
| TGTAATTTGATCCATGTAGC+CGG | - | chr1_4:58250924-58250943 | Msa0173050:intron | 35.0% | |
| ! | TAAGCCTTATCCCACTAAAT+GGG | + | chr1_4:58250951-58250970 | None:intergenic | 35.0% |
| !! | TAGGTGTTGTTGTTGTTAGT+TGG | - | chr1_4:58250969-58250988 | Msa0173050:intron | 35.0% |
| GAAAGGCTACAAATACAATC+AGG | + | chr1_4:58251054-58251073 | None:intergenic | 35.0% | |
| CACAGACAATATTTGCAACA+AGG | + | chr1_4:58251102-58251121 | None:intergenic | 35.0% | |
| ! | TTTTCTTTTCAGCCATGTAG+AGG | - | chr1_4:58251202-58251221 | Msa0173050:intron | 35.0% |
| ! | TTTGGATTGTGATGATGAGG+AGG | + | chr1_4:58248702-58248721 | None:intergenic | 40.0% |
| !!! | GGTTTTGGATTGTGATGATG+AGG | + | chr1_4:58248705-58248724 | None:intergenic | 40.0% |
| ! | CTGAAAGAGGATTAGGGTTT+TGG | + | chr1_4:58248720-58248739 | None:intergenic | 40.0% |
| CCATGATTGTGATCTGAAAG+AGG | + | chr1_4:58248733-58248752 | None:intergenic | 40.0% | |
| CCTCTTTCAGATCACAATCA+TGG | - | chr1_4:58248730-58248749 | Msa0173050:three_prime_UTR | 40.0% | |
| AGAAGAAGAAGGAACCTGAT+CGG | + | chr1_4:58248823-58248842 | None:intergenic | 40.0% | |
| AAAAAGGGGAGAGAAGAAGA+AGG | + | chr1_4:58248834-58248853 | None:intergenic | 40.0% | |
| AGAGAAATTGGGGGAAAAAG+GGG | + | chr1_4:58248848-58248867 | None:intergenic | 40.0% | |
| GAGAGAAATTGGGGGAAAAA+GGG | + | chr1_4:58248849-58248868 | None:intergenic | 40.0% | |
| AGAGAGAAATTGGGGGAAAA+AGG | + | chr1_4:58248850-58248869 | None:intergenic | 40.0% | |
| TGAGCTAGAGAGAGAAATTG+GGG | + | chr1_4:58248858-58248877 | None:intergenic | 40.0% | |
| GCAAATAATCAGAACCCGTT+AGG | + | chr1_4:58249415-58249434 | None:intergenic | 40.0% | |
| TTGGGTGTTCTTCATCAATG+TGG | + | chr1_4:58249605-58249624 | None:intergenic | 40.0% | |
| CATTGATGAAGAACACCCAA+TGG | - | chr1_4:58249605-58249624 | Msa0173050:intron | 40.0% | |
| ACCCAATGGAGGCAAAAAAT+GGG | - | chr1_4:58249619-58249638 | Msa0173050:intron | 40.0% | |
| ! | GTTTTTCCAACCAGCTTACA+AGG | - | chr1_4:58249674-58249693 | Msa0173050:intron | 40.0% |
| TGAAAACCTTGTAAGCTGGT+TGG | + | chr1_4:58249683-58249702 | None:intergenic | 40.0% | |
| TATGTCCAGTTTGTGCATTG+AGG | - | chr1_4:58249905-58249924 | Msa0173050:CDS | 40.0% | |
| ATGTCCAGTTTGTGCATTGA+GGG | - | chr1_4:58249906-58249925 | Msa0173050:CDS | 40.0% | |
| AAGAGGAAATCACGTAAAGG+TGG | - | chr1_4:58250219-58250238 | Msa0173050:intron | 40.0% | |
| TTAGACGAGGACACTATACA+TGG | + | chr1_4:58250318-58250337 | None:intergenic | 40.0% | |
| GATATAAATGACGACAGCAG+CGG | + | chr1_4:58250354-58250373 | None:intergenic | 40.0% | |
| GTGCGACAGAAATGATAAGT+AGG | + | chr1_4:58250655-58250674 | None:intergenic | 40.0% | |
| ! | CGCGAAACATTTGACAGTTT+TGG | - | chr1_4:58250736-58250755 | Msa0173050:intron | 40.0% |
| ! | AAGCCTTATCCCACTAAATG+GGG | + | chr1_4:58250950-58250969 | None:intergenic | 40.0% |
| ! | CTAAGCCTTATCCCACTAAA+TGG | + | chr1_4:58250952-58250971 | None:intergenic | 40.0% |
| CATTTAGTGGGATAAGGCTT+AGG | - | chr1_4:58250950-58250969 | Msa0173050:intron | 40.0% | |
| TGATTGATCGTTCAGGTGAA+AGG | + | chr1_4:58251071-58251090 | None:intergenic | 40.0% | |
| ATATTGTCTGTGCCTTGCTA+AGG | - | chr1_4:58251110-58251129 | Msa0173050:intron | 40.0% | |
| TATTGTCTGTGCCTTGCTAA+GGG | - | chr1_4:58251111-58251130 | Msa0173050:intron | 40.0% | |
| GGAAAATTATGCCCTTAGCA+AGG | + | chr1_4:58251125-58251144 | None:intergenic | 40.0% | |
| GCATGAGTTCTATTGTCAAC+TGG | - | chr1_4:58251162-58251181 | Msa0173050:intron | 40.0% | |
| TTGTCCTTAACTGACATGGT+TGG | + | chr1_4:58251230-58251249 | None:intergenic | 40.0% | |
| AACCATGTCAGTTAAGGACA+AGG | - | chr1_4:58251229-58251248 | Msa0173050:intron | 40.0% | |
| TCATCAAGATGTGATGCTTC+AGG | - | chr1_4:58251331-58251350 | Msa0173050:intron | 40.0% | |
| CATCAAGATGTGATGCTTCA+GGG | - | chr1_4:58251332-58251351 | Msa0173050:intron | 40.0% | |
| ATCAAGATGTGATGCTTCAG+GGG | - | chr1_4:58251333-58251352 | Msa0173050:intron | 40.0% | |
| GAGATGCAATCTGCAATCTA+TGG | - | chr1_4:58251370-58251389 | Msa0173050:intron | 40.0% | |
| TTATGCTTCTGATTTCCCGT+AGG | - | chr1_4:58251588-58251607 | Msa0173050:five_prime_UTR | 40.0% | |
| AAGTGAGAGAGTGAGAGAGA+AGG | + | chr1_4:58248679-58248698 | None:intergenic | 45.0% | |
| GAAGAAGAAGGAACCTGATC+GGG | + | chr1_4:58248822-58248841 | None:intergenic | 45.0% | |
| GAGCTAGAGAGAGAAATTGG+GGG | + | chr1_4:58248857-58248876 | None:intergenic | 45.0% | |
| ACGACGCGGATGAAGATATA+AGG | - | chr1_4:58249523-58249542 | Msa0173050:intron | 45.0% | |
| CGACGCGGATGAAGATATAA+GGG | - | chr1_4:58249524-58249543 | Msa0173050:intron | 45.0% | |
| TGATGAAGAACACCCAATGG+AGG | - | chr1_4:58249608-58249627 | Msa0173050:intron | 45.0% | |
| CACCCAATGGAGGCAAAAAA+TGG | - | chr1_4:58249618-58249637 | Msa0173050:intron | 45.0% | |
| !!! | CCCCATTTTTTGCCTCCATT+GGG | + | chr1_4:58249623-58249642 | None:intergenic | 45.0% |
| CCCAATGGAGGCAAAAAATG+GGG | - | chr1_4:58249620-58249639 | Msa0173050:intron | 45.0% | |
| !!! | ACCCCATTTTTTGCCTCCAT+TGG | + | chr1_4:58249624-58249643 | None:intergenic | 45.0% |
| GCTCACATAACCCTACAACA+TGG | - | chr1_4:58249946-58249965 | Msa0173050:CDS | 45.0% | |
| TGGCTGAACCGAATAGAACT+TGG | + | chr1_4:58250003-58250022 | None:intergenic | 45.0% | |
| CGCAAGAGGAAATCACGTAA+AGG | - | chr1_4:58250216-58250235 | Msa0173050:intron | 45.0% | |
| ACATGGAGATCCGCCAAAAA+GGG | + | chr1_4:58250301-58250320 | None:intergenic | 45.0% | |
| TACATGGAGATCCGCCAAAA+AGG | + | chr1_4:58250302-58250321 | None:intergenic | 45.0% | |
| ! | ATGCGGTTGGTACTAATAGC+GGG | + | chr1_4:58250837-58250856 | None:intergenic | 45.0% |
| ! | CATGCGGTTGGTACTAATAG+CGG | + | chr1_4:58250838-58250857 | None:intergenic | 45.0% |
| TAGTACCAACCGCATGATGT+TGG | - | chr1_4:58250842-58250861 | Msa0173050:intron | 45.0% | |
| CTCCTTGTCCTTAACTGACA+TGG | + | chr1_4:58251234-58251253 | None:intergenic | 45.0% | |
| CATGTCAGTTAAGGACAAGG+AGG | - | chr1_4:58251232-58251251 | Msa0173050:intron | 45.0% | |
| AAAACAAGTTGCAGCAGCGA+AGG | + | chr1_4:58251553-58251572 | None:intergenic | 45.0% | |
| TCATGGACGGTGATTCCTCT+TGG | - | chr1_4:58248747-58248766 | Msa0173050:three_prime_UTR | 50.0% | |
| AGAGAGACGAGAAGACCAAG+AGG | + | chr1_4:58248765-58248784 | None:intergenic | 50.0% | |
| !! | AAGAGCGGCTTGATAACGTC+GGG | + | chr1_4:58248795-58248814 | None:intergenic | 50.0% |
| !! | GAAGAGCGGCTTGATAACGT+CGG | + | chr1_4:58248796-58248815 | None:intergenic | 50.0% |
| ACCTGATCGGGATTGAAGAG+CGG | + | chr1_4:58248810-58248829 | None:intergenic | 50.0% | |
| !! | GGGTTTTGATGAGAACGACG+CGG | - | chr1_4:58249509-58249528 | Msa0173050:intron | 50.0% |
| TCCAGTTTGTGCATTGAGGG+TGG | - | chr1_4:58249909-58249928 | Msa0173050:CDS | 50.0% | |
| CCAGTTTGTGCATTGAGGGT+GGG | - | chr1_4:58249910-58249929 | Msa0173050:CDS | 50.0% | |
| CAGTTTGTGCATTGAGGGTG+GGG | - | chr1_4:58249911-58249930 | Msa0173050:CDS | 50.0% | |
| AGTTTGTGCATTGAGGGTGG+GGG | - | chr1_4:58249912-58249931 | Msa0173050:CDS | 50.0% | |
| !! | ATTGAGGGTGGGGGTTGATA+TGG | - | chr1_4:58249921-58249940 | Msa0173050:CDS | 50.0% |
| GAGAATACATGCAGCGCAAG+AGG | - | chr1_4:58250202-58250221 | Msa0173050:intron | 50.0% | |
| TTGAGGAAGGAGCTGAGAGA+AGG | - | chr1_4:58250264-58250283 | Msa0173050:CDS | 50.0% | |
| ! | ATCAGGTGCTGCATTAGACG+AGG | + | chr1_4:58250331-58250350 | None:intergenic | 50.0% |
| ACATGCCAACATCATGCGGT+TGG | + | chr1_4:58250850-58250869 | None:intergenic | 50.0% | |
| CTTATCCCACTAAATGGGGC+CGG | + | chr1_4:58250946-58250965 | None:intergenic | 50.0% | |
| ! | ACATGGTTGGTGCCTCTACA+TGG | + | chr1_4:58251217-58251236 | None:intergenic | 50.0% |
| GGCACCAACCATGTCAGTTA+AGG | - | chr1_4:58251223-58251242 | Msa0173050:intron | 50.0% | |
| AAGATGTGATGCTTCAGGGG+CGG | - | chr1_4:58251336-58251355 | Msa0173050:intron | 50.0% | |
| !! | GGCTTGATAACGTCGGGAAG+CGG | + | chr1_4:58248789-58248808 | None:intergenic | 55.0% |
| CCCACCCTCAATGCACAAAC+TGG | + | chr1_4:58249913-58249932 | None:intergenic | 55.0% | |
| AATGACGACAGCAGCGGATC+AGG | + | chr1_4:58250348-58250367 | None:intergenic | 55.0% | |
| ACTAAATGGGGCCGGCTACA+TGG | + | chr1_4:58250938-58250957 | None:intergenic | 55.0% | |
| ATGTAGCCGGCCCCATTTAG+TGG | - | chr1_4:58250937-58250956 | Msa0173050:intron | 55.0% | |
| TGTAGCCGGCCCCATTTAGT+GGG | - | chr1_4:58250938-58250957 | Msa0173050:intron | 55.0% | |
| CGGCCCCATTTAGTGGGATA+AGG | - | chr1_4:58250944-58250963 | Msa0173050:intron | 55.0% | |
| AGATGTGATGCTTCAGGGGC+GGG | - | chr1_4:58251337-58251356 | Msa0173050:intron | 55.0% | |
| GCCGCTCTTCAATCCCGATC+AGG | - | chr1_4:58248806-58248825 | Msa0173050:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 58248607 | 58251621 | 58248607 | ID=Msa0173050;Name=Msa0173050 |
| chr1_4 | mRNA | 58248607 | 58251621 | 58248607 | ID=Msa0173050-mRNA-1;Parent=Msa0173050;Name=Msa0173050-mRNA-1;_AED=0.10;_eAED=0.10;_QI=142|0.75|0.6|1|1|1|5|299|239 |
| chr1_4 | exon | 58248607 | 58249014 | 58248607 | ID=Msa0173050-mRNA-1:exon:17987;Parent=Msa0173050-mRNA-1 |
| chr1_4 | exon | 58249762 | 58250083 | 58249762 | ID=Msa0173050-mRNA-1:exon:17986;Parent=Msa0173050-mRNA-1 |
| chr1_4 | exon | 58250258 | 58250324 | 58250258 | ID=Msa0173050-mRNA-1:exon:17985;Parent=Msa0173050-mRNA-1 |
| chr1_4 | exon | 58250587 | 58250729 | 58250587 | ID=Msa0173050-mRNA-1:exon:17984;Parent=Msa0173050-mRNA-1 |
| chr1_4 | exon | 58251401 | 58251621 | 58251401 | ID=Msa0173050-mRNA-1:exon:17983;Parent=Msa0173050-mRNA-1 |
| chr1_4 | five_prime_UTR | 58251480 | 58251621 | 58251480 | ID=Msa0173050-mRNA-1:five_prime_utr;Parent=Msa0173050-mRNA-1 |
| chr1_4 | CDS | 58251401 | 58251479 | 58251401 | ID=Msa0173050-mRNA-1:cds;Parent=Msa0173050-mRNA-1 |
| chr1_4 | CDS | 58250587 | 58250729 | 58250587 | ID=Msa0173050-mRNA-1:cds;Parent=Msa0173050-mRNA-1 |
| chr1_4 | CDS | 58250258 | 58250324 | 58250258 | ID=Msa0173050-mRNA-1:cds;Parent=Msa0173050-mRNA-1 |
| chr1_4 | CDS | 58249762 | 58250083 | 58249762 | ID=Msa0173050-mRNA-1:cds;Parent=Msa0173050-mRNA-1 |
| chr1_4 | CDS | 58248906 | 58249014 | 58248906 | ID=Msa0173050-mRNA-1:cds;Parent=Msa0173050-mRNA-1 |
| chr1_4 | three_prime_UTR | 58248607 | 58248905 | 58248607 | ID=Msa0173050-mRNA-1:three_prime_utr;Parent=Msa0173050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
