Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685110 | XP_003606829.2 | 97.817 | 229 | 5 | 0 | 1 | 229 | 1 | 229 | 6.76e-161 | 454 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685110 | sp|O22870|FK163_ARATH | 68.122 | 229 | 67 | 2 | 1 | 229 | 1 | 223 | 8.55e-100 | 292 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685110 | G7JEW8 | 97.817 | 229 | 5 | 0 | 1 | 229 | 1 | 229 | 3.23e-161 | 454 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027250 | Msa0685110 | 0.881024 | 3.384133e-70 | -8.615850e-47 |
| Msa0075160 | Msa0685110 | 0.885816 | 5.868251e-72 | -8.615850e-47 |
| Msa0645800 | Msa0685110 | 0.991307 | 5.827817e-187 | -8.615850e-47 |
| Msa0654410 | Msa0685110 | 0.831457 | 1.651167e-55 | -8.615850e-47 |
| Msa0654490 | Msa0685110 | 0.804028 | 2.629194e-49 | -8.615850e-47 |
| Msa0685110 | Msa0685500 | 0.983238 | 3.364677e-157 | -8.615850e-47 |
| Msa0685110 | Msa0719900 | 0.863913 | 1.772939e-64 | -8.615850e-47 |
| Msa0685110 | Msa0784780 | 0.802863 | 4.584719e-49 | -8.615850e-47 |
| Msa0685110 | Msa0804690 | 0.850065 | 2.160883e-60 | -8.615850e-47 |
| Msa0685110 | Msa0858250 | 0.812829 | 3.482155e-51 | -8.615850e-47 |
| Msa0685110 | Msa0882480 | 0.809663 | 1.692896e-50 | -8.615850e-47 |
| Msa0685110 | Msa0922100 | 0.881743 | 1.862781e-70 | -8.615850e-47 |
| Msa0685110 | Msa0960880 | 0.825896 | 3.650915e-54 | -8.615850e-47 |
| Msa0685110 | Msa0994250 | 0.877154 | 7.888609e-69 | -8.615850e-47 |
| Msa0685110 | Msa1163190 | 0.886621 | 2.916387e-72 | -8.615850e-47 |
| Msa0685110 | Msa1173800 | -0.872749 | 2.503228e-67 | -8.615850e-47 |
| Msa0685110 | Msa1238310 | -0.848503 | 5.880033e-60 | -8.615850e-47 |
| Msa0123000 | Msa0685110 | 0.875360 | 3.276890e-68 | -8.615850e-47 |
| Msa0126000 | Msa0685110 | 0.837786 | 4.232135e-57 | -8.615850e-47 |
| Msa0167500 | Msa0685110 | 0.898419 | 5.405354e-77 | -8.615850e-47 |
| Msa0168410 | Msa0685110 | 0.843680 | 1.207165e-58 | -8.615850e-47 |
| Msa0173050 | Msa0685110 | -0.805289 | 1.434086e-49 | -8.615850e-47 |
| Msa0386280 | Msa0685110 | 0.816158 | 6.387402e-52 | -8.615850e-47 |
| Msa0299530 | Msa0685110 | 0.837290 | 5.671613e-57 | -8.615850e-47 |
| Msa0542060 | Msa0685110 | 0.995896 | 4.356805e-221 | -8.615850e-47 |
| Msa0559650 | Msa0685110 | 0.810499 | 1.118453e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685110 | MtrunA17_Chr4g0033841 | 97.817 | 229 | 5 | 0 | 1 | 229 | 1 | 229 | 6.22e-165 | 454 |
| Msa0685110 | MtrunA17_Chr8g0382711 | 27.568 | 185 | 117 | 4 | 41 | 218 | 29 | 203 | 1.14e-17 | 78.6 |
| Msa0685110 | MtrunA17_Chr4g0052911 | 33.918 | 171 | 92 | 5 | 55 | 218 | 80 | 236 | 3.16e-16 | 75.1 |
| Msa0685110 | MtrunA17_Chr8g0377771 | 40.367 | 109 | 60 | 3 | 111 | 218 | 36 | 140 | 3.77e-16 | 77.0 |
| Msa0685110 | MtrunA17_Chr8g0335211 | 40.449 | 89 | 53 | 0 | 108 | 196 | 95 | 183 | 7.14e-15 | 70.9 |
| Msa0685110 | MtrunA17_Chr8g0339141 | 40.860 | 93 | 51 | 2 | 126 | 218 | 54 | 142 | 7.19e-14 | 70.1 |
| Msa0685110 | MtrunA17_Chr8g0339171 | 38.000 | 100 | 58 | 2 | 130 | 229 | 50 | 145 | 4.63e-13 | 64.7 |
| Msa0685110 | MtrunA17_Chr5g0396231 | 40.678 | 118 | 55 | 5 | 112 | 223 | 393 | 501 | 1.44e-12 | 66.2 |
| Msa0685110 | MtrunA17_Chr7g0255551 | 36.559 | 93 | 55 | 2 | 126 | 218 | 35 | 123 | 8.04e-12 | 64.3 |
| Msa0685110 | MtrunA17_Chr7g0234801 | 36.735 | 98 | 57 | 3 | 122 | 218 | 43 | 136 | 3.79e-11 | 62.0 |
| Msa0685110 | MtrunA17_Chr7g0214751 | 35.780 | 109 | 58 | 4 | 108 | 205 | 97 | 204 | 6.57e-11 | 60.5 |
| Msa0685110 | MtrunA17_Chr1g0179681 | 37.815 | 119 | 58 | 5 | 109 | 218 | 129 | 240 | 9.33e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685110 | AT2G43560.1 | 68.122 | 229 | 67 | 2 | 1 | 229 | 1 | 223 | 8.70e-101 | 292 |
| Msa0685110 | AT2G43560.2 | 82.424 | 165 | 29 | 0 | 65 | 229 | 3 | 167 | 1.08e-93 | 272 |
| Msa0685110 | AT5G45680.1 | 37.500 | 128 | 71 | 3 | 101 | 221 | 80 | 205 | 9.54e-18 | 79.0 |
| Msa0685110 | AT4G39710.1 | 37.190 | 121 | 68 | 3 | 111 | 223 | 93 | 213 | 2.93e-16 | 75.1 |
| Msa0685110 | AT4G39710.3 | 37.190 | 121 | 68 | 3 | 111 | 223 | 93 | 213 | 2.93e-16 | 75.1 |
| Msa0685110 | AT5G48580.1 | 40.449 | 89 | 49 | 2 | 130 | 218 | 52 | 136 | 4.65e-14 | 68.2 |
| Msa0685110 | AT3G60370.1 | 36.937 | 111 | 69 | 1 | 87 | 196 | 94 | 204 | 5.16e-14 | 69.3 |
| Msa0685110 | AT3G25220.1 | 39.362 | 94 | 53 | 2 | 130 | 223 | 52 | 141 | 7.09e-14 | 67.4 |
| Msa0685110 | AT3G60370.2 | 36.937 | 111 | 69 | 1 | 87 | 196 | 123 | 233 | 7.74e-14 | 69.3 |
| Msa0685110 | AT5G05420.1 | 43.333 | 90 | 44 | 3 | 130 | 218 | 56 | 139 | 3.07e-13 | 65.5 |
| Msa0685110 | AT3G25230.1 | 36.697 | 109 | 64 | 3 | 111 | 218 | 37 | 141 | 4.55e-12 | 65.5 |
| Msa0685110 | AT3G25230.2 | 36.697 | 109 | 64 | 3 | 111 | 218 | 37 | 141 | 5.32e-12 | 65.1 |
| Msa0685110 | AT5G48570.1 | 36.283 | 113 | 67 | 3 | 107 | 218 | 41 | 149 | 2.96e-11 | 62.8 |
| Msa0685110 | AT4G25340.1 | 38.182 | 110 | 60 | 5 | 112 | 218 | 369 | 473 | 3.19e-11 | 62.8 |
Find 85 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTTCTCTGCTTATTATTA+TGG | 0.134912 | 4_4:-49156260 | None:intergenic |
| TTCAATTTCCATACCTAAAA+TGG | 0.140163 | 4_4:+49156133 | Msa0685110:three_prime_UTR |
| GGAGCCACCCTTGGTCTTCC+TGG | 0.209095 | 4_4:-49155857 | None:intergenic |
| CAAGTTTCATCACATAATTT+TGG | 0.254636 | 4_4:-49153752 | None:intergenic |
| GTGCAGAATTAAGGCCTTTA+GGG | 0.275774 | 4_4:-49155835 | None:intergenic |
| CATTCATTTGATGCTGCTAA+TGG | 0.284118 | 4_4:+49153704 | Msa0685110:CDS |
| GGTGCAGAATTAAGGCCTTT+AGG | 0.289156 | 4_4:-49155836 | None:intergenic |
| GTCTTCCTGGTGCAGAATTA+AGG | 0.291862 | 4_4:-49155844 | None:intergenic |
| CAAACTAGACAAACTAGATT+TGG | 0.295021 | 4_4:+49153295 | None:intergenic |
| CTTTATTCTACCCGATCTTT+TGG | 0.311380 | 4_4:+49156217 | Msa0685110:three_prime_UTR |
| AATTCACGTAGAGACTTTCT+TGG | 0.312447 | 4_4:+49153650 | Msa0685110:CDS |
| ATGAGATATCAGGTGATAAA+AGG | 0.326010 | 4_4:+49155465 | Msa0685110:intron |
| AGTAGTATTTGATGTAAGTT+TGG | 0.332631 | 4_4:+49155889 | Msa0685110:CDS |
| TAGTCCACCAGTTGGATATC+AGG | 0.360762 | 4_4:+49154386 | Msa0685110:CDS |
| AAGAAAGTCTCTACGTGAAT+TGG | 0.368565 | 4_4:-49153648 | None:intergenic |
| CATAATAATAAGCAGAGAAC+AGG | 0.368619 | 4_4:+49156261 | Msa0685110:three_prime_UTR |
| GACTTTCTTGGATTAGCATT+AGG | 0.374464 | 4_4:+49153662 | Msa0685110:CDS |
| CAATACAAGGATATTAAAGT+TGG | 0.375129 | 4_4:+49154354 | Msa0685110:CDS |
| TCAAATACTACTGGACTGTT+TGG | 0.387721 | 4_4:-49155878 | None:intergenic |
| CATCTGGACAAATATTTGAT+AGG | 0.389186 | 4_4:+49154931 | Msa0685110:CDS |
| GTGATGGTGATAAATTGAAT+TGG | 0.399389 | 4_4:-49155986 | None:intergenic |
| TTCTCAACAGAAATGCTTTG+AGG | 0.406961 | 4_4:-49153554 | None:intergenic |
| CTCCTACTTTCATGCTCAAA+AGG | 0.417335 | 4_4:-49155500 | None:intergenic |
| TAAAGAGATCATATTCCTCT+TGG | 0.428915 | 4_4:-49156199 | None:intergenic |
| ATAGTATATCATGGATTCTC+TGG | 0.430893 | 4_4:+49156173 | Msa0685110:three_prime_UTR |
| AGATTCAGCTTCAATGTACT+TGG | 0.436583 | 4_4:-49156095 | None:intergenic |
| ATGATGTTATTGTTTGCAAA+TGG | 0.440480 | 4_4:-49153328 | None:intergenic |
| CCTATGGTAACTACTGAATC+AGG | 0.444760 | 4_4:+49154327 | Msa0685110:CDS |
| TATGTTGCAATGGTTCCATC+TGG | 0.446081 | 4_4:+49154915 | Msa0685110:CDS |
| TTTGATGCTGCTAATGGAGC+TGG | 0.447449 | 4_4:+49153710 | Msa0685110:CDS |
| ATGACACAATATTACATCCT+TGG | 0.447775 | 4_4:+49153357 | Msa0685110:five_prime_UTR |
| AAACTTACATCAAATACTAC+TGG | 0.453698 | 4_4:-49155887 | None:intergenic |
| TGATATCCAACTGGTGGACT+AGG | 0.460176 | 4_4:-49154384 | None:intergenic |
| GGACTGTTTGGAGCCACCCT+TGG | 0.463548 | 4_4:-49155866 | None:intergenic |
| TGATGGTGATAAATTGAATT+GGG | 0.468025 | 4_4:-49155985 | None:intergenic |
| TCTCTGCTTATTATTATGGT+TGG | 0.470296 | 4_4:-49156256 | None:intergenic |
| CACCATTTAACCAAAAGATC+GGG | 0.473640 | 4_4:-49156227 | None:intergenic |
| CCACCATTTAACCAAAAGAT+CGG | 0.481451 | 4_4:-49156228 | None:intergenic |
| AGACAGAAGCTTACTGATCC+AGG | 0.482305 | 4_4:-49155543 | None:intergenic |
| TCGCAGTTGGCATTCCCTAA+AGG | 0.493586 | 4_4:+49155821 | Msa0685110:intron |
| TTACACACCTGATATCCAAC+TGG | 0.497134 | 4_4:-49154393 | None:intergenic |
| TCCTCATCCACGTCAAGTCC+TGG | 0.497402 | 4_4:-49155920 | None:intergenic |
| TTTATGCATGAAGGTACCTA+TGG | 0.499177 | 4_4:+49154311 | Msa0685110:intron |
| AATACAAGGATATTAAAGTT+GGG | 0.500943 | 4_4:+49154355 | Msa0685110:CDS |
| CATTAGCAGCATCAAATGAA+TGG | 0.505775 | 4_4:-49153703 | None:intergenic |
| CTGTCATCGATAGTATATCA+TGG | 0.512913 | 4_4:+49156164 | Msa0685110:three_prime_UTR |
| AAACGTCGGCTGTACATACC+TGG | 0.513530 | 4_4:+49155525 | Msa0685110:CDS |
| GTTATTGTTTGCAAATGGAA+TGG | 0.514203 | 4_4:-49153323 | None:intergenic |
| TGCGTTCAGTCAAGGTGGAA+TGG | 0.516263 | 4_4:-49155957 | None:intergenic |
| GAGAACAGGGAACATGTTAA+CGG | 0.518782 | 4_4:+49156275 | Msa0685110:three_prime_UTR |
| CTATCAAATATTTGTCCAGA+TGG | 0.522457 | 4_4:-49154930 | None:intergenic |
| TGAATCAGGTTTGCAATACA+AGG | 0.531477 | 4_4:+49154341 | Msa0685110:CDS |
| AGGACTTACAAAGTGGAAGC+AGG | 0.541635 | 4_4:-49153405 | None:intergenic |
| ATCCTTGGATATGCCTAGCA+TGG | 0.544626 | 4_4:+49153372 | Msa0685110:exon |
| GTGATAAAAGGACTTGATGA+AGG | 0.565095 | 4_4:+49155477 | Msa0685110:CDS |
| ACCAGGACTTGACGTGGATG+AGG | 0.572224 | 4_4:+49155919 | Msa0685110:CDS |
| TACAAAGTGGAAGCAGGAGA+GGG | 0.573806 | 4_4:-49153399 | None:intergenic |
| GGCTGCTAATTATGTTGCAA+TGG | 0.576500 | 4_4:+49154905 | Msa0685110:CDS |
| CATGATATACTATCGATGAC+AGG | 0.577750 | 4_4:-49156163 | None:intergenic |
| GGGTTGACTGCGTTCAGTCA+AGG | 0.578018 | 4_4:-49155965 | None:intergenic |
| GATATCCAACTGGTGGACTA+GGG | 0.580308 | 4_4:-49154383 | None:intergenic |
| AGGAGAGGGGAAGCCATGCT+AGG | 0.580475 | 4_4:-49153385 | None:intergenic |
| CTTTGAGGAGCAGTAAGAGA+AGG | 0.581278 | 4_4:-49153539 | None:intergenic |
| AAGTGAAGTCCACAGAGACA+AGG | 0.592596 | 4_4:+49153597 | Msa0685110:CDS |
| GTAAGTTTGGAATATGTACC+AGG | 0.597022 | 4_4:+49155902 | Msa0685110:CDS |
| AGTGCATTCCCTTGTCTCTG+TGG | 0.600039 | 4_4:-49153606 | None:intergenic |
| CAAGGCCCTAGTCCACCAGT+TGG | 0.601514 | 4_4:+49154378 | Msa0685110:CDS |
| AAAGGCCTTAATTCTGCACC+AGG | 0.603111 | 4_4:+49155839 | Msa0685110:CDS |
| CCTGATTCAGTAGTTACCAT+AGG | 0.608091 | 4_4:-49154327 | None:intergenic |
| CACACCTGATATCCAACTGG+TGG | 0.614939 | 4_4:-49154390 | None:intergenic |
| AAGGATATTAAAGTTGGGCA+AGG | 0.616109 | 4_4:+49154360 | Msa0685110:CDS |
| TTACAAAGTGGAAGCAGGAG+AGG | 0.616382 | 4_4:-49153400 | None:intergenic |
| AGTGAAGTCCACAGAGACAA+GGG | 0.625615 | 4_4:+49153598 | Msa0685110:CDS |
| ACAATTGTATAAGATAGTGA+TGG | 0.629046 | 4_4:-49156002 | None:intergenic |
| AGCCATGCTAGGCATATCCA+AGG | 0.638646 | 4_4:-49153374 | None:intergenic |
| TGCACCAGGAAGACCAAGGG+TGG | 0.644156 | 4_4:+49155853 | Msa0685110:CDS |
| ACAAAGTGGAAGCAGGAGAG+GGG | 0.648340 | 4_4:-49153398 | None:intergenic |
| TTCTGCACCAGGAAGACCAA+GGG | 0.663256 | 4_4:+49155850 | Msa0685110:CDS |
| ATAATAATAAGCAGAGAACA+GGG | 0.670910 | 4_4:+49156262 | Msa0685110:three_prime_UTR |
| TGAAAGTAGGAGGGAAACGT+CGG | 0.675740 | 4_4:+49155511 | Msa0685110:CDS |
| GGATGTAATATTGTGTCATG+TGG | 0.676551 | 4_4:-49153353 | None:intergenic |
| TGGATTCTCTGGTCTCCAAG+AGG | 0.680434 | 4_4:+49156184 | Msa0685110:three_prime_UTR |
| TTGACTGCGTTCAGTCAAGG+TGG | 0.698133 | 4_4:-49155962 | None:intergenic |
| ATTCTGCACCAGGAAGACCA+AGG | 0.707291 | 4_4:+49155849 | Msa0685110:CDS |
| ATATGTACCAGGACTTGACG+TGG | 0.731552 | 4_4:+49155913 | Msa0685110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTTATCTACTAAAATT+AGG | + | chr4_4:49153902-49153921 | Msa0685110:intron | 10.0% |
| !! | AATATATTAATCATTTGATA+AGG | - | chr4_4:49154758-49154777 | None:intergenic | 10.0% |
| !! | ATATTAACATAATAATCAAT+TGG | + | chr4_4:49155091-49155110 | Msa0685110:intron | 10.0% |
| !!! | TATTTTTCAAAAAACATTTA+AGG | - | chr4_4:49155387-49155406 | None:intergenic | 10.0% |
| !!! | TTTTAGTAGATAAATATTGA+AGG | - | chr4_4:49153900-49153919 | None:intergenic | 15.0% |
| !!! | ATATAAATTTAGAGTATCAT+AGG | - | chr4_4:49154557-49154576 | None:intergenic | 15.0% |
| !!! | TTTTATATAGATTCTACTTG+TGG | + | chr4_4:49153509-49153528 | Msa0685110:intron | 20.0% |
| !!! | TATGTGACTAAAAATGTTTT+CGG | + | chr4_4:49153949-49153968 | Msa0685110:intron | 20.0% |
| !!! | ATGTTTTCGGTTAAAAAAAT+TGG | + | chr4_4:49153962-49153981 | Msa0685110:intron | 20.0% |
| !!! | TGTTTTCGGTTAAAAAAATT+GGG | + | chr4_4:49153963-49153982 | Msa0685110:intron | 20.0% |
| !! | TCATTAACTATCGATATTAA+TGG | - | chr4_4:49154277-49154296 | None:intergenic | 20.0% |
| !! | AATACAAGGATATTAAAGTT+GGG | + | chr4_4:49154355-49154374 | Msa0685110:CDS | 20.0% |
| !! | AAGATACAAATCAAGTATTT+AGG | - | chr4_4:49154506-49154525 | None:intergenic | 20.0% |
| !!! | AAATACTTGATTTGTATCTT+AGG | + | chr4_4:49154506-49154525 | Msa0685110:intron | 20.0% |
| !!! | TATTGTAATTTGTAATGCTT+TGG | + | chr4_4:49155142-49155161 | Msa0685110:intron | 20.0% |
| !!! | TACAATTGTTAATTCTTTTG+AGG | + | chr4_4:49156016-49156035 | Msa0685110:three_prime_UTR | 20.0% |
| ! | ATGATGTTATTGTTTGCAAA+TGG | - | chr4_4:49153331-49153350 | None:intergenic | 25.0% |
| ! | CAGTATTATTTATGCATTGT+TGG | - | chr4_4:49153455-49153474 | None:intergenic | 25.0% |
| !!! | CATAATTTTGGTTTTTCTTC+TGG | - | chr4_4:49153743-49153762 | None:intergenic | 25.0% |
| !! | CAAGTTTCATCACATAATTT+TGG | - | chr4_4:49153755-49153774 | None:intergenic | 25.0% |
| ! | ATTTGTGAAGAACCTTATAA+TGG | - | chr4_4:49154074-49154093 | None:intergenic | 25.0% |
| ! | CAATACAAGGATATTAAAGT+TGG | + | chr4_4:49154354-49154373 | Msa0685110:CDS | 25.0% |
| ! | AGTAATCCTATATCATTATC+AGG | - | chr4_4:49154633-49154652 | None:intergenic | 25.0% |
| ! | GATTGACAGAAATTTGTAAT+CGG | - | chr4_4:49154963-49154982 | None:intergenic | 25.0% |
| !! | TACTTGTTTCTCTCTAAATT+TGG | - | chr4_4:49155117-49155136 | None:intergenic | 25.0% |
| !! | AGAAGTACACTATATTTACA+TGG | - | chr4_4:49155638-49155657 | None:intergenic | 25.0% |
| ! | TAAGTACTTAATTCTAACGT+TGG | + | chr4_4:49155774-49155793 | Msa0685110:intron | 25.0% |
| ! | AAACTTACATCAAATACTAC+TGG | - | chr4_4:49155890-49155909 | None:intergenic | 25.0% |
| ! | AGTAGTATTTGATGTAAGTT+TGG | + | chr4_4:49155889-49155908 | Msa0685110:CDS | 25.0% |
| !! | TGATGGTGATAAATTGAATT+GGG | - | chr4_4:49155988-49156007 | None:intergenic | 25.0% |
| ! | ACAATTGTATAAGATAGTGA+TGG | - | chr4_4:49156005-49156024 | None:intergenic | 25.0% |
| ! | TTCAATTTCCATACCTAAAA+TGG | + | chr4_4:49156133-49156152 | Msa0685110:three_prime_UTR | 25.0% |
| !!! | GTTTAATACCATTTTAGGTA+TGG | - | chr4_4:49156144-49156163 | None:intergenic | 25.0% |
| ! | ATAATAATAAGCAGAGAACA+GGG | + | chr4_4:49156262-49156281 | Msa0685110:three_prime_UTR | 25.0% |
| GTTATTGTTTGCAAATGGAA+TGG | - | chr4_4:49153326-49153345 | None:intergenic | 30.0% | |
| ATGACACAATATTACATCCT+TGG | + | chr4_4:49153357-49153376 | Msa0685110:five_prime_UTR | 30.0% | |
| !!! | AATTTTGGTTTTTCTTCTGG+TGG | - | chr4_4:49153740-49153759 | None:intergenic | 30.0% |
| AGAAAGAGCTTGAAAATGTA+TGG | + | chr4_4:49153777-49153796 | Msa0685110:intron | 30.0% | |
| AAAACTTGCAATGAAATGAC+AGG | - | chr4_4:49154139-49154158 | None:intergenic | 30.0% | |
| ! | ACTGAGTATTTTATGCATGA+AGG | + | chr4_4:49154302-49154321 | Msa0685110:intron | 30.0% |
| !! | CATTGACTGCATTTTTGAAA+TGG | - | chr4_4:49154461-49154480 | None:intergenic | 30.0% |
| ! | TTCAGTATTTTCTACGTAGA+AGG | - | chr4_4:49154589-49154608 | None:intergenic | 30.0% |
| ! | GGTACTGAAATCATCAATAT+TGG | - | chr4_4:49154612-49154631 | None:intergenic | 30.0% |
| ! | TCAGTACCTGATAATGATAT+AGG | + | chr4_4:49154624-49154643 | Msa0685110:intron | 30.0% |
| ! | CTTTAGCTAGTTTAGATTGA+AGG | - | chr4_4:49154725-49154744 | None:intergenic | 30.0% |
| ! | TTTTCATGTGCTTATCTGAT+AGG | + | chr4_4:49154881-49154900 | Msa0685110:intron | 30.0% |
| CTATCAAATATTTGTCCAGA+TGG | - | chr4_4:49154933-49154952 | None:intergenic | 30.0% | |
| CATCTGGACAAATATTTGAT+AGG | + | chr4_4:49154931-49154950 | Msa0685110:CDS | 30.0% | |
| AATCATGCCTAATAAGATGT+TGG | + | chr4_4:49155062-49155081 | Msa0685110:intron | 30.0% | |
| AACTGAAAAAGGAATGATCA+AGG | - | chr4_4:49155176-49155195 | None:intergenic | 30.0% | |
| AGATGACAGAAAACTGAAAA+AGG | - | chr4_4:49155187-49155206 | None:intergenic | 30.0% | |
| ! | TTTCTGTCATCTTTCGATTT+TGG | + | chr4_4:49155195-49155214 | Msa0685110:intron | 30.0% |
| !!! | TTTTTGAAGCTGTTGTCTTT+GGG | + | chr4_4:49155218-49155237 | Msa0685110:intron | 30.0% |
| ATAACTGAGCATTCTAATGA+AGG | - | chr4_4:49155245-49155264 | None:intergenic | 30.0% | |
| ATGAGCTGTAAAATTGGAAA+GGG | - | chr4_4:49155315-49155334 | None:intergenic | 30.0% | |
| AATGAGCTGTAAAATTGGAA+AGG | - | chr4_4:49155316-49155335 | None:intergenic | 30.0% | |
| ! | TTTCCAATTTTACAGCTCAT+TGG | + | chr4_4:49155315-49155334 | Msa0685110:intron | 30.0% |
| TGAAAGGATTATCAAACACT+AGG | - | chr4_4:49155422-49155441 | None:intergenic | 30.0% | |
| TAATCCTTTCAAAGACTAAC+TGG | + | chr4_4:49155431-49155450 | Msa0685110:intron | 30.0% | |
| !! | AATACCAGTTAGTCTTTGAA+AGG | - | chr4_4:49155438-49155457 | None:intergenic | 30.0% |
| TTTATCACCTGATATCTCAT+CGG | - | chr4_4:49155465-49155484 | None:intergenic | 30.0% | |
| ATGAGATATCAGGTGATAAA+AGG | + | chr4_4:49155465-49155484 | Msa0685110:intron | 30.0% | |
| !! | GTCAATGCACATTTTAAGTA+TGG | - | chr4_4:49155684-49155703 | None:intergenic | 30.0% |
| ! | AATGTGCATTGACAACATAA+TGG | + | chr4_4:49155691-49155710 | Msa0685110:intron | 30.0% |
| TGACAACATAATGGTGTAAA+AGG | + | chr4_4:49155700-49155719 | Msa0685110:intron | 30.0% | |
| CTGACAGTTTATTTACAGAT+TGG | + | chr4_4:49155751-49155770 | Msa0685110:intron | 30.0% | |
| ! | GTGATGGTGATAAATTGAAT+TGG | - | chr4_4:49155989-49156008 | None:intergenic | 30.0% |
| ! | GACAGGTTTAATACCATTTT+AGG | - | chr4_4:49156149-49156168 | None:intergenic | 30.0% |
| ATAGTATATCATGGATTCTC+TGG | + | chr4_4:49156173-49156192 | Msa0685110:three_prime_UTR | 30.0% | |
| TAAAGAGATCATATTCCTCT+TGG | - | chr4_4:49156202-49156221 | None:intergenic | 30.0% | |
| TCTCTGCTTATTATTATGGT+TGG | - | chr4_4:49156259-49156278 | None:intergenic | 30.0% | |
| CTGTTCTCTGCTTATTATTA+TGG | - | chr4_4:49156263-49156282 | None:intergenic | 30.0% | |
| CATAATAATAAGCAGAGAAC+AGG | + | chr4_4:49156261-49156280 | Msa0685110:three_prime_UTR | 30.0% | |
| GGATGTAATATTGTGTCATG+TGG | - | chr4_4:49153356-49153375 | None:intergenic | 35.0% | |
| AAGTGAAAGGACTTACAAAG+TGG | - | chr4_4:49153415-49153434 | None:intergenic | 35.0% | |
| TGAGGAAAAGAGAAAGTGAA+AGG | - | chr4_4:49153428-49153447 | None:intergenic | 35.0% | |
| TTATGCATTGTTGGATTGTG+AGG | - | chr4_4:49153446-49153465 | None:intergenic | 35.0% | |
| TTCTCAACAGAAATGCTTTG+AGG | - | chr4_4:49153557-49153576 | None:intergenic | 35.0% | |
| AAGAAAGTCTCTACGTGAAT+TGG | - | chr4_4:49153651-49153670 | None:intergenic | 35.0% | |
| AATTCACGTAGAGACTTTCT+TGG | + | chr4_4:49153650-49153669 | Msa0685110:CDS | 35.0% | |
| !! | GACTTTCTTGGATTAGCATT+AGG | + | chr4_4:49153662-49153681 | Msa0685110:CDS | 35.0% |
| CATTAGCAGCATCAAATGAA+TGG | - | chr4_4:49153706-49153725 | None:intergenic | 35.0% | |
| CATTCATTTGATGCTGCTAA+TGG | + | chr4_4:49153704-49153723 | Msa0685110:CDS | 35.0% | |
| TCACAGTTAAGGCATAGAAA+GGG | - | chr4_4:49153818-49153837 | None:intergenic | 35.0% | |
| ATCACAGTTAAGGCATAGAA+AGG | - | chr4_4:49153819-49153838 | None:intergenic | 35.0% | |
| GGAGACATTAATCACAGTTA+AGG | - | chr4_4:49153829-49153848 | None:intergenic | 35.0% | |
| ATTCTGACTTCTGAGCAATA+TGG | - | chr4_4:49153850-49153869 | None:intergenic | 35.0% | |
| CTCTTAAAACGTTTGACGAA+AGG | + | chr4_4:49154044-49154063 | Msa0685110:intron | 35.0% | |
| ACGAAAGGACTTCCATTATA+AGG | + | chr4_4:49154059-49154078 | Msa0685110:intron | 35.0% | |
| !! | TTTATGCATGAAGGTACCTA+TGG | + | chr4_4:49154311-49154330 | Msa0685110:intron | 35.0% |
| TGAATCAGGTTTGCAATACA+AGG | + | chr4_4:49154341-49154360 | Msa0685110:CDS | 35.0% | |
| AAGGATATTAAAGTTGGGCA+AGG | + | chr4_4:49154360-49154379 | Msa0685110:CDS | 35.0% | |
| !!! | TGACTGCATTTTTGAAATGG+TGG | - | chr4_4:49154458-49154477 | None:intergenic | 35.0% |
| GCATCAATCTCGTTCAAAAT+TGG | - | chr4_4:49154484-49154503 | None:intergenic | 35.0% | |
| AGTTTAGATTGAAGGAAGCA+AGG | - | chr4_4:49154717-49154736 | None:intergenic | 35.0% | |
| TGACAGAAATTTGTAATCGG+CGG | - | chr4_4:49154960-49154979 | None:intergenic | 35.0% | |
| ATACAACAGCAAACATCACT+TGG | - | chr4_4:49155013-49155032 | None:intergenic | 35.0% | |
| TCACACTCCAACATCTTATT+AGG | - | chr4_4:49155072-49155091 | None:intergenic | 35.0% | |
| !!! | GTTTTTGAAGCTGTTGTCTT+TGG | + | chr4_4:49155217-49155236 | Msa0685110:intron | 35.0% |
| TGTATGCACTGTAATGAGAA+TGG | + | chr4_4:49155266-49155285 | Msa0685110:intron | 35.0% | |
| TCTCCAATGAGCTGTAAAAT+TGG | - | chr4_4:49155321-49155340 | None:intergenic | 35.0% | |
| ! | TTTTACAGCTCATTGGAGAA+AGG | + | chr4_4:49155322-49155341 | Msa0685110:intron | 35.0% |
| TTATCACCTGATATCTCATC+GGG | - | chr4_4:49155464-49155483 | None:intergenic | 35.0% | |
| GTGATAAAAGGACTTGATGA+AGG | + | chr4_4:49155477-49155496 | Msa0685110:CDS | 35.0% | |
| ! | TTTTGAGCATGAAAGTAGGA+GGG | + | chr4_4:49155502-49155521 | Msa0685110:CDS | 35.0% |
| !! | GTTTTGAATCTTGCAATGCT+GGG | - | chr4_4:49155590-49155609 | None:intergenic | 35.0% |
| !! | TGTTTTGAATCTTGCAATGC+TGG | - | chr4_4:49155591-49155610 | None:intergenic | 35.0% |
| !! | GTGTACTTCTAGTTTCTCAA+TGG | + | chr4_4:49155648-49155667 | Msa0685110:intron | 35.0% |
| !! | TTCTTTTCTTGTTTCGCAGT+TGG | + | chr4_4:49155808-49155827 | Msa0685110:intron | 35.0% |
| TCAAATACTACTGGACTGTT+TGG | - | chr4_4:49155881-49155900 | None:intergenic | 35.0% | |
| ! | GTAAGTTTGGAATATGTACC+AGG | + | chr4_4:49155902-49155921 | Msa0685110:CDS | 35.0% |
| AGATTCAGCTTCAATGTACT+TGG | - | chr4_4:49156098-49156117 | None:intergenic | 35.0% | |
| CATGATATACTATCGATGAC+AGG | - | chr4_4:49156166-49156185 | None:intergenic | 35.0% | |
| CTGTCATCGATAGTATATCA+TGG | + | chr4_4:49156164-49156183 | Msa0685110:three_prime_UTR | 35.0% | |
| ! | CTTTATTCTACCCGATCTTT+TGG | + | chr4_4:49156217-49156236 | Msa0685110:three_prime_UTR | 35.0% |
| !! | TACCCGATCTTTTGGTTAAA+TGG | + | chr4_4:49156225-49156244 | Msa0685110:three_prime_UTR | 35.0% |
| CACCATTTAACCAAAAGATC+GGG | - | chr4_4:49156230-49156249 | None:intergenic | 35.0% | |
| CCACCATTTAACCAAAAGAT+CGG | - | chr4_4:49156231-49156250 | None:intergenic | 35.0% | |
| ! | AGCTTCTGTCAGGGAATTTT+TGG | - | chr4_4:49154169-49154188 | None:intergenic | 40.0% |
| ACTGAACAAAGCTTCTGTCA+GGG | - | chr4_4:49154178-49154197 | None:intergenic | 40.0% | |
| CCTGATTCAGTAGTTACCAT+AGG | - | chr4_4:49154330-49154349 | None:intergenic | 40.0% | |
| CCTATGGTAACTACTGAATC+AGG | + | chr4_4:49154327-49154346 | Msa0685110:CDS | 40.0% | |
| TTACACACCTGATATCCAAC+TGG | - | chr4_4:49154396-49154415 | None:intergenic | 40.0% | |
| TAGATTGAAGGAAGCAAGGA+CGG | - | chr4_4:49154713-49154732 | None:intergenic | 40.0% | |
| AACAATACACATGCTGACAG+AGG | - | chr4_4:49154837-49154856 | None:intergenic | 40.0% | |
| TCATGTGCTTATCTGATAGG+TGG | + | chr4_4:49154884-49154903 | Msa0685110:intron | 40.0% | |
| GGCTGCTAATTATGTTGCAA+TGG | + | chr4_4:49154905-49154924 | Msa0685110:CDS | 40.0% | |
| TATGTTGCAATGGTTCCATC+TGG | + | chr4_4:49154915-49154934 | Msa0685110:CDS | 40.0% | |
| CAACGCGAAAAATGTAAAGC+TGG | - | chr4_4:49155348-49155367 | None:intergenic | 40.0% | |
| ! | CAGCTTTACATTTTTCGCGT+TGG | + | chr4_4:49155346-49155365 | Msa0685110:CDS | 40.0% |
| ! | TACATTTTTCGCGTTGGATC+TGG | + | chr4_4:49155352-49155371 | Msa0685110:CDS | 40.0% |
| ATTCAACCCGATGAGATATC+AGG | + | chr4_4:49155455-49155474 | Msa0685110:intron | 40.0% | |
| CTCCTACTTTCATGCTCAAA+AGG | - | chr4_4:49155503-49155522 | None:intergenic | 40.0% | |
| ! | CTTTTGAGCATGAAAGTAGG+AGG | + | chr4_4:49155501-49155520 | Msa0685110:CDS | 40.0% |
| GTGCAGAATTAAGGCCTTTA+GGG | - | chr4_4:49155838-49155857 | None:intergenic | 40.0% | |
| !! | CCGATCTTTTGGTTAAATGG+TGG | + | chr4_4:49156228-49156247 | Msa0685110:three_prime_UTR | 40.0% |
| GAGAACAGGGAACATGTTAA+CGG | + | chr4_4:49156275-49156294 | Msa0685110:three_prime_UTR | 40.0% | |
| ATCCTTGGATATGCCTAGCA+TGG | + | chr4_4:49153372-49153391 | Msa0685110:exon | 45.0% | |
| TACAAAGTGGAAGCAGGAGA+GGG | - | chr4_4:49153402-49153421 | None:intergenic | 45.0% | |
| TTACAAAGTGGAAGCAGGAG+AGG | - | chr4_4:49153403-49153422 | None:intergenic | 45.0% | |
| AGGACTTACAAAGTGGAAGC+AGG | - | chr4_4:49153408-49153427 | None:intergenic | 45.0% | |
| ! | CTTTGAGGAGCAGTAAGAGA+AGG | - | chr4_4:49153542-49153561 | None:intergenic | 45.0% |
| AAGTGAAGTCCACAGAGACA+AGG | + | chr4_4:49153597-49153616 | Msa0685110:CDS | 45.0% | |
| AGTGAAGTCCACAGAGACAA+GGG | + | chr4_4:49153598-49153617 | Msa0685110:CDS | 45.0% | |
| TTTGATGCTGCTAATGGAGC+TGG | + | chr4_4:49153710-49153729 | Msa0685110:CDS | 45.0% | |
| TTGAAGGTGACACAACTGCA+TGG | - | chr4_4:49153884-49153903 | None:intergenic | 45.0% | |
| CACTGAACAAAGCTTCTGTC+AGG | - | chr4_4:49154179-49154198 | None:intergenic | 45.0% | |
| !! | CTGACAGAAGCTTTGTTCAG+TGG | + | chr4_4:49154177-49154196 | Msa0685110:intron | 45.0% |
| !! | GATATCCAACTGGTGGACTA+GGG | - | chr4_4:49154386-49154405 | None:intergenic | 45.0% |
| !! | TGATATCCAACTGGTGGACT+AGG | - | chr4_4:49154387-49154406 | None:intergenic | 45.0% |
| TAGTCCACCAGTTGGATATC+AGG | + | chr4_4:49154386-49154405 | Msa0685110:CDS | 45.0% | |
| AGATTGAAGGAAGCAAGGAC+GGG | - | chr4_4:49154712-49154731 | None:intergenic | 45.0% | |
| ! | GGCCTTTTGAGCATGAAAGT+AGG | + | chr4_4:49155498-49155517 | Msa0685110:CDS | 45.0% |
| TGAAAGTAGGAGGGAAACGT+CGG | + | chr4_4:49155511-49155530 | Msa0685110:CDS | 45.0% | |
| AGACAGAAGCTTACTGATCC+AGG | - | chr4_4:49155546-49155565 | None:intergenic | 45.0% | |
| GGTGCAGAATTAAGGCCTTT+AGG | - | chr4_4:49155839-49155858 | None:intergenic | 45.0% | |
| AAAGGCCTTAATTCTGCACC+AGG | + | chr4_4:49155839-49155858 | Msa0685110:CDS | 45.0% | |
| GTCTTCCTGGTGCAGAATTA+AGG | - | chr4_4:49155847-49155866 | None:intergenic | 45.0% | |
| ATATGTACCAGGACTTGACG+TGG | + | chr4_4:49155913-49155932 | Msa0685110:CDS | 45.0% | |
| AGCCATGCTAGGCATATCCA+AGG | - | chr4_4:49153377-49153396 | None:intergenic | 50.0% | |
| ACAAAGTGGAAGCAGGAGAG+GGG | - | chr4_4:49153401-49153420 | None:intergenic | 50.0% | |
| AGTGCATTCCCTTGTCTCTG+TGG | - | chr4_4:49153609-49153628 | None:intergenic | 50.0% | |
| CACACCTGATATCCAACTGG+TGG | - | chr4_4:49154393-49154412 | None:intergenic | 50.0% | |
| GCGTTCAAGGGAAACTGAAC+AGG | - | chr4_4:49154429-49154448 | None:intergenic | 50.0% | |
| GGAAAGGGTCATACTCACAC+AGG | - | chr4_4:49155300-49155319 | None:intergenic | 50.0% | |
| ! | TTTTCGCGTTGGATCTGGTC+AGG | + | chr4_4:49155357-49155376 | Msa0685110:CDS | 50.0% |
| ! | AAACGTCGGCTGTACATACC+TGG | + | chr4_4:49155525-49155544 | Msa0685110:CDS | 50.0% |
| TCGCAGTTGGCATTCCCTAA+AGG | + | chr4_4:49155821-49155840 | Msa0685110:intron | 50.0% | |
| ATTCTGCACCAGGAAGACCA+AGG | + | chr4_4:49155849-49155868 | Msa0685110:CDS | 50.0% | |
| TTCTGCACCAGGAAGACCAA+GGG | + | chr4_4:49155850-49155869 | Msa0685110:CDS | 50.0% | |
| TGCGTTCAGTCAAGGTGGAA+TGG | - | chr4_4:49155960-49155979 | None:intergenic | 50.0% | |
| TTGACTGCGTTCAGTCAAGG+TGG | - | chr4_4:49155965-49155984 | None:intergenic | 50.0% | |
| TGGATTCTCTGGTCTCCAAG+AGG | + | chr4_4:49156184-49156203 | Msa0685110:three_prime_UTR | 50.0% | |
| TGGTGGAGACGAGCGTTCAA+GGG | - | chr4_4:49154441-49154460 | None:intergenic | 55.0% | |
| ! | ATGGTGGAGACGAGCGTTCA+AGG | - | chr4_4:49154442-49154461 | None:intergenic | 55.0% |
| ACCAGGACTTGACGTGGATG+AGG | + | chr4_4:49155919-49155938 | Msa0685110:CDS | 55.0% | |
| TCCTCATCCACGTCAAGTCC+TGG | - | chr4_4:49155923-49155942 | None:intergenic | 55.0% | |
| GGGTTGACTGCGTTCAGTCA+AGG | - | chr4_4:49155968-49155987 | None:intergenic | 55.0% | |
| AGGAGAGGGGAAGCCATGCT+AGG | - | chr4_4:49153388-49153407 | None:intergenic | 60.0% | |
| CAAGGCCCTAGTCCACCAGT+TGG | + | chr4_4:49154378-49154397 | Msa0685110:CDS | 60.0% | |
| TGCACCAGGAAGACCAAGGG+TGG | + | chr4_4:49155853-49155872 | Msa0685110:CDS | 60.0% | |
| ! | GGACTGTTTGGAGCCACCCT+TGG | - | chr4_4:49155869-49155888 | None:intergenic | 60.0% |
| ! | GGAGCCACCCTTGGTCTTCC+TGG | - | chr4_4:49155860-49155879 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 49153302 | 49156305 | 49153302 | ID=Msa0685110;Name=Msa0685110 |
| chr4_4 | mRNA | 49153302 | 49156305 | 49153302 | ID=Msa0685110-mRNA-1;Parent=Msa0685110;Name=Msa0685110-mRNA-1;_AED=0.02;_eAED=0.02;_QI=80|1|1|1|1|1|7|359|229 |
| chr4_4 | exon | 49153302 | 49153418 | 49153302 | ID=Msa0685110-mRNA-1:exon:12192;Parent=Msa0685110-mRNA-1 |
| chr4_4 | exon | 49153519 | 49153793 | 49153519 | ID=Msa0685110-mRNA-1:exon:12193;Parent=Msa0685110-mRNA-1 |
| chr4_4 | exon | 49154324 | 49154407 | 49154324 | ID=Msa0685110-mRNA-1:exon:12194;Parent=Msa0685110-mRNA-1 |
| chr4_4 | exon | 49154903 | 49154952 | 49154903 | ID=Msa0685110-mRNA-1:exon:12195;Parent=Msa0685110-mRNA-1 |
| chr4_4 | exon | 49155330 | 49155378 | 49155330 | ID=Msa0685110-mRNA-1:exon:12196;Parent=Msa0685110-mRNA-1 |
| chr4_4 | exon | 49155477 | 49155551 | 49155477 | ID=Msa0685110-mRNA-1:exon:12197;Parent=Msa0685110-mRNA-1 |
| chr4_4 | exon | 49155827 | 49156305 | 49155827 | ID=Msa0685110-mRNA-1:exon:12198;Parent=Msa0685110-mRNA-1 |
| chr4_4 | five_prime_UTR | 49153302 | 49153381 | 49153302 | ID=Msa0685110-mRNA-1:five_prime_utr;Parent=Msa0685110-mRNA-1 |
| chr4_4 | CDS | 49153382 | 49153418 | 49153382 | ID=Msa0685110-mRNA-1:cds;Parent=Msa0685110-mRNA-1 |
| chr4_4 | CDS | 49153519 | 49153793 | 49153519 | ID=Msa0685110-mRNA-1:cds;Parent=Msa0685110-mRNA-1 |
| chr4_4 | CDS | 49154324 | 49154407 | 49154324 | ID=Msa0685110-mRNA-1:cds;Parent=Msa0685110-mRNA-1 |
| chr4_4 | CDS | 49154903 | 49154952 | 49154903 | ID=Msa0685110-mRNA-1:cds;Parent=Msa0685110-mRNA-1 |
| chr4_4 | CDS | 49155330 | 49155378 | 49155330 | ID=Msa0685110-mRNA-1:cds;Parent=Msa0685110-mRNA-1 |
| chr4_4 | CDS | 49155477 | 49155551 | 49155477 | ID=Msa0685110-mRNA-1:cds;Parent=Msa0685110-mRNA-1 |
| chr4_4 | CDS | 49155827 | 49155946 | 49155827 | ID=Msa0685110-mRNA-1:cds;Parent=Msa0685110-mRNA-1 |
| chr4_4 | three_prime_UTR | 49155947 | 49156305 | 49155947 | ID=Msa0685110-mRNA-1:three_prime_utr;Parent=Msa0685110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
