Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0542060 | XP_003606829.2 | 97.817 | 229 | 5 | 0 | 1 | 229 | 1 | 229 | 6.76e-161 | 454 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0542060 | sp|O22870|FK163_ARATH | 68.122 | 229 | 67 | 2 | 1 | 229 | 1 | 223 | 8.55e-100 | 292 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0542060 | G7JEW8 | 97.817 | 229 | 5 | 0 | 1 | 229 | 1 | 229 | 3.23e-161 | 454 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027250 | Msa0542060 | 0.882010 | 1.489949e-70 | -8.615850e-47 |
| Msa0075160 | Msa0542060 | 0.887046 | 2.012741e-72 | -8.615850e-47 |
| Msa0123000 | Msa0542060 | 0.875172 | 3.797855e-68 | -8.615850e-47 |
| Msa0126000 | Msa0542060 | 0.832383 | 9.755107e-56 | -8.615850e-47 |
| Msa0167500 | Msa0542060 | 0.898352 | 5.774403e-77 | -8.615850e-47 |
| Msa0168410 | Msa0542060 | 0.841519 | 4.523422e-58 | -8.615850e-47 |
| Msa0173050 | Msa0542060 | -0.809755 | 1.617748e-50 | -8.615850e-47 |
| Msa0386280 | Msa0542060 | 0.815808 | 7.645544e-52 | -8.615850e-47 |
| Msa0299530 | Msa0542060 | 0.833477 | 5.215640e-56 | -8.615850e-47 |
| Msa0542060 | Msa0559650 | 0.809206 | 2.122294e-50 | -8.615850e-47 |
| Msa0542060 | Msa0645800 | 0.990045 | 8.325523e-181 | -8.615850e-47 |
| Msa0542060 | Msa0654410 | 0.830853 | 2.324680e-55 | -8.615850e-47 |
| Msa0542060 | Msa0654490 | 0.803066 | 4.162495e-49 | -8.615850e-47 |
| Msa0542060 | Msa0685110 | 0.995896 | 4.356805e-221 | -8.615850e-47 |
| Msa0542060 | Msa0685500 | 0.982906 | 2.590291e-156 | -8.615850e-47 |
| Msa0542060 | Msa0719900 | 0.857660 | 1.403132e-62 | -8.615850e-47 |
| Msa0542060 | Msa0784780 | 0.805097 | 1.573262e-49 | -8.615850e-47 |
| Msa0542060 | Msa0804690 | 0.844255 | 8.466966e-59 | -8.615850e-47 |
| Msa0542060 | Msa0858250 | 0.814907 | 1.213081e-51 | -8.615850e-47 |
| Msa0542060 | Msa0882480 | 0.804387 | 2.213459e-49 | -8.615850e-47 |
| Msa0542060 | Msa0922100 | 0.879968 | 8.076581e-70 | -8.615850e-47 |
| Msa0542060 | Msa0960880 | 0.819961 | 8.821621e-53 | -8.615850e-47 |
| Msa0542060 | Msa0994250 | 0.873742 | 1.161860e-67 | -8.615850e-47 |
| Msa0542060 | Msa1163190 | 0.888159 | 7.556224e-73 | -8.615850e-47 |
| Msa0542060 | Msa1173800 | -0.871595 | 6.062761e-67 | -8.615850e-47 |
| Msa0542060 | Msa1238310 | -0.848849 | 4.713870e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0542060 | MtrunA17_Chr4g0033841 | 97.817 | 229 | 5 | 0 | 1 | 229 | 1 | 229 | 6.22e-165 | 454 |
| Msa0542060 | MtrunA17_Chr8g0382711 | 27.568 | 185 | 117 | 4 | 41 | 218 | 29 | 203 | 1.14e-17 | 78.6 |
| Msa0542060 | MtrunA17_Chr4g0052911 | 33.918 | 171 | 92 | 5 | 55 | 218 | 80 | 236 | 3.16e-16 | 75.1 |
| Msa0542060 | MtrunA17_Chr8g0377771 | 40.367 | 109 | 60 | 3 | 111 | 218 | 36 | 140 | 3.77e-16 | 77.0 |
| Msa0542060 | MtrunA17_Chr8g0335211 | 40.449 | 89 | 53 | 0 | 108 | 196 | 95 | 183 | 7.14e-15 | 70.9 |
| Msa0542060 | MtrunA17_Chr8g0339141 | 40.860 | 93 | 51 | 2 | 126 | 218 | 54 | 142 | 7.19e-14 | 70.1 |
| Msa0542060 | MtrunA17_Chr8g0339171 | 38.000 | 100 | 58 | 2 | 130 | 229 | 50 | 145 | 4.63e-13 | 64.7 |
| Msa0542060 | MtrunA17_Chr5g0396231 | 40.678 | 118 | 55 | 5 | 112 | 223 | 393 | 501 | 1.44e-12 | 66.2 |
| Msa0542060 | MtrunA17_Chr7g0255551 | 36.559 | 93 | 55 | 2 | 126 | 218 | 35 | 123 | 8.04e-12 | 64.3 |
| Msa0542060 | MtrunA17_Chr7g0234801 | 36.735 | 98 | 57 | 3 | 122 | 218 | 43 | 136 | 3.79e-11 | 62.0 |
| Msa0542060 | MtrunA17_Chr7g0214751 | 35.780 | 109 | 58 | 4 | 108 | 205 | 97 | 204 | 6.57e-11 | 60.5 |
| Msa0542060 | MtrunA17_Chr1g0179681 | 37.815 | 119 | 58 | 5 | 109 | 218 | 129 | 240 | 9.33e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0542060 | AT2G43560.1 | 68.122 | 229 | 67 | 2 | 1 | 229 | 1 | 223 | 8.70e-101 | 292 |
| Msa0542060 | AT2G43560.2 | 82.424 | 165 | 29 | 0 | 65 | 229 | 3 | 167 | 1.08e-93 | 272 |
| Msa0542060 | AT5G45680.1 | 37.500 | 128 | 71 | 3 | 101 | 221 | 80 | 205 | 9.54e-18 | 79.0 |
| Msa0542060 | AT4G39710.1 | 37.190 | 121 | 68 | 3 | 111 | 223 | 93 | 213 | 2.93e-16 | 75.1 |
| Msa0542060 | AT4G39710.3 | 37.190 | 121 | 68 | 3 | 111 | 223 | 93 | 213 | 2.93e-16 | 75.1 |
| Msa0542060 | AT5G48580.1 | 40.449 | 89 | 49 | 2 | 130 | 218 | 52 | 136 | 4.65e-14 | 68.2 |
| Msa0542060 | AT3G60370.1 | 36.937 | 111 | 69 | 1 | 87 | 196 | 94 | 204 | 5.16e-14 | 69.3 |
| Msa0542060 | AT3G25220.1 | 39.362 | 94 | 53 | 2 | 130 | 223 | 52 | 141 | 7.09e-14 | 67.4 |
| Msa0542060 | AT3G60370.2 | 36.937 | 111 | 69 | 1 | 87 | 196 | 123 | 233 | 7.74e-14 | 69.3 |
| Msa0542060 | AT5G05420.1 | 43.333 | 90 | 44 | 3 | 130 | 218 | 56 | 139 | 3.07e-13 | 65.5 |
| Msa0542060 | AT3G25230.1 | 36.697 | 109 | 64 | 3 | 111 | 218 | 37 | 141 | 4.55e-12 | 65.5 |
| Msa0542060 | AT3G25230.2 | 36.697 | 109 | 64 | 3 | 111 | 218 | 37 | 141 | 5.32e-12 | 65.1 |
| Msa0542060 | AT5G48570.1 | 36.283 | 113 | 67 | 3 | 107 | 218 | 41 | 149 | 2.96e-11 | 62.8 |
| Msa0542060 | AT4G25340.1 | 38.182 | 110 | 60 | 5 | 112 | 218 | 369 | 473 | 3.19e-11 | 62.8 |
Find 85 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTTCTCTGCTTATTATTA+TGG | 0.134912 | 4_1:-26163429 | None:intergenic |
| TTCAATTTCCATACCTAAAA+TGG | 0.140163 | 4_1:+26163302 | Msa0542060:three_prime_UTR |
| GGAGCCACCCTTGGTCTTCC+TGG | 0.209095 | 4_1:-26163025 | None:intergenic |
| CAAGTTTCATCACATAATTT+TGG | 0.254636 | 4_1:-26160920 | None:intergenic |
| GTGCAGAATTAAGGCCTTTA+GGG | 0.275774 | 4_1:-26163003 | None:intergenic |
| CATTCATTTGATGCTGCTAA+TGG | 0.284118 | 4_1:+26160872 | Msa0542060:CDS |
| GGTGCAGAATTAAGGCCTTT+AGG | 0.289156 | 4_1:-26163004 | None:intergenic |
| GTCTTCCTGGTGCAGAATTA+AGG | 0.291862 | 4_1:-26163012 | None:intergenic |
| CAAACTAGACAAACTAGATT+TGG | 0.295021 | 4_1:+26160462 | None:intergenic |
| AATTCACGTAGAGACTTTCT+TGG | 0.312447 | 4_1:+26160818 | Msa0542060:CDS |
| CTTAATTCTACCCGATCTTT+TGG | 0.323765 | 4_1:+26163386 | Msa0542060:three_prime_UTR |
| ATGAGATATCAGGTGATAAA+AGG | 0.326010 | 4_1:+26162633 | Msa0542060:intron |
| AGTAGTATTTGATGTAAGTT+TGG | 0.332631 | 4_1:+26163057 | Msa0542060:CDS |
| TAGTCCACCAGTTGGATATC+AGG | 0.360762 | 4_1:+26161554 | Msa0542060:CDS |
| AAGAAAGTCTCTACGTGAAT+TGG | 0.368565 | 4_1:-26160816 | None:intergenic |
| CATAATAATAAGCAGAGAAC+AGG | 0.368619 | 4_1:+26163430 | Msa0542060:three_prime_UTR |
| GACTTTCTTGGATTAGCATT+AGG | 0.374464 | 4_1:+26160830 | Msa0542060:CDS |
| CAATACAAGGATATTAAAGT+TGG | 0.375129 | 4_1:+26161522 | Msa0542060:CDS |
| TCAAATACTACTGGACTGTT+TGG | 0.387721 | 4_1:-26163046 | None:intergenic |
| CATCTGGACAAATATTTGAT+AGG | 0.389186 | 4_1:+26162099 | Msa0542060:CDS |
| GTGATGGTGATAAATTGAAT+TGG | 0.399389 | 4_1:-26163155 | None:intergenic |
| TTAAGAGATCATATTCCTCT+TGG | 0.404077 | 4_1:-26163368 | None:intergenic |
| TTCTCAACAGAAATGCTTTG+AGG | 0.406961 | 4_1:-26160722 | None:intergenic |
| CTCCTACTTTCATGCTCAAA+AGG | 0.417335 | 4_1:-26162668 | None:intergenic |
| ATAGTATATCATGGATTCTC+TGG | 0.430893 | 4_1:+26163342 | Msa0542060:three_prime_UTR |
| AGATTCAGCTTCAATGTACT+TGG | 0.436583 | 4_1:-26163264 | None:intergenic |
| ATGATGTTATTGTTTGCAAA+TGG | 0.440480 | 4_1:-26160495 | None:intergenic |
| CCTATGGTAACTACTGAATC+AGG | 0.444760 | 4_1:+26161495 | Msa0542060:CDS |
| TATGTTGCAATGGTTCCATC+TGG | 0.446081 | 4_1:+26162083 | Msa0542060:CDS |
| TTTGATGCTGCTAATGGAGC+TGG | 0.447449 | 4_1:+26160878 | Msa0542060:CDS |
| ATGACACAATATTACATCCT+TGG | 0.447775 | 4_1:+26160524 | Msa0542060:five_prime_UTR |
| AAACTTACATCAAATACTAC+TGG | 0.453698 | 4_1:-26163055 | None:intergenic |
| TGATATCCAACTGGTGGACT+AGG | 0.460176 | 4_1:-26161552 | None:intergenic |
| GGACTGTTTGGAGCCACCCT+TGG | 0.463548 | 4_1:-26163034 | None:intergenic |
| TGATGGTGATAAATTGAATT+GGG | 0.468025 | 4_1:-26163154 | None:intergenic |
| TCTCTGCTTATTATTATGGT+TGG | 0.470296 | 4_1:-26163425 | None:intergenic |
| AGACAGAAGCTTACTGATCC+AGG | 0.482305 | 4_1:-26162711 | None:intergenic |
| TCGCAGTTGGCATTCCCTAA+AGG | 0.493586 | 4_1:+26162989 | Msa0542060:intron |
| TTACACACCTGATATCCAAC+TGG | 0.497134 | 4_1:-26161561 | None:intergenic |
| TCCTCATCCACGTCAAGTCC+TGG | 0.497402 | 4_1:-26163088 | None:intergenic |
| CACCATTTGACCAAAAGATC+GGG | 0.498608 | 4_1:-26163396 | None:intergenic |
| TTTATGCATGAAGGTACCTA+TGG | 0.499177 | 4_1:+26161479 | Msa0542060:intron |
| AATACAAGGATATTAAAGTT+GGG | 0.500943 | 4_1:+26161523 | Msa0542060:CDS |
| CATTAGCAGCATCAAATGAA+TGG | 0.505775 | 4_1:-26160871 | None:intergenic |
| CCACCATTTGACCAAAAGAT+CGG | 0.508402 | 4_1:-26163397 | None:intergenic |
| CTGTCATCGATAGTATATCA+TGG | 0.512913 | 4_1:+26163333 | Msa0542060:three_prime_UTR |
| AAACGTCGGCTGTACATACC+TGG | 0.513530 | 4_1:+26162693 | Msa0542060:CDS |
| GTTATTGTTTGCAAATGGAA+TGG | 0.514203 | 4_1:-26160490 | None:intergenic |
| TGCGTTCAGTCAAGGTGGAA+TGG | 0.516263 | 4_1:-26163126 | None:intergenic |
| GAGAACAGGGAACATGTTAA+CGG | 0.518782 | 4_1:+26163444 | Msa0542060:three_prime_UTR |
| CTATCAAATATTTGTCCAGA+TGG | 0.522457 | 4_1:-26162098 | None:intergenic |
| TGAATCAGGTTTGCAATACA+AGG | 0.531477 | 4_1:+26161509 | Msa0542060:CDS |
| AGGACTTACAAAGTGGAAGC+AGG | 0.541635 | 4_1:-26160572 | None:intergenic |
| ATCCTTGGATATGCCTAGCA+TGG | 0.544626 | 4_1:+26160539 | Msa0542060:exon |
| GTGATAAAAGGACTTGATGA+AGG | 0.565095 | 4_1:+26162645 | Msa0542060:CDS |
| ACCAGGACTTGACGTGGATG+AGG | 0.572224 | 4_1:+26163087 | Msa0542060:CDS |
| TACAAAGTGGAAGCAGGAGA+GGG | 0.573806 | 4_1:-26160566 | None:intergenic |
| GGCTGCTAATTATGTTGCAA+TGG | 0.576500 | 4_1:+26162073 | Msa0542060:CDS |
| CATGATATACTATCGATGAC+AGG | 0.577750 | 4_1:-26163332 | None:intergenic |
| GGGTTGACTGCGTTCAGTCA+AGG | 0.578018 | 4_1:-26163134 | None:intergenic |
| GATATCCAACTGGTGGACTA+GGG | 0.580308 | 4_1:-26161551 | None:intergenic |
| AGGAGAGGGGAAGCCATGCT+AGG | 0.580475 | 4_1:-26160552 | None:intergenic |
| CTTTGAGGAGCAGTAAGAGA+AGG | 0.581278 | 4_1:-26160707 | None:intergenic |
| AAGTGAAGTCCACAGAGACA+AGG | 0.592596 | 4_1:+26160765 | Msa0542060:CDS |
| GTAAGTTTGGAATATGTACC+AGG | 0.597022 | 4_1:+26163070 | Msa0542060:CDS |
| AGTGCATTCCCTTGTCTCTG+TGG | 0.600039 | 4_1:-26160774 | None:intergenic |
| CAAGGCCCTAGTCCACCAGT+TGG | 0.601514 | 4_1:+26161546 | Msa0542060:CDS |
| AAAGGCCTTAATTCTGCACC+AGG | 0.603111 | 4_1:+26163007 | Msa0542060:CDS |
| CCTGATTCAGTAGTTACCAT+AGG | 0.608091 | 4_1:-26161495 | None:intergenic |
| CACACCTGATATCCAACTGG+TGG | 0.614939 | 4_1:-26161558 | None:intergenic |
| AAGGATATTAAAGTTGGGCA+AGG | 0.616109 | 4_1:+26161528 | Msa0542060:CDS |
| TTACAAAGTGGAAGCAGGAG+AGG | 0.616382 | 4_1:-26160567 | None:intergenic |
| AGTGAAGTCCACAGAGACAA+GGG | 0.625615 | 4_1:+26160766 | Msa0542060:CDS |
| ACAATTGTATAAGATAGTGA+TGG | 0.629046 | 4_1:-26163171 | None:intergenic |
| AGCCATGCTAGGCATATCCA+AGG | 0.638646 | 4_1:-26160541 | None:intergenic |
| TGCACCAGGAAGACCAAGGG+TGG | 0.644156 | 4_1:+26163021 | Msa0542060:CDS |
| ACAAAGTGGAAGCAGGAGAG+GGG | 0.648340 | 4_1:-26160565 | None:intergenic |
| TTCTGCACCAGGAAGACCAA+GGG | 0.663256 | 4_1:+26163018 | Msa0542060:CDS |
| ATAATAATAAGCAGAGAACA+GGG | 0.670910 | 4_1:+26163431 | Msa0542060:three_prime_UTR |
| TGAAAGTAGGAGGGAAACGT+CGG | 0.675740 | 4_1:+26162679 | Msa0542060:CDS |
| GGATGTAATATTGTGTCATG+TGG | 0.676551 | 4_1:-26160520 | None:intergenic |
| TGGATTCTCTGGTCTCCAAG+AGG | 0.680434 | 4_1:+26163353 | Msa0542060:three_prime_UTR |
| TTGACTGCGTTCAGTCAAGG+TGG | 0.698133 | 4_1:-26163131 | None:intergenic |
| ATTCTGCACCAGGAAGACCA+AGG | 0.707291 | 4_1:+26163017 | Msa0542060:CDS |
| ATATGTACCAGGACTTGACG+TGG | 0.731552 | 4_1:+26163081 | Msa0542060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTTATCTACTAAAATT+AGG | + | chr4_1:26161070-26161089 | Msa0542060:intron | 10.0% |
| !! | AATATATTAATCATTTGATA+AGG | - | chr4_1:26161926-26161945 | None:intergenic | 10.0% |
| !! | ATATTAACATAATAATCAAT+TGG | + | chr4_1:26162259-26162278 | Msa0542060:intron | 10.0% |
| !!! | TATTTTTCAAAAAACATTTA+AGG | - | chr4_1:26162555-26162574 | None:intergenic | 10.0% |
| !!! | TTTTAGTAGATAAATATTGA+AGG | - | chr4_1:26161068-26161087 | None:intergenic | 15.0% |
| !!! | ATATAAATTTAGAGTATCAT+AGG | - | chr4_1:26161725-26161744 | None:intergenic | 15.0% |
| !!! | TTTTATATAGATTCTACTTG+TGG | + | chr4_1:26160677-26160696 | Msa0542060:intron | 20.0% |
| !!! | TATGTGACTAAAAATGTTTT+CGG | + | chr4_1:26161117-26161136 | Msa0542060:intron | 20.0% |
| !!! | ATGTTTTCGGTTAAAAAAAT+TGG | + | chr4_1:26161130-26161149 | Msa0542060:intron | 20.0% |
| !!! | TGTTTTCGGTTAAAAAAATT+GGG | + | chr4_1:26161131-26161150 | Msa0542060:intron | 20.0% |
| !! | TCATTAACTATCGATATTAA+TGG | - | chr4_1:26161445-26161464 | None:intergenic | 20.0% |
| !! | AATACAAGGATATTAAAGTT+GGG | + | chr4_1:26161523-26161542 | Msa0542060:CDS | 20.0% |
| !! | AAGATACAAATCAAGTATTT+AGG | - | chr4_1:26161674-26161693 | None:intergenic | 20.0% |
| !!! | AAATACTTGATTTGTATCTT+AGG | + | chr4_1:26161674-26161693 | Msa0542060:intron | 20.0% |
| !!! | TACTTGTTTCTTTCTAAATT+TGG | - | chr4_1:26162285-26162304 | None:intergenic | 20.0% |
| !!! | TATTGTAATTTGTAATGCTT+TGG | + | chr4_1:26162310-26162329 | Msa0542060:intron | 20.0% |
| !!! | TACAATTGTTAATTCTTTTG+AGG | + | chr4_1:26163185-26163204 | Msa0542060:three_prime_UTR | 20.0% |
| ! | ATGATGTTATTGTTTGCAAA+TGG | - | chr4_1:26160498-26160517 | None:intergenic | 25.0% |
| !!! | CATAATTTTGGTTTTTCTTC+TGG | - | chr4_1:26160911-26160930 | None:intergenic | 25.0% |
| !! | CAAGTTTCATCACATAATTT+TGG | - | chr4_1:26160923-26160942 | None:intergenic | 25.0% |
| ! | ATTTGTGAAGAACCTTATAA+TGG | - | chr4_1:26161242-26161261 | None:intergenic | 25.0% |
| ! | CAATACAAGGATATTAAAGT+TGG | + | chr4_1:26161522-26161541 | Msa0542060:CDS | 25.0% |
| ! | AGTAATCCTATATCATTATC+AGG | - | chr4_1:26161801-26161820 | None:intergenic | 25.0% |
| ! | GATTGACAGAAATTTGTAAT+CGG | - | chr4_1:26162131-26162150 | None:intergenic | 25.0% |
| !! | AGAAGTACACTATATTTACA+TGG | - | chr4_1:26162806-26162825 | None:intergenic | 25.0% |
| ! | TAAGTACTTAATTCTAACGT+TGG | + | chr4_1:26162942-26162961 | Msa0542060:intron | 25.0% |
| ! | AAACTTACATCAAATACTAC+TGG | - | chr4_1:26163058-26163077 | None:intergenic | 25.0% |
| ! | AGTAGTATTTGATGTAAGTT+TGG | + | chr4_1:26163057-26163076 | Msa0542060:CDS | 25.0% |
| !! | TGATGGTGATAAATTGAATT+GGG | - | chr4_1:26163157-26163176 | None:intergenic | 25.0% |
| ! | ACAATTGTATAAGATAGTGA+TGG | - | chr4_1:26163174-26163193 | None:intergenic | 25.0% |
| ! | TTCAATTTCCATACCTAAAA+TGG | + | chr4_1:26163302-26163321 | Msa0542060:three_prime_UTR | 25.0% |
| !!! | GTTTAATACCATTTTAGGTA+TGG | - | chr4_1:26163313-26163332 | None:intergenic | 25.0% |
| ! | ATAATAATAAGCAGAGAACA+GGG | + | chr4_1:26163431-26163450 | Msa0542060:three_prime_UTR | 25.0% |
| GTTATTGTTTGCAAATGGAA+TGG | - | chr4_1:26160493-26160512 | None:intergenic | 30.0% | |
| ATGACACAATATTACATCCT+TGG | + | chr4_1:26160524-26160543 | Msa0542060:five_prime_UTR | 30.0% | |
| CAGTATTATTTATGCATCGT+TGG | - | chr4_1:26160622-26160641 | None:intergenic | 30.0% | |
| !!! | AATTTTGGTTTTTCTTCTGG+TGG | - | chr4_1:26160908-26160927 | None:intergenic | 30.0% |
| AGAAAGAGCTTGAAAATGTA+TGG | + | chr4_1:26160945-26160964 | Msa0542060:intron | 30.0% | |
| AAAACTTGCAATGAAATGAC+AGG | - | chr4_1:26161307-26161326 | None:intergenic | 30.0% | |
| ! | ACTGAGTATTTTATGCATGA+AGG | + | chr4_1:26161470-26161489 | Msa0542060:intron | 30.0% |
| !! | CATTGACTGCATTTTTGAAA+TGG | - | chr4_1:26161629-26161648 | None:intergenic | 30.0% |
| ! | TTCAGTATTTTCTACGTAGA+AGG | - | chr4_1:26161757-26161776 | None:intergenic | 30.0% |
| ! | GGTACTGAAATCATCAATAT+TGG | - | chr4_1:26161780-26161799 | None:intergenic | 30.0% |
| ! | TCAGTACCTGATAATGATAT+AGG | + | chr4_1:26161792-26161811 | Msa0542060:intron | 30.0% |
| ! | CTTTAGCTAGTTTAGATTGA+AGG | - | chr4_1:26161893-26161912 | None:intergenic | 30.0% |
| ! | TTTTCATGTGCTTATCTGAT+AGG | + | chr4_1:26162049-26162068 | Msa0542060:intron | 30.0% |
| CTATCAAATATTTGTCCAGA+TGG | - | chr4_1:26162101-26162120 | None:intergenic | 30.0% | |
| CATCTGGACAAATATTTGAT+AGG | + | chr4_1:26162099-26162118 | Msa0542060:CDS | 30.0% | |
| AATCATGCCTAATAAGATGT+TGG | + | chr4_1:26162230-26162249 | Msa0542060:intron | 30.0% | |
| AACTGAAAAAGGAATGATCA+AGG | - | chr4_1:26162344-26162363 | None:intergenic | 30.0% | |
| AGATGACAGAAAACTGAAAA+AGG | - | chr4_1:26162355-26162374 | None:intergenic | 30.0% | |
| ! | TTTCTGTCATCTTTCGATTT+TGG | + | chr4_1:26162363-26162382 | Msa0542060:intron | 30.0% |
| !!! | TTTTTGAAGCTGTTGTCTTT+GGG | + | chr4_1:26162386-26162405 | Msa0542060:intron | 30.0% |
| ATAACTGAGCATTCTAATGA+AGG | - | chr4_1:26162413-26162432 | None:intergenic | 30.0% | |
| ATGAGCTGTAAAATTGGAAA+GGG | - | chr4_1:26162483-26162502 | None:intergenic | 30.0% | |
| AATGAGCTGTAAAATTGGAA+AGG | - | chr4_1:26162484-26162503 | None:intergenic | 30.0% | |
| ! | TTTCCAATTTTACAGCTCAT+TGG | + | chr4_1:26162483-26162502 | Msa0542060:intron | 30.0% |
| TGAAAGGATTATCAAACACT+AGG | - | chr4_1:26162590-26162609 | None:intergenic | 30.0% | |
| TAATCCTTTCAAAGACTAAC+TGG | + | chr4_1:26162599-26162618 | Msa0542060:intron | 30.0% | |
| !! | AATACCAGTTAGTCTTTGAA+AGG | - | chr4_1:26162606-26162625 | None:intergenic | 30.0% |
| TTTATCACCTGATATCTCAT+CGG | - | chr4_1:26162633-26162652 | None:intergenic | 30.0% | |
| ATGAGATATCAGGTGATAAA+AGG | + | chr4_1:26162633-26162652 | Msa0542060:intron | 30.0% | |
| !! | GTCAATGCACATTTTAAGTA+TGG | - | chr4_1:26162852-26162871 | None:intergenic | 30.0% |
| ! | AATGTGCATTGACAACATAA+TGG | + | chr4_1:26162859-26162878 | Msa0542060:intron | 30.0% |
| TGACAACATAATGGTGTAAA+AGG | + | chr4_1:26162868-26162887 | Msa0542060:intron | 30.0% | |
| CTGACAGTTTATTTACAGAT+TGG | + | chr4_1:26162919-26162938 | Msa0542060:intron | 30.0% | |
| ! | GTGATGGTGATAAATTGAAT+TGG | - | chr4_1:26163158-26163177 | None:intergenic | 30.0% |
| ! | GACAGGTTTAATACCATTTT+AGG | - | chr4_1:26163318-26163337 | None:intergenic | 30.0% |
| ATAGTATATCATGGATTCTC+TGG | + | chr4_1:26163342-26163361 | Msa0542060:three_prime_UTR | 30.0% | |
| TTAAGAGATCATATTCCTCT+TGG | - | chr4_1:26163371-26163390 | None:intergenic | 30.0% | |
| TCTCTGCTTATTATTATGGT+TGG | - | chr4_1:26163428-26163447 | None:intergenic | 30.0% | |
| CTGTTCTCTGCTTATTATTA+TGG | - | chr4_1:26163432-26163451 | None:intergenic | 30.0% | |
| CATAATAATAAGCAGAGAAC+AGG | + | chr4_1:26163430-26163449 | Msa0542060:three_prime_UTR | 30.0% | |
| GGATGTAATATTGTGTCATG+TGG | - | chr4_1:26160523-26160542 | None:intergenic | 35.0% | |
| AAGTGAAAGGACTTACAAAG+TGG | - | chr4_1:26160582-26160601 | None:intergenic | 35.0% | |
| TGAGGAAAAGAGAAAGTGAA+AGG | - | chr4_1:26160595-26160614 | None:intergenic | 35.0% | |
| TTCTCAACAGAAATGCTTTG+AGG | - | chr4_1:26160725-26160744 | None:intergenic | 35.0% | |
| AAGAAAGTCTCTACGTGAAT+TGG | - | chr4_1:26160819-26160838 | None:intergenic | 35.0% | |
| AATTCACGTAGAGACTTTCT+TGG | + | chr4_1:26160818-26160837 | Msa0542060:CDS | 35.0% | |
| !! | GACTTTCTTGGATTAGCATT+AGG | + | chr4_1:26160830-26160849 | Msa0542060:CDS | 35.0% |
| CATTAGCAGCATCAAATGAA+TGG | - | chr4_1:26160874-26160893 | None:intergenic | 35.0% | |
| CATTCATTTGATGCTGCTAA+TGG | + | chr4_1:26160872-26160891 | Msa0542060:CDS | 35.0% | |
| TCACAGTTAAGGCATAGAAA+GGG | - | chr4_1:26160986-26161005 | None:intergenic | 35.0% | |
| ATCACAGTTAAGGCATAGAA+AGG | - | chr4_1:26160987-26161006 | None:intergenic | 35.0% | |
| GGAGACATTAATCACAGTTA+AGG | - | chr4_1:26160997-26161016 | None:intergenic | 35.0% | |
| ATTCTGACTTCTGAGCAATA+TGG | - | chr4_1:26161018-26161037 | None:intergenic | 35.0% | |
| CTCTTAAAACGTTTGACGAA+AGG | + | chr4_1:26161212-26161231 | Msa0542060:intron | 35.0% | |
| ACGAAAGGACTTCCATTATA+AGG | + | chr4_1:26161227-26161246 | Msa0542060:intron | 35.0% | |
| !! | TTTATGCATGAAGGTACCTA+TGG | + | chr4_1:26161479-26161498 | Msa0542060:intron | 35.0% |
| TGAATCAGGTTTGCAATACA+AGG | + | chr4_1:26161509-26161528 | Msa0542060:CDS | 35.0% | |
| AAGGATATTAAAGTTGGGCA+AGG | + | chr4_1:26161528-26161547 | Msa0542060:CDS | 35.0% | |
| !!! | TGACTGCATTTTTGAAATGG+TGG | - | chr4_1:26161626-26161645 | None:intergenic | 35.0% |
| GCATCAATCTCGTTCAAAAT+TGG | - | chr4_1:26161652-26161671 | None:intergenic | 35.0% | |
| AGTTTAGATTGAAGGAAGCA+AGG | - | chr4_1:26161885-26161904 | None:intergenic | 35.0% | |
| TGACAGAAATTTGTAATCGG+CGG | - | chr4_1:26162128-26162147 | None:intergenic | 35.0% | |
| ATACAACAGCAAACATCACT+TGG | - | chr4_1:26162181-26162200 | None:intergenic | 35.0% | |
| TCACACTCCAACATCTTATT+AGG | - | chr4_1:26162240-26162259 | None:intergenic | 35.0% | |
| !!! | GTTTTTGAAGCTGTTGTCTT+TGG | + | chr4_1:26162385-26162404 | Msa0542060:intron | 35.0% |
| TGTATGCACTGTAATGAGAA+TGG | + | chr4_1:26162434-26162453 | Msa0542060:intron | 35.0% | |
| TCTCCAATGAGCTGTAAAAT+TGG | - | chr4_1:26162489-26162508 | None:intergenic | 35.0% | |
| ! | TTTTACAGCTCATTGGAGAA+AGG | + | chr4_1:26162490-26162509 | Msa0542060:intron | 35.0% |
| TTATCACCTGATATCTCATC+GGG | - | chr4_1:26162632-26162651 | None:intergenic | 35.0% | |
| GTGATAAAAGGACTTGATGA+AGG | + | chr4_1:26162645-26162664 | Msa0542060:CDS | 35.0% | |
| ! | TTTTGAGCATGAAAGTAGGA+GGG | + | chr4_1:26162670-26162689 | Msa0542060:CDS | 35.0% |
| !! | GTTTTGAATCTTGCAATGCT+GGG | - | chr4_1:26162758-26162777 | None:intergenic | 35.0% |
| !! | TGTTTTGAATCTTGCAATGC+TGG | - | chr4_1:26162759-26162778 | None:intergenic | 35.0% |
| !! | GTGTACTTCTAGTTTCTCAA+TGG | + | chr4_1:26162816-26162835 | Msa0542060:intron | 35.0% |
| !! | TTCTTTTCTTGTTTCGCAGT+TGG | + | chr4_1:26162976-26162995 | Msa0542060:intron | 35.0% |
| TCAAATACTACTGGACTGTT+TGG | - | chr4_1:26163049-26163068 | None:intergenic | 35.0% | |
| ! | GTAAGTTTGGAATATGTACC+AGG | + | chr4_1:26163070-26163089 | Msa0542060:CDS | 35.0% |
| AGATTCAGCTTCAATGTACT+TGG | - | chr4_1:26163267-26163286 | None:intergenic | 35.0% | |
| CATGATATACTATCGATGAC+AGG | - | chr4_1:26163335-26163354 | None:intergenic | 35.0% | |
| CTGTCATCGATAGTATATCA+TGG | + | chr4_1:26163333-26163352 | Msa0542060:three_prime_UTR | 35.0% | |
| ! | CTTAATTCTACCCGATCTTT+TGG | + | chr4_1:26163386-26163405 | Msa0542060:three_prime_UTR | 35.0% |
| TTATGCATCGTTGGATAGTG+AGG | - | chr4_1:26160613-26160632 | None:intergenic | 40.0% | |
| ! | AGCTTCTGTCAGGGAATTTT+TGG | - | chr4_1:26161337-26161356 | None:intergenic | 40.0% |
| ACTGAACAAAGCTTCTGTCA+GGG | - | chr4_1:26161346-26161365 | None:intergenic | 40.0% | |
| CCTGATTCAGTAGTTACCAT+AGG | - | chr4_1:26161498-26161517 | None:intergenic | 40.0% | |
| CCTATGGTAACTACTGAATC+AGG | + | chr4_1:26161495-26161514 | Msa0542060:CDS | 40.0% | |
| TTACACACCTGATATCCAAC+TGG | - | chr4_1:26161564-26161583 | None:intergenic | 40.0% | |
| TAGATTGAAGGAAGCAAGGA+CGG | - | chr4_1:26161881-26161900 | None:intergenic | 40.0% | |
| AACAATACACATGCTGACAG+AGG | - | chr4_1:26162005-26162024 | None:intergenic | 40.0% | |
| TCATGTGCTTATCTGATAGG+TGG | + | chr4_1:26162052-26162071 | Msa0542060:intron | 40.0% | |
| GGCTGCTAATTATGTTGCAA+TGG | + | chr4_1:26162073-26162092 | Msa0542060:CDS | 40.0% | |
| TATGTTGCAATGGTTCCATC+TGG | + | chr4_1:26162083-26162102 | Msa0542060:CDS | 40.0% | |
| CAACGCGAAAAATGTAAAGC+TGG | - | chr4_1:26162516-26162535 | None:intergenic | 40.0% | |
| ! | CAGCTTTACATTTTTCGCGT+TGG | + | chr4_1:26162514-26162533 | Msa0542060:CDS | 40.0% |
| ! | TACATTTTTCGCGTTGGATC+TGG | + | chr4_1:26162520-26162539 | Msa0542060:CDS | 40.0% |
| ATTCAACCCGATGAGATATC+AGG | + | chr4_1:26162623-26162642 | Msa0542060:intron | 40.0% | |
| CTCCTACTTTCATGCTCAAA+AGG | - | chr4_1:26162671-26162690 | None:intergenic | 40.0% | |
| ! | CTTTTGAGCATGAAAGTAGG+AGG | + | chr4_1:26162669-26162688 | Msa0542060:CDS | 40.0% |
| GTGCAGAATTAAGGCCTTTA+GGG | - | chr4_1:26163006-26163025 | None:intergenic | 40.0% | |
| ! | TACCCGATCTTTTGGTCAAA+TGG | + | chr4_1:26163394-26163413 | Msa0542060:three_prime_UTR | 40.0% |
| CACCATTTGACCAAAAGATC+GGG | - | chr4_1:26163399-26163418 | None:intergenic | 40.0% | |
| CCACCATTTGACCAAAAGAT+CGG | - | chr4_1:26163400-26163419 | None:intergenic | 40.0% | |
| GAGAACAGGGAACATGTTAA+CGG | + | chr4_1:26163444-26163463 | Msa0542060:three_prime_UTR | 40.0% | |
| ATCCTTGGATATGCCTAGCA+TGG | + | chr4_1:26160539-26160558 | Msa0542060:exon | 45.0% | |
| TACAAAGTGGAAGCAGGAGA+GGG | - | chr4_1:26160569-26160588 | None:intergenic | 45.0% | |
| TTACAAAGTGGAAGCAGGAG+AGG | - | chr4_1:26160570-26160589 | None:intergenic | 45.0% | |
| AGGACTTACAAAGTGGAAGC+AGG | - | chr4_1:26160575-26160594 | None:intergenic | 45.0% | |
| ! | CTTTGAGGAGCAGTAAGAGA+AGG | - | chr4_1:26160710-26160729 | None:intergenic | 45.0% |
| AAGTGAAGTCCACAGAGACA+AGG | + | chr4_1:26160765-26160784 | Msa0542060:CDS | 45.0% | |
| AGTGAAGTCCACAGAGACAA+GGG | + | chr4_1:26160766-26160785 | Msa0542060:CDS | 45.0% | |
| TTTGATGCTGCTAATGGAGC+TGG | + | chr4_1:26160878-26160897 | Msa0542060:CDS | 45.0% | |
| TTGAAGGTGACACAACTGCA+TGG | - | chr4_1:26161052-26161071 | None:intergenic | 45.0% | |
| CACTGAACAAAGCTTCTGTC+AGG | - | chr4_1:26161347-26161366 | None:intergenic | 45.0% | |
| !! | CTGACAGAAGCTTTGTTCAG+TGG | + | chr4_1:26161345-26161364 | Msa0542060:intron | 45.0% |
| !! | GATATCCAACTGGTGGACTA+GGG | - | chr4_1:26161554-26161573 | None:intergenic | 45.0% |
| !! | TGATATCCAACTGGTGGACT+AGG | - | chr4_1:26161555-26161574 | None:intergenic | 45.0% |
| TAGTCCACCAGTTGGATATC+AGG | + | chr4_1:26161554-26161573 | Msa0542060:CDS | 45.0% | |
| AGATTGAAGGAAGCAAGGAC+GGG | - | chr4_1:26161880-26161899 | None:intergenic | 45.0% | |
| ! | GGCCTTTTGAGCATGAAAGT+AGG | + | chr4_1:26162666-26162685 | Msa0542060:CDS | 45.0% |
| TGAAAGTAGGAGGGAAACGT+CGG | + | chr4_1:26162679-26162698 | Msa0542060:CDS | 45.0% | |
| AGACAGAAGCTTACTGATCC+AGG | - | chr4_1:26162714-26162733 | None:intergenic | 45.0% | |
| GGTGCAGAATTAAGGCCTTT+AGG | - | chr4_1:26163007-26163026 | None:intergenic | 45.0% | |
| AAAGGCCTTAATTCTGCACC+AGG | + | chr4_1:26163007-26163026 | Msa0542060:CDS | 45.0% | |
| GTCTTCCTGGTGCAGAATTA+AGG | - | chr4_1:26163015-26163034 | None:intergenic | 45.0% | |
| ATATGTACCAGGACTTGACG+TGG | + | chr4_1:26163081-26163100 | Msa0542060:CDS | 45.0% | |
| ! | CCGATCTTTTGGTCAAATGG+TGG | + | chr4_1:26163397-26163416 | Msa0542060:three_prime_UTR | 45.0% |
| AGCCATGCTAGGCATATCCA+AGG | - | chr4_1:26160544-26160563 | None:intergenic | 50.0% | |
| ACAAAGTGGAAGCAGGAGAG+GGG | - | chr4_1:26160568-26160587 | None:intergenic | 50.0% | |
| AGTGCATTCCCTTGTCTCTG+TGG | - | chr4_1:26160777-26160796 | None:intergenic | 50.0% | |
| CACACCTGATATCCAACTGG+TGG | - | chr4_1:26161561-26161580 | None:intergenic | 50.0% | |
| GCGTTCAAGGGAAACTGAAC+AGG | - | chr4_1:26161597-26161616 | None:intergenic | 50.0% | |
| GGAAAGGGTCATACTCACAC+AGG | - | chr4_1:26162468-26162487 | None:intergenic | 50.0% | |
| ! | TTTTCGCGTTGGATCTGGTC+AGG | + | chr4_1:26162525-26162544 | Msa0542060:CDS | 50.0% |
| ! | AAACGTCGGCTGTACATACC+TGG | + | chr4_1:26162693-26162712 | Msa0542060:CDS | 50.0% |
| TCGCAGTTGGCATTCCCTAA+AGG | + | chr4_1:26162989-26163008 | Msa0542060:intron | 50.0% | |
| ATTCTGCACCAGGAAGACCA+AGG | + | chr4_1:26163017-26163036 | Msa0542060:CDS | 50.0% | |
| TTCTGCACCAGGAAGACCAA+GGG | + | chr4_1:26163018-26163037 | Msa0542060:CDS | 50.0% | |
| TGCGTTCAGTCAAGGTGGAA+TGG | - | chr4_1:26163129-26163148 | None:intergenic | 50.0% | |
| TTGACTGCGTTCAGTCAAGG+TGG | - | chr4_1:26163134-26163153 | None:intergenic | 50.0% | |
| TGGATTCTCTGGTCTCCAAG+AGG | + | chr4_1:26163353-26163372 | Msa0542060:three_prime_UTR | 50.0% | |
| TGGTGGAGACGAGCGTTCAA+GGG | - | chr4_1:26161609-26161628 | None:intergenic | 55.0% | |
| ! | ATGGTGGAGACGAGCGTTCA+AGG | - | chr4_1:26161610-26161629 | None:intergenic | 55.0% |
| ACCAGGACTTGACGTGGATG+AGG | + | chr4_1:26163087-26163106 | Msa0542060:CDS | 55.0% | |
| TCCTCATCCACGTCAAGTCC+TGG | - | chr4_1:26163091-26163110 | None:intergenic | 55.0% | |
| GGGTTGACTGCGTTCAGTCA+AGG | - | chr4_1:26163137-26163156 | None:intergenic | 55.0% | |
| AGGAGAGGGGAAGCCATGCT+AGG | - | chr4_1:26160555-26160574 | None:intergenic | 60.0% | |
| CAAGGCCCTAGTCCACCAGT+TGG | + | chr4_1:26161546-26161565 | Msa0542060:CDS | 60.0% | |
| TGCACCAGGAAGACCAAGGG+TGG | + | chr4_1:26163021-26163040 | Msa0542060:CDS | 60.0% | |
| ! | GGACTGTTTGGAGCCACCCT+TGG | - | chr4_1:26163037-26163056 | None:intergenic | 60.0% |
| ! | GGAGCCACCCTTGGTCTTCC+TGG | - | chr4_1:26163028-26163047 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 26160469 | 26163474 | 26160469 | ID=Msa0542060;Name=Msa0542060 |
| chr4_1 | mRNA | 26160469 | 26163474 | 26160469 | ID=Msa0542060-mRNA-1;Parent=Msa0542060;Name=Msa0542060-mRNA-1;_AED=0.03;_eAED=0.03;_QI=80|1|1|1|1|1|7|360|229 |
| chr4_1 | exon | 26160469 | 26160585 | 26160469 | ID=Msa0542060-mRNA-1:exon:7077;Parent=Msa0542060-mRNA-1 |
| chr4_1 | exon | 26160687 | 26160961 | 26160687 | ID=Msa0542060-mRNA-1:exon:7078;Parent=Msa0542060-mRNA-1 |
| chr4_1 | exon | 26161492 | 26161575 | 26161492 | ID=Msa0542060-mRNA-1:exon:7079;Parent=Msa0542060-mRNA-1 |
| chr4_1 | exon | 26162071 | 26162120 | 26162071 | ID=Msa0542060-mRNA-1:exon:7080;Parent=Msa0542060-mRNA-1 |
| chr4_1 | exon | 26162498 | 26162546 | 26162498 | ID=Msa0542060-mRNA-1:exon:7081;Parent=Msa0542060-mRNA-1 |
| chr4_1 | exon | 26162645 | 26162719 | 26162645 | ID=Msa0542060-mRNA-1:exon:7082;Parent=Msa0542060-mRNA-1 |
| chr4_1 | exon | 26162995 | 26163474 | 26162995 | ID=Msa0542060-mRNA-1:exon:7083;Parent=Msa0542060-mRNA-1 |
| chr4_1 | five_prime_UTR | 26160469 | 26160548 | 26160469 | ID=Msa0542060-mRNA-1:five_prime_utr;Parent=Msa0542060-mRNA-1 |
| chr4_1 | CDS | 26160549 | 26160585 | 26160549 | ID=Msa0542060-mRNA-1:cds;Parent=Msa0542060-mRNA-1 |
| chr4_1 | CDS | 26160687 | 26160961 | 26160687 | ID=Msa0542060-mRNA-1:cds;Parent=Msa0542060-mRNA-1 |
| chr4_1 | CDS | 26161492 | 26161575 | 26161492 | ID=Msa0542060-mRNA-1:cds;Parent=Msa0542060-mRNA-1 |
| chr4_1 | CDS | 26162071 | 26162120 | 26162071 | ID=Msa0542060-mRNA-1:cds;Parent=Msa0542060-mRNA-1 |
| chr4_1 | CDS | 26162498 | 26162546 | 26162498 | ID=Msa0542060-mRNA-1:cds;Parent=Msa0542060-mRNA-1 |
| chr4_1 | CDS | 26162645 | 26162719 | 26162645 | ID=Msa0542060-mRNA-1:cds;Parent=Msa0542060-mRNA-1 |
| chr4_1 | CDS | 26162995 | 26163114 | 26162995 | ID=Msa0542060-mRNA-1:cds;Parent=Msa0542060-mRNA-1 |
| chr4_1 | three_prime_UTR | 26163115 | 26163474 | 26163115 | ID=Msa0542060-mRNA-1:three_prime_utr;Parent=Msa0542060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
