Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0645800 | XP_003606829.2 | 97.817 | 229 | 5 | 0 | 1 | 229 | 1 | 229 | 6.76e-161 | 454 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0645800 | sp|O22870|FK163_ARATH | 68.122 | 229 | 67 | 2 | 1 | 229 | 1 | 223 | 8.55e-100 | 292 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0645800 | G7JEW8 | 97.817 | 229 | 5 | 0 | 1 | 229 | 1 | 229 | 3.23e-161 | 454 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0027250 | Msa0645800 | 0.878530 | 2.606962e-69 | -8.615850e-47 |
Msa0075160 | Msa0645800 | 0.880080 | 7.365604e-70 | -8.615850e-47 |
Msa0606830 | Msa0645800 | -0.806546 | 7.804521e-50 | -8.615850e-47 |
Msa0645800 | Msa0654410 | 0.833130 | 6.364078e-56 | -8.615850e-47 |
Msa0645800 | Msa0654490 | 0.807773 | 4.290304e-50 | -8.615850e-47 |
Msa0645800 | Msa0685110 | 0.991307 | 5.827817e-187 | -8.615850e-47 |
Msa0645800 | Msa0685500 | 0.990822 | 1.701200e-184 | -8.615850e-47 |
Msa0645800 | Msa0719900 | 0.869251 | 3.562475e-66 | -8.615850e-47 |
Msa0645800 | Msa0784780 | 0.804284 | 2.325972e-49 | -8.615850e-47 |
Msa0645800 | Msa0804690 | 0.856744 | 2.615444e-62 | -8.615850e-47 |
Msa0645800 | Msa0858250 | 0.812599 | 3.910266e-51 | -8.615850e-47 |
Msa0645800 | Msa0882480 | 0.808755 | 2.650269e-50 | -8.615850e-47 |
Msa0645800 | Msa0922100 | 0.879787 | 9.369043e-70 | -8.615850e-47 |
Msa0645800 | Msa0960880 | 0.826854 | 2.158783e-54 | -8.615850e-47 |
Msa0645800 | Msa0994250 | 0.872967 | 2.115574e-67 | -8.615850e-47 |
Msa0645800 | Msa1163190 | 0.892767 | 1.171307e-74 | -8.615850e-47 |
Msa0645800 | Msa1173800 | -0.873809 | 1.102632e-67 | -8.615850e-47 |
Msa0645800 | Msa1238310 | -0.849286 | 3.564118e-60 | -8.615850e-47 |
Msa0645800 | Msa1256060 | -0.808126 | 3.610037e-50 | -8.615850e-47 |
Msa0123000 | Msa0645800 | 0.868618 | 5.713147e-66 | -8.615850e-47 |
Msa0126000 | Msa0645800 | 0.835485 | 1.632364e-56 | -8.615850e-47 |
Msa0167500 | Msa0645800 | 0.895886 | 6.253073e-76 | -8.615850e-47 |
Msa0168410 | Msa0645800 | 0.842386 | 2.669517e-58 | -8.615850e-47 |
Msa0173050 | Msa0645800 | -0.803955 | 2.722549e-49 | -8.615850e-47 |
Msa0386280 | Msa0645800 | 0.815691 | 8.121229e-52 | -8.615850e-47 |
Msa0280250 | Msa0645800 | -0.806095 | 9.713036e-50 | -8.615850e-47 |
Msa0299530 | Msa0645800 | 0.840508 | 8.337240e-58 | -8.615850e-47 |
Msa0542060 | Msa0645800 | 0.990045 | 8.325523e-181 | -8.615850e-47 |
Msa0559650 | Msa0645800 | 0.810091 | 1.369563e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0645800 | MtrunA17_Chr4g0033841 | 97.817 | 229 | 5 | 0 | 1 | 229 | 1 | 229 | 6.22e-165 | 454 |
Msa0645800 | MtrunA17_Chr8g0382711 | 27.568 | 185 | 117 | 4 | 41 | 218 | 29 | 203 | 1.14e-17 | 78.6 |
Msa0645800 | MtrunA17_Chr4g0052911 | 33.918 | 171 | 92 | 5 | 55 | 218 | 80 | 236 | 3.16e-16 | 75.1 |
Msa0645800 | MtrunA17_Chr8g0377771 | 40.367 | 109 | 60 | 3 | 111 | 218 | 36 | 140 | 3.77e-16 | 77.0 |
Msa0645800 | MtrunA17_Chr8g0335211 | 40.449 | 89 | 53 | 0 | 108 | 196 | 95 | 183 | 7.14e-15 | 70.9 |
Msa0645800 | MtrunA17_Chr8g0339141 | 40.860 | 93 | 51 | 2 | 126 | 218 | 54 | 142 | 7.19e-14 | 70.1 |
Msa0645800 | MtrunA17_Chr8g0339171 | 38.000 | 100 | 58 | 2 | 130 | 229 | 50 | 145 | 4.63e-13 | 64.7 |
Msa0645800 | MtrunA17_Chr5g0396231 | 40.678 | 118 | 55 | 5 | 112 | 223 | 393 | 501 | 1.44e-12 | 66.2 |
Msa0645800 | MtrunA17_Chr7g0255551 | 36.559 | 93 | 55 | 2 | 126 | 218 | 35 | 123 | 8.04e-12 | 64.3 |
Msa0645800 | MtrunA17_Chr7g0234801 | 36.735 | 98 | 57 | 3 | 122 | 218 | 43 | 136 | 3.79e-11 | 62.0 |
Msa0645800 | MtrunA17_Chr7g0214751 | 35.780 | 109 | 58 | 4 | 108 | 205 | 97 | 204 | 6.57e-11 | 60.5 |
Msa0645800 | MtrunA17_Chr1g0179681 | 37.815 | 119 | 58 | 5 | 109 | 218 | 129 | 240 | 9.33e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0645800 | AT2G43560.1 | 68.122 | 229 | 67 | 2 | 1 | 229 | 1 | 223 | 8.70e-101 | 292 |
Msa0645800 | AT2G43560.2 | 82.424 | 165 | 29 | 0 | 65 | 229 | 3 | 167 | 1.08e-93 | 272 |
Msa0645800 | AT5G45680.1 | 37.500 | 128 | 71 | 3 | 101 | 221 | 80 | 205 | 9.54e-18 | 79.0 |
Msa0645800 | AT4G39710.1 | 37.190 | 121 | 68 | 3 | 111 | 223 | 93 | 213 | 2.93e-16 | 75.1 |
Msa0645800 | AT4G39710.3 | 37.190 | 121 | 68 | 3 | 111 | 223 | 93 | 213 | 2.93e-16 | 75.1 |
Msa0645800 | AT5G48580.1 | 40.449 | 89 | 49 | 2 | 130 | 218 | 52 | 136 | 4.65e-14 | 68.2 |
Msa0645800 | AT3G60370.1 | 36.937 | 111 | 69 | 1 | 87 | 196 | 94 | 204 | 5.16e-14 | 69.3 |
Msa0645800 | AT3G25220.1 | 39.362 | 94 | 53 | 2 | 130 | 223 | 52 | 141 | 7.09e-14 | 67.4 |
Msa0645800 | AT3G60370.2 | 36.937 | 111 | 69 | 1 | 87 | 196 | 123 | 233 | 7.74e-14 | 69.3 |
Msa0645800 | AT5G05420.1 | 43.333 | 90 | 44 | 3 | 130 | 218 | 56 | 139 | 3.07e-13 | 65.5 |
Msa0645800 | AT3G25230.1 | 36.697 | 109 | 64 | 3 | 111 | 218 | 37 | 141 | 4.55e-12 | 65.5 |
Msa0645800 | AT3G25230.2 | 36.697 | 109 | 64 | 3 | 111 | 218 | 37 | 141 | 5.32e-12 | 65.1 |
Msa0645800 | AT5G48570.1 | 36.283 | 113 | 67 | 3 | 107 | 218 | 41 | 149 | 2.96e-11 | 62.8 |
Msa0645800 | AT4G25340.1 | 38.182 | 110 | 60 | 5 | 112 | 218 | 369 | 473 | 3.19e-11 | 62.8 |
Find 85 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCAATTTCCATACCTAAAA+TGG | 0.140163 | 4_3:+51241615 | Msa0645800:three_prime_UTR |
GGAGCCACCCTTGGTCTTCC+TGG | 0.209095 | 4_3:-51241338 | None:intergenic |
CAAGTTTCATCACATAATTT+TGG | 0.254636 | 4_3:-51239227 | None:intergenic |
GTGCAGAATTAAGGCCTTTA+GGG | 0.275774 | 4_3:-51241316 | None:intergenic |
CATTCATTTGATGCTGCTAA+TGG | 0.284118 | 4_3:+51239179 | Msa0645800:CDS |
GGTGCAGAATTAAGGCCTTT+AGG | 0.289156 | 4_3:-51241317 | None:intergenic |
GTCTTCCTGGTGCAGAATTA+AGG | 0.291862 | 4_3:-51241325 | None:intergenic |
CAAACTAGACAAACTAGATT+TGG | 0.295021 | 4_3:+51238770 | None:intergenic |
AATTCACGTAGAGACTTTCT+TGG | 0.312447 | 4_3:+51239125 | Msa0645800:CDS |
CTTTATTCTACCCGATCTTT+TGG | 0.316606 | 4_3:+51241699 | Msa0645800:three_prime_UTR |
ATGAGATATCAGGTGATAAA+AGG | 0.326010 | 4_3:+51240946 | Msa0645800:intron |
CATAATAATAAGCAGAAAAC+AGG | 0.327262 | 4_3:+51241743 | Msa0645800:three_prime_UTR |
AGTAGTATTTGATGTAAGTT+TGG | 0.332631 | 4_3:+51241370 | Msa0645800:CDS |
TAGTCCACCAGTTGGATATC+AGG | 0.360762 | 4_3:+51239867 | Msa0645800:CDS |
AAGAAAGTCTCTACGTGAAT+TGG | 0.368565 | 4_3:-51239123 | None:intergenic |
GACTTTCTTGGATTAGCATT+AGG | 0.374464 | 4_3:+51239137 | Msa0645800:CDS |
CAATACAAGGATATTAAAGT+TGG | 0.375129 | 4_3:+51239835 | Msa0645800:CDS |
TCAAATACTACTGGACTGTT+TGG | 0.387721 | 4_3:-51241359 | None:intergenic |
CATCTGGACAAATATTTGAT+AGG | 0.389186 | 4_3:+51240412 | Msa0645800:CDS |
GTGATGGTGATAAATTGAAT+TGG | 0.399389 | 4_3:-51241468 | None:intergenic |
TTCTCAACAGAAATGCTTTG+AGG | 0.406961 | 4_3:-51239029 | None:intergenic |
CTCCTACTTTCATGCTCAAA+AGG | 0.417335 | 4_3:-51240981 | None:intergenic |
TAAAGAGATCATATTCCTCT+TGG | 0.428915 | 4_3:-51241681 | None:intergenic |
ATAGTATATCATGGATTCTC+TGG | 0.430893 | 4_3:+51241655 | Msa0645800:three_prime_UTR |
AGATTCAGCTTCAATGTACT+TGG | 0.436583 | 4_3:-51241577 | None:intergenic |
ATGATGTTATTGTTTGCAAA+TGG | 0.440480 | 4_3:-51238803 | None:intergenic |
CCTATGGTAACTACTGAATC+AGG | 0.444760 | 4_3:+51239808 | Msa0645800:CDS |
TATGTTGCAATGGTTCCATC+TGG | 0.446081 | 4_3:+51240396 | Msa0645800:CDS |
TTTGATGCTGCTAATGGAGC+TGG | 0.447449 | 4_3:+51239185 | Msa0645800:CDS |
ATGACACAATATTACATCCT+TGG | 0.447775 | 4_3:+51238832 | Msa0645800:five_prime_UTR |
AAACTTACATCAAATACTAC+TGG | 0.453698 | 4_3:-51241368 | None:intergenic |
TGATATCCAACTGGTGGACT+AGG | 0.460176 | 4_3:-51239865 | None:intergenic |
GGACTGTTTGGAGCCACCCT+TGG | 0.463548 | 4_3:-51241347 | None:intergenic |
TGATGGTGATAAATTGAATT+GGG | 0.468025 | 4_3:-51241467 | None:intergenic |
TTTCTGCTTATTATTATGGT+TGG | 0.470296 | 4_3:-51241738 | None:intergenic |
AGACAGAAGCTTACTGATCC+AGG | 0.482305 | 4_3:-51241024 | None:intergenic |
CGTGGATGAGGAATAAACTT+AGG | 0.489097 | 4_3:+51241412 | Msa0645800:exon |
TCGCAGTTGGCATTCCCTAA+AGG | 0.493586 | 4_3:+51241302 | Msa0645800:intron |
TTACACACCTGATATCCAAC+TGG | 0.497134 | 4_3:-51239874 | None:intergenic |
TCCTCATCCACGTCAAGTCC+TGG | 0.497402 | 4_3:-51241401 | None:intergenic |
CACCATTTGACCAAAAGATC+GGG | 0.498608 | 4_3:-51241709 | None:intergenic |
TTTATGCATGAAGGTACCTA+TGG | 0.499177 | 4_3:+51239792 | Msa0645800:intron |
AATACAAGGATATTAAAGTT+GGG | 0.500943 | 4_3:+51239836 | Msa0645800:CDS |
CATTAGCAGCATCAAATGAA+TGG | 0.505775 | 4_3:-51239178 | None:intergenic |
CCACCATTTGACCAAAAGAT+CGG | 0.508402 | 4_3:-51241710 | None:intergenic |
GAAAACAGGGAACATGTTAA+CGG | 0.511961 | 4_3:+51241757 | Msa0645800:three_prime_UTR |
CTGTCATCGATAGTATATCA+TGG | 0.512913 | 4_3:+51241646 | Msa0645800:three_prime_UTR |
AAACGTCGGCTGTACATACC+TGG | 0.513530 | 4_3:+51241006 | Msa0645800:CDS |
GTTATTGTTTGCAAATGGAA+TGG | 0.514203 | 4_3:-51238798 | None:intergenic |
TGCGTTCAGTCAAGGTGGAA+TGG | 0.516263 | 4_3:-51241439 | None:intergenic |
CTATCAAATATTTGTCCAGA+TGG | 0.522457 | 4_3:-51240411 | None:intergenic |
TGAATCAGGTTTGCAATACA+AGG | 0.531477 | 4_3:+51239822 | Msa0645800:CDS |
AGGACTTACAAAGTGGAAGC+AGG | 0.541635 | 4_3:-51238880 | None:intergenic |
ATCCTTGGATATGCCTAGCA+TGG | 0.544626 | 4_3:+51238847 | Msa0645800:exon |
GTGATAAAAGGACTTGATGA+AGG | 0.565095 | 4_3:+51240958 | Msa0645800:CDS |
ACCAGGACTTGACGTGGATG+AGG | 0.572224 | 4_3:+51241400 | Msa0645800:CDS |
TACAAAGTGGAAGCAGGAGA+GGG | 0.573806 | 4_3:-51238874 | None:intergenic |
GGCTGCTAATTATGTTGCAA+TGG | 0.576500 | 4_3:+51240386 | Msa0645800:CDS |
CATGATATACTATCGATGAC+AGG | 0.577750 | 4_3:-51241645 | None:intergenic |
GGGTTGACTGCGTTCAGTCA+AGG | 0.578018 | 4_3:-51241447 | None:intergenic |
GATATCCAACTGGTGGACTA+GGG | 0.580308 | 4_3:-51239864 | None:intergenic |
AGGAGAGGGGAAGCCATGCT+AGG | 0.580475 | 4_3:-51238860 | None:intergenic |
CTTTGAGGAGCAGTAAGAGA+AGG | 0.581278 | 4_3:-51239014 | None:intergenic |
AAGTGAAGTCCACAGAGACA+AGG | 0.592596 | 4_3:+51239072 | Msa0645800:CDS |
GTAAGTTTGGAATATGTACC+AGG | 0.597022 | 4_3:+51241383 | Msa0645800:CDS |
AGTGCATTCCCTTGTCTCTG+TGG | 0.600039 | 4_3:-51239081 | None:intergenic |
CAAGGCCCTAGTCCACCAGT+TGG | 0.601514 | 4_3:+51239859 | Msa0645800:CDS |
AAAGGCCTTAATTCTGCACC+AGG | 0.603111 | 4_3:+51241320 | Msa0645800:CDS |
CCTGATTCAGTAGTTACCAT+AGG | 0.608091 | 4_3:-51239808 | None:intergenic |
CACACCTGATATCCAACTGG+TGG | 0.614939 | 4_3:-51239871 | None:intergenic |
AAGGATATTAAAGTTGGGCA+AGG | 0.616109 | 4_3:+51239841 | Msa0645800:CDS |
TTACAAAGTGGAAGCAGGAG+AGG | 0.616382 | 4_3:-51238875 | None:intergenic |
AGTGAAGTCCACAGAGACAA+GGG | 0.625615 | 4_3:+51239073 | Msa0645800:CDS |
ACAATTGTATAAGATAGTGA+TGG | 0.629046 | 4_3:-51241484 | None:intergenic |
AGCCATGCTAGGCATATCCA+AGG | 0.638646 | 4_3:-51238849 | None:intergenic |
TGCACCAGGAAGACCAAGGG+TGG | 0.644156 | 4_3:+51241334 | Msa0645800:CDS |
ACAAAGTGGAAGCAGGAGAG+GGG | 0.648340 | 4_3:-51238873 | None:intergenic |
TTCTGCACCAGGAAGACCAA+GGG | 0.663256 | 4_3:+51241331 | Msa0645800:CDS |
TGAAAGTAGGAGGGAAACGT+CGG | 0.675740 | 4_3:+51240992 | Msa0645800:CDS |
GGATGTAATATTGTGTCATG+TGG | 0.676551 | 4_3:-51238828 | None:intergenic |
TGGATTCTCTGGTCTCCAAG+AGG | 0.680434 | 4_3:+51241666 | Msa0645800:three_prime_UTR |
ATAATAATAAGCAGAAAACA+GGG | 0.687819 | 4_3:+51241744 | Msa0645800:three_prime_UTR |
TTGACTGCGTTCAGTCAAGG+TGG | 0.698133 | 4_3:-51241444 | None:intergenic |
ATTCTGCACCAGGAAGACCA+AGG | 0.707291 | 4_3:+51241330 | Msa0645800:CDS |
ATATGTACCAGGACTTGACG+TGG | 0.731552 | 4_3:+51241394 | Msa0645800:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATATTTATCTACTAAAATT+AGG | + | chr4_3:51239383-51239402 | Msa0645800:intron | 10.0% |
!! | AATATATTAATCATTTGATA+AGG | - | chr4_3:51240239-51240258 | None:intergenic | 10.0% |
!! | ATATTAACATAATAATCAAT+TGG | + | chr4_3:51240572-51240591 | Msa0645800:intron | 10.0% |
!!! | TATTTTTCAAAAAACATTTA+AGG | - | chr4_3:51240868-51240887 | None:intergenic | 10.0% |
!!! | TTTTAGTAGATAAATATTGA+AGG | - | chr4_3:51239381-51239400 | None:intergenic | 15.0% |
!!! | ATATAAATTTAGAGTATCAT+AGG | - | chr4_3:51240038-51240057 | None:intergenic | 15.0% |
!!! | TTTTATATAGATTCTACTTG+TGG | + | chr4_3:51238984-51239003 | Msa0645800:intron | 20.0% |
!!! | TATGTGACTAAAAATGTTTT+CGG | + | chr4_3:51239430-51239449 | Msa0645800:intron | 20.0% |
!!! | ATGTTTTCGGTTAAAAAAAT+TGG | + | chr4_3:51239443-51239462 | Msa0645800:intron | 20.0% |
!!! | TGTTTTCGGTTAAAAAAATT+GGG | + | chr4_3:51239444-51239463 | Msa0645800:intron | 20.0% |
!! | TCATTAACTATCGATATTAA+TGG | - | chr4_3:51239758-51239777 | None:intergenic | 20.0% |
!! | AATACAAGGATATTAAAGTT+GGG | + | chr4_3:51239836-51239855 | Msa0645800:CDS | 20.0% |
!! | AAGATACAAATCAAGTATTT+AGG | - | chr4_3:51239987-51240006 | None:intergenic | 20.0% |
!!! | AAATACTTGATTTGTATCTT+AGG | + | chr4_3:51239987-51240006 | Msa0645800:intron | 20.0% |
!!! | TACTTGTTTCTTTCTAAATT+TGG | - | chr4_3:51240598-51240617 | None:intergenic | 20.0% |
!!! | TATTGTAATTTGTAATGCTT+TGG | + | chr4_3:51240623-51240642 | Msa0645800:intron | 20.0% |
!!! | TACAATTGTTAATTCTTTTG+AGG | + | chr4_3:51241498-51241517 | Msa0645800:three_prime_UTR | 20.0% |
!! | ATAATAATAAGCAGAAAACA+GGG | + | chr4_3:51241744-51241763 | Msa0645800:three_prime_UTR | 20.0% |
! | ATGATGTTATTGTTTGCAAA+TGG | - | chr4_3:51238806-51238825 | None:intergenic | 25.0% |
! | CAGTATTATTTATGCATTGT+TGG | - | chr4_3:51238930-51238949 | None:intergenic | 25.0% |
!!! | CATAATTTTGGTTTTTCTTC+TGG | - | chr4_3:51239218-51239237 | None:intergenic | 25.0% |
!! | CAAGTTTCATCACATAATTT+TGG | - | chr4_3:51239230-51239249 | None:intergenic | 25.0% |
! | ATTTGTGAAGAACCTTATAA+TGG | - | chr4_3:51239555-51239574 | None:intergenic | 25.0% |
! | CAATACAAGGATATTAAAGT+TGG | + | chr4_3:51239835-51239854 | Msa0645800:CDS | 25.0% |
! | AGTAATCCTATATCATTATC+AGG | - | chr4_3:51240114-51240133 | None:intergenic | 25.0% |
! | GATTGACAGAAATTTGTAAT+CGG | - | chr4_3:51240444-51240463 | None:intergenic | 25.0% |
!! | AGAAGTACACTATATTTACA+TGG | - | chr4_3:51241119-51241138 | None:intergenic | 25.0% |
! | TAAGTACTTAATTCTAACGT+TGG | + | chr4_3:51241255-51241274 | Msa0645800:intron | 25.0% |
! | AAACTTACATCAAATACTAC+TGG | - | chr4_3:51241371-51241390 | None:intergenic | 25.0% |
! | AGTAGTATTTGATGTAAGTT+TGG | + | chr4_3:51241370-51241389 | Msa0645800:CDS | 25.0% |
!! | TGATGGTGATAAATTGAATT+GGG | - | chr4_3:51241470-51241489 | None:intergenic | 25.0% |
! | ACAATTGTATAAGATAGTGA+TGG | - | chr4_3:51241487-51241506 | None:intergenic | 25.0% |
! | TTCAATTTCCATACCTAAAA+TGG | + | chr4_3:51241615-51241634 | Msa0645800:three_prime_UTR | 25.0% |
!!! | GTTTAATACCATTTTAGGTA+TGG | - | chr4_3:51241626-51241645 | None:intergenic | 25.0% |
! | TTTCTGCTTATTATTATGGT+TGG | - | chr4_3:51241741-51241760 | None:intergenic | 25.0% |
!! | CTGTTTTCTGCTTATTATTA+TGG | - | chr4_3:51241745-51241764 | None:intergenic | 25.0% |
! | CATAATAATAAGCAGAAAAC+AGG | + | chr4_3:51241743-51241762 | Msa0645800:three_prime_UTR | 25.0% |
GTTATTGTTTGCAAATGGAA+TGG | - | chr4_3:51238801-51238820 | None:intergenic | 30.0% | |
ATGACACAATATTACATCCT+TGG | + | chr4_3:51238832-51238851 | Msa0645800:five_prime_UTR | 30.0% | |
!!! | AATTTTGGTTTTTCTTCTGG+TGG | - | chr4_3:51239215-51239234 | None:intergenic | 30.0% |
AGAAAGAGCTTGAAAATGTA+TGG | + | chr4_3:51239252-51239271 | Msa0645800:intron | 30.0% | |
GTAGACATTAATCACAGTTA+AGG | - | chr4_3:51239304-51239323 | None:intergenic | 30.0% | |
AAAACTTGCAATGAAATGAC+AGG | - | chr4_3:51239620-51239639 | None:intergenic | 30.0% | |
! | ACTGAGTATTTTATGCATGA+AGG | + | chr4_3:51239783-51239802 | Msa0645800:intron | 30.0% |
!! | CATTGACTGCATTTTTGAAA+TGG | - | chr4_3:51239942-51239961 | None:intergenic | 30.0% |
! | TTCAGTATTTTCTACGTAGA+AGG | - | chr4_3:51240070-51240089 | None:intergenic | 30.0% |
! | GGTACTGAAATCATCAATAT+TGG | - | chr4_3:51240093-51240112 | None:intergenic | 30.0% |
! | TCAGTACCTGATAATGATAT+AGG | + | chr4_3:51240105-51240124 | Msa0645800:intron | 30.0% |
! | CTTTAGCTAGTTTAGATTGA+AGG | - | chr4_3:51240206-51240225 | None:intergenic | 30.0% |
! | TTTTCATGTGCTTATCTGAT+AGG | + | chr4_3:51240362-51240381 | Msa0645800:intron | 30.0% |
CTATCAAATATTTGTCCAGA+TGG | - | chr4_3:51240414-51240433 | None:intergenic | 30.0% | |
CATCTGGACAAATATTTGAT+AGG | + | chr4_3:51240412-51240431 | Msa0645800:CDS | 30.0% | |
AATCATGCCTAATAAGATGT+TGG | + | chr4_3:51240543-51240562 | Msa0645800:intron | 30.0% | |
AACTGAAAAAGGAATGATCA+AGG | - | chr4_3:51240657-51240676 | None:intergenic | 30.0% | |
AGATGACAGAAAACTGAAAA+AGG | - | chr4_3:51240668-51240687 | None:intergenic | 30.0% | |
! | TTTCTGTCATCTTTCGATTT+TGG | + | chr4_3:51240676-51240695 | Msa0645800:intron | 30.0% |
!!! | TTTTTGAAGCTGTTGTCTTT+GGG | + | chr4_3:51240699-51240718 | Msa0645800:intron | 30.0% |
ATAACTGAGCATTCTAATGA+AGG | - | chr4_3:51240726-51240745 | None:intergenic | 30.0% | |
ATGAGCTGTAAAATTGGAAA+GGG | - | chr4_3:51240796-51240815 | None:intergenic | 30.0% | |
AATGAGCTGTAAAATTGGAA+AGG | - | chr4_3:51240797-51240816 | None:intergenic | 30.0% | |
! | TTTCCAATTTTACAGCTCAT+TGG | + | chr4_3:51240796-51240815 | Msa0645800:intron | 30.0% |
TGAAAGGATTATCAAACACT+AGG | - | chr4_3:51240903-51240922 | None:intergenic | 30.0% | |
TAATCCTTTCAAAGACTAAC+TGG | + | chr4_3:51240912-51240931 | Msa0645800:intron | 30.0% | |
!! | AATACCAGTTAGTCTTTGAA+AGG | - | chr4_3:51240919-51240938 | None:intergenic | 30.0% |
TTTATCACCTGATATCTCAT+CGG | - | chr4_3:51240946-51240965 | None:intergenic | 30.0% | |
ATGAGATATCAGGTGATAAA+AGG | + | chr4_3:51240946-51240965 | Msa0645800:intron | 30.0% | |
!! | GTCAATGCACATTTTAAGTA+TGG | - | chr4_3:51241165-51241184 | None:intergenic | 30.0% |
! | AATGTGCATTGACAACATAA+TGG | + | chr4_3:51241172-51241191 | Msa0645800:intron | 30.0% |
TGACAACATAATGGTGTAAA+AGG | + | chr4_3:51241181-51241200 | Msa0645800:intron | 30.0% | |
CTGACAGTTTATTTACAGAT+TGG | + | chr4_3:51241232-51241251 | Msa0645800:intron | 30.0% | |
! | GTGATGGTGATAAATTGAAT+TGG | - | chr4_3:51241471-51241490 | None:intergenic | 30.0% |
! | GACAGGTTTAATACCATTTT+AGG | - | chr4_3:51241631-51241650 | None:intergenic | 30.0% |
ATAGTATATCATGGATTCTC+TGG | + | chr4_3:51241655-51241674 | Msa0645800:three_prime_UTR | 30.0% | |
TAAAGAGATCATATTCCTCT+TGG | - | chr4_3:51241684-51241703 | None:intergenic | 30.0% | |
GGATGTAATATTGTGTCATG+TGG | - | chr4_3:51238831-51238850 | None:intergenic | 35.0% | |
AAGTGAAAGGACTTACAAAG+TGG | - | chr4_3:51238890-51238909 | None:intergenic | 35.0% | |
TGAGGAAAAGAGAAAGTGAA+AGG | - | chr4_3:51238903-51238922 | None:intergenic | 35.0% | |
TTATGCATTGTTGGATAGTG+AGG | - | chr4_3:51238921-51238940 | None:intergenic | 35.0% | |
TTCTCAACAGAAATGCTTTG+AGG | - | chr4_3:51239032-51239051 | None:intergenic | 35.0% | |
AAGAAAGTCTCTACGTGAAT+TGG | - | chr4_3:51239126-51239145 | None:intergenic | 35.0% | |
AATTCACGTAGAGACTTTCT+TGG | + | chr4_3:51239125-51239144 | Msa0645800:CDS | 35.0% | |
!! | GACTTTCTTGGATTAGCATT+AGG | + | chr4_3:51239137-51239156 | Msa0645800:CDS | 35.0% |
CATTAGCAGCATCAAATGAA+TGG | - | chr4_3:51239181-51239200 | None:intergenic | 35.0% | |
CATTCATTTGATGCTGCTAA+TGG | + | chr4_3:51239179-51239198 | Msa0645800:CDS | 35.0% | |
TCACAGTTAAGGCATAGAAA+GGG | - | chr4_3:51239293-51239312 | None:intergenic | 35.0% | |
ATCACAGTTAAGGCATAGAA+AGG | - | chr4_3:51239294-51239313 | None:intergenic | 35.0% | |
CTCTTAAAACGTTTGACGAA+AGG | + | chr4_3:51239525-51239544 | Msa0645800:intron | 35.0% | |
ACGAAAGGACTTCCATTATA+AGG | + | chr4_3:51239540-51239559 | Msa0645800:intron | 35.0% | |
!! | TTTATGCATGAAGGTACCTA+TGG | + | chr4_3:51239792-51239811 | Msa0645800:intron | 35.0% |
TGAATCAGGTTTGCAATACA+AGG | + | chr4_3:51239822-51239841 | Msa0645800:CDS | 35.0% | |
AAGGATATTAAAGTTGGGCA+AGG | + | chr4_3:51239841-51239860 | Msa0645800:CDS | 35.0% | |
!!! | TGACTGCATTTTTGAAATGG+TGG | - | chr4_3:51239939-51239958 | None:intergenic | 35.0% |
GCATCAATCTCGTTCAAAAT+TGG | - | chr4_3:51239965-51239984 | None:intergenic | 35.0% | |
AGTTTAGATTGAAGGAAGCA+AGG | - | chr4_3:51240198-51240217 | None:intergenic | 35.0% | |
TGACAGAAATTTGTAATCGG+CGG | - | chr4_3:51240441-51240460 | None:intergenic | 35.0% | |
ATACAACAGCAAACATCACT+TGG | - | chr4_3:51240494-51240513 | None:intergenic | 35.0% | |
TCACACTCCAACATCTTATT+AGG | - | chr4_3:51240553-51240572 | None:intergenic | 35.0% | |
!!! | GTTTTTGAAGCTGTTGTCTT+TGG | + | chr4_3:51240698-51240717 | Msa0645800:intron | 35.0% |
TGTATGCACTGTAATGAGAA+TGG | + | chr4_3:51240747-51240766 | Msa0645800:intron | 35.0% | |
TCTCCAATGAGCTGTAAAAT+TGG | - | chr4_3:51240802-51240821 | None:intergenic | 35.0% | |
! | TTTTACAGCTCATTGGAGAA+AGG | + | chr4_3:51240803-51240822 | Msa0645800:intron | 35.0% |
TTATCACCTGATATCTCATC+GGG | - | chr4_3:51240945-51240964 | None:intergenic | 35.0% | |
GTGATAAAAGGACTTGATGA+AGG | + | chr4_3:51240958-51240977 | Msa0645800:CDS | 35.0% | |
! | TTTTGAGCATGAAAGTAGGA+GGG | + | chr4_3:51240983-51241002 | Msa0645800:CDS | 35.0% |
!! | GTTTTGAATCTTGCAATGCT+GGG | - | chr4_3:51241071-51241090 | None:intergenic | 35.0% |
!! | TGTTTTGAATCTTGCAATGC+TGG | - | chr4_3:51241072-51241091 | None:intergenic | 35.0% |
!! | GTGTACTTCTAGTTTCTCAA+TGG | + | chr4_3:51241129-51241148 | Msa0645800:intron | 35.0% |
!! | TTCTTTTCTTGTTTCGCAGT+TGG | + | chr4_3:51241289-51241308 | Msa0645800:intron | 35.0% |
TCAAATACTACTGGACTGTT+TGG | - | chr4_3:51241362-51241381 | None:intergenic | 35.0% | |
! | GTAAGTTTGGAATATGTACC+AGG | + | chr4_3:51241383-51241402 | Msa0645800:CDS | 35.0% |
AGATTCAGCTTCAATGTACT+TGG | - | chr4_3:51241580-51241599 | None:intergenic | 35.0% | |
CATGATATACTATCGATGAC+AGG | - | chr4_3:51241648-51241667 | None:intergenic | 35.0% | |
CTGTCATCGATAGTATATCA+TGG | + | chr4_3:51241646-51241665 | Msa0645800:three_prime_UTR | 35.0% | |
! | CTTTATTCTACCCGATCTTT+TGG | + | chr4_3:51241699-51241718 | Msa0645800:three_prime_UTR | 35.0% |
GAAAACAGGGAACATGTTAA+CGG | + | chr4_3:51241757-51241776 | Msa0645800:three_prime_UTR | 35.0% | |
! | AGCTTCTGTCAGGGAATTTT+TGG | - | chr4_3:51239650-51239669 | None:intergenic | 40.0% |
ACTGAACAAAGCTTCTGTCA+GGG | - | chr4_3:51239659-51239678 | None:intergenic | 40.0% | |
CCTGATTCAGTAGTTACCAT+AGG | - | chr4_3:51239811-51239830 | None:intergenic | 40.0% | |
CCTATGGTAACTACTGAATC+AGG | + | chr4_3:51239808-51239827 | Msa0645800:CDS | 40.0% | |
TTACACACCTGATATCCAAC+TGG | - | chr4_3:51239877-51239896 | None:intergenic | 40.0% | |
TAGATTGAAGGAAGCAAGGA+CGG | - | chr4_3:51240194-51240213 | None:intergenic | 40.0% | |
AACAATACACATGCTGACAG+AGG | - | chr4_3:51240318-51240337 | None:intergenic | 40.0% | |
TCATGTGCTTATCTGATAGG+TGG | + | chr4_3:51240365-51240384 | Msa0645800:intron | 40.0% | |
GGCTGCTAATTATGTTGCAA+TGG | + | chr4_3:51240386-51240405 | Msa0645800:CDS | 40.0% | |
TATGTTGCAATGGTTCCATC+TGG | + | chr4_3:51240396-51240415 | Msa0645800:CDS | 40.0% | |
CAACGCGAAAAATGTAAAGC+TGG | - | chr4_3:51240829-51240848 | None:intergenic | 40.0% | |
! | CAGCTTTACATTTTTCGCGT+TGG | + | chr4_3:51240827-51240846 | Msa0645800:CDS | 40.0% |
! | TACATTTTTCGCGTTGGATC+TGG | + | chr4_3:51240833-51240852 | Msa0645800:CDS | 40.0% |
ATTCAACCCGATGAGATATC+AGG | + | chr4_3:51240936-51240955 | Msa0645800:intron | 40.0% | |
CTCCTACTTTCATGCTCAAA+AGG | - | chr4_3:51240984-51241003 | None:intergenic | 40.0% | |
! | CTTTTGAGCATGAAAGTAGG+AGG | + | chr4_3:51240982-51241001 | Msa0645800:CDS | 40.0% |
GTGCAGAATTAAGGCCTTTA+GGG | - | chr4_3:51241319-51241338 | None:intergenic | 40.0% | |
CGTGGATGAGGAATAAACTT+AGG | + | chr4_3:51241412-51241431 | Msa0645800:exon | 40.0% | |
! | TACCCGATCTTTTGGTCAAA+TGG | + | chr4_3:51241707-51241726 | Msa0645800:three_prime_UTR | 40.0% |
CACCATTTGACCAAAAGATC+GGG | - | chr4_3:51241712-51241731 | None:intergenic | 40.0% | |
CCACCATTTGACCAAAAGAT+CGG | - | chr4_3:51241713-51241732 | None:intergenic | 40.0% | |
ATCCTTGGATATGCCTAGCA+TGG | + | chr4_3:51238847-51238866 | Msa0645800:exon | 45.0% | |
TACAAAGTGGAAGCAGGAGA+GGG | - | chr4_3:51238877-51238896 | None:intergenic | 45.0% | |
TTACAAAGTGGAAGCAGGAG+AGG | - | chr4_3:51238878-51238897 | None:intergenic | 45.0% | |
AGGACTTACAAAGTGGAAGC+AGG | - | chr4_3:51238883-51238902 | None:intergenic | 45.0% | |
! | CTTTGAGGAGCAGTAAGAGA+AGG | - | chr4_3:51239017-51239036 | None:intergenic | 45.0% |
AAGTGAAGTCCACAGAGACA+AGG | + | chr4_3:51239072-51239091 | Msa0645800:CDS | 45.0% | |
AGTGAAGTCCACAGAGACAA+GGG | + | chr4_3:51239073-51239092 | Msa0645800:CDS | 45.0% | |
TTTGATGCTGCTAATGGAGC+TGG | + | chr4_3:51239185-51239204 | Msa0645800:CDS | 45.0% | |
TTGAAGGTGACACAACTGCA+TGG | - | chr4_3:51239365-51239384 | None:intergenic | 45.0% | |
CACTGAACAAAGCTTCTGTC+AGG | - | chr4_3:51239660-51239679 | None:intergenic | 45.0% | |
!! | CTGACAGAAGCTTTGTTCAG+TGG | + | chr4_3:51239658-51239677 | Msa0645800:intron | 45.0% |
!! | GATATCCAACTGGTGGACTA+GGG | - | chr4_3:51239867-51239886 | None:intergenic | 45.0% |
!! | TGATATCCAACTGGTGGACT+AGG | - | chr4_3:51239868-51239887 | None:intergenic | 45.0% |
TAGTCCACCAGTTGGATATC+AGG | + | chr4_3:51239867-51239886 | Msa0645800:CDS | 45.0% | |
AGATTGAAGGAAGCAAGGAC+GGG | - | chr4_3:51240193-51240212 | None:intergenic | 45.0% | |
! | GGCCTTTTGAGCATGAAAGT+AGG | + | chr4_3:51240979-51240998 | Msa0645800:CDS | 45.0% |
TGAAAGTAGGAGGGAAACGT+CGG | + | chr4_3:51240992-51241011 | Msa0645800:CDS | 45.0% | |
AGACAGAAGCTTACTGATCC+AGG | - | chr4_3:51241027-51241046 | None:intergenic | 45.0% | |
GGTGCAGAATTAAGGCCTTT+AGG | - | chr4_3:51241320-51241339 | None:intergenic | 45.0% | |
AAAGGCCTTAATTCTGCACC+AGG | + | chr4_3:51241320-51241339 | Msa0645800:CDS | 45.0% | |
GTCTTCCTGGTGCAGAATTA+AGG | - | chr4_3:51241328-51241347 | None:intergenic | 45.0% | |
ATATGTACCAGGACTTGACG+TGG | + | chr4_3:51241394-51241413 | Msa0645800:CDS | 45.0% | |
! | CCGATCTTTTGGTCAAATGG+TGG | + | chr4_3:51241710-51241729 | Msa0645800:three_prime_UTR | 45.0% |
AGCCATGCTAGGCATATCCA+AGG | - | chr4_3:51238852-51238871 | None:intergenic | 50.0% | |
ACAAAGTGGAAGCAGGAGAG+GGG | - | chr4_3:51238876-51238895 | None:intergenic | 50.0% | |
AGTGCATTCCCTTGTCTCTG+TGG | - | chr4_3:51239084-51239103 | None:intergenic | 50.0% | |
CACACCTGATATCCAACTGG+TGG | - | chr4_3:51239874-51239893 | None:intergenic | 50.0% | |
GCGTTCAAGGGAAACTGAAC+AGG | - | chr4_3:51239910-51239929 | None:intergenic | 50.0% | |
GGAAAGGGTCATACTCACAC+AGG | - | chr4_3:51240781-51240800 | None:intergenic | 50.0% | |
! | TTTTCGCGTTGGATCTGGTC+AGG | + | chr4_3:51240838-51240857 | Msa0645800:CDS | 50.0% |
! | AAACGTCGGCTGTACATACC+TGG | + | chr4_3:51241006-51241025 | Msa0645800:CDS | 50.0% |
TCGCAGTTGGCATTCCCTAA+AGG | + | chr4_3:51241302-51241321 | Msa0645800:intron | 50.0% | |
ATTCTGCACCAGGAAGACCA+AGG | + | chr4_3:51241330-51241349 | Msa0645800:CDS | 50.0% | |
TTCTGCACCAGGAAGACCAA+GGG | + | chr4_3:51241331-51241350 | Msa0645800:CDS | 50.0% | |
TGCGTTCAGTCAAGGTGGAA+TGG | - | chr4_3:51241442-51241461 | None:intergenic | 50.0% | |
TTGACTGCGTTCAGTCAAGG+TGG | - | chr4_3:51241447-51241466 | None:intergenic | 50.0% | |
TGGATTCTCTGGTCTCCAAG+AGG | + | chr4_3:51241666-51241685 | Msa0645800:three_prime_UTR | 50.0% | |
TGGTGGAGACGAGCGTTCAA+GGG | - | chr4_3:51239922-51239941 | None:intergenic | 55.0% | |
! | ATGGTGGAGACGAGCGTTCA+AGG | - | chr4_3:51239923-51239942 | None:intergenic | 55.0% |
ACCAGGACTTGACGTGGATG+AGG | + | chr4_3:51241400-51241419 | Msa0645800:CDS | 55.0% | |
TCCTCATCCACGTCAAGTCC+TGG | - | chr4_3:51241404-51241423 | None:intergenic | 55.0% | |
GGGTTGACTGCGTTCAGTCA+AGG | - | chr4_3:51241450-51241469 | None:intergenic | 55.0% | |
AGGAGAGGGGAAGCCATGCT+AGG | - | chr4_3:51238863-51238882 | None:intergenic | 60.0% | |
CAAGGCCCTAGTCCACCAGT+TGG | + | chr4_3:51239859-51239878 | Msa0645800:CDS | 60.0% | |
TGCACCAGGAAGACCAAGGG+TGG | + | chr4_3:51241334-51241353 | Msa0645800:CDS | 60.0% | |
! | GGACTGTTTGGAGCCACCCT+TGG | - | chr4_3:51241350-51241369 | None:intergenic | 60.0% |
! | GGAGCCACCCTTGGTCTTCC+TGG | - | chr4_3:51241341-51241360 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_3 | gene | 51238777 | 51241787 | 51238777 | ID=Msa0645800;Name=Msa0645800 |
chr4_3 | mRNA | 51238777 | 51241787 | 51238777 | ID=Msa0645800-mRNA-1;Parent=Msa0645800;Name=Msa0645800-mRNA-1;_AED=0.02;_eAED=0.02;_QI=80|1|1|1|1|1|7|360|229 |
chr4_3 | exon | 51238777 | 51238893 | 51238777 | ID=Msa0645800-mRNA-1:exon:12355;Parent=Msa0645800-mRNA-1 |
chr4_3 | exon | 51238994 | 51239268 | 51238994 | ID=Msa0645800-mRNA-1:exon:12356;Parent=Msa0645800-mRNA-1 |
chr4_3 | exon | 51239805 | 51239888 | 51239805 | ID=Msa0645800-mRNA-1:exon:12357;Parent=Msa0645800-mRNA-1 |
chr4_3 | exon | 51240384 | 51240433 | 51240384 | ID=Msa0645800-mRNA-1:exon:12358;Parent=Msa0645800-mRNA-1 |
chr4_3 | exon | 51240811 | 51240859 | 51240811 | ID=Msa0645800-mRNA-1:exon:12359;Parent=Msa0645800-mRNA-1 |
chr4_3 | exon | 51240958 | 51241032 | 51240958 | ID=Msa0645800-mRNA-1:exon:12360;Parent=Msa0645800-mRNA-1 |
chr4_3 | exon | 51241308 | 51241787 | 51241308 | ID=Msa0645800-mRNA-1:exon:12361;Parent=Msa0645800-mRNA-1 |
chr4_3 | five_prime_UTR | 51238777 | 51238856 | 51238777 | ID=Msa0645800-mRNA-1:five_prime_utr;Parent=Msa0645800-mRNA-1 |
chr4_3 | CDS | 51238857 | 51238893 | 51238857 | ID=Msa0645800-mRNA-1:cds;Parent=Msa0645800-mRNA-1 |
chr4_3 | CDS | 51238994 | 51239268 | 51238994 | ID=Msa0645800-mRNA-1:cds;Parent=Msa0645800-mRNA-1 |
chr4_3 | CDS | 51239805 | 51239888 | 51239805 | ID=Msa0645800-mRNA-1:cds;Parent=Msa0645800-mRNA-1 |
chr4_3 | CDS | 51240384 | 51240433 | 51240384 | ID=Msa0645800-mRNA-1:cds;Parent=Msa0645800-mRNA-1 |
chr4_3 | CDS | 51240811 | 51240859 | 51240811 | ID=Msa0645800-mRNA-1:cds;Parent=Msa0645800-mRNA-1 |
chr4_3 | CDS | 51240958 | 51241032 | 51240958 | ID=Msa0645800-mRNA-1:cds;Parent=Msa0645800-mRNA-1 |
chr4_3 | CDS | 51241308 | 51241427 | 51241308 | ID=Msa0645800-mRNA-1:cds;Parent=Msa0645800-mRNA-1 |
chr4_3 | three_prime_UTR | 51241428 | 51241787 | 51241428 | ID=Msa0645800-mRNA-1:three_prime_utr;Parent=Msa0645800-mRNA-1 |
Gene Sequence |
Protein sequence |