AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0645800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0645800 MtrunA17_Chr4g0033841 97.817 229 5 0 1 229 1 229 6.22e-165 454
Msa0645800 MtrunA17_Chr8g0382711 27.568 185 117 4 41 218 29 203 1.14e-17 78.6
Msa0645800 MtrunA17_Chr4g0052911 33.918 171 92 5 55 218 80 236 3.16e-16 75.1
Msa0645800 MtrunA17_Chr8g0377771 40.367 109 60 3 111 218 36 140 3.77e-16 77.0
Msa0645800 MtrunA17_Chr8g0335211 40.449 89 53 0 108 196 95 183 7.14e-15 70.9
Msa0645800 MtrunA17_Chr8g0339141 40.860 93 51 2 126 218 54 142 7.19e-14 70.1
Msa0645800 MtrunA17_Chr8g0339171 38.000 100 58 2 130 229 50 145 4.63e-13 64.7
Msa0645800 MtrunA17_Chr5g0396231 40.678 118 55 5 112 223 393 501 1.44e-12 66.2
Msa0645800 MtrunA17_Chr7g0255551 36.559 93 55 2 126 218 35 123 8.04e-12 64.3
Msa0645800 MtrunA17_Chr7g0234801 36.735 98 57 3 122 218 43 136 3.79e-11 62.0
Msa0645800 MtrunA17_Chr7g0214751 35.780 109 58 4 108 205 97 204 6.57e-11 60.5
Msa0645800 MtrunA17_Chr1g0179681 37.815 119 58 5 109 218 129 240 9.33e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0645800 AT2G43560.1 68.122 229 67 2 1 229 1 223 8.70e-101 292
Msa0645800 AT2G43560.2 82.424 165 29 0 65 229 3 167 1.08e-93 272
Msa0645800 AT5G45680.1 37.500 128 71 3 101 221 80 205 9.54e-18 79.0
Msa0645800 AT4G39710.1 37.190 121 68 3 111 223 93 213 2.93e-16 75.1
Msa0645800 AT4G39710.3 37.190 121 68 3 111 223 93 213 2.93e-16 75.1
Msa0645800 AT5G48580.1 40.449 89 49 2 130 218 52 136 4.65e-14 68.2
Msa0645800 AT3G60370.1 36.937 111 69 1 87 196 94 204 5.16e-14 69.3
Msa0645800 AT3G25220.1 39.362 94 53 2 130 223 52 141 7.09e-14 67.4
Msa0645800 AT3G60370.2 36.937 111 69 1 87 196 123 233 7.74e-14 69.3
Msa0645800 AT5G05420.1 43.333 90 44 3 130 218 56 139 3.07e-13 65.5
Msa0645800 AT3G25230.1 36.697 109 64 3 111 218 37 141 4.55e-12 65.5
Msa0645800 AT3G25230.2 36.697 109 64 3 111 218 37 141 5.32e-12 65.1
Msa0645800 AT5G48570.1 36.283 113 67 3 107 218 41 149 2.96e-11 62.8
Msa0645800 AT4G25340.1 38.182 110 60 5 112 218 369 473 3.19e-11 62.8

Find 85 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAATTTCCATACCTAAAA+TGG 0.140163 4_3:+51241615 Msa0645800:three_prime_UTR
GGAGCCACCCTTGGTCTTCC+TGG 0.209095 4_3:-51241338 None:intergenic
CAAGTTTCATCACATAATTT+TGG 0.254636 4_3:-51239227 None:intergenic
GTGCAGAATTAAGGCCTTTA+GGG 0.275774 4_3:-51241316 None:intergenic
CATTCATTTGATGCTGCTAA+TGG 0.284118 4_3:+51239179 Msa0645800:CDS
GGTGCAGAATTAAGGCCTTT+AGG 0.289156 4_3:-51241317 None:intergenic
GTCTTCCTGGTGCAGAATTA+AGG 0.291862 4_3:-51241325 None:intergenic
CAAACTAGACAAACTAGATT+TGG 0.295021 4_3:+51238770 None:intergenic
AATTCACGTAGAGACTTTCT+TGG 0.312447 4_3:+51239125 Msa0645800:CDS
CTTTATTCTACCCGATCTTT+TGG 0.316606 4_3:+51241699 Msa0645800:three_prime_UTR
ATGAGATATCAGGTGATAAA+AGG 0.326010 4_3:+51240946 Msa0645800:intron
CATAATAATAAGCAGAAAAC+AGG 0.327262 4_3:+51241743 Msa0645800:three_prime_UTR
AGTAGTATTTGATGTAAGTT+TGG 0.332631 4_3:+51241370 Msa0645800:CDS
TAGTCCACCAGTTGGATATC+AGG 0.360762 4_3:+51239867 Msa0645800:CDS
AAGAAAGTCTCTACGTGAAT+TGG 0.368565 4_3:-51239123 None:intergenic
GACTTTCTTGGATTAGCATT+AGG 0.374464 4_3:+51239137 Msa0645800:CDS
CAATACAAGGATATTAAAGT+TGG 0.375129 4_3:+51239835 Msa0645800:CDS
TCAAATACTACTGGACTGTT+TGG 0.387721 4_3:-51241359 None:intergenic
CATCTGGACAAATATTTGAT+AGG 0.389186 4_3:+51240412 Msa0645800:CDS
GTGATGGTGATAAATTGAAT+TGG 0.399389 4_3:-51241468 None:intergenic
TTCTCAACAGAAATGCTTTG+AGG 0.406961 4_3:-51239029 None:intergenic
CTCCTACTTTCATGCTCAAA+AGG 0.417335 4_3:-51240981 None:intergenic
TAAAGAGATCATATTCCTCT+TGG 0.428915 4_3:-51241681 None:intergenic
ATAGTATATCATGGATTCTC+TGG 0.430893 4_3:+51241655 Msa0645800:three_prime_UTR
AGATTCAGCTTCAATGTACT+TGG 0.436583 4_3:-51241577 None:intergenic
ATGATGTTATTGTTTGCAAA+TGG 0.440480 4_3:-51238803 None:intergenic
CCTATGGTAACTACTGAATC+AGG 0.444760 4_3:+51239808 Msa0645800:CDS
TATGTTGCAATGGTTCCATC+TGG 0.446081 4_3:+51240396 Msa0645800:CDS
TTTGATGCTGCTAATGGAGC+TGG 0.447449 4_3:+51239185 Msa0645800:CDS
ATGACACAATATTACATCCT+TGG 0.447775 4_3:+51238832 Msa0645800:five_prime_UTR
AAACTTACATCAAATACTAC+TGG 0.453698 4_3:-51241368 None:intergenic
TGATATCCAACTGGTGGACT+AGG 0.460176 4_3:-51239865 None:intergenic
GGACTGTTTGGAGCCACCCT+TGG 0.463548 4_3:-51241347 None:intergenic
TGATGGTGATAAATTGAATT+GGG 0.468025 4_3:-51241467 None:intergenic
TTTCTGCTTATTATTATGGT+TGG 0.470296 4_3:-51241738 None:intergenic
AGACAGAAGCTTACTGATCC+AGG 0.482305 4_3:-51241024 None:intergenic
CGTGGATGAGGAATAAACTT+AGG 0.489097 4_3:+51241412 Msa0645800:exon
TCGCAGTTGGCATTCCCTAA+AGG 0.493586 4_3:+51241302 Msa0645800:intron
TTACACACCTGATATCCAAC+TGG 0.497134 4_3:-51239874 None:intergenic
TCCTCATCCACGTCAAGTCC+TGG 0.497402 4_3:-51241401 None:intergenic
CACCATTTGACCAAAAGATC+GGG 0.498608 4_3:-51241709 None:intergenic
TTTATGCATGAAGGTACCTA+TGG 0.499177 4_3:+51239792 Msa0645800:intron
AATACAAGGATATTAAAGTT+GGG 0.500943 4_3:+51239836 Msa0645800:CDS
CATTAGCAGCATCAAATGAA+TGG 0.505775 4_3:-51239178 None:intergenic
CCACCATTTGACCAAAAGAT+CGG 0.508402 4_3:-51241710 None:intergenic
GAAAACAGGGAACATGTTAA+CGG 0.511961 4_3:+51241757 Msa0645800:three_prime_UTR
CTGTCATCGATAGTATATCA+TGG 0.512913 4_3:+51241646 Msa0645800:three_prime_UTR
AAACGTCGGCTGTACATACC+TGG 0.513530 4_3:+51241006 Msa0645800:CDS
GTTATTGTTTGCAAATGGAA+TGG 0.514203 4_3:-51238798 None:intergenic
TGCGTTCAGTCAAGGTGGAA+TGG 0.516263 4_3:-51241439 None:intergenic
CTATCAAATATTTGTCCAGA+TGG 0.522457 4_3:-51240411 None:intergenic
TGAATCAGGTTTGCAATACA+AGG 0.531477 4_3:+51239822 Msa0645800:CDS
AGGACTTACAAAGTGGAAGC+AGG 0.541635 4_3:-51238880 None:intergenic
ATCCTTGGATATGCCTAGCA+TGG 0.544626 4_3:+51238847 Msa0645800:exon
GTGATAAAAGGACTTGATGA+AGG 0.565095 4_3:+51240958 Msa0645800:CDS
ACCAGGACTTGACGTGGATG+AGG 0.572224 4_3:+51241400 Msa0645800:CDS
TACAAAGTGGAAGCAGGAGA+GGG 0.573806 4_3:-51238874 None:intergenic
GGCTGCTAATTATGTTGCAA+TGG 0.576500 4_3:+51240386 Msa0645800:CDS
CATGATATACTATCGATGAC+AGG 0.577750 4_3:-51241645 None:intergenic
GGGTTGACTGCGTTCAGTCA+AGG 0.578018 4_3:-51241447 None:intergenic
GATATCCAACTGGTGGACTA+GGG 0.580308 4_3:-51239864 None:intergenic
AGGAGAGGGGAAGCCATGCT+AGG 0.580475 4_3:-51238860 None:intergenic
CTTTGAGGAGCAGTAAGAGA+AGG 0.581278 4_3:-51239014 None:intergenic
AAGTGAAGTCCACAGAGACA+AGG 0.592596 4_3:+51239072 Msa0645800:CDS
GTAAGTTTGGAATATGTACC+AGG 0.597022 4_3:+51241383 Msa0645800:CDS
AGTGCATTCCCTTGTCTCTG+TGG 0.600039 4_3:-51239081 None:intergenic
CAAGGCCCTAGTCCACCAGT+TGG 0.601514 4_3:+51239859 Msa0645800:CDS
AAAGGCCTTAATTCTGCACC+AGG 0.603111 4_3:+51241320 Msa0645800:CDS
CCTGATTCAGTAGTTACCAT+AGG 0.608091 4_3:-51239808 None:intergenic
CACACCTGATATCCAACTGG+TGG 0.614939 4_3:-51239871 None:intergenic
AAGGATATTAAAGTTGGGCA+AGG 0.616109 4_3:+51239841 Msa0645800:CDS
TTACAAAGTGGAAGCAGGAG+AGG 0.616382 4_3:-51238875 None:intergenic
AGTGAAGTCCACAGAGACAA+GGG 0.625615 4_3:+51239073 Msa0645800:CDS
ACAATTGTATAAGATAGTGA+TGG 0.629046 4_3:-51241484 None:intergenic
AGCCATGCTAGGCATATCCA+AGG 0.638646 4_3:-51238849 None:intergenic
TGCACCAGGAAGACCAAGGG+TGG 0.644156 4_3:+51241334 Msa0645800:CDS
ACAAAGTGGAAGCAGGAGAG+GGG 0.648340 4_3:-51238873 None:intergenic
TTCTGCACCAGGAAGACCAA+GGG 0.663256 4_3:+51241331 Msa0645800:CDS
TGAAAGTAGGAGGGAAACGT+CGG 0.675740 4_3:+51240992 Msa0645800:CDS
GGATGTAATATTGTGTCATG+TGG 0.676551 4_3:-51238828 None:intergenic
TGGATTCTCTGGTCTCCAAG+AGG 0.680434 4_3:+51241666 Msa0645800:three_prime_UTR
ATAATAATAAGCAGAAAACA+GGG 0.687819 4_3:+51241744 Msa0645800:three_prime_UTR
TTGACTGCGTTCAGTCAAGG+TGG 0.698133 4_3:-51241444 None:intergenic
ATTCTGCACCAGGAAGACCA+AGG 0.707291 4_3:+51241330 Msa0645800:CDS
ATATGTACCAGGACTTGACG+TGG 0.731552 4_3:+51241394 Msa0645800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTTATCTACTAAAATT+AGG + chr4_3:51239383-51239402 Msa0645800:intron 10.0%
!! AATATATTAATCATTTGATA+AGG - chr4_3:51240239-51240258 None:intergenic 10.0%
!! ATATTAACATAATAATCAAT+TGG + chr4_3:51240572-51240591 Msa0645800:intron 10.0%
!!! TATTTTTCAAAAAACATTTA+AGG - chr4_3:51240868-51240887 None:intergenic 10.0%
!!! TTTTAGTAGATAAATATTGA+AGG - chr4_3:51239381-51239400 None:intergenic 15.0%
!!! ATATAAATTTAGAGTATCAT+AGG - chr4_3:51240038-51240057 None:intergenic 15.0%
!!! TTTTATATAGATTCTACTTG+TGG + chr4_3:51238984-51239003 Msa0645800:intron 20.0%
!!! TATGTGACTAAAAATGTTTT+CGG + chr4_3:51239430-51239449 Msa0645800:intron 20.0%
!!! ATGTTTTCGGTTAAAAAAAT+TGG + chr4_3:51239443-51239462 Msa0645800:intron 20.0%
!!! TGTTTTCGGTTAAAAAAATT+GGG + chr4_3:51239444-51239463 Msa0645800:intron 20.0%
!! TCATTAACTATCGATATTAA+TGG - chr4_3:51239758-51239777 None:intergenic 20.0%
!! AATACAAGGATATTAAAGTT+GGG + chr4_3:51239836-51239855 Msa0645800:CDS 20.0%
!! AAGATACAAATCAAGTATTT+AGG - chr4_3:51239987-51240006 None:intergenic 20.0%
!!! AAATACTTGATTTGTATCTT+AGG + chr4_3:51239987-51240006 Msa0645800:intron 20.0%
!!! TACTTGTTTCTTTCTAAATT+TGG - chr4_3:51240598-51240617 None:intergenic 20.0%
!!! TATTGTAATTTGTAATGCTT+TGG + chr4_3:51240623-51240642 Msa0645800:intron 20.0%
!!! TACAATTGTTAATTCTTTTG+AGG + chr4_3:51241498-51241517 Msa0645800:three_prime_UTR 20.0%
!! ATAATAATAAGCAGAAAACA+GGG + chr4_3:51241744-51241763 Msa0645800:three_prime_UTR 20.0%
! ATGATGTTATTGTTTGCAAA+TGG - chr4_3:51238806-51238825 None:intergenic 25.0%
! CAGTATTATTTATGCATTGT+TGG - chr4_3:51238930-51238949 None:intergenic 25.0%
!!! CATAATTTTGGTTTTTCTTC+TGG - chr4_3:51239218-51239237 None:intergenic 25.0%
!! CAAGTTTCATCACATAATTT+TGG - chr4_3:51239230-51239249 None:intergenic 25.0%
! ATTTGTGAAGAACCTTATAA+TGG - chr4_3:51239555-51239574 None:intergenic 25.0%
! CAATACAAGGATATTAAAGT+TGG + chr4_3:51239835-51239854 Msa0645800:CDS 25.0%
! AGTAATCCTATATCATTATC+AGG - chr4_3:51240114-51240133 None:intergenic 25.0%
! GATTGACAGAAATTTGTAAT+CGG - chr4_3:51240444-51240463 None:intergenic 25.0%
!! AGAAGTACACTATATTTACA+TGG - chr4_3:51241119-51241138 None:intergenic 25.0%
! TAAGTACTTAATTCTAACGT+TGG + chr4_3:51241255-51241274 Msa0645800:intron 25.0%
! AAACTTACATCAAATACTAC+TGG - chr4_3:51241371-51241390 None:intergenic 25.0%
! AGTAGTATTTGATGTAAGTT+TGG + chr4_3:51241370-51241389 Msa0645800:CDS 25.0%
!! TGATGGTGATAAATTGAATT+GGG - chr4_3:51241470-51241489 None:intergenic 25.0%
! ACAATTGTATAAGATAGTGA+TGG - chr4_3:51241487-51241506 None:intergenic 25.0%
! TTCAATTTCCATACCTAAAA+TGG + chr4_3:51241615-51241634 Msa0645800:three_prime_UTR 25.0%
!!! GTTTAATACCATTTTAGGTA+TGG - chr4_3:51241626-51241645 None:intergenic 25.0%
! TTTCTGCTTATTATTATGGT+TGG - chr4_3:51241741-51241760 None:intergenic 25.0%
!! CTGTTTTCTGCTTATTATTA+TGG - chr4_3:51241745-51241764 None:intergenic 25.0%
! CATAATAATAAGCAGAAAAC+AGG + chr4_3:51241743-51241762 Msa0645800:three_prime_UTR 25.0%
GTTATTGTTTGCAAATGGAA+TGG - chr4_3:51238801-51238820 None:intergenic 30.0%
ATGACACAATATTACATCCT+TGG + chr4_3:51238832-51238851 Msa0645800:five_prime_UTR 30.0%
!!! AATTTTGGTTTTTCTTCTGG+TGG - chr4_3:51239215-51239234 None:intergenic 30.0%
AGAAAGAGCTTGAAAATGTA+TGG + chr4_3:51239252-51239271 Msa0645800:intron 30.0%
GTAGACATTAATCACAGTTA+AGG - chr4_3:51239304-51239323 None:intergenic 30.0%
AAAACTTGCAATGAAATGAC+AGG - chr4_3:51239620-51239639 None:intergenic 30.0%
! ACTGAGTATTTTATGCATGA+AGG + chr4_3:51239783-51239802 Msa0645800:intron 30.0%
!! CATTGACTGCATTTTTGAAA+TGG - chr4_3:51239942-51239961 None:intergenic 30.0%
! TTCAGTATTTTCTACGTAGA+AGG - chr4_3:51240070-51240089 None:intergenic 30.0%
! GGTACTGAAATCATCAATAT+TGG - chr4_3:51240093-51240112 None:intergenic 30.0%
! TCAGTACCTGATAATGATAT+AGG + chr4_3:51240105-51240124 Msa0645800:intron 30.0%
! CTTTAGCTAGTTTAGATTGA+AGG - chr4_3:51240206-51240225 None:intergenic 30.0%
! TTTTCATGTGCTTATCTGAT+AGG + chr4_3:51240362-51240381 Msa0645800:intron 30.0%
CTATCAAATATTTGTCCAGA+TGG - chr4_3:51240414-51240433 None:intergenic 30.0%
CATCTGGACAAATATTTGAT+AGG + chr4_3:51240412-51240431 Msa0645800:CDS 30.0%
AATCATGCCTAATAAGATGT+TGG + chr4_3:51240543-51240562 Msa0645800:intron 30.0%
AACTGAAAAAGGAATGATCA+AGG - chr4_3:51240657-51240676 None:intergenic 30.0%
AGATGACAGAAAACTGAAAA+AGG - chr4_3:51240668-51240687 None:intergenic 30.0%
! TTTCTGTCATCTTTCGATTT+TGG + chr4_3:51240676-51240695 Msa0645800:intron 30.0%
!!! TTTTTGAAGCTGTTGTCTTT+GGG + chr4_3:51240699-51240718 Msa0645800:intron 30.0%
ATAACTGAGCATTCTAATGA+AGG - chr4_3:51240726-51240745 None:intergenic 30.0%
ATGAGCTGTAAAATTGGAAA+GGG - chr4_3:51240796-51240815 None:intergenic 30.0%
AATGAGCTGTAAAATTGGAA+AGG - chr4_3:51240797-51240816 None:intergenic 30.0%
! TTTCCAATTTTACAGCTCAT+TGG + chr4_3:51240796-51240815 Msa0645800:intron 30.0%
TGAAAGGATTATCAAACACT+AGG - chr4_3:51240903-51240922 None:intergenic 30.0%
TAATCCTTTCAAAGACTAAC+TGG + chr4_3:51240912-51240931 Msa0645800:intron 30.0%
!! AATACCAGTTAGTCTTTGAA+AGG - chr4_3:51240919-51240938 None:intergenic 30.0%
TTTATCACCTGATATCTCAT+CGG - chr4_3:51240946-51240965 None:intergenic 30.0%
ATGAGATATCAGGTGATAAA+AGG + chr4_3:51240946-51240965 Msa0645800:intron 30.0%
!! GTCAATGCACATTTTAAGTA+TGG - chr4_3:51241165-51241184 None:intergenic 30.0%
! AATGTGCATTGACAACATAA+TGG + chr4_3:51241172-51241191 Msa0645800:intron 30.0%
TGACAACATAATGGTGTAAA+AGG + chr4_3:51241181-51241200 Msa0645800:intron 30.0%
CTGACAGTTTATTTACAGAT+TGG + chr4_3:51241232-51241251 Msa0645800:intron 30.0%
! GTGATGGTGATAAATTGAAT+TGG - chr4_3:51241471-51241490 None:intergenic 30.0%
! GACAGGTTTAATACCATTTT+AGG - chr4_3:51241631-51241650 None:intergenic 30.0%
ATAGTATATCATGGATTCTC+TGG + chr4_3:51241655-51241674 Msa0645800:three_prime_UTR 30.0%
TAAAGAGATCATATTCCTCT+TGG - chr4_3:51241684-51241703 None:intergenic 30.0%
GGATGTAATATTGTGTCATG+TGG - chr4_3:51238831-51238850 None:intergenic 35.0%
AAGTGAAAGGACTTACAAAG+TGG - chr4_3:51238890-51238909 None:intergenic 35.0%
TGAGGAAAAGAGAAAGTGAA+AGG - chr4_3:51238903-51238922 None:intergenic 35.0%
TTATGCATTGTTGGATAGTG+AGG - chr4_3:51238921-51238940 None:intergenic 35.0%
TTCTCAACAGAAATGCTTTG+AGG - chr4_3:51239032-51239051 None:intergenic 35.0%
AAGAAAGTCTCTACGTGAAT+TGG - chr4_3:51239126-51239145 None:intergenic 35.0%
AATTCACGTAGAGACTTTCT+TGG + chr4_3:51239125-51239144 Msa0645800:CDS 35.0%
!! GACTTTCTTGGATTAGCATT+AGG + chr4_3:51239137-51239156 Msa0645800:CDS 35.0%
CATTAGCAGCATCAAATGAA+TGG - chr4_3:51239181-51239200 None:intergenic 35.0%
CATTCATTTGATGCTGCTAA+TGG + chr4_3:51239179-51239198 Msa0645800:CDS 35.0%
TCACAGTTAAGGCATAGAAA+GGG - chr4_3:51239293-51239312 None:intergenic 35.0%
ATCACAGTTAAGGCATAGAA+AGG - chr4_3:51239294-51239313 None:intergenic 35.0%
CTCTTAAAACGTTTGACGAA+AGG + chr4_3:51239525-51239544 Msa0645800:intron 35.0%
ACGAAAGGACTTCCATTATA+AGG + chr4_3:51239540-51239559 Msa0645800:intron 35.0%
!! TTTATGCATGAAGGTACCTA+TGG + chr4_3:51239792-51239811 Msa0645800:intron 35.0%
TGAATCAGGTTTGCAATACA+AGG + chr4_3:51239822-51239841 Msa0645800:CDS 35.0%
AAGGATATTAAAGTTGGGCA+AGG + chr4_3:51239841-51239860 Msa0645800:CDS 35.0%
!!! TGACTGCATTTTTGAAATGG+TGG - chr4_3:51239939-51239958 None:intergenic 35.0%
GCATCAATCTCGTTCAAAAT+TGG - chr4_3:51239965-51239984 None:intergenic 35.0%
AGTTTAGATTGAAGGAAGCA+AGG - chr4_3:51240198-51240217 None:intergenic 35.0%
TGACAGAAATTTGTAATCGG+CGG - chr4_3:51240441-51240460 None:intergenic 35.0%
ATACAACAGCAAACATCACT+TGG - chr4_3:51240494-51240513 None:intergenic 35.0%
TCACACTCCAACATCTTATT+AGG - chr4_3:51240553-51240572 None:intergenic 35.0%
!!! GTTTTTGAAGCTGTTGTCTT+TGG + chr4_3:51240698-51240717 Msa0645800:intron 35.0%
TGTATGCACTGTAATGAGAA+TGG + chr4_3:51240747-51240766 Msa0645800:intron 35.0%
TCTCCAATGAGCTGTAAAAT+TGG - chr4_3:51240802-51240821 None:intergenic 35.0%
! TTTTACAGCTCATTGGAGAA+AGG + chr4_3:51240803-51240822 Msa0645800:intron 35.0%
TTATCACCTGATATCTCATC+GGG - chr4_3:51240945-51240964 None:intergenic 35.0%
GTGATAAAAGGACTTGATGA+AGG + chr4_3:51240958-51240977 Msa0645800:CDS 35.0%
! TTTTGAGCATGAAAGTAGGA+GGG + chr4_3:51240983-51241002 Msa0645800:CDS 35.0%
!! GTTTTGAATCTTGCAATGCT+GGG - chr4_3:51241071-51241090 None:intergenic 35.0%
!! TGTTTTGAATCTTGCAATGC+TGG - chr4_3:51241072-51241091 None:intergenic 35.0%
!! GTGTACTTCTAGTTTCTCAA+TGG + chr4_3:51241129-51241148 Msa0645800:intron 35.0%
!! TTCTTTTCTTGTTTCGCAGT+TGG + chr4_3:51241289-51241308 Msa0645800:intron 35.0%
TCAAATACTACTGGACTGTT+TGG - chr4_3:51241362-51241381 None:intergenic 35.0%
! GTAAGTTTGGAATATGTACC+AGG + chr4_3:51241383-51241402 Msa0645800:CDS 35.0%
AGATTCAGCTTCAATGTACT+TGG - chr4_3:51241580-51241599 None:intergenic 35.0%
CATGATATACTATCGATGAC+AGG - chr4_3:51241648-51241667 None:intergenic 35.0%
CTGTCATCGATAGTATATCA+TGG + chr4_3:51241646-51241665 Msa0645800:three_prime_UTR 35.0%
! CTTTATTCTACCCGATCTTT+TGG + chr4_3:51241699-51241718 Msa0645800:three_prime_UTR 35.0%
GAAAACAGGGAACATGTTAA+CGG + chr4_3:51241757-51241776 Msa0645800:three_prime_UTR 35.0%
! AGCTTCTGTCAGGGAATTTT+TGG - chr4_3:51239650-51239669 None:intergenic 40.0%
ACTGAACAAAGCTTCTGTCA+GGG - chr4_3:51239659-51239678 None:intergenic 40.0%
CCTGATTCAGTAGTTACCAT+AGG - chr4_3:51239811-51239830 None:intergenic 40.0%
CCTATGGTAACTACTGAATC+AGG + chr4_3:51239808-51239827 Msa0645800:CDS 40.0%
TTACACACCTGATATCCAAC+TGG - chr4_3:51239877-51239896 None:intergenic 40.0%
TAGATTGAAGGAAGCAAGGA+CGG - chr4_3:51240194-51240213 None:intergenic 40.0%
AACAATACACATGCTGACAG+AGG - chr4_3:51240318-51240337 None:intergenic 40.0%
TCATGTGCTTATCTGATAGG+TGG + chr4_3:51240365-51240384 Msa0645800:intron 40.0%
GGCTGCTAATTATGTTGCAA+TGG + chr4_3:51240386-51240405 Msa0645800:CDS 40.0%
TATGTTGCAATGGTTCCATC+TGG + chr4_3:51240396-51240415 Msa0645800:CDS 40.0%
CAACGCGAAAAATGTAAAGC+TGG - chr4_3:51240829-51240848 None:intergenic 40.0%
! CAGCTTTACATTTTTCGCGT+TGG + chr4_3:51240827-51240846 Msa0645800:CDS 40.0%
! TACATTTTTCGCGTTGGATC+TGG + chr4_3:51240833-51240852 Msa0645800:CDS 40.0%
ATTCAACCCGATGAGATATC+AGG + chr4_3:51240936-51240955 Msa0645800:intron 40.0%
CTCCTACTTTCATGCTCAAA+AGG - chr4_3:51240984-51241003 None:intergenic 40.0%
! CTTTTGAGCATGAAAGTAGG+AGG + chr4_3:51240982-51241001 Msa0645800:CDS 40.0%
GTGCAGAATTAAGGCCTTTA+GGG - chr4_3:51241319-51241338 None:intergenic 40.0%
CGTGGATGAGGAATAAACTT+AGG + chr4_3:51241412-51241431 Msa0645800:exon 40.0%
! TACCCGATCTTTTGGTCAAA+TGG + chr4_3:51241707-51241726 Msa0645800:three_prime_UTR 40.0%
CACCATTTGACCAAAAGATC+GGG - chr4_3:51241712-51241731 None:intergenic 40.0%
CCACCATTTGACCAAAAGAT+CGG - chr4_3:51241713-51241732 None:intergenic 40.0%
ATCCTTGGATATGCCTAGCA+TGG + chr4_3:51238847-51238866 Msa0645800:exon 45.0%
TACAAAGTGGAAGCAGGAGA+GGG - chr4_3:51238877-51238896 None:intergenic 45.0%
TTACAAAGTGGAAGCAGGAG+AGG - chr4_3:51238878-51238897 None:intergenic 45.0%
AGGACTTACAAAGTGGAAGC+AGG - chr4_3:51238883-51238902 None:intergenic 45.0%
! CTTTGAGGAGCAGTAAGAGA+AGG - chr4_3:51239017-51239036 None:intergenic 45.0%
AAGTGAAGTCCACAGAGACA+AGG + chr4_3:51239072-51239091 Msa0645800:CDS 45.0%
AGTGAAGTCCACAGAGACAA+GGG + chr4_3:51239073-51239092 Msa0645800:CDS 45.0%
TTTGATGCTGCTAATGGAGC+TGG + chr4_3:51239185-51239204 Msa0645800:CDS 45.0%
TTGAAGGTGACACAACTGCA+TGG - chr4_3:51239365-51239384 None:intergenic 45.0%
CACTGAACAAAGCTTCTGTC+AGG - chr4_3:51239660-51239679 None:intergenic 45.0%
!! CTGACAGAAGCTTTGTTCAG+TGG + chr4_3:51239658-51239677 Msa0645800:intron 45.0%
!! GATATCCAACTGGTGGACTA+GGG - chr4_3:51239867-51239886 None:intergenic 45.0%
!! TGATATCCAACTGGTGGACT+AGG - chr4_3:51239868-51239887 None:intergenic 45.0%
TAGTCCACCAGTTGGATATC+AGG + chr4_3:51239867-51239886 Msa0645800:CDS 45.0%
AGATTGAAGGAAGCAAGGAC+GGG - chr4_3:51240193-51240212 None:intergenic 45.0%
! GGCCTTTTGAGCATGAAAGT+AGG + chr4_3:51240979-51240998 Msa0645800:CDS 45.0%
TGAAAGTAGGAGGGAAACGT+CGG + chr4_3:51240992-51241011 Msa0645800:CDS 45.0%
AGACAGAAGCTTACTGATCC+AGG - chr4_3:51241027-51241046 None:intergenic 45.0%
GGTGCAGAATTAAGGCCTTT+AGG - chr4_3:51241320-51241339 None:intergenic 45.0%
AAAGGCCTTAATTCTGCACC+AGG + chr4_3:51241320-51241339 Msa0645800:CDS 45.0%
GTCTTCCTGGTGCAGAATTA+AGG - chr4_3:51241328-51241347 None:intergenic 45.0%
ATATGTACCAGGACTTGACG+TGG + chr4_3:51241394-51241413 Msa0645800:CDS 45.0%
! CCGATCTTTTGGTCAAATGG+TGG + chr4_3:51241710-51241729 Msa0645800:three_prime_UTR 45.0%
AGCCATGCTAGGCATATCCA+AGG - chr4_3:51238852-51238871 None:intergenic 50.0%
ACAAAGTGGAAGCAGGAGAG+GGG - chr4_3:51238876-51238895 None:intergenic 50.0%
AGTGCATTCCCTTGTCTCTG+TGG - chr4_3:51239084-51239103 None:intergenic 50.0%
CACACCTGATATCCAACTGG+TGG - chr4_3:51239874-51239893 None:intergenic 50.0%
GCGTTCAAGGGAAACTGAAC+AGG - chr4_3:51239910-51239929 None:intergenic 50.0%
GGAAAGGGTCATACTCACAC+AGG - chr4_3:51240781-51240800 None:intergenic 50.0%
! TTTTCGCGTTGGATCTGGTC+AGG + chr4_3:51240838-51240857 Msa0645800:CDS 50.0%
! AAACGTCGGCTGTACATACC+TGG + chr4_3:51241006-51241025 Msa0645800:CDS 50.0%
TCGCAGTTGGCATTCCCTAA+AGG + chr4_3:51241302-51241321 Msa0645800:intron 50.0%
ATTCTGCACCAGGAAGACCA+AGG + chr4_3:51241330-51241349 Msa0645800:CDS 50.0%
TTCTGCACCAGGAAGACCAA+GGG + chr4_3:51241331-51241350 Msa0645800:CDS 50.0%
TGCGTTCAGTCAAGGTGGAA+TGG - chr4_3:51241442-51241461 None:intergenic 50.0%
TTGACTGCGTTCAGTCAAGG+TGG - chr4_3:51241447-51241466 None:intergenic 50.0%
TGGATTCTCTGGTCTCCAAG+AGG + chr4_3:51241666-51241685 Msa0645800:three_prime_UTR 50.0%
TGGTGGAGACGAGCGTTCAA+GGG - chr4_3:51239922-51239941 None:intergenic 55.0%
! ATGGTGGAGACGAGCGTTCA+AGG - chr4_3:51239923-51239942 None:intergenic 55.0%
ACCAGGACTTGACGTGGATG+AGG + chr4_3:51241400-51241419 Msa0645800:CDS 55.0%
TCCTCATCCACGTCAAGTCC+TGG - chr4_3:51241404-51241423 None:intergenic 55.0%
GGGTTGACTGCGTTCAGTCA+AGG - chr4_3:51241450-51241469 None:intergenic 55.0%
AGGAGAGGGGAAGCCATGCT+AGG - chr4_3:51238863-51238882 None:intergenic 60.0%
CAAGGCCCTAGTCCACCAGT+TGG + chr4_3:51239859-51239878 Msa0645800:CDS 60.0%
TGCACCAGGAAGACCAAGGG+TGG + chr4_3:51241334-51241353 Msa0645800:CDS 60.0%
! GGACTGTTTGGAGCCACCCT+TGG - chr4_3:51241350-51241369 None:intergenic 60.0%
! GGAGCCACCCTTGGTCTTCC+TGG - chr4_3:51241341-51241360 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 51238777 51241787 51238777 ID=Msa0645800;Name=Msa0645800
chr4_3 mRNA 51238777 51241787 51238777 ID=Msa0645800-mRNA-1;Parent=Msa0645800;Name=Msa0645800-mRNA-1;_AED=0.02;_eAED=0.02;_QI=80|1|1|1|1|1|7|360|229
chr4_3 exon 51238777 51238893 51238777 ID=Msa0645800-mRNA-1:exon:12355;Parent=Msa0645800-mRNA-1
chr4_3 exon 51238994 51239268 51238994 ID=Msa0645800-mRNA-1:exon:12356;Parent=Msa0645800-mRNA-1
chr4_3 exon 51239805 51239888 51239805 ID=Msa0645800-mRNA-1:exon:12357;Parent=Msa0645800-mRNA-1
chr4_3 exon 51240384 51240433 51240384 ID=Msa0645800-mRNA-1:exon:12358;Parent=Msa0645800-mRNA-1
chr4_3 exon 51240811 51240859 51240811 ID=Msa0645800-mRNA-1:exon:12359;Parent=Msa0645800-mRNA-1
chr4_3 exon 51240958 51241032 51240958 ID=Msa0645800-mRNA-1:exon:12360;Parent=Msa0645800-mRNA-1
chr4_3 exon 51241308 51241787 51241308 ID=Msa0645800-mRNA-1:exon:12361;Parent=Msa0645800-mRNA-1
chr4_3 five_prime_UTR 51238777 51238856 51238777 ID=Msa0645800-mRNA-1:five_prime_utr;Parent=Msa0645800-mRNA-1
chr4_3 CDS 51238857 51238893 51238857 ID=Msa0645800-mRNA-1:cds;Parent=Msa0645800-mRNA-1
chr4_3 CDS 51238994 51239268 51238994 ID=Msa0645800-mRNA-1:cds;Parent=Msa0645800-mRNA-1
chr4_3 CDS 51239805 51239888 51239805 ID=Msa0645800-mRNA-1:cds;Parent=Msa0645800-mRNA-1
chr4_3 CDS 51240384 51240433 51240384 ID=Msa0645800-mRNA-1:cds;Parent=Msa0645800-mRNA-1
chr4_3 CDS 51240811 51240859 51240811 ID=Msa0645800-mRNA-1:cds;Parent=Msa0645800-mRNA-1
chr4_3 CDS 51240958 51241032 51240958 ID=Msa0645800-mRNA-1:cds;Parent=Msa0645800-mRNA-1
chr4_3 CDS 51241308 51241427 51241308 ID=Msa0645800-mRNA-1:cds;Parent=Msa0645800-mRNA-1
chr4_3 three_prime_UTR 51241428 51241787 51241428 ID=Msa0645800-mRNA-1:three_prime_utr;Parent=Msa0645800-mRNA-1
Gene Sequence

>Msa0645800

ATGCCTAGCATGGCTTCCCCTCTCCTGCTTCCACTTTATTCTACTTGTGGTAAAATTCCTTCTCTTACTGCTCCTCAAAGCATTTCTGTTGAGAAACTTAGAAGATTTGCTCTTAAAGTGAAGTCCACAGAGACAAGGGAATGCACTGCTAATGATATGTTTAATGCCAATTCACGTAGAGACTTTCTTGGATTAGCATTAGGAGTCTCTACTCTATTCATCCATTCATTTGATGCTGCTAATGGAGCTGGTTTGCCACCAGAAGAAAAACCAAAATTATGTGATGAAACTTGTGAGAAAGAGCTTGAAAATGTACCTATGGTAACTACTGAATCAGGTTTGCAATACAAGGATATTAAAGTTGGGCAAGGCCCTAGTCCACCAGTTGGATATCAGGTGGCTGCTAATTATGTTGCAATGGTTCCATCTGGACAAATATTTGATAGCTCATTGGAGAAAGGCCAGCTTTACATTTTTCGCGTTGGATCTGGTCAGGTGATAAAAGGACTTGATGAAGGCCTTTTGAGCATGAAAGTAGGAGGGAAACGTCGGCTGTACATACCTGGATCATTGGCATTCCCTAAAGGCCTTAATTCTGCACCAGGAAGACCAAGGGTGGCTCCAAACAGTCCAGTAGTATTTGATGTAAGTTTGGAATATGTACCAGGACTTGACGTGGATGAGGAATAA

Protein sequence

>Msa0645800

MPSMASPLLLPLYSTCGKIPSLTAPQSISVEKLRRFALKVKSTETRECTANDMFNANSRRDFLGLALGVSTLFIHSFDAANGAGLPPEEKPKLCDETCEKELENVPMVTTESGLQYKDIKVGQGPSPPVGYQVAANYVAMVPSGQIFDSSLEKGQLYIFRVGSGQVIKGLDEGLLSMKVGGKRRLYIPGSLAFPKGLNSAPGRPRVAPNSPVVFDVSLEYVPGLDVDEE*