AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0176100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0176100 MtrunA17_Chr1g0197731 98.444 771 12 0 1 771 1 771 0.0 1580
Msa0176100 MtrunA17_Chr5g0436731 33.193 238 131 6 538 755 85 314 1.56e-28 117
Msa0176100 MtrunA17_Chr1g0147601 28.244 262 164 11 516 758 66 322 2.49e-14 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0176100 AT5G04500.1 61.425 744 275 5 39 771 23 765 0.0 973
Msa0176100 AT3G55830.1 31.298 262 145 7 517 755 67 316 1.12e-25 109
Msa0176100 AT1G80290.1 27.374 179 120 3 586 755 121 298 4.84e-13 71.6
Msa0176100 AT1G80290.2 27.374 179 120 3 586 755 129 306 6.36e-13 71.2

Find 238 sgRNAs with CRISPR-Local

Find 380 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGAATCTCTTTCCCCTTT+TGG 0.113758 1_4:-62334711 Msa0176100:CDS
CCAAACCACCTTTCAGAAAA+TGG 0.124745 1_4:-62334964 Msa0176100:exon
CTTTCCTTTGCAGTGGAAAT+TGG 0.156359 1_4:-62332410 Msa0176100:CDS
AGTAAGTTGAATACAAATTT+TGG 0.174225 1_4:-62330322 Msa0176100:three_prime_UTR
GGATCCATTGCTAGCTTCTA+TGG 0.216390 1_4:-62334759 Msa0176100:CDS
TGGTATTGTAAAAGTTATTT+TGG 0.227517 1_4:-62330350 Msa0176100:three_prime_UTR
TCAATGGGTTTAAGAGAAAA+AGG 0.241800 1_4:+62334633 None:intergenic
TTTCTCCTCTGTACTTTAAT+GGG 0.244050 1_4:+62331183 None:intergenic
TGCTATACTCATTGTGCTAT+TGG 0.258919 1_4:-62331867 Msa0176100:CDS
GGCTCGGATCATAGTGGTTT+TGG 0.264045 1_4:-62332316 Msa0176100:CDS
CTCTTGTCAATGTTATAAAT+AGG 0.265701 1_4:+62332217 None:intergenic
ATGTCTGCAACATGTAAATT+TGG 0.266776 1_4:-62330634 Msa0176100:three_prime_UTR
GAAGTTTAGCCGATCGAAAA+TGG 0.272899 1_4:-62330842 Msa0176100:CDS
AGATTTCCTTCGTATTTAAA+TGG 0.276458 1_4:+62332169 None:intergenic
GATGGGGATCGTGTTCCTTC+TGG 0.287009 1_4:-62331938 Msa0176100:CDS
TTCTATCCTCGGCTTATTGC+CGG 0.292050 1_4:-62331209 Msa0176100:CDS
CCTTATGTATTTGAGCATAA+TGG 0.305640 1_4:-62332585 Msa0176100:CDS
TCTTGTCAATGTTATAAATA+GGG 0.323269 1_4:+62332218 None:intergenic
TCCTCTACCCTGATCCTTAC+CGG 0.325557 1_4:+62331380 None:intergenic
AGAAACTGTAATTCTGATTC+TGG 0.331959 1_4:-62330450 Msa0176100:three_prime_UTR
AAAACGGGCAGTTGGAGATT+TGG 0.333853 1_4:-62332285 Msa0176100:CDS
ATCACCATGCAAGGTGATAT+TGG 0.334120 1_4:-62332687 Msa0176100:CDS
AATGAGGGTTCTTGGTCTAT+TGG 0.334831 1_4:-62334675 Msa0176100:CDS
ATGTAAATTTGGTTCTATAA+TGG 0.341661 1_4:-62330623 Msa0176100:three_prime_UTR
TGGTGGTTGGATTGGTGTTA+TGG 0.341798 1_4:-62331960 Msa0176100:CDS
TGTGCATCTGTTTCTGATGC+TGG 0.345247 1_4:-62334226 Msa0176100:CDS
TCCTTTATCATTGACTATGA+TGG 0.346859 1_4:-62332355 Msa0176100:CDS
CAATGATAAAGGAATCAATA+AGG 0.348404 1_4:+62332365 None:intergenic
GGATGGTTTGTGATGATGTT+GGG 0.363890 1_4:-62330553 Msa0176100:three_prime_UTR
TGGGATGTATAGTATTAGTA+TGG 0.375704 1_4:-62330795 Msa0176100:exon
TAGCACCATTCCACGCATTT+CGG 0.380197 1_4:+62332017 None:intergenic
AACTAGCTTTCAAGAGGTAC+TGG 0.384132 1_4:-62331097 Msa0176100:CDS
CCCATCATAGTCAATGATAA+AGG 0.384298 1_4:+62332354 None:intergenic
TATTGACCTTTCAATGGATA+AGG 0.384534 1_4:+62331560 None:intergenic
CTTTGTATTCATCAGCTGTA+AGG 0.385106 1_4:+62332080 None:intergenic
GGAATCTAACTTCCTTGTCT+TGG 0.391386 1_4:-62331778 Msa0176100:CDS
CAGAGCCACCGCGTTACAAA+TGG 0.391850 1_4:+62334989 None:intergenic
CAGCGGTACCGGTAAGGATC+AGG 0.393458 1_4:-62331388 Msa0176100:CDS
GGGATGGTTTGTGATGATGT+TGG 0.393606 1_4:-62330554 Msa0176100:three_prime_UTR
GCTATACTCATTGTGCTATT+GGG 0.394366 1_4:-62331866 Msa0176100:CDS
ATTGTATTGTCCCTCTCAAT+TGG 0.397061 1_4:-62331823 Msa0176100:CDS
GAAACTGTAATTCTGATTCT+GGG 0.398249 1_4:-62330449 Msa0176100:three_prime_UTR
GGCTACAACATGATACTTAC+CGG 0.400952 1_4:-62331140 Msa0176100:CDS
AGACTCAATCCGGCGGTTCA+TGG 0.402151 1_4:-62331915 Msa0176100:CDS
AATTGGTTCATTCATAACTC+TGG 0.403047 1_4:-62331806 Msa0176100:CDS
AGAGAAACTTACAAATTCAA+TGG 0.403178 1_4:+62334617 None:intergenic
TTGGAAGCATTAGGAATAGA+AGG 0.405567 1_4:-62330524 Msa0176100:three_prime_UTR
CTCTCTAAATAATCGATTCA+AGG 0.406351 1_4:-62331351 Msa0176100:CDS
GAATCTAACTTCCTTGTCTT+GGG 0.411558 1_4:-62331777 Msa0176100:CDS
AAATATGCACGGACACATAA+AGG 0.414287 1_4:-62331161 Msa0176100:CDS
GACAGTTGATTATGTGAAAC+CGG 0.419715 1_4:-62330973 Msa0176100:CDS
AGTTTCTGAGGAATGTCTTC+AGG 0.420786 1_4:+62330466 None:intergenic
CAAACCACCTTTCAGAAAAT+GGG 0.420800 1_4:-62334963 Msa0176100:exon
CGATGATAGCGCGGCTTGGC+CGG 0.421476 1_4:-62334269 Msa0176100:CDS
ATAGTATTAGTATGGACTAA+TGG 0.424608 1_4:-62330787 Msa0176100:exon
ATAATCTTTGTAGCTGGAGT+TGG 0.425291 1_4:-62331635 Msa0176100:CDS
AATGATAAAGGAATCAATAA+GGG 0.426417 1_4:+62332366 None:intergenic
AATTCTTTGTCTCATAGAAC+AGG 0.427122 1_4:+62332712 None:intergenic
CAACATCCTGACCGGATTGT+TGG 0.428753 1_4:-62331233 Msa0176100:CDS
ATGGGTTCCGGTCAGATTAA+CGG 0.429979 1_4:-62334945 Msa0176100:CDS
ATCTTACCTCGGAGAAATGT+TGG 0.431402 1_4:+62331695 None:intergenic
AGTTTCAAAGAGTACGGATA+AGG 0.433171 1_4:-62332664 Msa0176100:CDS
GGAATAGAAGGATGGGCAAA+TGG 0.438464 1_4:-62330512 Msa0176100:three_prime_UTR
GGTTGGATTGGTGTTATGGA+TGG 0.439578 1_4:-62331956 Msa0176100:CDS
TGGGAGCTCGCAATGGAGGC+AGG 0.442449 1_4:-62332192 Msa0176100:CDS
GGATTGTTGGATTCTATCCT+CGG 0.443384 1_4:-62331220 Msa0176100:CDS
AACGTCTTCCGTCTGGTGGT+TGG 0.445900 1_4:-62331973 Msa0176100:CDS
TTGATTATGTGAAACCGGCT+TGG 0.446271 1_4:-62330968 Msa0176100:CDS
CCATTGCTAGCTTCTATGGT+TGG 0.451469 1_4:-62334755 Msa0176100:CDS
CGACAGTAGGAGAGATGGTT+GGG 0.452982 1_4:-62330814 Msa0176100:CDS
TGATTATGTGAAACCGGCTT+GGG 0.453603 1_4:-62330967 Msa0176100:CDS
CTTACTATAATCTTTGTAGC+TGG 0.454212 1_4:-62331641 Msa0176100:CDS
TATAACATTGACAAGAGCTT+GGG 0.454360 1_4:-62332211 Msa0176100:CDS
CAAAGAAATTGAAGTACCAT+TGG 0.455009 1_4:-62332062 Msa0176100:CDS
TGCGAGTATTGACCTTTCAA+TGG 0.455048 1_4:+62331554 None:intergenic
ATGATGACAATGAGGGTTCT+TGG 0.455448 1_4:-62334683 Msa0176100:CDS
GAGAAACTTACAAATTCAAT+GGG 0.460045 1_4:+62334618 None:intergenic
AAGTTTAGCCGATCGAAAAT+GGG 0.461026 1_4:-62330841 Msa0176100:CDS
TCTATCCTCGGCTTATTGCC+GGG 0.461511 1_4:-62331208 Msa0176100:CDS
TCTTACCTCGGAGAAATGTT+GGG 0.461948 1_4:+62331696 None:intergenic
AATTATGCCTCAAAACCCTT+GGG 0.463371 1_4:-62330576 Msa0176100:three_prime_UTR
CTTCCGTCTGGTGGTTGGAT+TGG 0.464986 1_4:-62331968 Msa0176100:CDS
GTTGGATTGGTGTTATGGAT+GGG 0.465211 1_4:-62331955 Msa0176100:CDS
CTCGGAGAAATGTTGGGACT+CGG 0.469842 1_4:+62331702 None:intergenic
TTGGATTGGTGTTATGGATG+GGG 0.476704 1_4:-62331954 Msa0176100:CDS
CCTTTATCATTGACTATGAT+GGG 0.476834 1_4:-62332354 Msa0176100:CDS
AAAGAAATTGAAGTACCATT+GGG 0.480045 1_4:-62332061 Msa0176100:CDS
ACCACCAGACGGAAGACGTT+GGG 0.480499 1_4:+62331976 None:intergenic
CCATTATGCTCAAATACATA+AGG 0.483104 1_4:+62332585 None:intergenic
TTTGTATTCATCAGCTGTAA+GGG 0.484731 1_4:+62332081 None:intergenic
TTGACTATGATGGGAAGTAT+TGG 0.487593 1_4:-62332345 Msa0176100:CDS
ACCTTTCAGAAAATGGGTTC+CGG 0.488909 1_4:-62334957 Msa0176100:exon
AAATTATGCCTCAAAACCCT+TGG 0.489743 1_4:-62330577 Msa0176100:three_prime_UTR
GGGATGCAATTGGAAGCATT+AGG 0.490007 1_4:-62330533 Msa0176100:three_prime_UTR
TGATGATGTTGGGATGCAAT+TGG 0.491252 1_4:-62330543 Msa0176100:three_prime_UTR
AAGATGCCAATCCTCATTCA+AGG 0.491489 1_4:+62332614 None:intergenic
CGAAGGAAATCTTTACCGTA+TGG 0.492098 1_4:-62332158 Msa0176100:CDS
GATGCCCAACGTCTTCCGTC+TGG 0.493272 1_4:-62331980 Msa0176100:CDS
GAATCTAGATCACTAACTTC+CGG 0.493581 1_4:+62331410 None:intergenic
TGTCATCATGACAACCAAAA+GGG 0.495807 1_4:+62334697 None:intergenic
AAATCTTTACCGTATGGGTC+AGG 0.496835 1_4:-62332152 Msa0176100:CDS
TTATAACATTGACAAGAGCT+TGG 0.499394 1_4:-62332212 Msa0176100:CDS
GGTCAGATTAACGGCGGGGT+AGG 0.499775 1_4:-62334936 Msa0176100:CDS
CAGATTAACGGCGGGGTAGG+CGG 0.499877 1_4:-62334933 Msa0176100:CDS
TTGTCATCATGACAACCAAA+AGG 0.500668 1_4:+62334696 None:intergenic
ATTAACGGCGGGGTAGGCGG+CGG 0.501296 1_4:-62334930 Msa0176100:CDS
GTGCTATTGGGTGTGTTGCT+CGG 0.501820 1_4:-62331854 Msa0176100:CDS
GCAATTCACCTCTCGGTCCA+TGG 0.502000 1_4:-62332258 Msa0176100:CDS
TGATCTAGATTCAGCGGTAC+CGG 0.505621 1_4:-62331399 Msa0176100:CDS
TTTCAAGAGGTACTGGGGAG+AGG 0.505985 1_4:-62331090 Msa0176100:CDS
TGAATCAATAAATGCTGCAC+CGG 0.512023 1_4:+62331121 None:intergenic
ATTGGTTCATTCATAACTCT+GGG 0.512978 1_4:-62331805 Msa0176100:CDS
GGGTCAGCAACAAAATTACT+TGG 0.515463 1_4:+62334199 None:intergenic
CAGGACTGTGGTGATACGTA+TGG 0.516883 1_4:-62332133 Msa0176100:CDS
ACCGGTAAGGATCAGGGTAG+AGG 0.518173 1_4:-62331381 Msa0176100:CDS
AGAGCCACCGCGTTACAAAT+GGG 0.519798 1_4:+62334990 None:intergenic
ACTAGGAATTGCCTTGAATG+AGG 0.521328 1_4:-62332625 Msa0176100:CDS
TAGCAATGGATCCAAAGAAA+AGG 0.521642 1_4:+62334769 None:intergenic
GTTTCAAAGAGTACGGATAA+GGG 0.523002 1_4:-62332663 Msa0176100:CDS
CATTGCACTTTCCTTTGCAG+TGG 0.523498 1_4:-62332417 Msa0176100:CDS
TATTGGAGTTTCAAAGAGTA+CGG 0.524365 1_4:-62332670 Msa0176100:CDS
TAGAATCCAACAATCCGGTC+AGG 0.527675 1_4:+62331227 None:intergenic
GAAGAACCTTATCCATTGAA+AGG 0.528597 1_4:-62331566 Msa0176100:CDS
TGTATTTGAGCATAATGGCC+AGG 0.530888 1_4:-62332580 Msa0176100:intron
TTCCTTCTGGAGACTCAATC+CGG 0.531875 1_4:-62331925 Msa0176100:CDS
TAATGTCGTCATCGAGCTCA+AGG 0.532235 1_4:+62331300 None:intergenic
GAATTGCCTTGAATGAGGAT+TGG 0.533054 1_4:-62332620 Msa0176100:CDS
GAGAGGAAGCTAAGCAAGGG+AGG 0.533300 1_4:-62331073 Msa0176100:CDS
GATAATGCACCTTCGTGTTG+CGG 0.533746 1_4:+62330907 None:intergenic
TCTGTACTTTAATGGGCTCC+CGG 0.533855 1_4:+62331190 None:intergenic
GTGATATGAGTATGAAGTGT+TGG 0.534977 1_4:-62334869 Msa0176100:CDS
GAAAATGGGGATTCGACAGT+AGG 0.535860 1_4:-62330827 Msa0176100:CDS
GCATAATGCTTGTGCTAGGA+GGG 0.541579 1_4:-62331669 Msa0176100:CDS
CATTATGCTTTATCTTACCT+CGG 0.542422 1_4:+62331684 None:intergenic
TAGATTCAGCGGTACCGGTA+AGG 0.543691 1_4:-62331394 Msa0176100:CDS
AATCAGAATTACAGTTTCTG+AGG 0.544271 1_4:+62330454 None:intergenic
GAAAGAGATTCATGAACAGA+AGG 0.544334 1_4:+62334720 None:intergenic
TCGACAGTAGGAGAGATGGT+TGG 0.545034 1_4:-62330815 Msa0176100:CDS
ATTCAAAACTAGCTTTCAAG+AGG 0.546190 1_4:-62331103 Msa0176100:CDS
TCAATCCGGCGGTTCATGGT+TGG 0.548450 1_4:-62331911 Msa0176100:CDS
AGCTAAGCAAGGGAGGGAAG+TGG 0.548606 1_4:-62331066 Msa0176100:CDS
ACTAGCTTTCAAGAGGTACT+GGG 0.549497 1_4:-62331096 Msa0176100:CDS
TGAGTATGAAGTGTTGGTGT+AGG 0.549917 1_4:-62334863 Msa0176100:CDS
ATCACAGATATATATGATGC+CGG 0.552195 1_4:-62332476 Msa0176100:intron
GTCACCACAGGATTCGCTAC+CGG 0.553989 1_4:+62334250 None:intergenic
GCCCAACGTCTTCCGTCTGG+TGG 0.557248 1_4:-62331977 Msa0176100:CDS
TGGTACAGCAATTCACCTCT+CGG 0.557368 1_4:-62332265 Msa0176100:CDS
ATGCCGGAAGGGAGTAAAAG+AGG 0.559467 1_4:-62332460 Msa0176100:CDS
TGGTGATACGTATGGGAGAC+GGG 0.560756 1_4:-62332125 Msa0176100:CDS
GAGGATAGAATCCAACAATC+CGG 0.563211 1_4:+62331222 None:intergenic
AGCATAATGCTTGTGCTAGG+AGG 0.563853 1_4:-62331670 Msa0176100:CDS
TACCCCGCCGTTAATCTGAC+CGG 0.564408 1_4:+62334938 None:intergenic
TAAAGCATAATGCTTGTGCT+AGG 0.565788 1_4:-62331673 Msa0176100:CDS
TCATTCATAACTCTGGGAAG+AGG 0.566130 1_4:-62331799 Msa0176100:CDS
AAGCATTAGGAATAGAAGGA+TGG 0.570766 1_4:-62330520 Msa0176100:three_prime_UTR
CGAACGATGATAGCGCGGCT+TGG 0.572568 1_4:-62334273 Msa0176100:CDS
AAGAGCCGAAATGCGTGGAA+TGG 0.573439 1_4:-62332022 Msa0176100:CDS
GTTCCACAGGCGAGCATCGT+AGG 0.573695 1_4:+62331511 None:intergenic
AACTCCAATATCACCTTGCA+TGG 0.573916 1_4:+62332683 None:intergenic
CGTTCTCTTCAAAAGTAAGA+CGG 0.576152 1_4:-62331742 Msa0176100:CDS
GTTGCGGCTAATCGCTGCAC+CGG 0.576470 1_4:+62330923 None:intergenic
CACAACCAACCATGAACCGC+CGG 0.576997 1_4:+62331906 None:intergenic
GTGGAACAAGGGAATCCCTC+CGG 0.579260 1_4:-62331429 Msa0176100:CDS
AAGAATTCAATCACCATGCA+AGG 0.579369 1_4:-62332696 Msa0176100:CDS
AGCATTAGGAATAGAAGGAT+GGG 0.579569 1_4:-62330519 Msa0176100:three_prime_UTR
GGAGCAACATGGCAGCAACT+AGG 0.582780 1_4:-62332642 Msa0176100:CDS
GTATGAAGTGTTGGTGTAGG+TGG 0.583861 1_4:-62334860 Msa0176100:CDS
AAGAGCTTGGGAGCTCGCAA+TGG 0.585420 1_4:-62332199 Msa0176100:CDS
CATACATCTTCAAGTTCCAC+AGG 0.588362 1_4:+62331498 None:intergenic
CAGATATATATGATGCCGGA+AGG 0.589587 1_4:-62332472 Msa0176100:CDS
TGGGGAGAGGAAGCTAAGCA+AGG 0.590285 1_4:-62331077 Msa0176100:CDS
GTTCCGGTCAGATTAACGGC+GGG 0.590294 1_4:-62334941 Msa0176100:CDS
GATCGTTGTGGTGTGGAACA+AGG 0.592038 1_4:-62331441 Msa0176100:CDS
AGCTTGGGAGCTCGCAATGG+AGG 0.592698 1_4:-62332196 Msa0176100:CDS
GACGTTGGGCATCTAAGTGA+TGG 0.595031 1_4:+62331990 None:intergenic
TCTGGCGTCAACATCCTGAC+CGG 0.596046 1_4:-62331241 Msa0176100:CDS
AGGACTGTGGTGATACGTAT+GGG 0.601094 1_4:-62332132 Msa0176100:CDS
ATGATAAAGGAATCAATAAG+GGG 0.606565 1_4:+62332367 None:intergenic
GGGGAGAGGAAGCTAAGCAA+GGG 0.608405 1_4:-62331076 Msa0176100:CDS
GGCAGGCCATTTAAATACGA+AGG 0.608753 1_4:-62332175 Msa0176100:CDS
GGTTGTCATGATGACAATGA+GGG 0.609801 1_4:-62334690 Msa0176100:CDS
AGCGATTAGCCGCAACACGA+AGG 0.609845 1_4:-62330916 Msa0176100:CDS
AGCGGTACCGGTAAGGATCA+GGG 0.609885 1_4:-62331387 Msa0176100:CDS
TTATGCCTCAAAACCCTTGG+GGG 0.612517 1_4:-62330574 Msa0176100:three_prime_UTR
CGCCGGATTGAGTCTCCAGA+AGG 0.613527 1_4:+62331923 None:intergenic
TACCGTATGGGTCAGGACTG+TGG 0.613693 1_4:-62332145 Msa0176100:CDS
GAAGTGTCGATAGCCCAAGC+CGG 0.614580 1_4:+62330954 None:intergenic
GAAGGAAATCTTTACCGTAT+GGG 0.615740 1_4:-62332157 Msa0176100:CDS
TTCCGGTCAGATTAACGGCG+GGG 0.616814 1_4:-62334940 Msa0176100:CDS
ATGTTGGGACTCGGTTCACG+CGG 0.617024 1_4:+62331711 None:intergenic
ATTTGGTCTTTCCCAAGACA+AGG 0.619015 1_4:+62331766 None:intergenic
GTGGTGATACGTATGGGAGA+CGG 0.619253 1_4:-62332126 Msa0176100:CDS
TTCTGTGTCTGAGATCGTTG+TGG 0.621604 1_4:-62331453 Msa0176100:CDS
TGACCTACGATGCTCGCCTG+TGG 0.622217 1_4:-62331514 Msa0176100:CDS
TTGTATGAACTGTCAAATGC+TGG 0.624256 1_4:-62335016 Msa0176100:five_prime_UTR
GTCATCATGACAACCAAAAG+GGG 0.624661 1_4:+62334698 None:intergenic
GGATTCGACAGTAGGAGAGA+TGG 0.626958 1_4:-62330819 Msa0176100:CDS
AAACTGTAATTCTGATTCTG+GGG 0.627313 1_4:-62330448 Msa0176100:three_prime_UTR
AGATATATATGATGCCGGAA+GGG 0.631328 1_4:-62332471 Msa0176100:CDS
AACCACCAGACGGAAGACGT+TGG 0.631744 1_4:+62331975 None:intergenic
TATGAATGAACCAATTGAGA+GGG 0.632355 1_4:+62331813 None:intergenic
AGTTTAGCCGATCGAAAATG+GGG 0.632696 1_4:-62330840 Msa0176100:CDS
CAAACAAGAGCCGAAATGCG+TGG 0.635974 1_4:-62332027 Msa0176100:CDS
TGGTTGTCATGATGACAATG+AGG 0.636031 1_4:-62334691 Msa0176100:CDS
ACAGATGCACAAGTCACCAC+AGG 0.637261 1_4:+62334238 None:intergenic
AGAGGAAGCTAAGCAAGGGA+GGG 0.637342 1_4:-62331072 Msa0176100:CDS
CACCACAGTCCTGACCCATA+CGG 0.637381 1_4:+62332143 None:intergenic
ATTATGCCTCAAAACCCTTG+GGG 0.639024 1_4:-62330575 Msa0176100:three_prime_UTR
TCTCATACTAACAACGGTGG+TGG 0.643406 1_4:-62334906 Msa0176100:CDS
TAAGCAAGGGAGGGAAGTGG+TGG 0.643612 1_4:-62331063 Msa0176100:CDS
ATCGTTGTGGTGTGGAACAA+GGG 0.644387 1_4:-62331440 Msa0176100:CDS
TTATGAATGAACCAATTGAG+AGG 0.646864 1_4:+62331812 None:intergenic
TCTAGATCACTAACTTCCGG+AGG 0.648134 1_4:+62331413 None:intergenic
GCGACCCATTTGTAACGCGG+TGG 0.650964 1_4:-62334994 Msa0176100:five_prime_UTR
CTAGATCACTAACTTCCGGA+GGG 0.652302 1_4:+62331414 None:intergenic
CAAATGCTAGTTCATCGTCA+AGG 0.655114 1_4:-62330995 Msa0176100:CDS
GGAGTTGGATTGATGTGCGT+AGG 0.660500 1_4:-62331620 Msa0176100:CDS
AGTTAGTGATCTAGATTCAG+CGG 0.661489 1_4:-62331405 Msa0176100:CDS
CCAACCATAGAAGCTAGCAA+TGG 0.663121 1_4:+62334755 None:intergenic
TGTCTGAGATCGTTGTGGTG+TGG 0.663302 1_4:-62331448 Msa0176100:CDS
ACACCAATCCAACCACCAGA+CGG 0.667048 1_4:+62331965 None:intergenic
TTTGACTCAACAAAGCCCAA+TGG 0.669676 1_4:+62332046 None:intergenic
GGGCTCCCGGCAATAAGCCG+AGG 0.671052 1_4:+62331203 None:intergenic
TGAGGTTTCCATGGACCGAG+AGG 0.673472 1_4:+62332250 None:intergenic
GGCGGTTCTCATACTAACAA+CGG 0.677094 1_4:-62334912 Msa0176100:CDS
TGTTGGGACTCGGTTCACGC+GGG 0.677835 1_4:+62331712 None:intergenic
CTAGCTTTCAAGAGGTACTG+GGG 0.677896 1_4:-62331095 Msa0176100:CDS
CTGGCGACCCATTTGTAACG+CGG 0.684847 1_4:-62334997 Msa0176100:five_prime_UTR
CTTCTGGAGACTCAATCCGG+CGG 0.689338 1_4:-62331922 Msa0176100:CDS
TGTATCGAACGATGATAGCG+CGG 0.689557 1_4:-62334278 Msa0176100:CDS
ACATGTGATGATGTTGAGCG+AGG 0.706003 1_4:-62331272 Msa0176100:CDS
GCATTTGACAGTTCATACAA+CGG 0.707966 1_4:+62335019 None:intergenic
TTGGCCGGTAGCGAATCCTG+TGG 0.708560 1_4:-62334254 Msa0176100:CDS
GGGAGCCCATTAAAGTACAG+AGG 0.710310 1_4:-62331188 Msa0176100:CDS
GGTTCCGGTCAGATTAACGG+CGG 0.723354 1_4:-62334942 Msa0176100:CDS
GTACGGATAAGGGAGCAACA+TGG 0.724011 1_4:-62332653 Msa0176100:CDS
CGAGTCCCAACATTTCTCCG+AGG 0.734337 1_4:-62331701 Msa0176100:CDS
GGTTCTCATACTAACAACGG+TGG 0.740200 1_4:-62334909 Msa0176100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAACAATATGTATATAAAAA+AGG + chr1_4:62331397-62331416 None:intergenic 10.0%
!! ATATAAAAAATAAAATACCT+AGG + chr1_4:62332638-62332657 None:intergenic 10.0%
!!! TAAATTTACTTTATTTTTCA+CGG + chr1_4:62332885-62332904 None:intergenic 10.0%
!! AAATAAAAAAAATCACAAAT+GGG + chr1_4:62334757-62334776 None:intergenic 10.0%
!! AAAATAAAAAAAATCACAAA+TGG + chr1_4:62334758-62334777 None:intergenic 10.0%
!!! AATGAGTTTTTTTTTTTAAC+TGG - chr1_4:62331043-62331062 Msa0176100:CDS 15.0%
!!! ATGAGTTTTTTTTTTTAACT+GGG - chr1_4:62331044-62331063 Msa0176100:CDS 15.0%
!!! TGATAAAGATTCTTAATTTT+AGG - chr1_4:62331738-62331757 Msa0176100:CDS 15.0%
!! AAAGTAAAACTAAATAATAC+AGG - chr1_4:62331940-62331959 Msa0176100:CDS 15.0%
!! AAGTAAAACTAAATAATACA+GGG - chr1_4:62331941-62331960 Msa0176100:CDS 15.0%
!! GTAGGATTTAAAAATATTTA+TGG - chr1_4:62333829-62333848 Msa0176100:intron 15.0%
!!! TGTGATTTTTTTTATTTTAG+AGG - chr1_4:62334760-62334779 Msa0176100:CDS 15.0%
!!! GTGATTTTTTTTATTTTAGA+GGG - chr1_4:62334761-62334780 Msa0176100:CDS 15.0%
!!! GGTATTTGTTTTTATGATTT+TGG - chr1_4:62331065-62331084 Msa0176100:CDS 20.0%
!!! TTTTTATGATTTTGGTTTGA+GGG - chr1_4:62331073-62331092 Msa0176100:CDS 20.0%
!! TTACCTGAATAAAAAGAAAA+GGG + chr1_4:62331255-62331274 None:intergenic 20.0%
!! ATAAATGAGATGAAAGTTTA+TGG - chr1_4:62331573-62331592 Msa0176100:CDS 20.0%
!! CAAAAAATTTAGTTGCAATA+GGG - chr1_4:62331808-62331827 Msa0176100:CDS 20.0%
!! AATGAAACTTCTCTAAATTT+AGG - chr1_4:62332137-62332156 Msa0176100:CDS 20.0%
!!! TCATTGTTTTCTCATTTTTT+TGG - chr1_4:62332396-62332415 Msa0176100:CDS 20.0%
!!! CATTGTTTTCTCATTTTTTT+GGG - chr1_4:62332397-62332416 Msa0176100:CDS 20.0%
!! AATGATAAAGGAATCAATAA+GGG + chr1_4:62333068-62333087 None:intergenic 20.0%
!! TCTTGTCAATGTTATAAATA+GGG + chr1_4:62333216-62333235 None:intergenic 20.0%
!! GGATTTAAAAATATTTATGG+TGG - chr1_4:62333832-62333851 Msa0176100:intron 20.0%
!! AAAAATATTTATGGTGGTAA+TGG - chr1_4:62333838-62333857 Msa0176100:intron 20.0%
!!! CAATTGTCTAATGAAATTTT+CGG - chr1_4:62334557-62334576 Msa0176100:intron 20.0%
!!! TTTTTTTTTAGTTAGGTCTT+TGG - chr1_4:62334671-62334690 Msa0176100:CDS 20.0%
!!! TATTTTGTTACATCTTTTGT+GGG - chr1_4:62334706-62334725 Msa0176100:CDS 20.0%
!!! ATGTAAATTTGGTTCTATAA+TGG - chr1_4:62334808-62334827 Msa0176100:CDS 20.0%
!!! TGGTATTGTAAAAGTTATTT+TGG - chr1_4:62335081-62335100 Msa0176100:five_prime_UTR 20.0%
!!! AGTAAGTTGAATACAAATTT+TGG - chr1_4:62335109-62335128 Msa0176100:five_prime_UTR 20.0%
!!! TTTCGCTTTTTTGTTGTTTT+TGG + chr1_4:62330390-62330409 None:intergenic 25.0%
! GAGAAACTTACAAATTCAAT+GGG + chr1_4:62330816-62330835 None:intergenic 25.0%
! AGAGAAACTTACAAATTCAA+TGG + chr1_4:62330817-62330836 None:intergenic 25.0%
! AAATTCACAACACATAACAA+GGG + chr1_4:62330984-62331003 None:intergenic 25.0%
! AAAATTCACAACACATAACA+AGG + chr1_4:62330985-62331004 None:intergenic 25.0%
!! TTGTTATGTGTTGTGAATTT+TGG - chr1_4:62330984-62331003 Msa0176100:CDS 25.0%
!!! GTTTTTATGATTTTGGTTTG+AGG - chr1_4:62331072-62331091 Msa0176100:CDS 25.0%
!!! TTTTATGATTTTGGTTTGAG+GGG - chr1_4:62331074-62331093 Msa0176100:CDS 25.0%
! CTTACCTGAATAAAAAGAAA+AGG + chr1_4:62331256-62331275 None:intergenic 25.0%
! TCTTTATTCCTTTGTATATC+TGG - chr1_4:62331293-62331312 Msa0176100:CDS 25.0%
! ATAAAAAAGGTGAGAATTTC+TGG + chr1_4:62331384-62331403 None:intergenic 25.0%
! ATCAAGCTTCAATTAATTGA+GGG + chr1_4:62331459-62331478 None:intergenic 25.0%
! TATCAAGCTTCAATTAATTG+AGG + chr1_4:62331460-62331479 None:intergenic 25.0%
! TCTGATTATGACATCATATA+TGG - chr1_4:62331550-62331569 Msa0176100:CDS 25.0%
! TTATGTTGTTCTTATCTACA+AGG - chr1_4:62331616-62331635 Msa0176100:CDS 25.0%
!!! AGGTTTTATTCTTAACTACA+AGG - chr1_4:62331636-62331655 Msa0176100:CDS 25.0%
! CTTATAGCAAAATCATCAAT+TGG - chr1_4:62331687-62331706 Msa0176100:CDS 25.0%
! TATATCTATCTATGTGTTGA+AGG - chr1_4:62331778-62331797 Msa0176100:CDS 25.0%
!!! CCTATTGCAACTAAATTTTT+TGG + chr1_4:62331810-62331829 None:intergenic 25.0%
! CCAAAAAATTTAGTTGCAAT+AGG - chr1_4:62331807-62331826 Msa0176100:CDS 25.0%
! TTTCCTTTCTCAAACAAAAT+AGG + chr1_4:62332097-62332116 None:intergenic 25.0%
! TTCTCTAAATTTAGGAACAA+AGG - chr1_4:62332145-62332164 Msa0176100:CDS 25.0%
! ATGATAAAGGAATCAATAAG+GGG + chr1_4:62333067-62333086 None:intergenic 25.0%
! CAATGATAAAGGAATCAATA+AGG + chr1_4:62333069-62333088 None:intergenic 25.0%
! CTCTTGTCAATGTTATAAAT+AGG + chr1_4:62333217-62333236 None:intergenic 25.0%
! AGATTTCCTTCGTATTTAAA+TGG + chr1_4:62333265-62333284 None:intergenic 25.0%
!! AAAGAAATTGAAGTACCATT+GGG - chr1_4:62333370-62333389 Msa0176100:intron 25.0%
!! ATAGTATTAGTATGGACTAA+TGG - chr1_4:62334644-62334663 Msa0176100:CDS 25.0%
!!! TGGAGTGTTTTTTTTTAGTT+AGG - chr1_4:62334664-62334683 Msa0176100:CDS 25.0%
!! GTATTTTGTTACATCTTTTG+TGG - chr1_4:62334705-62334724 Msa0176100:CDS 25.0%
!!! TCAATTGTTGCTTTTTTACT+TGG - chr1_4:62335009-62335028 Msa0176100:five_prime_UTR 25.0%
!!! CTTAGAAATTGATTTTGACT+TGG - chr1_4:62335057-62335076 Msa0176100:five_prime_UTR 25.0%
!!! TATAACCGTTTTTTCTCTTC+TGG - chr1_4:62330615-62330634 Msa0176100:three_prime_UTR 30.0%
! TTTGCTTGTTTCCTTTTCTT+TGG - chr1_4:62330651-62330670 Msa0176100:three_prime_UTR 30.0%
! TGGTCTATTGGAATTTTCTA+TGG - chr1_4:62330768-62330787 Msa0176100:three_prime_UTR 30.0%
! TCAATGGGTTTAAGAGAAAA+AGG + chr1_4:62330801-62330820 None:intergenic 30.0%
!! TGGATTTTGTGTTTGTTACA+TGG - chr1_4:62331097-62331116 Msa0176100:CDS 30.0%
! TGACCCTTTTCTTTTTATTC+AGG - chr1_4:62331249-62331268 Msa0176100:CDS 30.0%
CTTGATATGAGAATGTTACA+TGG - chr1_4:62331473-62331492 Msa0176100:CDS 30.0%
AATGAGATGAAAGTTTATGG+TGG - chr1_4:62331576-62331595 Msa0176100:CDS 30.0%
ATGAGATGAAAGTTTATGGT+GGG - chr1_4:62331577-62331596 Msa0176100:CDS 30.0%
!!! ATCAATTGGTTTTACTGCTA+AGG - chr1_4:62331701-62331720 Msa0176100:CDS 30.0%
GTTATTTATCAACCAAGTGA+TGG + chr1_4:62331863-62331882 None:intergenic 30.0%
!! TCACTTGGTTGATAAATAAC+TGG - chr1_4:62331863-62331882 Msa0176100:CDS 30.0%
CTTTCTCAAACAAAATAGGA+TGG + chr1_4:62332093-62332112 None:intergenic 30.0%
!! CATCCTATTTTGTTTGAGAA+AGG - chr1_4:62332091-62332110 Msa0176100:CDS 30.0%
!! AATTGCACTGTTTTTCTAGA+AGG - chr1_4:62332196-62332215 Msa0176100:CDS 30.0%
! AGTGGTCATTTAAAGTGTTT+AGG - chr1_4:62332235-62332254 Msa0176100:CDS 30.0%
! AAAGTGTTTAGGATCTGTAT+TGG - chr1_4:62332246-62332265 Msa0176100:CDS 30.0%
! TTTTATCAGAACATGTTTGC+AGG + chr1_4:62332288-62332307 None:intergenic 30.0%
AGAAAACAATGAAGCAAAAG+AGG + chr1_4:62332388-62332407 None:intergenic 30.0%
!!! ACTGATGTTTTGACTTAGTT+TGG + chr1_4:62332444-62332463 None:intergenic 30.0%
ACATGAACATGAACATCTAT+AGG + chr1_4:62332513-62332532 None:intergenic 30.0%
ACTCGTTAATCACATTATTG+AGG - chr1_4:62332601-62332620 Msa0176100:CDS 30.0%
TAATGTCAATATGAGTGAAC+AGG + chr1_4:62332677-62332696 None:intergenic 30.0%
TCATATTGACATTACAATCC+AGG - chr1_4:62332683-62332702 Msa0176100:CDS 30.0%
CATATTGACATTACAATCCA+GGG - chr1_4:62332684-62332703 Msa0176100:CDS 30.0%
AATTCTTTGTCTCATAGAAC+AGG + chr1_4:62332722-62332741 None:intergenic 30.0%
TATTGGAGTTTCAAAGAGTA+CGG - chr1_4:62332761-62332780 Msa0176100:intron 30.0%
CCATTATGCTCAAATACATA+AGG + chr1_4:62332849-62332868 None:intergenic 30.0%
CCTTATGTATTTGAGCATAA+TGG - chr1_4:62332846-62332865 Msa0176100:intron 30.0%
ATCACAGATATATATGATGC+CGG - chr1_4:62332955-62332974 Msa0176100:intron 30.0%
! TCCTTTATCATTGACTATGA+TGG - chr1_4:62333076-62333095 Msa0176100:intron 30.0%
! CCTTTATCATTGACTATGAT+GGG - chr1_4:62333077-62333096 Msa0176100:intron 30.0%
! TAAATAGGGTTTTTCTTGTG+AGG + chr1_4:62333202-62333221 None:intergenic 30.0%
TTATAACATTGACAAGAGCT+TGG - chr1_4:62333219-62333238 Msa0176100:intron 30.0%
TATAACATTGACAAGAGCTT+GGG - chr1_4:62333220-62333239 Msa0176100:intron 30.0%
TTTGTATTCATCAGCTGTAA+GGG + chr1_4:62333353-62333372 None:intergenic 30.0%
! CAAAGAAATTGAAGTACCAT+TGG - chr1_4:62333369-62333388 Msa0176100:intron 30.0%
TATGAATGAACCAATTGAGA+GGG + chr1_4:62333621-62333640 None:intergenic 30.0%
TTATGAATGAACCAATTGAG+AGG + chr1_4:62333622-62333641 None:intergenic 30.0%
! AATTGGTTCATTCATAACTC+TGG - chr1_4:62333625-62333644 Msa0176100:intron 30.0%
! ATTGGTTCATTCATAACTCT+GGG - chr1_4:62333626-62333645 Msa0176100:intron 30.0%
CATTATGCTTTATCTTACCT+CGG + chr1_4:62333750-62333769 None:intergenic 30.0%
CTTACTATAATCTTTGTAGC+TGG - chr1_4:62333790-62333809 Msa0176100:intron 30.0%
TATTGACCTTTCAATGGATA+AGG + chr1_4:62333874-62333893 None:intergenic 30.0%
! CTCTCTAAATAATCGATTCA+AGG - chr1_4:62334080-62334099 Msa0176100:intron 30.0%
TTTCTCCTCTGTACTTTAAT+GGG + chr1_4:62334251-62334270 None:intergenic 30.0%
! TTTTCTCCTCTGTACTTTAA+TGG + chr1_4:62334252-62334271 None:intergenic 30.0%
!! ATTCAAAACTAGCTTTCAAG+AGG - chr1_4:62334328-62334347 Msa0176100:intron 30.0%
! ATGAAATTTTCGGAGATGTA+TGG - chr1_4:62334567-62334586 Msa0176100:intron 30.0%
TGGGATGTATAGTATTAGTA+TGG - chr1_4:62334636-62334655 Msa0176100:CDS 30.0%
!!! TTTTTTAGTTAGGTCTTTGG+TGG - chr1_4:62334674-62334693 Msa0176100:CDS 30.0%
ATGTCTGCAACATGTAAATT+TGG - chr1_4:62334797-62334816 Msa0176100:CDS 30.0%
AATCAGAATTACAGTTTCTG+AGG + chr1_4:62334980-62334999 None:intergenic 30.0%
AGAAACTGTAATTCTGATTC+TGG - chr1_4:62334981-62335000 Msa0176100:five_prime_UTR 30.0%
GAAACTGTAATTCTGATTCT+GGG - chr1_4:62334982-62335001 Msa0176100:five_prime_UTR 30.0%
AAACTGTAATTCTGATTCTG+GGG - chr1_4:62334983-62335002 Msa0176100:five_prime_UTR 30.0%
!!! GAAATTGATTTTGACTTGGT+TGG - chr1_4:62335061-62335080 Msa0176100:five_prime_UTR 30.0%
!! CTCTCTAGGAATTTTGACAA+AGG + chr1_4:62330354-62330373 None:intergenic 35.0%
GCATTTGACAGTTCATACAA+CGG + chr1_4:62330415-62330434 None:intergenic 35.0%
TTGTATGAACTGTCAAATGC+TGG - chr1_4:62330415-62330434 Msa0176100:three_prime_UTR 35.0%
!! CATTTTCTGAAAGGTGGTTT+GGG + chr1_4:62330469-62330488 None:intergenic 35.0%
CAAACCACCTTTCAGAAAAT+GGG - chr1_4:62330468-62330487 Msa0176100:three_prime_UTR 35.0%
GTGATATGAGTATGAAGTGT+TGG - chr1_4:62330562-62330581 Msa0176100:three_prime_UTR 35.0%
CGAAACCAGAAGAGAAAAAA+CGG + chr1_4:62330623-62330642 None:intergenic 35.0%
TAGCAATGGATCCAAAGAAA+AGG + chr1_4:62330665-62330684 None:intergenic 35.0%
GAAAGAGATTCATGAACAGA+AGG + chr1_4:62330714-62330733 None:intergenic 35.0%
TGTCATCATGACAACCAAAA+GGG + chr1_4:62330737-62330756 None:intergenic 35.0%
TTGTCATCATGACAACCAAA+AGG + chr1_4:62330738-62330757 None:intergenic 35.0%
!! TGTGTTGTGAATTTTGGTGT+TGG - chr1_4:62330990-62331009 Msa0176100:CDS 35.0%
!!! GTGTTGTGAATTTTGGTGTT+GGG - chr1_4:62330991-62331010 Msa0176100:CDS 35.0%
TTGTTACATGGAAGTGATGA+TGG - chr1_4:62331109-62331128 Msa0176100:CDS 35.0%
AAAGCACACCAGATATACAA+AGG + chr1_4:62331304-62331323 None:intergenic 35.0%
TTTGTATATCTGGTGTGCTT+TGG - chr1_4:62331303-62331322 Msa0176100:CDS 35.0%
! TTGTTCCTTGTGTACCTTTT+TGG - chr1_4:62331354-62331373 Msa0176100:CDS 35.0%
TTCATTGCCAAGTCAATGTT+TGG - chr1_4:62331419-62331438 Msa0176100:CDS 35.0%
! GTTGTATCCAAACATTGACT+TGG + chr1_4:62331429-62331448 None:intergenic 35.0%
TCAATTAATTGAGGGATTGG+TGG + chr1_4:62331451-62331470 None:intergenic 35.0%
GCTTCAATTAATTGAGGGAT+TGG + chr1_4:62331454-62331473 None:intergenic 35.0%
TTACAACACAAACAACCAAG+TGG + chr1_4:62331921-62331940 None:intergenic 35.0%
! CAGTCTGATTTTTCTTCCTT+TGG - chr1_4:62332066-62332085 Msa0176100:CDS 35.0%
AACAAAATAGGATGGTCCAA+AGG + chr1_4:62332085-62332104 None:intergenic 35.0%
AAGGCGAATCAGTATTCATA+AGG - chr1_4:62332164-62332183 Msa0176100:CDS 35.0%
GGATTAACAGTTATGTACAG+TGG - chr1_4:62332217-62332236 Msa0176100:CDS 35.0%
AGGATCTGTATTGGAGAATA+AGG - chr1_4:62332255-62332274 Msa0176100:CDS 35.0%
AAGAATTCAATCACCATGCA+AGG - chr1_4:62332735-62332754 Msa0176100:intron 35.0%
! AGTTTCAAAGAGTACGGATA+AGG - chr1_4:62332767-62332786 Msa0176100:intron 35.0%
! GTTTCAAAGAGTACGGATAA+GGG - chr1_4:62332768-62332787 Msa0176100:intron 35.0%
! TTTTTCACGGAAACAATACC+TGG + chr1_4:62332872-62332891 None:intergenic 35.0%
AGATATATATGATGCCGGAA+GGG - chr1_4:62332960-62332979 Msa0176100:intron 35.0%
! TTTTCCAATTTCCACTGCAA+AGG + chr1_4:62333028-62333047 None:intergenic 35.0%
CCCATCATAGTCAATGATAA+AGG + chr1_4:62333080-62333099 None:intergenic 35.0%
! TTGACTATGATGGGAAGTAT+TGG - chr1_4:62333086-62333105 Msa0176100:intron 35.0%
! TTTTTCTTGTGAGGTTTCCA+TGG + chr1_4:62333193-62333212 None:intergenic 35.0%
GAAGGAAATCTTTACCGTAT+GGG - chr1_4:62333274-62333293 Msa0176100:intron 35.0%
CTTTGTATTCATCAGCTGTA+AGG + chr1_4:62333354-62333373 None:intergenic 35.0%
TGCTATACTCATTGTGCTAT+TGG - chr1_4:62333564-62333583 Msa0176100:intron 35.0%
! GCTATACTCATTGTGCTATT+GGG - chr1_4:62333565-62333584 Msa0176100:intron 35.0%
ATTGTATTGTCCCTCTCAAT+TGG - chr1_4:62333608-62333627 Msa0176100:intron 35.0%
GAATCTAACTTCCTTGTCTT+GGG - chr1_4:62333654-62333673 Msa0176100:intron 35.0%
!! ACTTTTGAAGAGAACGCATT+TGG + chr1_4:62333685-62333704 None:intergenic 35.0%
CGTTCTCTTCAAAAGTAAGA+CGG - chr1_4:62333689-62333708 Msa0176100:intron 35.0%
TAAAGCATAATGCTTGTGCT+AGG - chr1_4:62333758-62333777 Msa0176100:intron 35.0%
ATAATCTTTGTAGCTGGAGT+TGG - chr1_4:62333796-62333815 Msa0176100:intron 35.0%
GAAGAACCTTATCCATTGAA+AGG - chr1_4:62333865-62333884 Msa0176100:intron 35.0%
GAATCTAGATCACTAACTTC+CGG + chr1_4:62334024-62334043 None:intergenic 35.0%
AGTTAGTGATCTAGATTCAG+CGG - chr1_4:62334026-62334045 Msa0176100:intron 35.0%
! ACTGCTCGAGTTTTTATCAA+CGG + chr1_4:62334111-62334130 None:intergenic 35.0%
ACAGAGGAGAAAAATATGCA+CGG - chr1_4:62334259-62334278 Msa0176100:CDS 35.0%
AAATATGCACGGACACATAA+AGG - chr1_4:62334270-62334289 Msa0176100:CDS 35.0%
TGAATCAATAAATGCTGCAC+CGG + chr1_4:62334313-62334332 None:intergenic 35.0%
GACAGTTGATTATGTGAAAC+CGG - chr1_4:62334458-62334477 Msa0176100:intron 35.0%
! ATCGACACTTCAAAGTTTTC+CGG - chr1_4:62334489-62334508 Msa0176100:intron 35.0%
AAGTTTAGCCGATCGAAAAT+GGG - chr1_4:62334590-62334609 Msa0176100:intron 35.0%
AAATTATGCCTCAAAACCCT+TGG - chr1_4:62334854-62334873 Msa0176100:CDS 35.0%
AATTATGCCTCAAAACCCTT+GGG - chr1_4:62334855-62334874 Msa0176100:CDS 35.0%
!! TTGGAAGCATTAGGAATAGA+AGG - chr1_4:62334907-62334926 Msa0176100:CDS 35.0%
AAGCATTAGGAATAGAAGGA+TGG - chr1_4:62334911-62334930 Msa0176100:CDS 35.0%
AGCATTAGGAATAGAAGGAT+GGG - chr1_4:62334912-62334931 Msa0176100:CDS 35.0%
!!! GTTTTTGAGTCTCTCTCTCT+AGG + chr1_4:62330368-62330387 None:intergenic 40.0%
!! CCATTTTCTGAAAGGTGGTT+TGG + chr1_4:62330470-62330489 None:intergenic 40.0%
CCAAACCACCTTTCAGAAAA+TGG - chr1_4:62330467-62330486 Msa0176100:three_prime_UTR 40.0%
! ACCTTTCAGAAAATGGGTTC+CGG - chr1_4:62330474-62330493 Msa0176100:three_prime_UTR 40.0%
!! TGAGTATGAAGTGTTGGTGT+AGG - chr1_4:62330568-62330587 Msa0176100:three_prime_UTR 40.0%
! CATGAATCTCTTTCCCCTTT+TGG - chr1_4:62330720-62330739 Msa0176100:three_prime_UTR 40.0%
GTCATCATGACAACCAAAAG+GGG + chr1_4:62330736-62330755 None:intergenic 40.0%
TGGTTGTCATGATGACAATG+AGG - chr1_4:62330740-62330759 Msa0176100:three_prime_UTR 40.0%
GGTTGTCATGATGACAATGA+GGG - chr1_4:62330741-62330760 Msa0176100:three_prime_UTR 40.0%
ATGATGACAATGAGGGTTCT+TGG - chr1_4:62330748-62330767 Msa0176100:three_prime_UTR 40.0%
AATGAGGGTTCTTGGTCTAT+TGG - chr1_4:62330756-62330775 Msa0176100:three_prime_UTR 40.0%
!!! AATTTTGGTGTTGGGAGTGT+TGG - chr1_4:62330999-62331018 Msa0176100:CDS 40.0%
!!! TATGATTTTGGTTTGAGGGG+TGG - chr1_4:62331077-62331096 Msa0176100:CDS 40.0%
GGGTCAGCAACAAAATTACT+TGG + chr1_4:62331235-62331254 None:intergenic 40.0%
! AGATGAAAGTTTATGGTGGG+TGG - chr1_4:62331580-62331599 Msa0176100:CDS 40.0%
!! GATGAAAGTTTATGGTGGGT+GGG - chr1_4:62331581-62331600 Msa0176100:CDS 40.0%
!! ATGAAAGTTTATGGTGGGTG+GGG - chr1_4:62331582-62331601 Msa0176100:CDS 40.0%
AGTAGCTCTTAGCATCACTA+AGG - chr1_4:62332461-62332480 Msa0176100:CDS 40.0%
TAGCATCACTAAGGCTGAAA+AGG - chr1_4:62332470-62332489 Msa0176100:CDS 40.0%
ATCACCATGCAAGGTGATAT+TGG - chr1_4:62332744-62332763 Msa0176100:intron 40.0%
AACTCCAATATCACCTTGCA+TGG + chr1_4:62332751-62332770 None:intergenic 40.0%
ACTAGGAATTGCCTTGAATG+AGG - chr1_4:62332806-62332825 Msa0176100:intron 40.0%
GAATTGCCTTGAATGAGGAT+TGG - chr1_4:62332811-62332830 Msa0176100:intron 40.0%
AAGATGCCAATCCTCATTCA+AGG + chr1_4:62332820-62332839 None:intergenic 40.0%
TGTATTTGAGCATAATGGCC+AGG - chr1_4:62332851-62332870 Msa0176100:intron 40.0%
CAGATATATATGATGCCGGA+AGG - chr1_4:62332959-62332978 Msa0176100:intron 40.0%
CTTTCCTTTGCAGTGGAAAT+TGG - chr1_4:62333021-62333040 Msa0176100:intron 40.0%
!!! GATGGGAAGTATTGGCTTTT+TGG - chr1_4:62333094-62333113 Msa0176100:intron 40.0%
!!! GAAGTATTGGCTTTTTGGCT+CGG - chr1_4:62333099-62333118 Msa0176100:intron 40.0%
!! GGTTTTGGCACCAAGAAAAA+CGG - chr1_4:62333130-62333149 Msa0176100:intron 40.0%
!! GTTTTGGCACCAAGAAAAAC+GGG - chr1_4:62333131-62333150 Msa0176100:intron 40.0%
CGAAGGAAATCTTTACCGTA+TGG - chr1_4:62333273-62333292 Msa0176100:intron 40.0%
AAATCTTTACCGTATGGGTC+AGG - chr1_4:62333279-62333298 Msa0176100:intron 40.0%
TTTGACTCAACAAAGCCCAA+TGG + chr1_4:62333388-62333407 None:intergenic 40.0%
!! GTTGGATTGGTGTTATGGAT+GGG - chr1_4:62333476-62333495 Msa0176100:intron 40.0%
!! TTGGATTGGTGTTATGGATG+GGG - chr1_4:62333477-62333496 Msa0176100:intron 40.0%
! TCATTCATAACTCTGGGAAG+AGG - chr1_4:62333632-62333651 Msa0176100:intron 40.0%
GGAATCTAACTTCCTTGTCT+TGG - chr1_4:62333653-62333672 Msa0176100:intron 40.0%
! ATTTGGTCTTTCCCAAGACA+AGG + chr1_4:62333668-62333687 None:intergenic 40.0%
TCTTACCTCGGAGAAATGTT+GGG + chr1_4:62333738-62333757 None:intergenic 40.0%
ATCTTACCTCGGAGAAATGT+TGG + chr1_4:62333739-62333758 None:intergenic 40.0%
!! TGCGAGTATTGACCTTTCAA+TGG + chr1_4:62333880-62333899 None:intergenic 40.0%
! CATACATCTTCAAGTTCCAC+AGG + chr1_4:62333936-62333955 None:intergenic 40.0%
! CTGCTCGAGTTTTTATCAAC+GGG + chr1_4:62334110-62334129 None:intergenic 40.0%
!! TTGAGCGAGGTTTTAATGTC+TGG - chr1_4:62334172-62334191 Msa0176100:intron 40.0%
GAGGATAGAATCCAACAATC+CGG + chr1_4:62334212-62334231 None:intergenic 40.0%
GGATTGTTGGATTCTATCCT+CGG - chr1_4:62334211-62334230 Msa0176100:CDS 40.0%
GGCTACAACATGATACTTAC+CGG - chr1_4:62334291-62334310 Msa0176100:intron 40.0%
!! AACTAGCTTTCAAGAGGTAC+TGG - chr1_4:62334334-62334353 Msa0176100:intron 40.0%
!! ACTAGCTTTCAAGAGGTACT+GGG - chr1_4:62334335-62334354 Msa0176100:intron 40.0%
CAAATGCTAGTTCATCGTCA+AGG - chr1_4:62334436-62334455 Msa0176100:intron 40.0%
TTGATTATGTGAAACCGGCT+TGG - chr1_4:62334463-62334482 Msa0176100:intron 40.0%
! TGATTATGTGAAACCGGCTT+GGG - chr1_4:62334464-62334483 Msa0176100:intron 40.0%
GAAGTTTAGCCGATCGAAAA+TGG - chr1_4:62334589-62334608 Msa0176100:intron 40.0%
AGTTTAGCCGATCGAAAATG+GGG - chr1_4:62334591-62334610 Msa0176100:intron 40.0%
ATTATGCCTCAAAACCCTTG+GGG - chr1_4:62334856-62334875 Msa0176100:CDS 40.0%
! GGATGGTTTGTGATGATGTT+GGG - chr1_4:62334878-62334897 Msa0176100:CDS 40.0%
! TGATGATGTTGGGATGCAAT+TGG - chr1_4:62334888-62334907 Msa0176100:CDS 40.0%
! AGTTTCTGAGGAATGTCTTC+AGG + chr1_4:62334968-62334987 None:intergenic 40.0%
!! GGAACCCATTTTCTGAAAGG+TGG + chr1_4:62330475-62330494 None:intergenic 45.0%
! ACCGGAACCCATTTTCTGAA+AGG + chr1_4:62330478-62330497 None:intergenic 45.0%
ATGGGTTCCGGTCAGATTAA+CGG - chr1_4:62330486-62330505 Msa0176100:three_prime_UTR 45.0%
GGCGGTTCTCATACTAACAA+CGG - chr1_4:62330519-62330538 Msa0176100:three_prime_UTR 45.0%
GGTTCTCATACTAACAACGG+TGG - chr1_4:62330522-62330541 Msa0176100:three_prime_UTR 45.0%
TCTCATACTAACAACGGTGG+TGG - chr1_4:62330525-62330544 Msa0176100:three_prime_UTR 45.0%
!! GTATGAAGTGTTGGTGTAGG+TGG - chr1_4:62330571-62330590 Msa0176100:three_prime_UTR 45.0%
! GGATCCATTGCTAGCTTCTA+TGG - chr1_4:62330672-62330691 Msa0176100:three_prime_UTR 45.0%
CCAACCATAGAAGCTAGCAA+TGG + chr1_4:62330679-62330698 None:intergenic 45.0%
! CCATTGCTAGCTTCTATGGT+TGG - chr1_4:62330676-62330695 Msa0176100:three_prime_UTR 45.0%
! TGTATCGAACGATGATAGCG+CGG - chr1_4:62331153-62331172 Msa0176100:CDS 45.0%
!! TGTGCATCTGTTTCTGATGC+TGG - chr1_4:62331205-62331224 Msa0176100:CDS 45.0%
!! TCCTTGTGTACCTTTTTGGC+TGG - chr1_4:62331358-62331377 Msa0176100:CDS 45.0%
!! GAATTTCTGGCCAGCCAAAA+AGG + chr1_4:62331371-62331390 None:intergenic 45.0%
GATGGCGCTAAAACTTCGAA+GGG + chr1_4:62331845-62331864 None:intergenic 45.0%
! TGATGGCGCTAAAACTTCGA+AGG + chr1_4:62331846-62331865 None:intergenic 45.0%
!! GAAGTTTTAGCGCCATCACT+TGG - chr1_4:62331848-62331867 Msa0176100:CDS 45.0%
CAGAGAAACAGTAGACCACT+TGG - chr1_4:62331903-62331922 Msa0176100:CDS 45.0%
ATCAGACTGCAGTGCTCAAT+AGG + chr1_4:62332055-62332074 None:intergenic 45.0%
! TTGAGGTGTCTTGAGTTCCT+AGG - chr1_4:62332618-62332637 Msa0176100:CDS 45.0%
!! ACAGGTAAAGAGTATCTCCC+TGG + chr1_4:62332704-62332723 None:intergenic 45.0%
! TCTCCTCTTTTACTCCCTTC+CGG + chr1_4:62332977-62332996 None:intergenic 45.0%
CATTGCACTTTCCTTTGCAG+TGG - chr1_4:62333014-62333033 Msa0176100:intron 45.0%
!!! CTTTTTGGCTCGGATCATAG+TGG - chr1_4:62333109-62333128 Msa0176100:intron 45.0%
AAAACGGGCAGTTGGAGATT+TGG - chr1_4:62333146-62333165 Msa0176100:intron 45.0%
TGGTACAGCAATTCACCTCT+CGG - chr1_4:62333166-62333185 Msa0176100:intron 45.0%
GGCAGGCCATTTAAATACGA+AGG - chr1_4:62333256-62333275 Msa0176100:intron 45.0%
AGGACTGTGGTGATACGTAT+GGG - chr1_4:62333299-62333318 Msa0176100:intron 45.0%
TAGCACCATTCCACGCATTT+CGG + chr1_4:62333417-62333436 None:intergenic 45.0%
!! TGGTGGTTGGATTGGTGTTA+TGG - chr1_4:62333471-62333490 Msa0176100:intron 45.0%
!! GGTTGGATTGGTGTTATGGA+TGG - chr1_4:62333475-62333494 Msa0176100:intron 45.0%
! TTCCTTCTGGAGACTCAATC+CGG - chr1_4:62333506-62333525 Msa0176100:intron 45.0%
AGCATAATGCTTGTGCTAGG+AGG - chr1_4:62333761-62333780 Msa0176100:intron 45.0%
GCATAATGCTTGTGCTAGGA+GGG - chr1_4:62333762-62333781 Msa0176100:intron 45.0%
! TTCTGTGTCTGAGATCGTTG+TGG - chr1_4:62333978-62333997 Msa0176100:intron 45.0%
ATCGTTGTGGTGTGGAACAA+GGG - chr1_4:62333991-62334010 Msa0176100:intron 45.0%
CTAGATCACTAACTTCCGGA+GGG + chr1_4:62334020-62334039 None:intergenic 45.0%
TCTAGATCACTAACTTCCGG+AGG + chr1_4:62334021-62334040 None:intergenic 45.0%
TGATCTAGATTCAGCGGTAC+CGG - chr1_4:62334032-62334051 Msa0176100:intron 45.0%
TAATGTCGTCATCGAGCTCA+AGG + chr1_4:62334134-62334153 None:intergenic 45.0%
! ACATGTGATGATGTTGAGCG+AGG - chr1_4:62334159-62334178 Msa0176100:intron 45.0%
TAGAATCCAACAATCCGGTC+AGG + chr1_4:62334207-62334226 None:intergenic 45.0%
TTCTATCCTCGGCTTATTGC+CGG - chr1_4:62334222-62334241 Msa0176100:CDS 45.0%
!! TCTGTACTTTAATGGGCTCC+CGG + chr1_4:62334244-62334263 None:intergenic 45.0%
!! CTAGCTTTCAAGAGGTACTG+GGG - chr1_4:62334336-62334355 Msa0176100:intron 45.0%
GATAATGCACCTTCGTGTTG+CGG + chr1_4:62334527-62334546 None:intergenic 45.0%
! GTCGAATCCCCATTTTCGAT+CGG + chr1_4:62334601-62334620 None:intergenic 45.0%
GAAAATGGGGATTCGACAGT+AGG - chr1_4:62334604-62334623 Msa0176100:intron 45.0%
TTATGCCTCAAAACCCTTGG+GGG - chr1_4:62334857-62334876 Msa0176100:CDS 45.0%
! GGGATGGTTTGTGATGATGT+TGG - chr1_4:62334877-62334896 Msa0176100:CDS 45.0%
!! GGGATGCAATTGGAAGCATT+AGG - chr1_4:62334898-62334917 Msa0176100:CDS 45.0%
GGAATAGAAGGATGGGCAAA+TGG - chr1_4:62334919-62334938 Msa0176100:CDS 45.0%
AGAGCCACCGCGTTACAAAT+GGG + chr1_4:62330444-62330463 None:intergenic 50.0%
ACAGATGCACAAGTCACCAC+AGG + chr1_4:62331196-62331215 None:intergenic 50.0%
! GCCAGCCAAAAAGGTACACA+AGG + chr1_4:62331362-62331381 None:intergenic 50.0%
GTACGGATAAGGGAGCAACA+TGG - chr1_4:62332778-62332797 Msa0176100:intron 50.0%
ATGCCGGAAGGGAGTAAAAG+AGG - chr1_4:62332971-62332990 Msa0176100:intron 50.0%
! GGCTCGGATCATAGTGGTTT+TGG - chr1_4:62333115-62333134 Msa0176100:intron 50.0%
CACCAAGAAAAACGGGCAGT+TGG - chr1_4:62333138-62333157 Msa0176100:intron 50.0%
!! CTCCAACTGCCCGTTTTTCT+TGG + chr1_4:62333143-62333162 None:intergenic 50.0%
CAGGACTGTGGTGATACGTA+TGG - chr1_4:62333298-62333317 Msa0176100:intron 50.0%
GTGGTGATACGTATGGGAGA+CGG - chr1_4:62333305-62333324 Msa0176100:intron 50.0%
TGGTGATACGTATGGGAGAC+GGG - chr1_4:62333306-62333325 Msa0176100:intron 50.0%
CAAACAAGAGCCGAAATGCG+TGG - chr1_4:62333404-62333423 Msa0176100:intron 50.0%
AAGAGCCGAAATGCGTGGAA+TGG - chr1_4:62333409-62333428 Msa0176100:intron 50.0%
GACGTTGGGCATCTAAGTGA+TGG + chr1_4:62333444-62333463 None:intergenic 50.0%
ACACCAATCCAACCACCAGA+CGG + chr1_4:62333469-62333488 None:intergenic 50.0%
! GTGCTATTGGGTGTGTTGCT+CGG - chr1_4:62333577-62333596 Msa0176100:intron 50.0%
CTCGGAGAAATGTTGGGACT+CGG + chr1_4:62333732-62333751 None:intergenic 50.0%
GGAGTTGGATTGATGTGCGT+AGG - chr1_4:62333811-62333830 Msa0176100:intron 50.0%
! TGTCTGAGATCGTTGTGGTG+TGG - chr1_4:62333983-62334002 Msa0176100:intron 50.0%
GATCGTTGTGGTGTGGAACA+AGG - chr1_4:62333990-62334009 Msa0176100:intron 50.0%
!! TAGATTCAGCGGTACCGGTA+AGG - chr1_4:62334037-62334056 Msa0176100:intron 50.0%
TCCTCTACCCTGATCCTTAC+CGG + chr1_4:62334054-62334073 None:intergenic 50.0%
CAACATCCTGACCGGATTGT+TGG - chr1_4:62334198-62334217 Msa0176100:CDS 50.0%
TCTATCCTCGGCTTATTGCC+GGG - chr1_4:62334223-62334242 Msa0176100:CDS 50.0%
GGGAGCCCATTAAAGTACAG+AGG - chr1_4:62334243-62334262 Msa0176100:CDS 50.0%
!! TTTCAAGAGGTACTGGGGAG+AGG - chr1_4:62334341-62334360 Msa0176100:intron 50.0%
AGAGGAAGCTAAGCAAGGGA+GGG - chr1_4:62334359-62334378 Msa0176100:intron 50.0%
GGATTCGACAGTAGGAGAGA+TGG - chr1_4:62334612-62334631 Msa0176100:intron 50.0%
TCGACAGTAGGAGAGATGGT+TGG - chr1_4:62334616-62334635 Msa0176100:intron 50.0%
CGACAGTAGGAGAGATGGTT+GGG - chr1_4:62334617-62334636 Msa0176100:intron 50.0%
CATCACAAACCATCCCCCAA+GGG + chr1_4:62334873-62334892 None:intergenic 50.0%
TCATCACAAACCATCCCCCA+AGG + chr1_4:62334874-62334893 None:intergenic 50.0%
CTGGCGACCCATTTGTAACG+CGG - chr1_4:62330434-62330453 Msa0176100:three_prime_UTR 55.0%
CAGAGCCACCGCGTTACAAA+TGG + chr1_4:62330445-62330464 None:intergenic 55.0%
GGTTCCGGTCAGATTAACGG+CGG - chr1_4:62330489-62330508 Msa0176100:three_prime_UTR 55.0%
GTTCCGGTCAGATTAACGGC+GGG - chr1_4:62330490-62330509 Msa0176100:three_prime_UTR 55.0%
TTCCGGTCAGATTAACGGCG+GGG - chr1_4:62330491-62330510 Msa0176100:three_prime_UTR 55.0%
TACCCCGCCGTTAATCTGAC+CGG + chr1_4:62330496-62330515 None:intergenic 55.0%
GTCACCACAGGATTCGCTAC+CGG + chr1_4:62331184-62331203 None:intergenic 55.0%
!! TATGGTGGGTGGGGTTAGTG+AGG - chr1_4:62331591-62331610 Msa0176100:CDS 55.0%
GGAGCAACATGGCAGCAACT+AGG - chr1_4:62332789-62332808 Msa0176100:intron 55.0%
GCAATTCACCTCTCGGTCCA+TGG - chr1_4:62333173-62333192 Msa0176100:intron 55.0%
TGAGGTTTCCATGGACCGAG+AGG + chr1_4:62333184-62333203 None:intergenic 55.0%
AAGAGCTTGGGAGCTCGCAA+TGG - chr1_4:62333232-62333251 Msa0176100:intron 55.0%
TACCGTATGGGTCAGGACTG+TGG - chr1_4:62333286-62333305 Msa0176100:intron 55.0%
CACCACAGTCCTGACCCATA+CGG + chr1_4:62333291-62333310 None:intergenic 55.0%
ACCACCAGACGGAAGACGTT+GGG + chr1_4:62333458-62333477 None:intergenic 55.0%
AACCACCAGACGGAAGACGT+TGG + chr1_4:62333459-62333478 None:intergenic 55.0%
AACGTCTTCCGTCTGGTGGT+TGG - chr1_4:62333458-62333477 Msa0176100:intron 55.0%
CTTCCGTCTGGTGGTTGGAT+TGG - chr1_4:62333463-62333482 Msa0176100:intron 55.0%
GATGGGGATCGTGTTCCTTC+TGG - chr1_4:62333493-62333512 Msa0176100:intron 55.0%
! CTTCTGGAGACTCAATCCGG+CGG - chr1_4:62333509-62333528 Msa0176100:intron 55.0%
AGACTCAATCCGGCGGTTCA+TGG - chr1_4:62333516-62333535 Msa0176100:intron 55.0%
TCAATCCGGCGGTTCATGGT+TGG - chr1_4:62333520-62333539 Msa0176100:intron 55.0%
CACAACCAACCATGAACCGC+CGG + chr1_4:62333528-62333547 None:intergenic 55.0%
! ATGTTGGGACTCGGTTCACG+CGG + chr1_4:62333723-62333742 None:intergenic 55.0%
CGAGTCCCAACATTTCTCCG+AGG - chr1_4:62333730-62333749 Msa0176100:intron 55.0%
GTGGAACAAGGGAATCCCTC+CGG - chr1_4:62334002-62334021 Msa0176100:intron 55.0%
!! AGCGGTACCGGTAAGGATCA+GGG - chr1_4:62334044-62334063 Msa0176100:intron 55.0%
ACCGGTAAGGATCAGGGTAG+AGG - chr1_4:62334050-62334069 Msa0176100:intron 55.0%
TCTGGCGTCAACATCCTGAC+CGG - chr1_4:62334190-62334209 Msa0176100:CDS 55.0%
TGGGGAGAGGAAGCTAAGCA+AGG - chr1_4:62334354-62334373 Msa0176100:intron 55.0%
GGGGAGAGGAAGCTAAGCAA+GGG - chr1_4:62334355-62334374 Msa0176100:intron 55.0%
GAGAGGAAGCTAAGCAAGGG+AGG - chr1_4:62334358-62334377 Msa0176100:intron 55.0%
AGCTAAGCAAGGGAGGGAAG+TGG - chr1_4:62334365-62334384 Msa0176100:intron 55.0%
TAAGCAAGGGAGGGAAGTGG+TGG - chr1_4:62334368-62334387 Msa0176100:intron 55.0%
!! GAAGTGTCGATAGCCCAAGC+CGG + chr1_4:62334480-62334499 None:intergenic 55.0%
! AGCGATTAGCCGCAACACGA+AGG - chr1_4:62334515-62334534 Msa0176100:intron 55.0%
! ACCATCCCCCAAGGGTTTTG+AGG + chr1_4:62334865-62334884 None:intergenic 55.0%
GCGACCCATTTGTAACGCGG+TGG - chr1_4:62330437-62330456 Msa0176100:three_prime_UTR 60.0%
GGTCAGATTAACGGCGGGGT+AGG - chr1_4:62330495-62330514 Msa0176100:three_prime_UTR 60.0%
CAGATTAACGGCGGGGTAGG+CGG - chr1_4:62330498-62330517 Msa0176100:three_prime_UTR 60.0%
! CGAACGATGATAGCGCGGCT+TGG - chr1_4:62331158-62331177 Msa0176100:CDS 60.0%
TTGGCCGGTAGCGAATCCTG+TGG - chr1_4:62331177-62331196 Msa0176100:CDS 60.0%
AGCTTGGGAGCTCGCAATGG+AGG - chr1_4:62333235-62333254 Msa0176100:intron 60.0%
GATGCCCAACGTCTTCCGTC+TGG - chr1_4:62333451-62333470 Msa0176100:intron 60.0%
CGCCGGATTGAGTCTCCAGA+AGG + chr1_4:62333511-62333530 None:intergenic 60.0%
! TGTTGGGACTCGGTTCACGC+GGG + chr1_4:62333722-62333741 None:intergenic 60.0%
TGACCTACGATGCTCGCCTG+TGG - chr1_4:62333917-62333936 Msa0176100:intron 60.0%
! GTTCCACAGGCGAGCATCGT+AGG + chr1_4:62333923-62333942 None:intergenic 60.0%
!! CAGCGGTACCGGTAAGGATC+AGG - chr1_4:62334043-62334062 Msa0176100:intron 60.0%
GTTGCGGCTAATCGCTGCAC+CGG + chr1_4:62334511-62334530 None:intergenic 60.0%
GCCTCAAAACCCTTGGGGGA+TGG - chr1_4:62334861-62334880 Msa0176100:CDS 60.0%
ATTAACGGCGGGGTAGGCGG+CGG - chr1_4:62330501-62330520 Msa0176100:three_prime_UTR 65.0%
! CGATGATAGCGCGGCTTGGC+CGG - chr1_4:62331162-62331181 Msa0176100:CDS 65.0%
TGGGAGCTCGCAATGGAGGC+AGG - chr1_4:62333239-62333258 Msa0176100:intron 65.0%
GCCCAACGTCTTCCGTCTGG+TGG - chr1_4:62333454-62333473 Msa0176100:intron 65.0%
GGGCTCCCGGCAATAAGCCG+AGG + chr1_4:62334231-62334250 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 62330315 62335138 62330315 ID=Msa0176100;Name=Msa0176100
chr1_4 mRNA 62330315 62335138 62330315 ID=Msa0176100-mRNA-1;Parent=Msa0176100;Name=Msa0176100-mRNA-1;_AED=0.01;_eAED=0.01;_QI=171|1|1|1|1|1|4|491|771
chr1_4 exon 62330315 62332491 62330315 ID=Msa0176100-mRNA-1:exon:20049;Parent=Msa0176100-mRNA-1
chr1_4 exon 62332581 62332748 62332581 ID=Msa0176100-mRNA-1:exon:20048;Parent=Msa0176100-mRNA-1
chr1_4 exon 62334183 62334305 62334183 ID=Msa0176100-mRNA-1:exon:20047;Parent=Msa0176100-mRNA-1
chr1_4 exon 62334629 62335138 62334629 ID=Msa0176100-mRNA-1:exon:20046;Parent=Msa0176100-mRNA-1
chr1_4 five_prime_UTR 62334968 62335138 62334968 ID=Msa0176100-mRNA-1:five_prime_utr;Parent=Msa0176100-mRNA-1
chr1_4 CDS 62334629 62334967 62334629 ID=Msa0176100-mRNA-1:cds;Parent=Msa0176100-mRNA-1
chr1_4 CDS 62334183 62334305 62334183 ID=Msa0176100-mRNA-1:cds;Parent=Msa0176100-mRNA-1
chr1_4 CDS 62332581 62332748 62332581 ID=Msa0176100-mRNA-1:cds;Parent=Msa0176100-mRNA-1
chr1_4 CDS 62330806 62332491 62330806 ID=Msa0176100-mRNA-1:cds;Parent=Msa0176100-mRNA-1
chr1_4 three_prime_UTR 62330315 62330805 62330315 ID=Msa0176100-mRNA-1:three_prime_utr;Parent=Msa0176100-mRNA-1
Gene Sequence

>Msa0176100

ATGGGTTCCGGTCAGATTAACGGCGGGGTAGGCGGCGGTTCTCATACTAACAACGGTGGTGGTAGTAACAGTTGTTGTGATATGAGTATGAAGTGTTGGTGTAGGTGGAGATTAGAAAATCAACACTACTATAACCGTTTTTTCTCTTCTGGTTTCGTTTTCTTCTTTGCTTGTTTCCTTTTCTTTGGATCCATTGCTAGCTTCTATGGTTGGCTTTCTTTTTCTCCTTCTGTTCATGAATCTCTTTCCCCTTTTGGTTGTCATGATGACAATGAGGGTTCTTGGTCTATTGGAATTTTCTATGGTGATTCTCCTTTTTCTCTTAAACCCATTGAATTTTCGAATGTATCGAACGATGATAGCGCGGCTTGGCCGGTAGCGAATCCTGTGGTGACTTGTGCATCTGTTTCTGATGCTGGTTTTCCAAGTAATTTTGTTGCTGACCCTTTTCTTTTTATTCAGGGAGATACTCTTTACCTGTTCTATGAGACAAAGAATTCAATCACCATGCAAGGTGATATTGGAGTTTCAAAGAGTACGGATAAGGGAGCAACATGGCAGCAACTAGGAATTGCCTTGAATGAGGATTGGCATCTTTCTTATCCTTATGTATTTGAGCATAATGGCCAGATATATATGATGCCGGAAGGGAGTAAAAGAGGAGATCTTCGTCTGTACAGAGCATTGCACTTTCCTTTGCAGTGGAAATTGGAAAAAGTTCTCATAGAAAAGCCCCTTATTGATTCCTTTATCATTGACTATGATGGGAAGTATTGGCTTTTTGGCTCGGATCATAGTGGTTTTGGCACCAAGAAAAACGGGCAGTTGGAGATTTGGTACAGCAATTCACCTCTCGGTCCATGGAAACCTCACAAGAAAAACCCTATTTATAACATTGACAAGAGCTTGGGAGCTCGCAATGGAGGCAGGCCATTTAAATACGAAGGAAATCTTTACCGTATGGGTCAGGACTGTGGTGATACGTATGGGAGACGGGTGCGTGCTTTTCAGATAGAAACCCTTACAGCTGATGAATACAAAGAAATTGAAGTACCATTGGGCTTTGTTGAGTCAAACAAGAGCCGAAATGCGTGGAATGGTGCTAGATACCATCACTTAGATGCCCAACGTCTTCCGTCTGGTGGTTGGATTGGTGTTATGGATGGGGATCGTGTTCCTTCTGGAGACTCAATCCGGCGGTTCATGGTTGGTTGTGCTTCTGTTGCAGTCGCTGCTATACTCATTGTGCTATTGGGTGTGTTGCTCGGTTTTGTGAATTGTATTGTCCCTCTCAATTGGTTCATTCATAACTCTGGGAAGAGGAATCTAACTTCCTTGTCTTGGGAAAGACCAAATGCGTTCTCTTCAAAAGTAAGACGGTTCTGCACCCGCGTGAACCGAGTCCCAACATTTCTCCGAGGTAAGATAAAGCATAATGCTTGTGCTAGGAGGGTTATTCTTACTATAATCTTTGTAGCTGGAGTTGGATTGATGTGCGTAGGATTTAAAAATATTTATGGTGGTAATGGTTCAGAAGAACCTTATCCATTGAAAGGTCAATACTCGCAGTTCACGTTATTGACAATGACCTACGATGCTCGCCTGTGGAACTTGAAGATGTATGTGAAACATTACTCGAGATGCTCTTCTGTGTCTGAGATCGTTGTGGTGTGGAACAAGGGAATCCCTCCGGAAGTTAGTGATCTAGATTCAGCGGTACCGGTAAGGATCAGGGTAGAGGAGAAAAACTCTCTAAATAATCGATTCAAGGAAGACCCGTTGATAAAAACTCGAGCAGTCCTTGAGCTCGATGACGACATTATGATGACATGTGATGATGTTGAGCGAGGTTTTAATGTCTGGCGTCAACATCCTGACCGGATTGTTGGATTCTATCCTCGGCTTATTGCCGGGAGCCCATTAAAGTACAGAGGAGAAAAATATGCACGGACACATAAAGGCTACAACATGATACTTACCGGTGCAGCATTTATTGATTCAAAACTAGCTTTCAAGAGGTACTGGGGAGAGGAAGCTAAGCAAGGGAGGGAAGTGGTGGACAAGTTATTTAACTGTGAAGATGTGCTTTTGAATTACTTGTATGCAAATGCTAGTTCATCGTCAAGGACAGTTGATTATGTGAAACCGGCTTGGGCTATCGACACTTCAAAGTTTTCCGGTGCAGCGATTAGCCGCAACACGAAGGTGCATTATCAATTGAGAAGCAATTGTCTAATGAAATTTTCGGAGATGTATGGAAGTTTAGCCGATCGAAAATGGGGATTCGACAGTAGGAGAGATGGTTGGGATGTATAG
Protein sequence

>Msa0176100

MGSGQINGGVGGGSHTNNGGGSNSCCDMSMKCWCRWRLENQHYYNRFFSSGFVFFFACFLFFGSIASFYGWLSFSPSVHESLSPFGCHDDNEGSWSIGIFYGDSPFSLKPIEFSNVSNDDSAAWPVANPVVTCASVSDAGFPSNFVADPFLFIQGDTLYLFYETKNSITMQGDIGVSKSTDKGATWQQLGIALNEDWHLSYPYVFEHNGQIYMMPEGSKRGDLRLYRALHFPLQWKLEKVLIEKPLIDSFIIDYDGKYWLFGSDHSGFGTKKNGQLEIWYSNSPLGPWKPHKKNPIYNIDKSLGARNGGRPFKYEGNLYRMGQDCGDTYGRRVRAFQIETLTADEYKEIEVPLGFVESNKSRNAWNGARYHHLDAQRLPSGGWIGVMDGDRVPSGDSIRRFMVGCASVAVAAILIVLLGVLLGFVNCIVPLNWFIHNSGKRNLTSLSWERPNAFSSKVRRFCTRVNRVPTFLRGKIKHNACARRVILTIIFVAGVGLMCVGFKNIYGGNGSEEPYPLKGQYSQFTLLTMTYDARLWNLKMYVKHYSRCSSVSEIVVVWNKGIPPEVSDLDSAVPVRIRVEEKNSLNNRFKEDPLIKTRAVLELDDDIMMTCDDVERGFNVWRQHPDRIVGFYPRLIAGSPLKYRGEKYARTHKGYNMILTGAAFIDSKLAFKRYWGEEAKQGREVVDKLFNCEDVLLNYLYANASSSSRTVDYVKPAWAIDTSKFSGAAISRNTKVHYQLRSNCLMKFSEMYGSLADRKWGFDSRRDGWDV*