AlfalfaGEDB | Msa0083670

M. sativa cultivar zhongmu-4 / Msa0083670

KEGG: -
GO: GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005975 GO:0005976 GO:0006022 GO:0006023 GO:0006024 GO:0006029 GO:0006040 GO:0006044 GO:0006082 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008101 GO:0008150 GO:0008152 GO:0008194 GO:0008375 GO:0008589 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0012505 GO:0015012 GO:0015014 GO:0015020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0030111 GO:0030166 GO:0030177 GO:0030201 GO:0030202 GO:0030203 GO:0030204 GO:0030206 GO:0030210 GO:0033692 GO:0034637 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045880 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050508 GO:0050509 GO:0050650 GO:0050654 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060828 GO:0065007 GO:0071704 GO:0090092 GO:0090097 GO:0090098 GO:0090100 GO:0090263 GO:1901071 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903510
PFAM: PF04616.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0083670	XP_013469331.1	98.314	771	13	0	1	771	1	771	0.0	1575

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0083670	sp\|Q84WB7\|GINT1_ARATH	61.425	744	275	5	39	771	23	765	0.0	972

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0083670	A0A072VN21	98.314	771	13	0	1	771	1	771	0.0	1575

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0035530	Msa0083670	0.950008	3.984798e-108	-8.615850e-47
Msa0035610	Msa0083670	0.951047	4.639238e-109	-8.615850e-47
Msa0083670	Msa0176100	0.994409	5.098172e-207	-8.615850e-47
Msa0083670	Msa0179100	0.801530	8.622506e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0083670	MtrunA17_Chr1g0197731	98.314	771	13	0	1	771	1	771	0.0	1575
Msa0083670	MtrunA17_Chr5g0436731	33.193	238	131	6	538	755	85	314	1.49e-28	117
Msa0083670	MtrunA17_Chr1g0147601	28.244	262	164	11	516	758	66	322	2.54e-14	75.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0083670	AT5G04500.1	61.425	744	275	5	39	771	23	765	0.0	972
Msa0083670	AT3G55830.1	31.298	262	145	7	517	755	67	316	1.15e-25	109
Msa0083670	AT1G80290.1	27.374	179	120	3	586	755	121	298	5.02e-13	71.6
Msa0083670	AT1G80290.2	27.374	179	120	3	586	755	129	306	5.50e-13	71.6

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Find 238 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGGGCAGTTGGAGATT+TGG	0.333853	1_2:-62788912	Msa0083670:CDS
AAACTGTAATTCTGATTCTG+GGG	0.627313	1_2:-62787075	Msa0083670:three_prime_UTR
AAAGAAATTGAAGTACCATT+GGG	0.480045	1_2:-62788688	Msa0083670:CDS
AAATATGCACGGACACATAA+AGG	0.414287	1_2:-62787788	Msa0083670:CDS
AAATCTTTACCGTATGGGTC+AGG	0.496835	1_2:-62788779	Msa0083670:CDS
AAATTATGCCTCAAAACCCT+TGG	0.489743	1_2:-62787204	Msa0083670:three_prime_UTR
AACCACCAGACGGAAGACGT+TGG	0.631744	1_2:+62788602	None:intergenic
AACGTCTTCCGTCTGGTGGT+TGG	0.445900	1_2:-62788600	Msa0083670:CDS
AACTAGCTTTCAAGAGGTAC+TGG	0.384132	1_2:-62787724	Msa0083670:CDS
AACTCCAATATCACCTTGCA+TGG	0.573916	1_2:+62789310	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTGATATGAGAATGTTACA+TGG	-	chr1_2:62788098-62788117	Msa0083670:CDS	30.0%
AATGAGATGAAAGTTTATGG+TGG	-	chr1_2:62788201-62788220	Msa0083670:CDS	30.0%
ATGAGATGAAAGTTTATGGT+GGG	-	chr1_2:62788202-62788221	Msa0083670:CDS	30.0%
GTTATTTATCAACCAAGTGA+TGG	+	chr1_2:62788488-62788507	None:intergenic	30.0%
CTTTCTCAAACAAAATAGGA+TGG	+	chr1_2:62788718-62788737	None:intergenic	30.0%
AGAAAACAATGAAGCAAAAG+AGG	+	chr1_2:62789013-62789032	None:intergenic	30.0%
ACATGAACATGAACATCTAT+AGG	+	chr1_2:62789138-62789157	None:intergenic	30.0%
ACTCGTTAATCACATTATTG+AGG	-	chr1_2:62789226-62789245	Msa0083670:CDS	30.0%
TAATGTCAATATGAGTGAAC+AGG	+	chr1_2:62789302-62789321	None:intergenic	30.0%
TCATATTGACATTACAATCC+AGG	-	chr1_2:62789308-62789327	Msa0083670:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	62786942	62791763	62786942	ID=Msa0083670;Name=Msa0083670
chr1_2	mRNA	62786942	62791763	62786942	ID=Msa0083670-mRNA-1;Parent=Msa0083670;Name=Msa0083670-mRNA-1;_AED=0.01;_eAED=0.01;_QI=169\|1\|1\|1\|1\|1\|4\|491\|771
chr1_2	exon	62786942	62789118	62786942	ID=Msa0083670-mRNA-1:exon:20991;Parent=Msa0083670-mRNA-1
chr1_2	exon	62789208	62789375	62789208	ID=Msa0083670-mRNA-1:exon:20990;Parent=Msa0083670-mRNA-1
chr1_2	exon	62790810	62790932	62790810	ID=Msa0083670-mRNA-1:exon:20989;Parent=Msa0083670-mRNA-1
chr1_2	exon	62791256	62791763	62791256	ID=Msa0083670-mRNA-1:exon:20988;Parent=Msa0083670-mRNA-1
chr1_2	five_prime_UTR	62791595	62791763	62791595	ID=Msa0083670-mRNA-1:five_prime_utr;Parent=Msa0083670-mRNA-1
chr1_2	CDS	62791256	62791594	62791256	ID=Msa0083670-mRNA-1:cds;Parent=Msa0083670-mRNA-1
chr1_2	CDS	62790810	62790932	62790810	ID=Msa0083670-mRNA-1:cds;Parent=Msa0083670-mRNA-1
chr1_2	CDS	62789208	62789375	62789208	ID=Msa0083670-mRNA-1:cds;Parent=Msa0083670-mRNA-1
chr1_2	CDS	62787433	62789118	62787433	ID=Msa0083670-mRNA-1:cds;Parent=Msa0083670-mRNA-1
chr1_2	three_prime_UTR	62786942	62787432	62786942	ID=Msa0083670-mRNA-1:three_prime_utr;Parent=Msa0083670-mRNA-1

Gene Sequence

>Msa0083670

ATGGGTTCCGGTCAGATTAACGGCGGTGTAGGCGGCGGTTCTCATACCAACAACGGTGGTGGTAGTAACAGTTGTTGTGATATGAGTATGAAGTGTTGGTGTTGGTGGAGATTAGAAAATCAACACTACTATAACCGTTTTTTCTCTTCTGGTTTCGTTTTCTTCTTTGCTTGTTTCCTTTTCTTTGGATCCATTGCTAGCTTCTATGGTTGGCTTTCTTTTTCTCCTTCTGTTCATGAATCTCTTTCCCCTTTTGGTTGTCATGATGACAATGAGGGTTCTTGGTCTATTGGAATTTTCTATGGTGATTCTCCTTTTTCTCTTAAACCCATTGAATTTTCGAATGTATCGAACGATGATAGCGCGGCTTGGCCGGTAGCGAATCCTGTGGTGACTTGTGCATCTGTTTCTGATGCTGGTTTTCCAAGTAATTTTGTTGCTGACCCTTTTCTTTTTATTCAGGGAGATACTCTTTACCTGTTCTATGAGACAAAGAATTCAATCACCATGCAAGGTGATATTGGAGTTTCAAAGAGTACGGATAAGGGAGCAACATGGCAGCAACTAGGAATTGCCTTGAATGAGGATTGGCATCTTTCTTATCCTTATGTATTTGAGCATAATGGCCAGATATATATGATGCCGGAAGGGAGTAAAAGAGGAGATCTTCGTCTGTACAGAGCATTGCACTTTCCTTTGCAGTGGAAATTGGAAAAAGTTCTCATAGAAAAGCCCCTTATTGATTCCTTTATCATTGACTATGATGGGAAGTATTGGCTTTTTGGCTCGGATCATAGTGGTTTTGGCACCAAGAAAAACGGGCAGTTGGAGATTTGGTACAGCAATTCACCTCTCGGTCCATGGAAACCTCACAAGAAAAACCCTATTTATAACATTGACAAGAGCTTGGGAGCTCGCAATGGAGGCAGGCCATTTAAATACGAAGGAAATCTTTACCGTATGGGTCAGGACTGTGGTGATACGTATGGGAGACGGGTGCGTGCTTTTCAGATAGAAACCCTTACAGCTGATGAATACAAAGAAATTGAAGTACCATTGGGCTTTGTTGAGTCAAACAAGAGCCGAAATGCGTGGAATGGTGCTAGATACCATCACTTAGATGCCCAACGTCTTCCGTCTGGTGGTTGGATTGGTGTTATGGATGGGGATCGTGTTCCTTCTGGAGACTCAATCCGGCGGTTCATGGTTGGTTGTGCTTCTGTTGCAGTCGCTGCTATACTCATTGTGCTATTGGGTGTGTTGCTCGGTTTTGTGAATTGTATTGTCCCTCTCAATTGGTTCATTCATAACTCTGGGAAGAGGAATCTAACTTCCTTGTCTTGGGAAAGACCAAATGCGTTCTCTTCAAAAGTAAGACGGTTCTGCACCCGCGTGAACCGAGTCCCAACATTTCTCCGAGGTAAGATAAAGCATAATGCTTGTGCTAGGAGGGTTATTCTTACTATAATCTTTGTAGCTGGAGTTGGATTGATGTGCGTAGGATTTAAAAATATTTATGGTGGTAATGGTTCAGAAGAACCTTATCCATTGAAAGGTCAATACTCGCAGTTCACGTTATTGACAATGACCTACGATGCTCGCCTGTGGAACTTGAAGATGTATGTGAAACATTACTCGAGATGCTCTTCTGTGTCTGAGATCGTTGTGGTGTGGAACAAGGGAATCCCTCCGGAAGTTAGTGATCTAGATTCAGCGGTACCGGTAAGGATCAGGGTAGAGGAGAAAAACTCTCTAAATAATCGATTCAAGGAAGACCCGTTGATAAAAACTCGAGCAGTCCTTGAGCTCGATGACGACATTATGATGACATGTGATGATGTTGAGCGAGGTTTTAATGTCTGGCGTCAACATCCTGACCGGATTGTTGGATTCTATCCTCGGCTTATTGCCGGGAGCCCATTAAAGTACAGAGGAGAAAAATATGCACGGACACATAAAGGCTACAACATGATACTTACCGGTGCAGCATTTATTGATTCAAAACTAGCTTTCAAGAGGTACTGGGGAGAGGAAGCTAAGCAAGGGAGGGAAGTGGTGGACAAGTTATTTAACTGTGAAGATGTGCTTTTGAATTACTTGTATGCAAATGCTAGTTCATCGTCAAGGACAGTTGATTATGTGAAACCGGCTTGGGCTATCGACACTTCAAAGTTTTCCGGTGCAGCGATTAGCCGCAACACGAAGGTGCATTATCAATTGAGAAGCAATTGTCTAATGAAATTTTCGGAGATGTATGGAAGTTTAGCCGATCGAAAATGGGGATTCGACAGTAGGAGAGATGGTTGGGATGTATAG

Protein sequence

>Msa0083670

MGSGQINGGVGGGSHTNNGGGSNSCCDMSMKCWCWWRLENQHYYNRFFSSGFVFFFACFLFFGSIASFYGWLSFSPSVHESLSPFGCHDDNEGSWSIGIFYGDSPFSLKPIEFSNVSNDDSAAWPVANPVVTCASVSDAGFPSNFVADPFLFIQGDTLYLFYETKNSITMQGDIGVSKSTDKGATWQQLGIALNEDWHLSYPYVFEHNGQIYMMPEGSKRGDLRLYRALHFPLQWKLEKVLIEKPLIDSFIIDYDGKYWLFGSDHSGFGTKKNGQLEIWYSNSPLGPWKPHKKNPIYNIDKSLGARNGGRPFKYEGNLYRMGQDCGDTYGRRVRAFQIETLTADEYKEIEVPLGFVESNKSRNAWNGARYHHLDAQRLPSGGWIGVMDGDRVPSGDSIRRFMVGCASVAVAAILIVLLGVLLGFVNCIVPLNWFIHNSGKRNLTSLSWERPNAFSSKVRRFCTRVNRVPTFLRGKIKHNACARRVILTIIFVAGVGLMCVGFKNIYGGNGSEEPYPLKGQYSQFTLLTMTYDARLWNLKMYVKHYSRCSSVSEIVVVWNKGIPPEVSDLDSAVPVRIRVEEKNSLNNRFKEDPLIKTRAVLELDDDIMMTCDDVERGFNVWRQHPDRIVGFYPRLIAGSPLKYRGEKYARTHKGYNMILTGAAFIDSKLAFKRYWGEEAKQGREVVDKLFNCEDVLLNYLYANASSSSRTVDYVKPAWAIDTSKFSGAAISRNTKVHYQLRSNCLMKFSEMYGSLADRKWGFDSRRDGWDV*