AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0083670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0083670 MtrunA17_Chr1g0197731 98.314 771 13 0 1 771 1 771 0.0 1575
Msa0083670 MtrunA17_Chr5g0436731 33.193 238 131 6 538 755 85 314 1.49e-28 117
Msa0083670 MtrunA17_Chr1g0147601 28.244 262 164 11 516 758 66 322 2.54e-14 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0083670 AT5G04500.1 61.425 744 275 5 39 771 23 765 0.0 972
Msa0083670 AT3G55830.1 31.298 262 145 7 517 755 67 316 1.15e-25 109
Msa0083670 AT1G80290.1 27.374 179 120 3 586 755 121 298 5.02e-13 71.6
Msa0083670 AT1G80290.2 27.374 179 120 3 586 755 129 306 5.50e-13 71.6

Find 238 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGAATCTCTTTCCCCTTT+TGG 0.113758 1_2:-62791338 Msa0083670:CDS
CTTTCCTTTGCAGTGGAAAT+TGG 0.156359 1_2:-62789037 Msa0083670:CDS
AGTAAGTTGAATACAAATTT+TGG 0.174225 1_2:-62786949 Msa0083670:three_prime_UTR
ACAAACCACCTTTCACAAAA+TGG 0.177905 1_2:-62791591 Msa0083670:exon
GGATCCATTGCTAGCTTCTA+TGG 0.216390 1_2:-62791386 Msa0083670:CDS
TGGTATTGTAAAAGTTATTT+TGG 0.227517 1_2:-62786977 Msa0083670:three_prime_UTR
TCAATGGGTTTAAGAGAAAA+AGG 0.241800 1_2:+62791260 None:intergenic
TTTCTCCTCTGTACTTTAAT+GGG 0.244050 1_2:+62787810 None:intergenic
TGCTATACTCATTGTGCTAT+TGG 0.258919 1_2:-62788494 Msa0083670:CDS
GGCTCGGATCATAGTGGTTT+TGG 0.264045 1_2:-62788943 Msa0083670:CDS
CTCTTGTCAATGTTATAAAT+AGG 0.265701 1_2:+62788844 None:intergenic
ATGTCTGCAACATGTAAATT+TGG 0.266776 1_2:-62787261 Msa0083670:three_prime_UTR
GAAGTTTAGCCGATCGAAAA+TGG 0.272899 1_2:-62787469 Msa0083670:CDS
AGATTTCCTTCGTATTTAAA+TGG 0.276458 1_2:+62788796 None:intergenic
GATGGGGATCGTGTTCCTTC+TGG 0.287009 1_2:-62788565 Msa0083670:CDS
TTCTATCCTCGGCTTATTGC+CGG 0.292050 1_2:-62787836 Msa0083670:CDS
CCTTATGTATTTGAGCATAA+TGG 0.305640 1_2:-62789212 Msa0083670:CDS
TCTTGTCAATGTTATAAATA+GGG 0.323269 1_2:+62788845 None:intergenic
TCCTCTACCCTGATCCTTAC+CGG 0.325557 1_2:+62788007 None:intergenic
AGAAACTGTAATTCTGATTC+TGG 0.331959 1_2:-62787077 Msa0083670:three_prime_UTR
AAAACGGGCAGTTGGAGATT+TGG 0.333853 1_2:-62788912 Msa0083670:CDS
ATCACCATGCAAGGTGATAT+TGG 0.334120 1_2:-62789314 Msa0083670:CDS
AATGAGGGTTCTTGGTCTAT+TGG 0.334831 1_2:-62791302 Msa0083670:CDS
ATGTAAATTTGGTTCTATAA+TGG 0.341661 1_2:-62787250 Msa0083670:three_prime_UTR
TGGTGGTTGGATTGGTGTTA+TGG 0.341798 1_2:-62788587 Msa0083670:CDS
TGTGCATCTGTTTCTGATGC+TGG 0.345247 1_2:-62790853 Msa0083670:CDS
TCCTTTATCATTGACTATGA+TGG 0.346859 1_2:-62788982 Msa0083670:CDS
CAATGATAAAGGAATCAATA+AGG 0.348404 1_2:+62788992 None:intergenic
GGATGGTTTGTGATGATGTT+GGG 0.363890 1_2:-62787180 Msa0083670:three_prime_UTR
TGGGATGTATAGTATTAGTA+TGG 0.375704 1_2:-62787422 Msa0083670:exon
TAGCACCATTCCACGCATTT+CGG 0.380197 1_2:+62788644 None:intergenic
AACTAGCTTTCAAGAGGTAC+TGG 0.384132 1_2:-62787724 Msa0083670:CDS
CCCATCATAGTCAATGATAA+AGG 0.384298 1_2:+62788981 None:intergenic
TATTGACCTTTCAATGGATA+AGG 0.384534 1_2:+62788187 None:intergenic
CTTTGTATTCATCAGCTGTA+AGG 0.385106 1_2:+62788707 None:intergenic
CAGAGCCACCGCGTTACAAA+TGG 0.391018 1_2:+62791616 None:intergenic
GGAATCTAACTTCCTTGTCT+TGG 0.391386 1_2:-62788405 Msa0083670:CDS
CAGCGGTACCGGTAAGGATC+AGG 0.393458 1_2:-62788015 Msa0083670:CDS
GGGATGGTTTGTGATGATGT+TGG 0.393606 1_2:-62787181 Msa0083670:three_prime_UTR
GCTATACTCATTGTGCTATT+GGG 0.394366 1_2:-62788493 Msa0083670:CDS
ATTGTATTGTCCCTCTCAAT+TGG 0.397061 1_2:-62788450 Msa0083670:CDS
GAAACTGTAATTCTGATTCT+GGG 0.398249 1_2:-62787076 Msa0083670:three_prime_UTR
GGCTACAACATGATACTTAC+CGG 0.400952 1_2:-62787767 Msa0083670:CDS
AGACTCAATCCGGCGGTTCA+TGG 0.402151 1_2:-62788542 Msa0083670:CDS
AATTGGTTCATTCATAACTC+TGG 0.403047 1_2:-62788433 Msa0083670:CDS
AGAGAAACTTACAAATTCAA+TGG 0.403178 1_2:+62791244 None:intergenic
TTGGAAGCATTAGGAATAGA+AGG 0.405567 1_2:-62787151 Msa0083670:three_prime_UTR
CTCTCTAAATAATCGATTCA+AGG 0.406351 1_2:-62787978 Msa0083670:CDS
GAATCTAACTTCCTTGTCTT+GGG 0.411558 1_2:-62788404 Msa0083670:CDS
CAAACCACCTTTCACAAAAT+GGG 0.413046 1_2:-62791590 Msa0083670:exon
AAATATGCACGGACACATAA+AGG 0.414287 1_2:-62787788 Msa0083670:CDS
GACAGTTGATTATGTGAAAC+CGG 0.419715 1_2:-62787600 Msa0083670:CDS
AGTTTCTGAGGAATGTCTTC+AGG 0.420786 1_2:+62787093 None:intergenic
CGATGATAGCGCGGCTTGGC+CGG 0.421476 1_2:-62790896 Msa0083670:CDS
ATAGTATTAGTATGGACTAA+TGG 0.424608 1_2:-62787414 Msa0083670:exon
ATAATCTTTGTAGCTGGAGT+TGG 0.425291 1_2:-62788262 Msa0083670:CDS
AATGATAAAGGAATCAATAA+GGG 0.426417 1_2:+62788993 None:intergenic
AATTCTTTGTCTCATAGAAC+AGG 0.427122 1_2:+62789339 None:intergenic
CAACATCCTGACCGGATTGT+TGG 0.428753 1_2:-62787860 Msa0083670:CDS
ATGGGTTCCGGTCAGATTAA+CGG 0.429979 1_2:-62791572 Msa0083670:CDS
ATCTTACCTCGGAGAAATGT+TGG 0.431402 1_2:+62788322 None:intergenic
AGTTTCAAAGAGTACGGATA+AGG 0.433171 1_2:-62789291 Msa0083670:CDS
GGAATAGAAGGATGGGCAAA+TGG 0.438464 1_2:-62787139 Msa0083670:three_prime_UTR
GGTTGGATTGGTGTTATGGA+TGG 0.439578 1_2:-62788583 Msa0083670:CDS
TGGGAGCTCGCAATGGAGGC+AGG 0.442449 1_2:-62788819 Msa0083670:CDS
GGATTGTTGGATTCTATCCT+CGG 0.443384 1_2:-62787847 Msa0083670:CDS
GTTACTACCACCACCGTTGT+TGG 0.445693 1_2:+62791526 None:intergenic
AACGTCTTCCGTCTGGTGGT+TGG 0.445900 1_2:-62788600 Msa0083670:CDS
TTGATTATGTGAAACCGGCT+TGG 0.446271 1_2:-62787595 Msa0083670:CDS
CCATTGCTAGCTTCTATGGT+TGG 0.451469 1_2:-62791382 Msa0083670:CDS
CGACAGTAGGAGAGATGGTT+GGG 0.452982 1_2:-62787441 Msa0083670:CDS
TGATTATGTGAAACCGGCTT+GGG 0.453603 1_2:-62787594 Msa0083670:CDS
CTTACTATAATCTTTGTAGC+TGG 0.454212 1_2:-62788268 Msa0083670:CDS
TATAACATTGACAAGAGCTT+GGG 0.454360 1_2:-62788838 Msa0083670:CDS
CAAAGAAATTGAAGTACCAT+TGG 0.455009 1_2:-62788689 Msa0083670:CDS
TGCGAGTATTGACCTTTCAA+TGG 0.455048 1_2:+62788181 None:intergenic
ATGATGACAATGAGGGTTCT+TGG 0.455448 1_2:-62791310 Msa0083670:CDS
GAGAAACTTACAAATTCAAT+GGG 0.460045 1_2:+62791245 None:intergenic
AAGTTTAGCCGATCGAAAAT+GGG 0.461026 1_2:-62787468 Msa0083670:CDS
TCTATCCTCGGCTTATTGCC+GGG 0.461511 1_2:-62787835 Msa0083670:CDS
TCTTACCTCGGAGAAATGTT+GGG 0.461948 1_2:+62788323 None:intergenic
AATTATGCCTCAAAACCCTT+GGG 0.463371 1_2:-62787203 Msa0083670:three_prime_UTR
CTTCCGTCTGGTGGTTGGAT+TGG 0.464986 1_2:-62788595 Msa0083670:CDS
GTTGGATTGGTGTTATGGAT+GGG 0.465211 1_2:-62788582 Msa0083670:CDS
CTCGGAGAAATGTTGGGACT+CGG 0.469842 1_2:+62788329 None:intergenic
TTGGATTGGTGTTATGGATG+GGG 0.476704 1_2:-62788581 Msa0083670:CDS
CCTTTATCATTGACTATGAT+GGG 0.476834 1_2:-62788981 Msa0083670:CDS
AAAGAAATTGAAGTACCATT+GGG 0.480045 1_2:-62788688 Msa0083670:CDS
ACCACCAGACGGAAGACGTT+GGG 0.480499 1_2:+62788603 None:intergenic
ACCTTTCACAAAATGGGTTC+CGG 0.482042 1_2:-62791584 Msa0083670:exon
CCATTATGCTCAAATACATA+AGG 0.483104 1_2:+62789212 None:intergenic
TTTGTATTCATCAGCTGTAA+GGG 0.484731 1_2:+62788708 None:intergenic
TTGACTATGATGGGAAGTAT+TGG 0.487593 1_2:-62788972 Msa0083670:CDS
AAATTATGCCTCAAAACCCT+TGG 0.489743 1_2:-62787204 Msa0083670:three_prime_UTR
GGGATGCAATTGGAAGCATT+AGG 0.490007 1_2:-62787160 Msa0083670:three_prime_UTR
TGATGATGTTGGGATGCAAT+TGG 0.491252 1_2:-62787170 Msa0083670:three_prime_UTR
AAGATGCCAATCCTCATTCA+AGG 0.491489 1_2:+62789241 None:intergenic
CGAAGGAAATCTTTACCGTA+TGG 0.492098 1_2:-62788785 Msa0083670:CDS
GATGCCCAACGTCTTCCGTC+TGG 0.493272 1_2:-62788607 Msa0083670:CDS
GAATCTAGATCACTAACTTC+CGG 0.493581 1_2:+62788037 None:intergenic
TGTCATCATGACAACCAAAA+GGG 0.495807 1_2:+62791324 None:intergenic
AAATCTTTACCGTATGGGTC+AGG 0.496835 1_2:-62788779 Msa0083670:CDS
TTATAACATTGACAAGAGCT+TGG 0.499394 1_2:-62788839 Msa0083670:CDS
TTGTCATCATGACAACCAAA+AGG 0.500668 1_2:+62791323 None:intergenic
GTGCTATTGGGTGTGTTGCT+CGG 0.501820 1_2:-62788481 Msa0083670:CDS
GCAATTCACCTCTCGGTCCA+TGG 0.502000 1_2:-62788885 Msa0083670:CDS
TGATCTAGATTCAGCGGTAC+CGG 0.505621 1_2:-62788026 Msa0083670:CDS
TTTCAAGAGGTACTGGGGAG+AGG 0.505985 1_2:-62787717 Msa0083670:CDS
AGAGCCACCGCGTTACAAAT+GGG 0.508463 1_2:+62791617 None:intergenic
TGAATCAATAAATGCTGCAC+CGG 0.512023 1_2:+62787748 None:intergenic
ATTGGTTCATTCATAACTCT+GGG 0.512978 1_2:-62788432 Msa0083670:CDS
GGGTCAGCAACAAAATTACT+TGG 0.515463 1_2:+62790826 None:intergenic
CAGGACTGTGGTGATACGTA+TGG 0.516883 1_2:-62788760 Msa0083670:CDS
ACCGGTAAGGATCAGGGTAG+AGG 0.518173 1_2:-62788008 Msa0083670:CDS
ACTAGGAATTGCCTTGAATG+AGG 0.521328 1_2:-62789252 Msa0083670:CDS
TAGCAATGGATCCAAAGAAA+AGG 0.521642 1_2:+62791396 None:intergenic
GTATGAAGTGTTGGTGTTGG+TGG 0.522447 1_2:-62791487 Msa0083670:CDS
GTTTCAAAGAGTACGGATAA+GGG 0.523002 1_2:-62789290 Msa0083670:CDS
CATTGCACTTTCCTTTGCAG+TGG 0.523498 1_2:-62789044 Msa0083670:CDS
TATTGGAGTTTCAAAGAGTA+CGG 0.524365 1_2:-62789297 Msa0083670:CDS
TGAGTATGAAGTGTTGGTGT+TGG 0.525479 1_2:-62791490 Msa0083670:CDS
TAGAATCCAACAATCCGGTC+AGG 0.527675 1_2:+62787854 None:intergenic
GAAGAACCTTATCCATTGAA+AGG 0.528597 1_2:-62788193 Msa0083670:CDS
TGTATTTGAGCATAATGGCC+AGG 0.530888 1_2:-62789207 Msa0083670:intron
TTCCTTCTGGAGACTCAATC+CGG 0.531875 1_2:-62788552 Msa0083670:CDS
TAATGTCGTCATCGAGCTCA+AGG 0.532235 1_2:+62787927 None:intergenic
GGTCAGATTAACGGCGGTGT+AGG 0.532670 1_2:-62791563 Msa0083670:CDS
GAATTGCCTTGAATGAGGAT+TGG 0.533054 1_2:-62789247 Msa0083670:CDS
GAGAGGAAGCTAAGCAAGGG+AGG 0.533300 1_2:-62787700 Msa0083670:CDS
GATAATGCACCTTCGTGTTG+CGG 0.533746 1_2:+62787534 None:intergenic
TCTGTACTTTAATGGGCTCC+CGG 0.533855 1_2:+62787817 None:intergenic
GTGATATGAGTATGAAGTGT+TGG 0.534977 1_2:-62791496 Msa0083670:CDS
GAAAATGGGGATTCGACAGT+AGG 0.535860 1_2:-62787454 Msa0083670:CDS
ATTAACGGCGGTGTAGGCGG+CGG 0.540315 1_2:-62791557 Msa0083670:CDS
GCATAATGCTTGTGCTAGGA+GGG 0.541579 1_2:-62788296 Msa0083670:CDS
CAGATTAACGGCGGTGTAGG+CGG 0.542388 1_2:-62791560 Msa0083670:CDS
CATTATGCTTTATCTTACCT+CGG 0.542422 1_2:+62788311 None:intergenic
TAGATTCAGCGGTACCGGTA+AGG 0.543691 1_2:-62788021 Msa0083670:CDS
AATCAGAATTACAGTTTCTG+AGG 0.544271 1_2:+62787081 None:intergenic
GAAAGAGATTCATGAACAGA+AGG 0.544334 1_2:+62791347 None:intergenic
TCGACAGTAGGAGAGATGGT+TGG 0.545034 1_2:-62787442 Msa0083670:CDS
ATTCAAAACTAGCTTTCAAG+AGG 0.546190 1_2:-62787730 Msa0083670:CDS
TCAATCCGGCGGTTCATGGT+TGG 0.548450 1_2:-62788538 Msa0083670:CDS
AGCTAAGCAAGGGAGGGAAG+TGG 0.548606 1_2:-62787693 Msa0083670:CDS
ACTAGCTTTCAAGAGGTACT+GGG 0.549497 1_2:-62787723 Msa0083670:CDS
ATCACAGATATATATGATGC+CGG 0.552195 1_2:-62789103 Msa0083670:intron
GTCACCACAGGATTCGCTAC+CGG 0.553989 1_2:+62790877 None:intergenic
GCCCAACGTCTTCCGTCTGG+TGG 0.557248 1_2:-62788604 Msa0083670:CDS
TGGTACAGCAATTCACCTCT+CGG 0.557368 1_2:-62788892 Msa0083670:CDS
ATGCCGGAAGGGAGTAAAAG+AGG 0.559467 1_2:-62789087 Msa0083670:CDS
TGGTGATACGTATGGGAGAC+GGG 0.560756 1_2:-62788752 Msa0083670:CDS
GAGGATAGAATCCAACAATC+CGG 0.563211 1_2:+62787849 None:intergenic
AGCATAATGCTTGTGCTAGG+AGG 0.563853 1_2:-62788297 Msa0083670:CDS
TAAAGCATAATGCTTGTGCT+AGG 0.565788 1_2:-62788300 Msa0083670:CDS
TCATTCATAACTCTGGGAAG+AGG 0.566130 1_2:-62788426 Msa0083670:CDS
AAGCATTAGGAATAGAAGGA+TGG 0.570766 1_2:-62787147 Msa0083670:three_prime_UTR
CGAACGATGATAGCGCGGCT+TGG 0.572568 1_2:-62790900 Msa0083670:CDS
AAGAGCCGAAATGCGTGGAA+TGG 0.573439 1_2:-62788649 Msa0083670:CDS
GTTCCACAGGCGAGCATCGT+AGG 0.573695 1_2:+62788138 None:intergenic
AACTCCAATATCACCTTGCA+TGG 0.573916 1_2:+62789310 None:intergenic
CGTTCTCTTCAAAAGTAAGA+CGG 0.576152 1_2:-62788369 Msa0083670:CDS
GTTGCGGCTAATCGCTGCAC+CGG 0.576470 1_2:+62787550 None:intergenic
TTGTATGAACTGTCAAATGC+GGG 0.576891 1_2:-62791643 Msa0083670:five_prime_UTR
CACAACCAACCATGAACCGC+CGG 0.576997 1_2:+62788533 None:intergenic
TACACCGCCGTTAATCTGAC+CGG 0.577914 1_2:+62791565 None:intergenic
GTGGAACAAGGGAATCCCTC+CGG 0.579260 1_2:-62788056 Msa0083670:CDS
AAGAATTCAATCACCATGCA+AGG 0.579369 1_2:-62789323 Msa0083670:CDS
AGCATTAGGAATAGAAGGAT+GGG 0.579569 1_2:-62787146 Msa0083670:three_prime_UTR
GGAGCAACATGGCAGCAACT+AGG 0.582780 1_2:-62789269 Msa0083670:CDS
AAGAGCTTGGGAGCTCGCAA+TGG 0.585420 1_2:-62788826 Msa0083670:CDS
CATACATCTTCAAGTTCCAC+AGG 0.588362 1_2:+62788125 None:intergenic
CAGATATATATGATGCCGGA+AGG 0.589587 1_2:-62789099 Msa0083670:CDS
TGGGGAGAGGAAGCTAAGCA+AGG 0.590285 1_2:-62787704 Msa0083670:CDS
GATCGTTGTGGTGTGGAACA+AGG 0.592038 1_2:-62788068 Msa0083670:CDS
AGCTTGGGAGCTCGCAATGG+AGG 0.592698 1_2:-62788823 Msa0083670:CDS
GACGTTGGGCATCTAAGTGA+TGG 0.595031 1_2:+62788617 None:intergenic
TCTGGCGTCAACATCCTGAC+CGG 0.596046 1_2:-62787868 Msa0083670:CDS
AGGACTGTGGTGATACGTAT+GGG 0.601094 1_2:-62788759 Msa0083670:CDS
TCTCATACCAACAACGGTGG+TGG 0.606083 1_2:-62791533 Msa0083670:CDS
ATGATAAAGGAATCAATAAG+GGG 0.606565 1_2:+62788994 None:intergenic
GGGGAGAGGAAGCTAAGCAA+GGG 0.608405 1_2:-62787703 Msa0083670:CDS
GGCAGGCCATTTAAATACGA+AGG 0.608753 1_2:-62788802 Msa0083670:CDS
GGTTGTCATGATGACAATGA+GGG 0.609801 1_2:-62791317 Msa0083670:CDS
AGCGATTAGCCGCAACACGA+AGG 0.609845 1_2:-62787543 Msa0083670:CDS
AGCGGTACCGGTAAGGATCA+GGG 0.609885 1_2:-62788014 Msa0083670:CDS
TTATGCCTCAAAACCCTTGG+GGG 0.612517 1_2:-62787201 Msa0083670:three_prime_UTR
CGCCGGATTGAGTCTCCAGA+AGG 0.613527 1_2:+62788550 None:intergenic
TACCGTATGGGTCAGGACTG+TGG 0.613693 1_2:-62788772 Msa0083670:CDS
GAAGTGTCGATAGCCCAAGC+CGG 0.614580 1_2:+62787581 None:intergenic
GAAGGAAATCTTTACCGTAT+GGG 0.615740 1_2:-62788784 Msa0083670:CDS
ATGTTGGGACTCGGTTCACG+CGG 0.617024 1_2:+62788338 None:intergenic
ATTTGGTCTTTCCCAAGACA+AGG 0.619015 1_2:+62788393 None:intergenic
GTGGTGATACGTATGGGAGA+CGG 0.619253 1_2:-62788753 Msa0083670:CDS
TTCTGTGTCTGAGATCGTTG+TGG 0.621604 1_2:-62788080 Msa0083670:CDS
TGACCTACGATGCTCGCCTG+TGG 0.622217 1_2:-62788141 Msa0083670:CDS
GTCATCATGACAACCAAAAG+GGG 0.624661 1_2:+62791325 None:intergenic
GGATTCGACAGTAGGAGAGA+TGG 0.626958 1_2:-62787446 Msa0083670:CDS
AAACTGTAATTCTGATTCTG+GGG 0.627313 1_2:-62787075 Msa0083670:three_prime_UTR
AGATATATATGATGCCGGAA+GGG 0.631328 1_2:-62789098 Msa0083670:CDS
AACCACCAGACGGAAGACGT+TGG 0.631744 1_2:+62788602 None:intergenic
TATGAATGAACCAATTGAGA+GGG 0.632355 1_2:+62788440 None:intergenic
AGTTTAGCCGATCGAAAATG+GGG 0.632696 1_2:-62787467 Msa0083670:CDS
CAAACAAGAGCCGAAATGCG+TGG 0.635974 1_2:-62788654 Msa0083670:CDS
TGGTTGTCATGATGACAATG+AGG 0.636031 1_2:-62791318 Msa0083670:CDS
ACAGATGCACAAGTCACCAC+AGG 0.637261 1_2:+62790865 None:intergenic
AGAGGAAGCTAAGCAAGGGA+GGG 0.637342 1_2:-62787699 Msa0083670:CDS
CACCACAGTCCTGACCCATA+CGG 0.637381 1_2:+62788770 None:intergenic
ATTATGCCTCAAAACCCTTG+GGG 0.639024 1_2:-62787202 Msa0083670:three_prime_UTR
TAAGCAAGGGAGGGAAGTGG+TGG 0.643612 1_2:-62787690 Msa0083670:CDS
ATCGTTGTGGTGTGGAACAA+GGG 0.644387 1_2:-62788067 Msa0083670:CDS
TTATGAATGAACCAATTGAG+AGG 0.646864 1_2:+62788439 None:intergenic
TCTAGATCACTAACTTCCGG+AGG 0.648134 1_2:+62788040 None:intergenic
GCGACCCATTTGTAACGCGG+TGG 0.652150 1_2:-62791621 Msa0083670:five_prime_UTR
CTAGATCACTAACTTCCGGA+GGG 0.652302 1_2:+62788041 None:intergenic
CAAATGCTAGTTCATCGTCA+AGG 0.655114 1_2:-62787622 Msa0083670:CDS
GGAGTTGGATTGATGTGCGT+AGG 0.660500 1_2:-62788247 Msa0083670:CDS
AGTTAGTGATCTAGATTCAG+CGG 0.661489 1_2:-62788032 Msa0083670:CDS
CCAACCATAGAAGCTAGCAA+TGG 0.663121 1_2:+62791382 None:intergenic
TGTCTGAGATCGTTGTGGTG+TGG 0.663302 1_2:-62788075 Msa0083670:CDS
ACACCAATCCAACCACCAGA+CGG 0.667048 1_2:+62788592 None:intergenic
GTTGTATGAACTGTCAAATG+CGG 0.667708 1_2:-62791644 Msa0083670:five_prime_UTR
GGCGGTTCTCATACCAACAA+CGG 0.667983 1_2:-62791539 Msa0083670:CDS
TTTGACTCAACAAAGCCCAA+TGG 0.669676 1_2:+62788673 None:intergenic
GGGCTCCCGGCAATAAGCCG+AGG 0.671052 1_2:+62787830 None:intergenic
CGGGCGACCCATTTGTAACG+CGG 0.673342 1_2:-62791624 Msa0083670:five_prime_UTR
TGAGGTTTCCATGGACCGAG+AGG 0.673472 1_2:+62788877 None:intergenic
TGTTGGGACTCGGTTCACGC+GGG 0.677835 1_2:+62788339 None:intergenic
CTAGCTTTCAAGAGGTACTG+GGG 0.677896 1_2:-62787722 Msa0083670:CDS
CTTCTGGAGACTCAATCCGG+CGG 0.689338 1_2:-62788549 Msa0083670:CDS
TGTATCGAACGATGATAGCG+CGG 0.689557 1_2:-62790905 Msa0083670:CDS
ACATGTGATGATGTTGAGCG+AGG 0.706003 1_2:-62787899 Msa0083670:CDS
TTGGCCGGTAGCGAATCCTG+TGG 0.708560 1_2:-62790881 Msa0083670:CDS
GGGAGCCCATTAAAGTACAG+AGG 0.710310 1_2:-62787815 Msa0083670:CDS
GCATTTGACAGTTCATACAA+CGG 0.712330 1_2:+62791646 None:intergenic
GTACGGATAAGGGAGCAACA+TGG 0.724011 1_2:-62789280 Msa0083670:CDS
CGAGTCCCAACATTTCTCCG+AGG 0.734337 1_2:-62788328 Msa0083670:CDS
GGTTCTCATACCAACAACGG+TGG 0.754572 1_2:-62791536 Msa0083670:CDS
GGTTCCGGTCAGATTAACGG+CGG 0.764385 1_2:-62791569 Msa0083670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAACAATATGTATATAAAAA+AGG + chr1_2:62788022-62788041 None:intergenic 10.0%
!! ATATAAAAAATAAAATACCT+AGG + chr1_2:62789263-62789282 None:intergenic 10.0%
!!! TAAATTTACTTTATTTTTCA+CGG + chr1_2:62789510-62789529 None:intergenic 10.0%
!! AAATAAAAAAAATCACAAAT+GGG + chr1_2:62791382-62791401 None:intergenic 10.0%
!! AAAATAAAAAAAATCACAAA+TGG + chr1_2:62791383-62791402 None:intergenic 10.0%
!!! AATGAGTTTTTTTTTTTAAC+TGG - chr1_2:62787668-62787687 Msa0083670:CDS 15.0%
!!! ATGAGTTTTTTTTTTTAACT+GGG - chr1_2:62787669-62787688 Msa0083670:CDS 15.0%
!!! TGATAAAGATTCTTAATTTT+AGG - chr1_2:62788363-62788382 Msa0083670:CDS 15.0%
!! AAAGTAAAACTAAATAATAC+AGG - chr1_2:62788565-62788584 Msa0083670:CDS 15.0%
!! AAGTAAAACTAAATAATACA+GGG - chr1_2:62788566-62788585 Msa0083670:CDS 15.0%
!! GTAGGATTTAAAAATATTTA+TGG - chr1_2:62790454-62790473 Msa0083670:intron 15.0%
!!! TGTGATTTTTTTTATTTTAG+AGG - chr1_2:62791385-62791404 Msa0083670:CDS 15.0%
!!! GTGATTTTTTTTATTTTAGA+GGG - chr1_2:62791386-62791405 Msa0083670:CDS 15.0%
!!! GGTATTTGTTTTTATGATTT+TGG - chr1_2:62787690-62787709 Msa0083670:CDS 20.0%
!!! TTTTTATGATTTTGGTTTGA+GGG - chr1_2:62787698-62787717 Msa0083670:CDS 20.0%
!! TTACCTGAATAAAAAGAAAA+GGG + chr1_2:62787880-62787899 None:intergenic 20.0%
!! ATAAATGAGATGAAAGTTTA+TGG - chr1_2:62788198-62788217 Msa0083670:CDS 20.0%
!! CAAAAAATTTAGTTGCAATA+GGG - chr1_2:62788433-62788452 Msa0083670:CDS 20.0%
!! AATGAAACTTCTCTAAATTT+AGG - chr1_2:62788762-62788781 Msa0083670:CDS 20.0%
!!! TCATTGTTTTCTCATTTTTT+TGG - chr1_2:62789021-62789040 Msa0083670:CDS 20.0%
!!! CATTGTTTTCTCATTTTTTT+GGG - chr1_2:62789022-62789041 Msa0083670:CDS 20.0%
!! AATGATAAAGGAATCAATAA+GGG + chr1_2:62789693-62789712 None:intergenic 20.0%
!! TCTTGTCAATGTTATAAATA+GGG + chr1_2:62789841-62789860 None:intergenic 20.0%
!! GGATTTAAAAATATTTATGG+TGG - chr1_2:62790457-62790476 Msa0083670:intron 20.0%
!! AAAAATATTTATGGTGGTAA+TGG - chr1_2:62790463-62790482 Msa0083670:intron 20.0%
!!! CAATTGTCTAATGAAATTTT+CGG - chr1_2:62791182-62791201 Msa0083670:intron 20.0%
!!! TTTTTTTTTAGTTAGGTCTT+TGG - chr1_2:62791296-62791315 Msa0083670:CDS 20.0%
!!! TATTTTGTTACATCTTTTGT+GGG - chr1_2:62791331-62791350 Msa0083670:CDS 20.0%
!!! ATGTAAATTTGGTTCTATAA+TGG - chr1_2:62791433-62791452 Msa0083670:CDS 20.0%
!!! TGGTATTGTAAAAGTTATTT+TGG - chr1_2:62791706-62791725 Msa0083670:five_prime_UTR 20.0%
!!! AGTAAGTTGAATACAAATTT+TGG - chr1_2:62791734-62791753 Msa0083670:five_prime_UTR 20.0%
!!! TTTCGCTTTTTTGTTGTTTT+TGG + chr1_2:62787015-62787034 None:intergenic 25.0%
! GAGAAACTTACAAATTCAAT+GGG + chr1_2:62787441-62787460 None:intergenic 25.0%
! AGAGAAACTTACAAATTCAA+TGG + chr1_2:62787442-62787461 None:intergenic 25.0%
! AAATTCACAACACATAACAA+GGG + chr1_2:62787609-62787628 None:intergenic 25.0%
! AAAATTCACAACACATAACA+AGG + chr1_2:62787610-62787629 None:intergenic 25.0%
!! TTGTTATGTGTTGTGAATTT+TGG - chr1_2:62787609-62787628 Msa0083670:CDS 25.0%
!!! GTTTTTATGATTTTGGTTTG+AGG - chr1_2:62787697-62787716 Msa0083670:CDS 25.0%
!!! TTTTATGATTTTGGTTTGAG+GGG - chr1_2:62787699-62787718 Msa0083670:CDS 25.0%
! CTTACCTGAATAAAAAGAAA+AGG + chr1_2:62787881-62787900 None:intergenic 25.0%
! TCTTTATTCCTTTGTATATC+TGG - chr1_2:62787918-62787937 Msa0083670:CDS 25.0%
! ATAAAAAAGGTGAGAATTTC+TGG + chr1_2:62788009-62788028 None:intergenic 25.0%
! ATCAAGCTTCAATTAATTGA+GGG + chr1_2:62788084-62788103 None:intergenic 25.0%
! TATCAAGCTTCAATTAATTG+AGG + chr1_2:62788085-62788104 None:intergenic 25.0%
! TCTGATTATGACATCATATA+TGG - chr1_2:62788175-62788194 Msa0083670:CDS 25.0%
! TTATGTTGTTCTTATCTACA+AGG - chr1_2:62788241-62788260 Msa0083670:CDS 25.0%
!!! AGGTTTTATTCTTAACTACA+AGG - chr1_2:62788261-62788280 Msa0083670:CDS 25.0%
! CTTATAGCAAAATCATCAAT+TGG - chr1_2:62788312-62788331 Msa0083670:CDS 25.0%
! TATATCTATCTATGTGTTGA+AGG - chr1_2:62788403-62788422 Msa0083670:CDS 25.0%
!!! CCTATTGCAACTAAATTTTT+TGG + chr1_2:62788435-62788454 None:intergenic 25.0%
! CCAAAAAATTTAGTTGCAAT+AGG - chr1_2:62788432-62788451 Msa0083670:CDS 25.0%
! TTTCCTTTCTCAAACAAAAT+AGG + chr1_2:62788722-62788741 None:intergenic 25.0%
! TTCTCTAAATTTAGGAACAA+AGG - chr1_2:62788770-62788789 Msa0083670:CDS 25.0%
! ATGATAAAGGAATCAATAAG+GGG + chr1_2:62789692-62789711 None:intergenic 25.0%
! CAATGATAAAGGAATCAATA+AGG + chr1_2:62789694-62789713 None:intergenic 25.0%
! CTCTTGTCAATGTTATAAAT+AGG + chr1_2:62789842-62789861 None:intergenic 25.0%
! AGATTTCCTTCGTATTTAAA+TGG + chr1_2:62789890-62789909 None:intergenic 25.0%
!! AAAGAAATTGAAGTACCATT+GGG - chr1_2:62789995-62790014 Msa0083670:intron 25.0%
!! ATAGTATTAGTATGGACTAA+TGG - chr1_2:62791269-62791288 Msa0083670:CDS 25.0%
!!! TGGAGTGTTTTTTTTTAGTT+AGG - chr1_2:62791289-62791308 Msa0083670:CDS 25.0%
!! GTATTTTGTTACATCTTTTG+TGG - chr1_2:62791330-62791349 Msa0083670:CDS 25.0%
!!! TCAATTGTTGCTTTTTTACT+TGG - chr1_2:62791634-62791653 Msa0083670:five_prime_UTR 25.0%
!!! CTTAGAAATTGATTTTGACT+TGG - chr1_2:62791682-62791701 Msa0083670:five_prime_UTR 25.0%
!!! TATAACCGTTTTTTCTCTTC+TGG - chr1_2:62787240-62787259 Msa0083670:three_prime_UTR 30.0%
! TTTGCTTGTTTCCTTTTCTT+TGG - chr1_2:62787276-62787295 Msa0083670:three_prime_UTR 30.0%
! TGGTCTATTGGAATTTTCTA+TGG - chr1_2:62787393-62787412 Msa0083670:three_prime_UTR 30.0%
! TCAATGGGTTTAAGAGAAAA+AGG + chr1_2:62787426-62787445 None:intergenic 30.0%
!! TGGATTTTGTGTTTGTTACA+TGG - chr1_2:62787722-62787741 Msa0083670:CDS 30.0%
! TGACCCTTTTCTTTTTATTC+AGG - chr1_2:62787874-62787893 Msa0083670:CDS 30.0%
CTTGATATGAGAATGTTACA+TGG - chr1_2:62788098-62788117 Msa0083670:CDS 30.0%
AATGAGATGAAAGTTTATGG+TGG - chr1_2:62788201-62788220 Msa0083670:CDS 30.0%
ATGAGATGAAAGTTTATGGT+GGG - chr1_2:62788202-62788221 Msa0083670:CDS 30.0%
!!! ATCAATTGGTTTTACTGCTA+AGG - chr1_2:62788326-62788345 Msa0083670:CDS 30.0%
GTTATTTATCAACCAAGTGA+TGG + chr1_2:62788488-62788507 None:intergenic 30.0%
!! TCACTTGGTTGATAAATAAC+TGG - chr1_2:62788488-62788507 Msa0083670:CDS 30.0%
CTTTCTCAAACAAAATAGGA+TGG + chr1_2:62788718-62788737 None:intergenic 30.0%
!! CATCCTATTTTGTTTGAGAA+AGG - chr1_2:62788716-62788735 Msa0083670:CDS 30.0%
!! AATTGCACTGTTTTTCTAGA+AGG - chr1_2:62788821-62788840 Msa0083670:CDS 30.0%
! AGTGGTCATTTAAAGTGTTT+AGG - chr1_2:62788860-62788879 Msa0083670:CDS 30.0%
! AAAGTGTTTAGGATCTGTAT+TGG - chr1_2:62788871-62788890 Msa0083670:CDS 30.0%
! TTTTATCAGAACATGTTTGC+AGG + chr1_2:62788913-62788932 None:intergenic 30.0%
AGAAAACAATGAAGCAAAAG+AGG + chr1_2:62789013-62789032 None:intergenic 30.0%
!!! ACTGATGTTTTGACTTAGTT+TGG + chr1_2:62789069-62789088 None:intergenic 30.0%
ACATGAACATGAACATCTAT+AGG + chr1_2:62789138-62789157 None:intergenic 30.0%
ACTCGTTAATCACATTATTG+AGG - chr1_2:62789226-62789245 Msa0083670:CDS 30.0%
TAATGTCAATATGAGTGAAC+AGG + chr1_2:62789302-62789321 None:intergenic 30.0%
TCATATTGACATTACAATCC+AGG - chr1_2:62789308-62789327 Msa0083670:CDS 30.0%
CATATTGACATTACAATCCA+GGG - chr1_2:62789309-62789328 Msa0083670:CDS 30.0%
AATTCTTTGTCTCATAGAAC+AGG + chr1_2:62789347-62789366 None:intergenic 30.0%
TATTGGAGTTTCAAAGAGTA+CGG - chr1_2:62789386-62789405 Msa0083670:intron 30.0%
CCATTATGCTCAAATACATA+AGG + chr1_2:62789474-62789493 None:intergenic 30.0%
CCTTATGTATTTGAGCATAA+TGG - chr1_2:62789471-62789490 Msa0083670:intron 30.0%
ATCACAGATATATATGATGC+CGG - chr1_2:62789580-62789599 Msa0083670:intron 30.0%
! TCCTTTATCATTGACTATGA+TGG - chr1_2:62789701-62789720 Msa0083670:intron 30.0%
! CCTTTATCATTGACTATGAT+GGG - chr1_2:62789702-62789721 Msa0083670:intron 30.0%
! TAAATAGGGTTTTTCTTGTG+AGG + chr1_2:62789827-62789846 None:intergenic 30.0%
TTATAACATTGACAAGAGCT+TGG - chr1_2:62789844-62789863 Msa0083670:intron 30.0%
TATAACATTGACAAGAGCTT+GGG - chr1_2:62789845-62789864 Msa0083670:intron 30.0%
TTTGTATTCATCAGCTGTAA+GGG + chr1_2:62789978-62789997 None:intergenic 30.0%
! CAAAGAAATTGAAGTACCAT+TGG - chr1_2:62789994-62790013 Msa0083670:intron 30.0%
TATGAATGAACCAATTGAGA+GGG + chr1_2:62790246-62790265 None:intergenic 30.0%
TTATGAATGAACCAATTGAG+AGG + chr1_2:62790247-62790266 None:intergenic 30.0%
! AATTGGTTCATTCATAACTC+TGG - chr1_2:62790250-62790269 Msa0083670:intron 30.0%
! ATTGGTTCATTCATAACTCT+GGG - chr1_2:62790251-62790270 Msa0083670:intron 30.0%
CATTATGCTTTATCTTACCT+CGG + chr1_2:62790375-62790394 None:intergenic 30.0%
CTTACTATAATCTTTGTAGC+TGG - chr1_2:62790415-62790434 Msa0083670:intron 30.0%
TATTGACCTTTCAATGGATA+AGG + chr1_2:62790499-62790518 None:intergenic 30.0%
! CTCTCTAAATAATCGATTCA+AGG - chr1_2:62790705-62790724 Msa0083670:intron 30.0%
TTTCTCCTCTGTACTTTAAT+GGG + chr1_2:62790876-62790895 None:intergenic 30.0%
! TTTTCTCCTCTGTACTTTAA+TGG + chr1_2:62790877-62790896 None:intergenic 30.0%
!! ATTCAAAACTAGCTTTCAAG+AGG - chr1_2:62790953-62790972 Msa0083670:intron 30.0%
! ATGAAATTTTCGGAGATGTA+TGG - chr1_2:62791192-62791211 Msa0083670:intron 30.0%
TGGGATGTATAGTATTAGTA+TGG - chr1_2:62791261-62791280 Msa0083670:CDS 30.0%
!!! TTTTTTAGTTAGGTCTTTGG+TGG - chr1_2:62791299-62791318 Msa0083670:CDS 30.0%
ATGTCTGCAACATGTAAATT+TGG - chr1_2:62791422-62791441 Msa0083670:CDS 30.0%
AATCAGAATTACAGTTTCTG+AGG + chr1_2:62791605-62791624 None:intergenic 30.0%
AGAAACTGTAATTCTGATTC+TGG - chr1_2:62791606-62791625 Msa0083670:five_prime_UTR 30.0%
GAAACTGTAATTCTGATTCT+GGG - chr1_2:62791607-62791626 Msa0083670:five_prime_UTR 30.0%
AAACTGTAATTCTGATTCTG+GGG - chr1_2:62791608-62791627 Msa0083670:five_prime_UTR 30.0%
!!! GAAATTGATTTTGACTTGGT+TGG - chr1_2:62791686-62791705 Msa0083670:five_prime_UTR 30.0%
!! CTCTCTAGGAATTTTGACAA+AGG + chr1_2:62786979-62786998 None:intergenic 35.0%
GCATTTGACAGTTCATACAA+CGG + chr1_2:62787040-62787059 None:intergenic 35.0%
GTTGTATGAACTGTCAAATG+CGG - chr1_2:62787039-62787058 Msa0083670:three_prime_UTR 35.0%
TTGTATGAACTGTCAAATGC+GGG - chr1_2:62787040-62787059 Msa0083670:three_prime_UTR 35.0%
! ATTTTGTGAAAGGTGGTTTG+TGG + chr1_2:62787093-62787112 None:intergenic 35.0%
ACAAACCACCTTTCACAAAA+TGG - chr1_2:62787092-62787111 Msa0083670:three_prime_UTR 35.0%
CAAACCACCTTTCACAAAAT+GGG - chr1_2:62787093-62787112 Msa0083670:three_prime_UTR 35.0%
GTGATATGAGTATGAAGTGT+TGG - chr1_2:62787187-62787206 Msa0083670:three_prime_UTR 35.0%
CGAAACCAGAAGAGAAAAAA+CGG + chr1_2:62787248-62787267 None:intergenic 35.0%
TAGCAATGGATCCAAAGAAA+AGG + chr1_2:62787290-62787309 None:intergenic 35.0%
GAAAGAGATTCATGAACAGA+AGG + chr1_2:62787339-62787358 None:intergenic 35.0%
TGTCATCATGACAACCAAAA+GGG + chr1_2:62787362-62787381 None:intergenic 35.0%
TTGTCATCATGACAACCAAA+AGG + chr1_2:62787363-62787382 None:intergenic 35.0%
!! TGTGTTGTGAATTTTGGTGT+TGG - chr1_2:62787615-62787634 Msa0083670:CDS 35.0%
!!! GTGTTGTGAATTTTGGTGTT+GGG - chr1_2:62787616-62787635 Msa0083670:CDS 35.0%
TTGTTACATGGAAGTGATGA+TGG - chr1_2:62787734-62787753 Msa0083670:CDS 35.0%
AAAGCACACCAGATATACAA+AGG + chr1_2:62787929-62787948 None:intergenic 35.0%
TTTGTATATCTGGTGTGCTT+TGG - chr1_2:62787928-62787947 Msa0083670:CDS 35.0%
! TTGTTCCTTGTGTACCTTTT+TGG - chr1_2:62787979-62787998 Msa0083670:CDS 35.0%
TTCATTGCCAAGTCAATGTT+TGG - chr1_2:62788044-62788063 Msa0083670:CDS 35.0%
! GTTGTATCCAAACATTGACT+TGG + chr1_2:62788054-62788073 None:intergenic 35.0%
TCAATTAATTGAGGGATTGG+TGG + chr1_2:62788076-62788095 None:intergenic 35.0%
GCTTCAATTAATTGAGGGAT+TGG + chr1_2:62788079-62788098 None:intergenic 35.0%
TTACAACACAAACAACCAAG+TGG + chr1_2:62788546-62788565 None:intergenic 35.0%
! CAGTCTGATTTTTCTTCCTT+TGG - chr1_2:62788691-62788710 Msa0083670:CDS 35.0%
AACAAAATAGGATGGTCCAA+AGG + chr1_2:62788710-62788729 None:intergenic 35.0%
AAGGCGAATCAGTATTCATA+AGG - chr1_2:62788789-62788808 Msa0083670:CDS 35.0%
GGATTAACAGTTATGTACAG+TGG - chr1_2:62788842-62788861 Msa0083670:CDS 35.0%
AGGATCTGTATTGGAGAATA+AGG - chr1_2:62788880-62788899 Msa0083670:CDS 35.0%
AAGAATTCAATCACCATGCA+AGG - chr1_2:62789360-62789379 Msa0083670:intron 35.0%
! AGTTTCAAAGAGTACGGATA+AGG - chr1_2:62789392-62789411 Msa0083670:intron 35.0%
! GTTTCAAAGAGTACGGATAA+GGG - chr1_2:62789393-62789412 Msa0083670:intron 35.0%
! TTTTTCACGGAAACAATACC+TGG + chr1_2:62789497-62789516 None:intergenic 35.0%
AGATATATATGATGCCGGAA+GGG - chr1_2:62789585-62789604 Msa0083670:intron 35.0%
! TTTTCCAATTTCCACTGCAA+AGG + chr1_2:62789653-62789672 None:intergenic 35.0%
CCCATCATAGTCAATGATAA+AGG + chr1_2:62789705-62789724 None:intergenic 35.0%
! TTGACTATGATGGGAAGTAT+TGG - chr1_2:62789711-62789730 Msa0083670:intron 35.0%
! TTTTTCTTGTGAGGTTTCCA+TGG + chr1_2:62789818-62789837 None:intergenic 35.0%
GAAGGAAATCTTTACCGTAT+GGG - chr1_2:62789899-62789918 Msa0083670:intron 35.0%
CTTTGTATTCATCAGCTGTA+AGG + chr1_2:62789979-62789998 None:intergenic 35.0%
TGCTATACTCATTGTGCTAT+TGG - chr1_2:62790189-62790208 Msa0083670:intron 35.0%
! GCTATACTCATTGTGCTATT+GGG - chr1_2:62790190-62790209 Msa0083670:intron 35.0%
ATTGTATTGTCCCTCTCAAT+TGG - chr1_2:62790233-62790252 Msa0083670:intron 35.0%
GAATCTAACTTCCTTGTCTT+GGG - chr1_2:62790279-62790298 Msa0083670:intron 35.0%
!! ACTTTTGAAGAGAACGCATT+TGG + chr1_2:62790310-62790329 None:intergenic 35.0%
CGTTCTCTTCAAAAGTAAGA+CGG - chr1_2:62790314-62790333 Msa0083670:intron 35.0%
TAAAGCATAATGCTTGTGCT+AGG - chr1_2:62790383-62790402 Msa0083670:intron 35.0%
ATAATCTTTGTAGCTGGAGT+TGG - chr1_2:62790421-62790440 Msa0083670:intron 35.0%
GAAGAACCTTATCCATTGAA+AGG - chr1_2:62790490-62790509 Msa0083670:intron 35.0%
GAATCTAGATCACTAACTTC+CGG + chr1_2:62790649-62790668 None:intergenic 35.0%
AGTTAGTGATCTAGATTCAG+CGG - chr1_2:62790651-62790670 Msa0083670:intron 35.0%
! ACTGCTCGAGTTTTTATCAA+CGG + chr1_2:62790736-62790755 None:intergenic 35.0%
ACAGAGGAGAAAAATATGCA+CGG - chr1_2:62790884-62790903 Msa0083670:CDS 35.0%
AAATATGCACGGACACATAA+AGG - chr1_2:62790895-62790914 Msa0083670:CDS 35.0%
TGAATCAATAAATGCTGCAC+CGG + chr1_2:62790938-62790957 None:intergenic 35.0%
GACAGTTGATTATGTGAAAC+CGG - chr1_2:62791083-62791102 Msa0083670:intron 35.0%
! ATCGACACTTCAAAGTTTTC+CGG - chr1_2:62791114-62791133 Msa0083670:intron 35.0%
AAGTTTAGCCGATCGAAAAT+GGG - chr1_2:62791215-62791234 Msa0083670:intron 35.0%
AAATTATGCCTCAAAACCCT+TGG - chr1_2:62791479-62791498 Msa0083670:CDS 35.0%
AATTATGCCTCAAAACCCTT+GGG - chr1_2:62791480-62791499 Msa0083670:CDS 35.0%
!! TTGGAAGCATTAGGAATAGA+AGG - chr1_2:62791532-62791551 Msa0083670:CDS 35.0%
AAGCATTAGGAATAGAAGGA+TGG - chr1_2:62791536-62791555 Msa0083670:CDS 35.0%
AGCATTAGGAATAGAAGGAT+GGG - chr1_2:62791537-62791556 Msa0083670:CDS 35.0%
!!! GTTTTTGAGTCTCTCTCTCT+AGG + chr1_2:62786993-62787012 None:intergenic 40.0%
! ACCTTTCACAAAATGGGTTC+CGG - chr1_2:62787099-62787118 Msa0083670:three_prime_UTR 40.0%
!! TGAGTATGAAGTGTTGGTGT+TGG - chr1_2:62787193-62787212 Msa0083670:three_prime_UTR 40.0%
! CATGAATCTCTTTCCCCTTT+TGG - chr1_2:62787345-62787364 Msa0083670:three_prime_UTR 40.0%
GTCATCATGACAACCAAAAG+GGG + chr1_2:62787361-62787380 None:intergenic 40.0%
TGGTTGTCATGATGACAATG+AGG - chr1_2:62787365-62787384 Msa0083670:three_prime_UTR 40.0%
GGTTGTCATGATGACAATGA+GGG - chr1_2:62787366-62787385 Msa0083670:three_prime_UTR 40.0%
ATGATGACAATGAGGGTTCT+TGG - chr1_2:62787373-62787392 Msa0083670:three_prime_UTR 40.0%
AATGAGGGTTCTTGGTCTAT+TGG - chr1_2:62787381-62787400 Msa0083670:three_prime_UTR 40.0%
!!! AATTTTGGTGTTGGGAGTGT+TGG - chr1_2:62787624-62787643 Msa0083670:CDS 40.0%
!!! TATGATTTTGGTTTGAGGGG+TGG - chr1_2:62787702-62787721 Msa0083670:CDS 40.0%
GGGTCAGCAACAAAATTACT+TGG + chr1_2:62787860-62787879 None:intergenic 40.0%
! AGATGAAAGTTTATGGTGGG+TGG - chr1_2:62788205-62788224 Msa0083670:CDS 40.0%
!! GATGAAAGTTTATGGTGGGT+GGG - chr1_2:62788206-62788225 Msa0083670:CDS 40.0%
!! ATGAAAGTTTATGGTGGGTG+GGG - chr1_2:62788207-62788226 Msa0083670:CDS 40.0%
AGTAGCTCTTAGCATCACTA+AGG - chr1_2:62789086-62789105 Msa0083670:CDS 40.0%
TAGCATCACTAAGGCTGAAA+AGG - chr1_2:62789095-62789114 Msa0083670:CDS 40.0%
ATCACCATGCAAGGTGATAT+TGG - chr1_2:62789369-62789388 Msa0083670:intron 40.0%
AACTCCAATATCACCTTGCA+TGG + chr1_2:62789376-62789395 None:intergenic 40.0%
ACTAGGAATTGCCTTGAATG+AGG - chr1_2:62789431-62789450 Msa0083670:intron 40.0%
GAATTGCCTTGAATGAGGAT+TGG - chr1_2:62789436-62789455 Msa0083670:intron 40.0%
AAGATGCCAATCCTCATTCA+AGG + chr1_2:62789445-62789464 None:intergenic 40.0%
TGTATTTGAGCATAATGGCC+AGG - chr1_2:62789476-62789495 Msa0083670:intron 40.0%
CAGATATATATGATGCCGGA+AGG - chr1_2:62789584-62789603 Msa0083670:intron 40.0%
CTTTCCTTTGCAGTGGAAAT+TGG - chr1_2:62789646-62789665 Msa0083670:intron 40.0%
!!! GATGGGAAGTATTGGCTTTT+TGG - chr1_2:62789719-62789738 Msa0083670:intron 40.0%
!!! GAAGTATTGGCTTTTTGGCT+CGG - chr1_2:62789724-62789743 Msa0083670:intron 40.0%
!! GGTTTTGGCACCAAGAAAAA+CGG - chr1_2:62789755-62789774 Msa0083670:intron 40.0%
!! GTTTTGGCACCAAGAAAAAC+GGG - chr1_2:62789756-62789775 Msa0083670:intron 40.0%
CGAAGGAAATCTTTACCGTA+TGG - chr1_2:62789898-62789917 Msa0083670:intron 40.0%
AAATCTTTACCGTATGGGTC+AGG - chr1_2:62789904-62789923 Msa0083670:intron 40.0%
TTTGACTCAACAAAGCCCAA+TGG + chr1_2:62790013-62790032 None:intergenic 40.0%
!! GTTGGATTGGTGTTATGGAT+GGG - chr1_2:62790101-62790120 Msa0083670:intron 40.0%
!! TTGGATTGGTGTTATGGATG+GGG - chr1_2:62790102-62790121 Msa0083670:intron 40.0%
! TCATTCATAACTCTGGGAAG+AGG - chr1_2:62790257-62790276 Msa0083670:intron 40.0%
GGAATCTAACTTCCTTGTCT+TGG - chr1_2:62790278-62790297 Msa0083670:intron 40.0%
! ATTTGGTCTTTCCCAAGACA+AGG + chr1_2:62790293-62790312 None:intergenic 40.0%
TCTTACCTCGGAGAAATGTT+GGG + chr1_2:62790363-62790382 None:intergenic 40.0%
ATCTTACCTCGGAGAAATGT+TGG + chr1_2:62790364-62790383 None:intergenic 40.0%
!! TGCGAGTATTGACCTTTCAA+TGG + chr1_2:62790505-62790524 None:intergenic 40.0%
! CATACATCTTCAAGTTCCAC+AGG + chr1_2:62790561-62790580 None:intergenic 40.0%
! CTGCTCGAGTTTTTATCAAC+GGG + chr1_2:62790735-62790754 None:intergenic 40.0%
!! TTGAGCGAGGTTTTAATGTC+TGG - chr1_2:62790797-62790816 Msa0083670:intron 40.0%
GAGGATAGAATCCAACAATC+CGG + chr1_2:62790837-62790856 None:intergenic 40.0%
GGATTGTTGGATTCTATCCT+CGG - chr1_2:62790836-62790855 Msa0083670:CDS 40.0%
GGCTACAACATGATACTTAC+CGG - chr1_2:62790916-62790935 Msa0083670:intron 40.0%
!! AACTAGCTTTCAAGAGGTAC+TGG - chr1_2:62790959-62790978 Msa0083670:intron 40.0%
!! ACTAGCTTTCAAGAGGTACT+GGG - chr1_2:62790960-62790979 Msa0083670:intron 40.0%
CAAATGCTAGTTCATCGTCA+AGG - chr1_2:62791061-62791080 Msa0083670:intron 40.0%
TTGATTATGTGAAACCGGCT+TGG - chr1_2:62791088-62791107 Msa0083670:intron 40.0%
! TGATTATGTGAAACCGGCTT+GGG - chr1_2:62791089-62791108 Msa0083670:intron 40.0%
GAAGTTTAGCCGATCGAAAA+TGG - chr1_2:62791214-62791233 Msa0083670:intron 40.0%
AGTTTAGCCGATCGAAAATG+GGG - chr1_2:62791216-62791235 Msa0083670:intron 40.0%
ATTATGCCTCAAAACCCTTG+GGG - chr1_2:62791481-62791500 Msa0083670:CDS 40.0%
! GGATGGTTTGTGATGATGTT+GGG - chr1_2:62791503-62791522 Msa0083670:CDS 40.0%
! TGATGATGTTGGGATGCAAT+TGG - chr1_2:62791513-62791532 Msa0083670:CDS 40.0%
! AGTTTCTGAGGAATGTCTTC+AGG + chr1_2:62791593-62791612 None:intergenic 40.0%
! GGAACCCATTTTGTGAAAGG+TGG + chr1_2:62787100-62787119 None:intergenic 45.0%
! ACCGGAACCCATTTTGTGAA+AGG + chr1_2:62787103-62787122 None:intergenic 45.0%
ATGGGTTCCGGTCAGATTAA+CGG - chr1_2:62787111-62787130 Msa0083670:three_prime_UTR 45.0%
!! GTATGAAGTGTTGGTGTTGG+TGG - chr1_2:62787196-62787215 Msa0083670:three_prime_UTR 45.0%
! GGATCCATTGCTAGCTTCTA+TGG - chr1_2:62787297-62787316 Msa0083670:three_prime_UTR 45.0%
CCAACCATAGAAGCTAGCAA+TGG + chr1_2:62787304-62787323 None:intergenic 45.0%
! CCATTGCTAGCTTCTATGGT+TGG - chr1_2:62787301-62787320 Msa0083670:three_prime_UTR 45.0%
! TGTATCGAACGATGATAGCG+CGG - chr1_2:62787778-62787797 Msa0083670:CDS 45.0%
!! TGTGCATCTGTTTCTGATGC+TGG - chr1_2:62787830-62787849 Msa0083670:CDS 45.0%
!! TCCTTGTGTACCTTTTTGGC+TGG - chr1_2:62787983-62788002 Msa0083670:CDS 45.0%
!! GAATTTCTGGCCAGCCAAAA+AGG + chr1_2:62787996-62788015 None:intergenic 45.0%
GATGGCGCTAAAACTTCGAA+GGG + chr1_2:62788470-62788489 None:intergenic 45.0%
! TGATGGCGCTAAAACTTCGA+AGG + chr1_2:62788471-62788490 None:intergenic 45.0%
!! GAAGTTTTAGCGCCATCACT+TGG - chr1_2:62788473-62788492 Msa0083670:CDS 45.0%
CAGAGAAACAGTAGACCACT+TGG - chr1_2:62788528-62788547 Msa0083670:CDS 45.0%
ATCAGACTGCAGTGCTCAAT+AGG + chr1_2:62788680-62788699 None:intergenic 45.0%
! TTGAGGTGTCTTGAGTTCCT+AGG - chr1_2:62789243-62789262 Msa0083670:CDS 45.0%
!! ACAGGTAAAGAGTATCTCCC+TGG + chr1_2:62789329-62789348 None:intergenic 45.0%
! TCTCCTCTTTTACTCCCTTC+CGG + chr1_2:62789602-62789621 None:intergenic 45.0%
CATTGCACTTTCCTTTGCAG+TGG - chr1_2:62789639-62789658 Msa0083670:intron 45.0%
!!! CTTTTTGGCTCGGATCATAG+TGG - chr1_2:62789734-62789753 Msa0083670:intron 45.0%
AAAACGGGCAGTTGGAGATT+TGG - chr1_2:62789771-62789790 Msa0083670:intron 45.0%
TGGTACAGCAATTCACCTCT+CGG - chr1_2:62789791-62789810 Msa0083670:intron 45.0%
GGCAGGCCATTTAAATACGA+AGG - chr1_2:62789881-62789900 Msa0083670:intron 45.0%
AGGACTGTGGTGATACGTAT+GGG - chr1_2:62789924-62789943 Msa0083670:intron 45.0%
TAGCACCATTCCACGCATTT+CGG + chr1_2:62790042-62790061 None:intergenic 45.0%
!! TGGTGGTTGGATTGGTGTTA+TGG - chr1_2:62790096-62790115 Msa0083670:intron 45.0%
!! GGTTGGATTGGTGTTATGGA+TGG - chr1_2:62790100-62790119 Msa0083670:intron 45.0%
! TTCCTTCTGGAGACTCAATC+CGG - chr1_2:62790131-62790150 Msa0083670:intron 45.0%
AGCATAATGCTTGTGCTAGG+AGG - chr1_2:62790386-62790405 Msa0083670:intron 45.0%
GCATAATGCTTGTGCTAGGA+GGG - chr1_2:62790387-62790406 Msa0083670:intron 45.0%
! TTCTGTGTCTGAGATCGTTG+TGG - chr1_2:62790603-62790622 Msa0083670:intron 45.0%
ATCGTTGTGGTGTGGAACAA+GGG - chr1_2:62790616-62790635 Msa0083670:intron 45.0%
CTAGATCACTAACTTCCGGA+GGG + chr1_2:62790645-62790664 None:intergenic 45.0%
TCTAGATCACTAACTTCCGG+AGG + chr1_2:62790646-62790665 None:intergenic 45.0%
TGATCTAGATTCAGCGGTAC+CGG - chr1_2:62790657-62790676 Msa0083670:intron 45.0%
TAATGTCGTCATCGAGCTCA+AGG + chr1_2:62790759-62790778 None:intergenic 45.0%
! ACATGTGATGATGTTGAGCG+AGG - chr1_2:62790784-62790803 Msa0083670:intron 45.0%
TAGAATCCAACAATCCGGTC+AGG + chr1_2:62790832-62790851 None:intergenic 45.0%
TTCTATCCTCGGCTTATTGC+CGG - chr1_2:62790847-62790866 Msa0083670:CDS 45.0%
!! TCTGTACTTTAATGGGCTCC+CGG + chr1_2:62790869-62790888 None:intergenic 45.0%
!! CTAGCTTTCAAGAGGTACTG+GGG - chr1_2:62790961-62790980 Msa0083670:intron 45.0%
GATAATGCACCTTCGTGTTG+CGG + chr1_2:62791152-62791171 None:intergenic 45.0%
! GTCGAATCCCCATTTTCGAT+CGG + chr1_2:62791226-62791245 None:intergenic 45.0%
GAAAATGGGGATTCGACAGT+AGG - chr1_2:62791229-62791248 Msa0083670:intron 45.0%
TTATGCCTCAAAACCCTTGG+GGG - chr1_2:62791482-62791501 Msa0083670:CDS 45.0%
! GGGATGGTTTGTGATGATGT+TGG - chr1_2:62791502-62791521 Msa0083670:CDS 45.0%
!! GGGATGCAATTGGAAGCATT+AGG - chr1_2:62791523-62791542 Msa0083670:CDS 45.0%
GGAATAGAAGGATGGGCAAA+TGG - chr1_2:62791544-62791563 Msa0083670:CDS 45.0%
AGAGCCACCGCGTTACAAAT+GGG + chr1_2:62787069-62787088 None:intergenic 50.0%
TACACCGCCGTTAATCTGAC+CGG + chr1_2:62787121-62787140 None:intergenic 50.0%
GGCGGTTCTCATACCAACAA+CGG - chr1_2:62787144-62787163 Msa0083670:three_prime_UTR 50.0%
GGTTCTCATACCAACAACGG+TGG - chr1_2:62787147-62787166 Msa0083670:three_prime_UTR 50.0%
TCTCATACCAACAACGGTGG+TGG - chr1_2:62787150-62787169 Msa0083670:three_prime_UTR 50.0%
GTTACTACCACCACCGTTGT+TGG + chr1_2:62787160-62787179 None:intergenic 50.0%
ACAGATGCACAAGTCACCAC+AGG + chr1_2:62787821-62787840 None:intergenic 50.0%
! GCCAGCCAAAAAGGTACACA+AGG + chr1_2:62787987-62788006 None:intergenic 50.0%
GTACGGATAAGGGAGCAACA+TGG - chr1_2:62789403-62789422 Msa0083670:intron 50.0%
ATGCCGGAAGGGAGTAAAAG+AGG - chr1_2:62789596-62789615 Msa0083670:intron 50.0%
! GGCTCGGATCATAGTGGTTT+TGG - chr1_2:62789740-62789759 Msa0083670:intron 50.0%
CACCAAGAAAAACGGGCAGT+TGG - chr1_2:62789763-62789782 Msa0083670:intron 50.0%
!! CTCCAACTGCCCGTTTTTCT+TGG + chr1_2:62789768-62789787 None:intergenic 50.0%
CAGGACTGTGGTGATACGTA+TGG - chr1_2:62789923-62789942 Msa0083670:intron 50.0%
GTGGTGATACGTATGGGAGA+CGG - chr1_2:62789930-62789949 Msa0083670:intron 50.0%
TGGTGATACGTATGGGAGAC+GGG - chr1_2:62789931-62789950 Msa0083670:intron 50.0%
CAAACAAGAGCCGAAATGCG+TGG - chr1_2:62790029-62790048 Msa0083670:intron 50.0%
AAGAGCCGAAATGCGTGGAA+TGG - chr1_2:62790034-62790053 Msa0083670:intron 50.0%
GACGTTGGGCATCTAAGTGA+TGG + chr1_2:62790069-62790088 None:intergenic 50.0%
ACACCAATCCAACCACCAGA+CGG + chr1_2:62790094-62790113 None:intergenic 50.0%
! GTGCTATTGGGTGTGTTGCT+CGG - chr1_2:62790202-62790221 Msa0083670:intron 50.0%
CTCGGAGAAATGTTGGGACT+CGG + chr1_2:62790357-62790376 None:intergenic 50.0%
GGAGTTGGATTGATGTGCGT+AGG - chr1_2:62790436-62790455 Msa0083670:intron 50.0%
! TGTCTGAGATCGTTGTGGTG+TGG - chr1_2:62790608-62790627 Msa0083670:intron 50.0%
GATCGTTGTGGTGTGGAACA+AGG - chr1_2:62790615-62790634 Msa0083670:intron 50.0%
!! TAGATTCAGCGGTACCGGTA+AGG - chr1_2:62790662-62790681 Msa0083670:intron 50.0%
TCCTCTACCCTGATCCTTAC+CGG + chr1_2:62790679-62790698 None:intergenic 50.0%
CAACATCCTGACCGGATTGT+TGG - chr1_2:62790823-62790842 Msa0083670:CDS 50.0%
TCTATCCTCGGCTTATTGCC+GGG - chr1_2:62790848-62790867 Msa0083670:CDS 50.0%
GGGAGCCCATTAAAGTACAG+AGG - chr1_2:62790868-62790887 Msa0083670:CDS 50.0%
!! TTTCAAGAGGTACTGGGGAG+AGG - chr1_2:62790966-62790985 Msa0083670:intron 50.0%
AGAGGAAGCTAAGCAAGGGA+GGG - chr1_2:62790984-62791003 Msa0083670:intron 50.0%
GGATTCGACAGTAGGAGAGA+TGG - chr1_2:62791237-62791256 Msa0083670:intron 50.0%
TCGACAGTAGGAGAGATGGT+TGG - chr1_2:62791241-62791260 Msa0083670:intron 50.0%
CGACAGTAGGAGAGATGGTT+GGG - chr1_2:62791242-62791261 Msa0083670:intron 50.0%
CATCACAAACCATCCCCCAA+GGG + chr1_2:62791498-62791517 None:intergenic 50.0%
TCATCACAAACCATCCCCCA+AGG + chr1_2:62791499-62791518 None:intergenic 50.0%
CAGAGCCACCGCGTTACAAA+TGG + chr1_2:62787070-62787089 None:intergenic 55.0%
GGTTCCGGTCAGATTAACGG+CGG - chr1_2:62787114-62787133 Msa0083670:three_prime_UTR 55.0%
GGTCAGATTAACGGCGGTGT+AGG - chr1_2:62787120-62787139 Msa0083670:three_prime_UTR 55.0%
CAGATTAACGGCGGTGTAGG+CGG - chr1_2:62787123-62787142 Msa0083670:three_prime_UTR 55.0%
GTCACCACAGGATTCGCTAC+CGG + chr1_2:62787809-62787828 None:intergenic 55.0%
!! TATGGTGGGTGGGGTTAGTG+AGG - chr1_2:62788216-62788235 Msa0083670:CDS 55.0%
GGAGCAACATGGCAGCAACT+AGG - chr1_2:62789414-62789433 Msa0083670:intron 55.0%
GCAATTCACCTCTCGGTCCA+TGG - chr1_2:62789798-62789817 Msa0083670:intron 55.0%
TGAGGTTTCCATGGACCGAG+AGG + chr1_2:62789809-62789828 None:intergenic 55.0%
AAGAGCTTGGGAGCTCGCAA+TGG - chr1_2:62789857-62789876 Msa0083670:intron 55.0%
TACCGTATGGGTCAGGACTG+TGG - chr1_2:62789911-62789930 Msa0083670:intron 55.0%
CACCACAGTCCTGACCCATA+CGG + chr1_2:62789916-62789935 None:intergenic 55.0%
ACCACCAGACGGAAGACGTT+GGG + chr1_2:62790083-62790102 None:intergenic 55.0%
AACCACCAGACGGAAGACGT+TGG + chr1_2:62790084-62790103 None:intergenic 55.0%
AACGTCTTCCGTCTGGTGGT+TGG - chr1_2:62790083-62790102 Msa0083670:intron 55.0%
CTTCCGTCTGGTGGTTGGAT+TGG - chr1_2:62790088-62790107 Msa0083670:intron 55.0%
GATGGGGATCGTGTTCCTTC+TGG - chr1_2:62790118-62790137 Msa0083670:intron 55.0%
! CTTCTGGAGACTCAATCCGG+CGG - chr1_2:62790134-62790153 Msa0083670:intron 55.0%
AGACTCAATCCGGCGGTTCA+TGG - chr1_2:62790141-62790160 Msa0083670:intron 55.0%
TCAATCCGGCGGTTCATGGT+TGG - chr1_2:62790145-62790164 Msa0083670:intron 55.0%
CACAACCAACCATGAACCGC+CGG + chr1_2:62790153-62790172 None:intergenic 55.0%
! ATGTTGGGACTCGGTTCACG+CGG + chr1_2:62790348-62790367 None:intergenic 55.0%
CGAGTCCCAACATTTCTCCG+AGG - chr1_2:62790355-62790374 Msa0083670:intron 55.0%
GTGGAACAAGGGAATCCCTC+CGG - chr1_2:62790627-62790646 Msa0083670:intron 55.0%
!! AGCGGTACCGGTAAGGATCA+GGG - chr1_2:62790669-62790688 Msa0083670:intron 55.0%
ACCGGTAAGGATCAGGGTAG+AGG - chr1_2:62790675-62790694 Msa0083670:intron 55.0%
TCTGGCGTCAACATCCTGAC+CGG - chr1_2:62790815-62790834 Msa0083670:CDS 55.0%
TGGGGAGAGGAAGCTAAGCA+AGG - chr1_2:62790979-62790998 Msa0083670:intron 55.0%
GGGGAGAGGAAGCTAAGCAA+GGG - chr1_2:62790980-62790999 Msa0083670:intron 55.0%
GAGAGGAAGCTAAGCAAGGG+AGG - chr1_2:62790983-62791002 Msa0083670:intron 55.0%
AGCTAAGCAAGGGAGGGAAG+TGG - chr1_2:62790990-62791009 Msa0083670:intron 55.0%
TAAGCAAGGGAGGGAAGTGG+TGG - chr1_2:62790993-62791012 Msa0083670:intron 55.0%
!! GAAGTGTCGATAGCCCAAGC+CGG + chr1_2:62791105-62791124 None:intergenic 55.0%
! AGCGATTAGCCGCAACACGA+AGG - chr1_2:62791140-62791159 Msa0083670:intron 55.0%
! ACCATCCCCCAAGGGTTTTG+AGG + chr1_2:62791490-62791509 None:intergenic 55.0%
CGGGCGACCCATTTGTAACG+CGG - chr1_2:62787059-62787078 Msa0083670:three_prime_UTR 60.0%
GCGACCCATTTGTAACGCGG+TGG - chr1_2:62787062-62787081 Msa0083670:three_prime_UTR 60.0%
ATTAACGGCGGTGTAGGCGG+CGG - chr1_2:62787126-62787145 Msa0083670:three_prime_UTR 60.0%
! CGAACGATGATAGCGCGGCT+TGG - chr1_2:62787783-62787802 Msa0083670:CDS 60.0%
TTGGCCGGTAGCGAATCCTG+TGG - chr1_2:62787802-62787821 Msa0083670:CDS 60.0%
AGCTTGGGAGCTCGCAATGG+AGG - chr1_2:62789860-62789879 Msa0083670:intron 60.0%
GATGCCCAACGTCTTCCGTC+TGG - chr1_2:62790076-62790095 Msa0083670:intron 60.0%
CGCCGGATTGAGTCTCCAGA+AGG + chr1_2:62790136-62790155 None:intergenic 60.0%
! TGTTGGGACTCGGTTCACGC+GGG + chr1_2:62790347-62790366 None:intergenic 60.0%
TGACCTACGATGCTCGCCTG+TGG - chr1_2:62790542-62790561 Msa0083670:intron 60.0%
! GTTCCACAGGCGAGCATCGT+AGG + chr1_2:62790548-62790567 None:intergenic 60.0%
!! CAGCGGTACCGGTAAGGATC+AGG - chr1_2:62790668-62790687 Msa0083670:intron 60.0%
GTTGCGGCTAATCGCTGCAC+CGG + chr1_2:62791136-62791155 None:intergenic 60.0%
GCCTCAAAACCCTTGGGGGA+TGG - chr1_2:62791486-62791505 Msa0083670:CDS 60.0%
! CGATGATAGCGCGGCTTGGC+CGG - chr1_2:62787787-62787806 Msa0083670:CDS 65.0%
TGGGAGCTCGCAATGGAGGC+AGG - chr1_2:62789864-62789883 Msa0083670:intron 65.0%
GCCCAACGTCTTCCGTCTGG+TGG - chr1_2:62790079-62790098 Msa0083670:intron 65.0%
GGGCTCCCGGCAATAAGCCG+AGG + chr1_2:62790856-62790875 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 62786942 62791763 62786942 ID=Msa0083670;Name=Msa0083670
chr1_2 mRNA 62786942 62791763 62786942 ID=Msa0083670-mRNA-1;Parent=Msa0083670;Name=Msa0083670-mRNA-1;_AED=0.01;_eAED=0.01;_QI=169|1|1|1|1|1|4|491|771
chr1_2 exon 62786942 62789118 62786942 ID=Msa0083670-mRNA-1:exon:20991;Parent=Msa0083670-mRNA-1
chr1_2 exon 62789208 62789375 62789208 ID=Msa0083670-mRNA-1:exon:20990;Parent=Msa0083670-mRNA-1
chr1_2 exon 62790810 62790932 62790810 ID=Msa0083670-mRNA-1:exon:20989;Parent=Msa0083670-mRNA-1
chr1_2 exon 62791256 62791763 62791256 ID=Msa0083670-mRNA-1:exon:20988;Parent=Msa0083670-mRNA-1
chr1_2 five_prime_UTR 62791595 62791763 62791595 ID=Msa0083670-mRNA-1:five_prime_utr;Parent=Msa0083670-mRNA-1
chr1_2 CDS 62791256 62791594 62791256 ID=Msa0083670-mRNA-1:cds;Parent=Msa0083670-mRNA-1
chr1_2 CDS 62790810 62790932 62790810 ID=Msa0083670-mRNA-1:cds;Parent=Msa0083670-mRNA-1
chr1_2 CDS 62789208 62789375 62789208 ID=Msa0083670-mRNA-1:cds;Parent=Msa0083670-mRNA-1
chr1_2 CDS 62787433 62789118 62787433 ID=Msa0083670-mRNA-1:cds;Parent=Msa0083670-mRNA-1
chr1_2 three_prime_UTR 62786942 62787432 62786942 ID=Msa0083670-mRNA-1:three_prime_utr;Parent=Msa0083670-mRNA-1
Gene Sequence

>Msa0083670

ATGGGTTCCGGTCAGATTAACGGCGGTGTAGGCGGCGGTTCTCATACCAACAACGGTGGTGGTAGTAACAGTTGTTGTGATATGAGTATGAAGTGTTGGTGTTGGTGGAGATTAGAAAATCAACACTACTATAACCGTTTTTTCTCTTCTGGTTTCGTTTTCTTCTTTGCTTGTTTCCTTTTCTTTGGATCCATTGCTAGCTTCTATGGTTGGCTTTCTTTTTCTCCTTCTGTTCATGAATCTCTTTCCCCTTTTGGTTGTCATGATGACAATGAGGGTTCTTGGTCTATTGGAATTTTCTATGGTGATTCTCCTTTTTCTCTTAAACCCATTGAATTTTCGAATGTATCGAACGATGATAGCGCGGCTTGGCCGGTAGCGAATCCTGTGGTGACTTGTGCATCTGTTTCTGATGCTGGTTTTCCAAGTAATTTTGTTGCTGACCCTTTTCTTTTTATTCAGGGAGATACTCTTTACCTGTTCTATGAGACAAAGAATTCAATCACCATGCAAGGTGATATTGGAGTTTCAAAGAGTACGGATAAGGGAGCAACATGGCAGCAACTAGGAATTGCCTTGAATGAGGATTGGCATCTTTCTTATCCTTATGTATTTGAGCATAATGGCCAGATATATATGATGCCGGAAGGGAGTAAAAGAGGAGATCTTCGTCTGTACAGAGCATTGCACTTTCCTTTGCAGTGGAAATTGGAAAAAGTTCTCATAGAAAAGCCCCTTATTGATTCCTTTATCATTGACTATGATGGGAAGTATTGGCTTTTTGGCTCGGATCATAGTGGTTTTGGCACCAAGAAAAACGGGCAGTTGGAGATTTGGTACAGCAATTCACCTCTCGGTCCATGGAAACCTCACAAGAAAAACCCTATTTATAACATTGACAAGAGCTTGGGAGCTCGCAATGGAGGCAGGCCATTTAAATACGAAGGAAATCTTTACCGTATGGGTCAGGACTGTGGTGATACGTATGGGAGACGGGTGCGTGCTTTTCAGATAGAAACCCTTACAGCTGATGAATACAAAGAAATTGAAGTACCATTGGGCTTTGTTGAGTCAAACAAGAGCCGAAATGCGTGGAATGGTGCTAGATACCATCACTTAGATGCCCAACGTCTTCCGTCTGGTGGTTGGATTGGTGTTATGGATGGGGATCGTGTTCCTTCTGGAGACTCAATCCGGCGGTTCATGGTTGGTTGTGCTTCTGTTGCAGTCGCTGCTATACTCATTGTGCTATTGGGTGTGTTGCTCGGTTTTGTGAATTGTATTGTCCCTCTCAATTGGTTCATTCATAACTCTGGGAAGAGGAATCTAACTTCCTTGTCTTGGGAAAGACCAAATGCGTTCTCTTCAAAAGTAAGACGGTTCTGCACCCGCGTGAACCGAGTCCCAACATTTCTCCGAGGTAAGATAAAGCATAATGCTTGTGCTAGGAGGGTTATTCTTACTATAATCTTTGTAGCTGGAGTTGGATTGATGTGCGTAGGATTTAAAAATATTTATGGTGGTAATGGTTCAGAAGAACCTTATCCATTGAAAGGTCAATACTCGCAGTTCACGTTATTGACAATGACCTACGATGCTCGCCTGTGGAACTTGAAGATGTATGTGAAACATTACTCGAGATGCTCTTCTGTGTCTGAGATCGTTGTGGTGTGGAACAAGGGAATCCCTCCGGAAGTTAGTGATCTAGATTCAGCGGTACCGGTAAGGATCAGGGTAGAGGAGAAAAACTCTCTAAATAATCGATTCAAGGAAGACCCGTTGATAAAAACTCGAGCAGTCCTTGAGCTCGATGACGACATTATGATGACATGTGATGATGTTGAGCGAGGTTTTAATGTCTGGCGTCAACATCCTGACCGGATTGTTGGATTCTATCCTCGGCTTATTGCCGGGAGCCCATTAAAGTACAGAGGAGAAAAATATGCACGGACACATAAAGGCTACAACATGATACTTACCGGTGCAGCATTTATTGATTCAAAACTAGCTTTCAAGAGGTACTGGGGAGAGGAAGCTAAGCAAGGGAGGGAAGTGGTGGACAAGTTATTTAACTGTGAAGATGTGCTTTTGAATTACTTGTATGCAAATGCTAGTTCATCGTCAAGGACAGTTGATTATGTGAAACCGGCTTGGGCTATCGACACTTCAAAGTTTTCCGGTGCAGCGATTAGCCGCAACACGAAGGTGCATTATCAATTGAGAAGCAATTGTCTAATGAAATTTTCGGAGATGTATGGAAGTTTAGCCGATCGAAAATGGGGATTCGACAGTAGGAGAGATGGTTGGGATGTATAG
Protein sequence

>Msa0083670

MGSGQINGGVGGGSHTNNGGGSNSCCDMSMKCWCWWRLENQHYYNRFFSSGFVFFFACFLFFGSIASFYGWLSFSPSVHESLSPFGCHDDNEGSWSIGIFYGDSPFSLKPIEFSNVSNDDSAAWPVANPVVTCASVSDAGFPSNFVADPFLFIQGDTLYLFYETKNSITMQGDIGVSKSTDKGATWQQLGIALNEDWHLSYPYVFEHNGQIYMMPEGSKRGDLRLYRALHFPLQWKLEKVLIEKPLIDSFIIDYDGKYWLFGSDHSGFGTKKNGQLEIWYSNSPLGPWKPHKKNPIYNIDKSLGARNGGRPFKYEGNLYRMGQDCGDTYGRRVRAFQIETLTADEYKEIEVPLGFVESNKSRNAWNGARYHHLDAQRLPSGGWIGVMDGDRVPSGDSIRRFMVGCASVAVAAILIVLLGVLLGFVNCIVPLNWFIHNSGKRNLTSLSWERPNAFSSKVRRFCTRVNRVPTFLRGKIKHNACARRVILTIIFVAGVGLMCVGFKNIYGGNGSEEPYPLKGQYSQFTLLTMTYDARLWNLKMYVKHYSRCSSVSEIVVVWNKGIPPEVSDLDSAVPVRIRVEEKNSLNNRFKEDPLIKTRAVLELDDDIMMTCDDVERGFNVWRQHPDRIVGFYPRLIAGSPLKYRGEKYARTHKGYNMILTGAAFIDSKLAFKRYWGEEAKQGREVVDKLFNCEDVLLNYLYANASSSSRTVDYVKPAWAIDTSKFSGAAISRNTKVHYQLRSNCLMKFSEMYGSLADRKWGFDSRRDGWDV*