AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0035530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0035530 MtrunA17_Chr1g0197731 98.314 771 13 0 1 771 1 771 0.0 1578
Msa0035530 MtrunA17_Chr5g0436731 33.193 238 131 6 538 755 85 314 1.48e-28 117
Msa0035530 MtrunA17_Chr1g0147601 28.244 262 164 11 516 758 66 322 2.56e-14 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0035530 AT5G04500.1 61.425 744 275 5 39 771 23 765 0.0 973
Msa0035530 AT3G55830.1 31.298 262 145 7 517 755 67 316 1.13e-25 109
Msa0035530 AT1G80290.1 27.374 179 120 3 586 755 121 298 4.93e-13 71.6
Msa0035530 AT1G80290.2 27.374 179 120 3 586 755 129 306 6.13e-13 71.2

Find 238 sgRNAs with CRISPR-Local

Find 380 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGAATCTCTTTCCCCTTT+TGG 0.113758 1_1:-63762783 Msa0035530:CDS
CCAAACCACCTTTCAGAAAA+TGG 0.124745 1_1:-63763036 Msa0035530:exon
CTTTCCTTTGCAGTGGAAAT+TGG 0.156359 1_1:-63760461 Msa0035530:CDS
AGTAAGTTGAATACAAATTT+TGG 0.174225 1_1:-63758375 Msa0035530:three_prime_UTR
GGATCCATTGCTAGCTTCTA+TGG 0.216390 1_1:-63762831 Msa0035530:CDS
TGGTATTGTAAAAGTTATTT+TGG 0.227517 1_1:-63758403 Msa0035530:three_prime_UTR
TCAATGGGTTTAAGAGAAAA+AGG 0.241800 1_1:+63762705 None:intergenic
TTTCTCCTCTGTACTTTAAT+GGG 0.244050 1_1:+63759234 None:intergenic
TGCTATACTCATTGTGCTAT+TGG 0.258919 1_1:-63759918 Msa0035530:CDS
GGCTCGGATCATAGTGGTTT+TGG 0.264045 1_1:-63760367 Msa0035530:CDS
CTCTTGTCAATGTTATAAAT+AGG 0.265701 1_1:+63760268 None:intergenic
GAAGTTTAGCCGATCGAAAA+TGG 0.272899 1_1:-63758893 Msa0035530:CDS
ATGTCTACAACATGTAAATT+TGG 0.272904 1_1:-63758687 Msa0035530:three_prime_UTR
AGATTTCCTTCGTATTTAAA+TGG 0.276458 1_1:+63760220 None:intergenic
GATGGGGATCGTGTTCCTTC+TGG 0.287009 1_1:-63759989 Msa0035530:CDS
TTCTATCCTCGGCTTATTGC+CGG 0.292050 1_1:-63759260 Msa0035530:CDS
CCTTATGTATTTGAGCATAA+TGG 0.305640 1_1:-63760636 Msa0035530:CDS
TCTTGTCAATGTTATAAATA+GGG 0.323269 1_1:+63760269 None:intergenic
TCCTCTACCCTGATCCTTAC+CGG 0.325557 1_1:+63759431 None:intergenic
AGAAACTGTAATTCTGATTC+TGG 0.331959 1_1:-63758503 Msa0035530:three_prime_UTR
AAAACGGGCAGTTGGAGATT+TGG 0.333853 1_1:-63760336 Msa0035530:CDS
ATCACCATGCAAGGTGATAT+TGG 0.334120 1_1:-63760738 Msa0035530:CDS
AATGAGGGTTCTTGGTCTAT+TGG 0.334831 1_1:-63762747 Msa0035530:CDS
ATGTAAATTTGGTTCTATAA+TGG 0.341661 1_1:-63758676 Msa0035530:three_prime_UTR
TGGTGGTTGGATTGGTGTTA+TGG 0.341798 1_1:-63760011 Msa0035530:CDS
TGTGCATCTGTTTCTGATGC+TGG 0.345247 1_1:-63762290 Msa0035530:CDS
TCCTTTATCATTGACTATGA+TGG 0.346859 1_1:-63760406 Msa0035530:CDS
CAATGATAAAGGAATCAATA+AGG 0.348404 1_1:+63760416 None:intergenic
GGATGGTTTGTGATGATGTT+GGG 0.363890 1_1:-63758606 Msa0035530:three_prime_UTR
TGGGATGTATAGTATTAGTA+TGG 0.375704 1_1:-63758846 Msa0035530:exon
TATTGACCTTTCAACGGATA+AGG 0.379043 1_1:+63759611 None:intergenic
TAGCACCATTCCACGCATTT+CGG 0.380197 1_1:+63760068 None:intergenic
AACTAGCTTTCAAGAGGTAC+TGG 0.384132 1_1:-63759148 Msa0035530:CDS
CCCATCATAGTCAATGATAA+AGG 0.384298 1_1:+63760405 None:intergenic
CTTTGTATTCATCAGCTGTA+AGG 0.385106 1_1:+63760131 None:intergenic
GGAATCTAACTTCCTTGTCT+TGG 0.391386 1_1:-63759829 Msa0035530:CDS
CAGAGCCACCGCGTTACAAA+TGG 0.391850 1_1:+63763061 None:intergenic
CAGCGGTACCGGTAAGGATC+AGG 0.393458 1_1:-63759439 Msa0035530:CDS
GGGATGGTTTGTGATGATGT+TGG 0.393606 1_1:-63758607 Msa0035530:three_prime_UTR
GCTATACTCATTGTGCTATT+GGG 0.394366 1_1:-63759917 Msa0035530:CDS
ATTGTATTGTCCCTCTCAAT+TGG 0.397061 1_1:-63759874 Msa0035530:CDS
GAAACTGTAATTCTGATTCT+GGG 0.398249 1_1:-63758502 Msa0035530:three_prime_UTR
GGCTACAACATGATACTTAC+CGG 0.400952 1_1:-63759191 Msa0035530:CDS
AGACTCAATCCGGCGGTTCA+TGG 0.402151 1_1:-63759966 Msa0035530:CDS
AATTGGTTCATTCATAACTC+TGG 0.403047 1_1:-63759857 Msa0035530:CDS
AGAGAAACTTACAAATTCAA+TGG 0.403178 1_1:+63762689 None:intergenic
TTGGAAGCATTAGGAATAGA+AGG 0.405567 1_1:-63758577 Msa0035530:three_prime_UTR
CTCTCTAAATAATCGATTCA+AGG 0.406351 1_1:-63759402 Msa0035530:CDS
GAATCTAACTTCCTTGTCTT+GGG 0.411558 1_1:-63759828 Msa0035530:CDS
AAATATGCACGGACACATAA+AGG 0.414287 1_1:-63759212 Msa0035530:CDS
GACAGTTGATTATGTGAAAC+CGG 0.419715 1_1:-63759024 Msa0035530:CDS
AGTTTCTGAGGAATGTCTTC+AGG 0.420786 1_1:+63758519 None:intergenic
CAAACCACCTTTCAGAAAAT+GGG 0.420800 1_1:-63763035 Msa0035530:exon
CGATGATAGCGCGGCTTGGC+CGG 0.421476 1_1:-63762333 Msa0035530:CDS
ATAGTATTAGTATGGACTAA+TGG 0.424608 1_1:-63758838 Msa0035530:exon
ATAATCTTTGTAGCTGGAGT+TGG 0.425291 1_1:-63759686 Msa0035530:CDS
AATGATAAAGGAATCAATAA+GGG 0.426417 1_1:+63760417 None:intergenic
AATTCTTTGTCTCATAGAAC+AGG 0.427122 1_1:+63760763 None:intergenic
CAACATCCTGACCGGATTGT+TGG 0.428753 1_1:-63759284 Msa0035530:CDS
ATGGGTTCCGGTCAGATTAA+CGG 0.429979 1_1:-63763017 Msa0035530:CDS
ATCTTACCTCGGAGAAATGT+TGG 0.431402 1_1:+63759746 None:intergenic
AGTTTCAAAGAGTACGGATA+AGG 0.433171 1_1:-63760715 Msa0035530:CDS
GGAATAGAAGGATGGGCAAA+TGG 0.438464 1_1:-63758565 Msa0035530:three_prime_UTR
GGTTGGATTGGTGTTATGGA+TGG 0.439578 1_1:-63760007 Msa0035530:CDS
TGGGAGCTCGCAATGGAGGC+AGG 0.442449 1_1:-63760243 Msa0035530:CDS
GGATTGTTGGATTCTATCCT+CGG 0.443384 1_1:-63759271 Msa0035530:CDS
GTGCTATTGGGTGTGTTGCT+TGG 0.443919 1_1:-63759905 Msa0035530:CDS
AACGTCTTCCGTCTGGTGGT+TGG 0.445900 1_1:-63760024 Msa0035530:CDS
TTGATTATGTGAAACCGGCT+TGG 0.446271 1_1:-63759019 Msa0035530:CDS
CCATTGCTAGCTTCTATGGT+TGG 0.451469 1_1:-63762827 Msa0035530:CDS
CGACAGTAGGAGAGATGGTT+GGG 0.452982 1_1:-63758865 Msa0035530:CDS
TGATTATGTGAAACCGGCTT+GGG 0.453603 1_1:-63759018 Msa0035530:CDS
CTTACTATAATCTTTGTAGC+TGG 0.454212 1_1:-63759692 Msa0035530:CDS
TATAACATTGACAAGAGCTT+GGG 0.454360 1_1:-63760262 Msa0035530:CDS
CAAAGAAATTGAAGTACCAT+TGG 0.455009 1_1:-63760113 Msa0035530:CDS
ATGATGACAATGAGGGTTCT+TGG 0.455448 1_1:-63762755 Msa0035530:CDS
GAGAAACTTACAAATTCAAT+GGG 0.460045 1_1:+63762690 None:intergenic
AAGTTTAGCCGATCGAAAAT+GGG 0.461026 1_1:-63758892 Msa0035530:CDS
TCTATCCTCGGCTTATTGCC+GGG 0.461511 1_1:-63759259 Msa0035530:CDS
TCTTACCTCGGAGAAATGTT+GGG 0.461948 1_1:+63759747 None:intergenic
AATTATGCCTCAAAACCCTT+GGG 0.463371 1_1:-63758629 Msa0035530:three_prime_UTR
CTTCCGTCTGGTGGTTGGAT+TGG 0.464986 1_1:-63760019 Msa0035530:CDS
GTTGGATTGGTGTTATGGAT+GGG 0.465211 1_1:-63760006 Msa0035530:CDS
CTCGGAGAAATGTTGGGACT+CGG 0.469842 1_1:+63759753 None:intergenic
TTGGATTGGTGTTATGGATG+GGG 0.476704 1_1:-63760005 Msa0035530:CDS
CCTTTATCATTGACTATGAT+GGG 0.476834 1_1:-63760405 Msa0035530:CDS
AAAGAAATTGAAGTACCATT+GGG 0.480045 1_1:-63760112 Msa0035530:CDS
ACCACCAGACGGAAGACGTT+GGG 0.480499 1_1:+63760027 None:intergenic
CCATTATGCTCAAATACATA+AGG 0.483104 1_1:+63760636 None:intergenic
TTTGTATTCATCAGCTGTAA+GGG 0.484731 1_1:+63760132 None:intergenic
TTGACTATGATGGGAAGTAT+TGG 0.487593 1_1:-63760396 Msa0035530:CDS
ACCTTTCAGAAAATGGGTTC+CGG 0.488909 1_1:-63763029 Msa0035530:exon
AAATTATGCCTCAAAACCCT+TGG 0.489743 1_1:-63758630 Msa0035530:three_prime_UTR
GGGATGCAATTGGAAGCATT+AGG 0.490007 1_1:-63758586 Msa0035530:three_prime_UTR
TGATGATGTTGGGATGCAAT+TGG 0.491252 1_1:-63758596 Msa0035530:three_prime_UTR
AAGATGCCAATCCTCATTCA+AGG 0.491489 1_1:+63760665 None:intergenic
CGAAGGAAATCTTTACCGTA+TGG 0.492098 1_1:-63760209 Msa0035530:CDS
GATGCCCAACGTCTTCCGTC+TGG 0.493272 1_1:-63760031 Msa0035530:CDS
GAATCTAGATCACTAACTTC+CGG 0.493581 1_1:+63759461 None:intergenic
TGTCATCATGACAACCAAAA+GGG 0.495807 1_1:+63762769 None:intergenic
AAATCTTTACCGTATGGGTC+AGG 0.496835 1_1:-63760203 Msa0035530:CDS
TTATAACATTGACAAGAGCT+TGG 0.499394 1_1:-63760263 Msa0035530:CDS
GGTCAGATTAACGGCGGGGT+AGG 0.499775 1_1:-63763008 Msa0035530:CDS
CAGATTAACGGCGGGGTAGG+CGG 0.499877 1_1:-63763005 Msa0035530:CDS
TTGTCATCATGACAACCAAA+AGG 0.500668 1_1:+63762768 None:intergenic
ATTAACGGCGGGGTAGGCGG+CGG 0.501296 1_1:-63763002 Msa0035530:CDS
GCAATTCACCTCTCGGTCCA+TGG 0.502000 1_1:-63760309 Msa0035530:CDS
TGATCTAGATTCAGCGGTAC+CGG 0.505621 1_1:-63759450 Msa0035530:CDS
TTTCAAGAGGTACTGGGGAG+AGG 0.505985 1_1:-63759141 Msa0035530:CDS
TGAATCAATAAATGCTGCAC+CGG 0.512023 1_1:+63759172 None:intergenic
ATTGGTTCATTCATAACTCT+GGG 0.512978 1_1:-63759856 Msa0035530:CDS
GGGTCAGCAACAAAATTACT+TGG 0.515463 1_1:+63762263 None:intergenic
CAGGACTGTGGTGATACGTA+TGG 0.516883 1_1:-63760184 Msa0035530:CDS
ACCGGTAAGGATCAGGGTAG+AGG 0.518173 1_1:-63759432 Msa0035530:CDS
AGAGCCACCGCGTTACAAAT+GGG 0.519798 1_1:+63763062 None:intergenic
ACTAGGAATTGCCTTGAATG+AGG 0.521328 1_1:-63760676 Msa0035530:CDS
TAGCAATGGATCCAAAGAAA+AGG 0.521642 1_1:+63762841 None:intergenic
GTTTCAAAGAGTACGGATAA+GGG 0.523002 1_1:-63760714 Msa0035530:CDS
CATTGCACTTTCCTTTGCAG+TGG 0.523498 1_1:-63760468 Msa0035530:CDS
TATTGGAGTTTCAAAGAGTA+CGG 0.524365 1_1:-63760721 Msa0035530:CDS
TAGAATCCAACAATCCGGTC+AGG 0.527675 1_1:+63759278 None:intergenic
TGTATTTGAGCATAATGGCC+AGG 0.530888 1_1:-63760631 Msa0035530:intron
TTCCTTCTGGAGACTCAATC+CGG 0.531875 1_1:-63759976 Msa0035530:CDS
TAATGTCGTCATCGAGCTCA+AGG 0.532235 1_1:+63759351 None:intergenic
GAATTGCCTTGAATGAGGAT+TGG 0.533054 1_1:-63760671 Msa0035530:CDS
GAGAGGAAGCTAAGCAAGGG+AGG 0.533300 1_1:-63759124 Msa0035530:CDS
GATAATGCACCTTCGTGTTG+CGG 0.533746 1_1:+63758958 None:intergenic
TCTGTACTTTAATGGGCTCC+CGG 0.533855 1_1:+63759241 None:intergenic
GTGATATGAGTATGAAGTGT+TGG 0.534977 1_1:-63762941 Msa0035530:CDS
GAAAATGGGGATTCGACAGT+AGG 0.535860 1_1:-63758878 Msa0035530:CDS
GCATAATGCTTGTGCTAGGA+GGG 0.541579 1_1:-63759720 Msa0035530:CDS
CATTATGCTTTATCTTACCT+CGG 0.542422 1_1:+63759735 None:intergenic
TAGATTCAGCGGTACCGGTA+AGG 0.543691 1_1:-63759445 Msa0035530:CDS
AATCAGAATTACAGTTTCTG+AGG 0.544271 1_1:+63758507 None:intergenic
GAAGAACCTTATCCGTTGAA+AGG 0.544275 1_1:-63759617 Msa0035530:CDS
GAAAGAGATTCATGAACAGA+AGG 0.544334 1_1:+63762792 None:intergenic
TCGACAGTAGGAGAGATGGT+TGG 0.545034 1_1:-63758866 Msa0035530:CDS
ATTCAAAACTAGCTTTCAAG+AGG 0.546190 1_1:-63759154 Msa0035530:CDS
TCAATCCGGCGGTTCATGGT+TGG 0.548450 1_1:-63759962 Msa0035530:CDS
AGCTAAGCAAGGGAGGGAAG+TGG 0.548606 1_1:-63759117 Msa0035530:CDS
ACTAGCTTTCAAGAGGTACT+GGG 0.549497 1_1:-63759147 Msa0035530:CDS
TGAGTATGAAGTGTTGGTGT+AGG 0.549917 1_1:-63762935 Msa0035530:CDS
ATCACAGATATATATGATGC+CGG 0.552195 1_1:-63760527 Msa0035530:intron
GTCACCACAGGATTCGCTAC+CGG 0.553989 1_1:+63762314 None:intergenic
GCCCAACGTCTTCCGTCTGG+TGG 0.557248 1_1:-63760028 Msa0035530:CDS
TGGTACAGCAATTCACCTCT+CGG 0.557368 1_1:-63760316 Msa0035530:CDS
ATGCCGGAAGGGAGTAAAAG+AGG 0.559467 1_1:-63760511 Msa0035530:CDS
TGGTGATACGTATGGGAGAC+GGG 0.560756 1_1:-63760176 Msa0035530:CDS
GAGGATAGAATCCAACAATC+CGG 0.563211 1_1:+63759273 None:intergenic
AGCATAATGCTTGTGCTAGG+AGG 0.563853 1_1:-63759721 Msa0035530:CDS
TACCCCGCCGTTAATCTGAC+CGG 0.564408 1_1:+63763010 None:intergenic
TAAAGCATAATGCTTGTGCT+AGG 0.565788 1_1:-63759724 Msa0035530:CDS
TCATTCATAACTCTGGGAAG+AGG 0.566130 1_1:-63759850 Msa0035530:CDS
AAGCATTAGGAATAGAAGGA+TGG 0.570766 1_1:-63758573 Msa0035530:three_prime_UTR
CGAACGATGATAGCGCGGCT+TGG 0.572568 1_1:-63762337 Msa0035530:CDS
AAGAGCCGAAATGCGTGGAA+TGG 0.573439 1_1:-63760073 Msa0035530:CDS
GTTCCACAGGCGAGCATCGT+AGG 0.573695 1_1:+63759562 None:intergenic
AACTCCAATATCACCTTGCA+TGG 0.573916 1_1:+63760734 None:intergenic
CGTTCTCTTCAAAAGTAAGA+CGG 0.576152 1_1:-63759793 Msa0035530:CDS
GTTGCGGCTAATCGCTGCAC+CGG 0.576470 1_1:+63758974 None:intergenic
CACAACCAACCATGAACCGC+CGG 0.576997 1_1:+63759957 None:intergenic
GTGGAACAAGGGAATCCCTC+CGG 0.579260 1_1:-63759480 Msa0035530:CDS
AAGAATTCAATCACCATGCA+AGG 0.579369 1_1:-63760747 Msa0035530:CDS
AGCATTAGGAATAGAAGGAT+GGG 0.579569 1_1:-63758572 Msa0035530:three_prime_UTR
TGCGAGTATTGACCTTTCAA+CGG 0.580266 1_1:+63759605 None:intergenic
GGAGCAACATGGCAGCAACT+AGG 0.582780 1_1:-63760693 Msa0035530:CDS
GTATGAAGTGTTGGTGTAGG+TGG 0.583861 1_1:-63762932 Msa0035530:CDS
AAGAGCTTGGGAGCTCGCAA+TGG 0.585420 1_1:-63760250 Msa0035530:CDS
CATACATCTTCAAGTTCCAC+AGG 0.588362 1_1:+63759549 None:intergenic
CAGATATATATGATGCCGGA+AGG 0.589587 1_1:-63760523 Msa0035530:CDS
TGGGGAGAGGAAGCTAAGCA+AGG 0.590285 1_1:-63759128 Msa0035530:CDS
GTTCCGGTCAGATTAACGGC+GGG 0.590294 1_1:-63763013 Msa0035530:CDS
GATCGTTGTGGTGTGGAACA+AGG 0.592038 1_1:-63759492 Msa0035530:CDS
AGCTTGGGAGCTCGCAATGG+AGG 0.592698 1_1:-63760247 Msa0035530:CDS
GACGTTGGGCATCTAAGTGA+TGG 0.595031 1_1:+63760041 None:intergenic
TCTGGCGTCAACATCCTGAC+CGG 0.596046 1_1:-63759292 Msa0035530:CDS
AGGACTGTGGTGATACGTAT+GGG 0.601094 1_1:-63760183 Msa0035530:CDS
ATGATAAAGGAATCAATAAG+GGG 0.606565 1_1:+63760418 None:intergenic
GGGGAGAGGAAGCTAAGCAA+GGG 0.608405 1_1:-63759127 Msa0035530:CDS
GGCAGGCCATTTAAATACGA+AGG 0.608753 1_1:-63760226 Msa0035530:CDS
GGTTGTCATGATGACAATGA+GGG 0.609801 1_1:-63762762 Msa0035530:CDS
AGCGATTAGCCGCAACACGA+AGG 0.609845 1_1:-63758967 Msa0035530:CDS
AGCGGTACCGGTAAGGATCA+GGG 0.609885 1_1:-63759438 Msa0035530:CDS
TTATGCCTCAAAACCCTTGG+GGG 0.612517 1_1:-63758627 Msa0035530:three_prime_UTR
CGCCGGATTGAGTCTCCAGA+AGG 0.613527 1_1:+63759974 None:intergenic
TACCGTATGGGTCAGGACTG+TGG 0.613693 1_1:-63760196 Msa0035530:CDS
GAAGTGTCGATAGCCCAAGC+CGG 0.614580 1_1:+63759005 None:intergenic
GAAGGAAATCTTTACCGTAT+GGG 0.615740 1_1:-63760208 Msa0035530:CDS
TTCCGGTCAGATTAACGGCG+GGG 0.616814 1_1:-63763012 Msa0035530:CDS
ATGTTGGGACTCGGTTCACG+CGG 0.617024 1_1:+63759762 None:intergenic
ATTTGGTCTTTCCCAAGACA+AGG 0.619015 1_1:+63759817 None:intergenic
GTGGTGATACGTATGGGAGA+CGG 0.619253 1_1:-63760177 Msa0035530:CDS
TTCTGTGTCTGAGATCGTTG+TGG 0.621604 1_1:-63759504 Msa0035530:CDS
TGACCTACGATGCTCGCCTG+TGG 0.622217 1_1:-63759565 Msa0035530:CDS
TTGTATGAACTGTCAAATGC+TGG 0.624256 1_1:-63763088 Msa0035530:five_prime_UTR
GTCATCATGACAACCAAAAG+GGG 0.624661 1_1:+63762770 None:intergenic
GGATTCGACAGTAGGAGAGA+TGG 0.626958 1_1:-63758870 Msa0035530:CDS
AAACTGTAATTCTGATTCTG+GGG 0.627313 1_1:-63758501 Msa0035530:three_prime_UTR
AGATATATATGATGCCGGAA+GGG 0.631328 1_1:-63760522 Msa0035530:CDS
AACCACCAGACGGAAGACGT+TGG 0.631744 1_1:+63760026 None:intergenic
TATGAATGAACCAATTGAGA+GGG 0.632355 1_1:+63759864 None:intergenic
AGTTTAGCCGATCGAAAATG+GGG 0.632696 1_1:-63758891 Msa0035530:CDS
CAAACAAGAGCCGAAATGCG+TGG 0.635974 1_1:-63760078 Msa0035530:CDS
TGGTTGTCATGATGACAATG+AGG 0.636031 1_1:-63762763 Msa0035530:CDS
ACAGATGCACAAGTCACCAC+AGG 0.637261 1_1:+63762302 None:intergenic
AGAGGAAGCTAAGCAAGGGA+GGG 0.637342 1_1:-63759123 Msa0035530:CDS
CACCACAGTCCTGACCCATA+CGG 0.637381 1_1:+63760194 None:intergenic
ATTATGCCTCAAAACCCTTG+GGG 0.639024 1_1:-63758628 Msa0035530:three_prime_UTR
TCTCATACTAACAACGGTGG+TGG 0.643406 1_1:-63762978 Msa0035530:CDS
TAAGCAAGGGAGGGAAGTGG+TGG 0.643612 1_1:-63759114 Msa0035530:CDS
ATCGTTGTGGTGTGGAACAA+GGG 0.644387 1_1:-63759491 Msa0035530:CDS
TTATGAATGAACCAATTGAG+AGG 0.646864 1_1:+63759863 None:intergenic
TCTAGATCACTAACTTCCGG+AGG 0.648134 1_1:+63759464 None:intergenic
GCGACCCATTTGTAACGCGG+TGG 0.650964 1_1:-63763066 Msa0035530:five_prime_UTR
CTAGATCACTAACTTCCGGA+GGG 0.652302 1_1:+63759465 None:intergenic
CAAATGCTAGTTCATCGTCA+AGG 0.655114 1_1:-63759046 Msa0035530:CDS
GGAGTTGGATTGATGTGCGT+AGG 0.660500 1_1:-63759671 Msa0035530:CDS
AGTTAGTGATCTAGATTCAG+CGG 0.661489 1_1:-63759456 Msa0035530:CDS
CCAACCATAGAAGCTAGCAA+TGG 0.663121 1_1:+63762827 None:intergenic
TGTCTGAGATCGTTGTGGTG+TGG 0.663302 1_1:-63759499 Msa0035530:CDS
ACACCAATCCAACCACCAGA+CGG 0.667048 1_1:+63760016 None:intergenic
TTTGACTCAACAAAGCCCAA+TGG 0.669676 1_1:+63760097 None:intergenic
GGGCTCCCGGCAATAAGCCG+AGG 0.671052 1_1:+63759254 None:intergenic
TGAGGTTTCCATGGACCGAG+AGG 0.673472 1_1:+63760301 None:intergenic
GGCGGTTCTCATACTAACAA+CGG 0.677094 1_1:-63762984 Msa0035530:CDS
TGTTGGGACTCGGTTCACGC+GGG 0.677835 1_1:+63759763 None:intergenic
CTAGCTTTCAAGAGGTACTG+GGG 0.677896 1_1:-63759146 Msa0035530:CDS
CTGGCGACCCATTTGTAACG+CGG 0.684847 1_1:-63763069 Msa0035530:five_prime_UTR
CTTCTGGAGACTCAATCCGG+CGG 0.689338 1_1:-63759973 Msa0035530:CDS
TGTATCGAACGATGATAGCG+CGG 0.689557 1_1:-63762342 Msa0035530:CDS
ACATGTGATGATGTTGAGCG+AGG 0.706003 1_1:-63759323 Msa0035530:CDS
GCATTTGACAGTTCATACAA+CGG 0.707966 1_1:+63763091 None:intergenic
TTGGCCGGTAGCGAATCCTG+TGG 0.708560 1_1:-63762318 Msa0035530:CDS
GGGAGCCCATTAAAGTACAG+AGG 0.710310 1_1:-63759239 Msa0035530:CDS
GGTTCCGGTCAGATTAACGG+CGG 0.723354 1_1:-63763014 Msa0035530:CDS
GTACGGATAAGGGAGCAACA+TGG 0.724011 1_1:-63760704 Msa0035530:CDS
CGAGTCCCAACATTTCTCCG+AGG 0.734337 1_1:-63759752 Msa0035530:CDS
GGTTCTCATACTAACAACGG+TGG 0.740200 1_1:-63762981 Msa0035530:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAACAATATGTATATAAAAA+AGG + chr1_1:63759457-63759476 None:intergenic 10.0%
!! ATATAAAAAATAAAATACCT+AGG + chr1_1:63760711-63760730 None:intergenic 10.0%
!!! TAAATTTACTTTATTTTTCA+CGG + chr1_1:63760958-63760977 None:intergenic 10.0%
!! AAAATAAAAAAATCACAAAT+GGG + chr1_1:63762829-63762848 None:intergenic 10.0%
!! TAAAATAAAAAAATCACAAA+TGG + chr1_1:63762830-63762849 None:intergenic 10.0%
!! AAAGTAAAAGTAAATAATAC+AGG - chr1_1:63759997-63760016 Msa0035530:CDS 15.0%
!! AAGTAAAAGTAAATAATACA+GGG - chr1_1:63759998-63760017 Msa0035530:CDS 15.0%
!! GTAGGATTTAAAAATATTTA+TGG - chr1_1:63761902-63761921 Msa0035530:intron 15.0%
!!! TTGTGATTTTTTTATTTTAG+AGG - chr1_1:63762831-63762850 Msa0035530:CDS 15.0%
!!! TGTGATTTTTTTATTTTAGA+GGG - chr1_1:63762832-63762851 Msa0035530:CDS 15.0%
!!! GGTATTTGTTTTTATGATTT+TGG - chr1_1:63759125-63759144 Msa0035530:CDS 20.0%
!!! TTTTTATGATTTTGGTTTGA+GGG - chr1_1:63759133-63759152 Msa0035530:CDS 20.0%
!! TAACCTGAATAAAAAGAAAA+GGG + chr1_1:63759315-63759334 None:intergenic 20.0%
!! ATAAATGAGATGAAAGTTTA+TGG - chr1_1:63759633-63759652 Msa0035530:CDS 20.0%
!!! TGATAAAGATTCTGAAATTT+AGG - chr1_1:63759796-63759815 Msa0035530:CDS 20.0%
!! TATATCTATCTATGTATTGA+AGG - chr1_1:63759835-63759854 Msa0035530:CDS 20.0%
!! CAAAAAATTTAGTTGCAATA+GGG - chr1_1:63759865-63759884 Msa0035530:CDS 20.0%
!!! TGAAATTCTTTTCCAAATTT+AGG - chr1_1:63760210-63760229 Msa0035530:CDS 20.0%
!!! TCATTGTTTTCTCATTTTTT+TGG - chr1_1:63760469-63760488 Msa0035530:CDS 20.0%
!!! CATTGTTTTCTCATTTTTTT+GGG - chr1_1:63760470-63760489 Msa0035530:CDS 20.0%
!! AATGATAAAGGAATCAATAA+GGG + chr1_1:63761141-63761160 None:intergenic 20.0%
!! TCTTGTCAATGTTATAAATA+GGG + chr1_1:63761289-63761308 None:intergenic 20.0%
!! GGATTTAAAAATATTTATGG+TGG - chr1_1:63761905-63761924 Msa0035530:intron 20.0%
!! AAAAATATTTATGGTGGTAA+TGG - chr1_1:63761911-63761930 Msa0035530:intron 20.0%
!!! CAATTGTCTAATGAAATTTT+CGG - chr1_1:63762630-63762649 Msa0035530:intron 20.0%
!!! TATTTTGTTACATCTTTTGT+GGG - chr1_1:63762778-63762797 Msa0035530:CDS 20.0%
!!! ATGTAAATTTGGTTCTATAA+TGG - chr1_1:63762879-63762898 Msa0035530:CDS 20.0%
!!! TGGTATTGTAAAAGTTATTT+TGG - chr1_1:63763152-63763171 Msa0035530:five_prime_UTR 20.0%
!!! AGTAAGTTGAATACAAATTT+TGG - chr1_1:63763180-63763199 Msa0035530:five_prime_UTR 20.0%
! GAGAAACTTACAAATTCAAT+GGG + chr1_1:63758868-63758887 None:intergenic 25.0%
! AGAGAAACTTACAAATTCAA+TGG + chr1_1:63758869-63758888 None:intergenic 25.0%
!!! CATGATTCTGTTGATTTTTT+CGG - chr1_1:63758910-63758929 Msa0035530:CDS 25.0%
! AAATTCACAACACATAACAA+GGG + chr1_1:63759036-63759055 None:intergenic 25.0%
! AAAATTCACAACACATAACA+AGG + chr1_1:63759037-63759056 None:intergenic 25.0%
!!! GTTTTTATGATTTTGGTTTG+AGG - chr1_1:63759132-63759151 Msa0035530:CDS 25.0%
! CTAACCTGAATAAAAAGAAA+AGG + chr1_1:63759316-63759335 None:intergenic 25.0%
! TCTTTATTCCTTTGTATATC+TGG - chr1_1:63759353-63759372 Msa0035530:CDS 25.0%
! ATAAAAAAGGTGAGAATTTC+TGG + chr1_1:63759444-63759463 None:intergenic 25.0%
! ATCAAGCTTCAATTAATTGA+GGG + chr1_1:63759519-63759538 None:intergenic 25.0%
! TATCAAGCTTCAATTAATTG+AGG + chr1_1:63759520-63759539 None:intergenic 25.0%
! TCTGATTATGACATCATATA+TGG - chr1_1:63759610-63759629 Msa0035530:CDS 25.0%
! TTATGTTGTTCTTATCTACA+AGG - chr1_1:63759676-63759695 Msa0035530:CDS 25.0%
! CTTATAGCAAAATCATCAAT+TGG - chr1_1:63759745-63759764 Msa0035530:CDS 25.0%
!!! CCTATTGCAACTAAATTTTT+TGG + chr1_1:63759867-63759886 None:intergenic 25.0%
! CCAAAAAATTTAGTTGCAAT+AGG - chr1_1:63759864-63759883 Msa0035530:CDS 25.0%
! TTTCCTTTCTCAAACAAAAT+AGG + chr1_1:63760155-63760174 None:intergenic 25.0%
!! TTTTCCAAATTTAGGAACAA+AGG - chr1_1:63760218-63760237 Msa0035530:CDS 25.0%
! ATGATAAAGGAATCAATAAG+GGG + chr1_1:63761140-63761159 None:intergenic 25.0%
! CAATGATAAAGGAATCAATA+AGG + chr1_1:63761142-63761161 None:intergenic 25.0%
! CTCTTGTCAATGTTATAAAT+AGG + chr1_1:63761290-63761309 None:intergenic 25.0%
! AGATTTCCTTCGTATTTAAA+TGG + chr1_1:63761338-63761357 None:intergenic 25.0%
!! AAAGAAATTGAAGTACCATT+GGG - chr1_1:63761443-63761462 Msa0035530:intron 25.0%
!! ATAGTATTAGTATGGACTAA+TGG - chr1_1:63762717-63762736 Msa0035530:CDS 25.0%
!!! ATGGAGTGTTTTTTTTAGTT+AGG - chr1_1:63762736-63762755 Msa0035530:CDS 25.0%
!!! GTTTTTTTTAGTTAGGTCTT+TGG - chr1_1:63762743-63762762 Msa0035530:CDS 25.0%
!! GTATTTTGTTACATCTTTTG+TGG - chr1_1:63762777-63762796 Msa0035530:CDS 25.0%
! ATGTCTACAACATGTAAATT+TGG - chr1_1:63762868-63762887 Msa0035530:CDS 25.0%
!!! TCAATTGTTGCTTTTTTACT+TGG - chr1_1:63763080-63763099 Msa0035530:five_prime_UTR 25.0%
!!! CTTAGAAATTGATTTTGACT+TGG - chr1_1:63763128-63763147 Msa0035530:five_prime_UTR 25.0%
!!! TATAACCGTTTTTTCTCTTC+TGG - chr1_1:63758667-63758686 Msa0035530:three_prime_UTR 30.0%
! TTTGCTTGTTTCCTTTTCTT+TGG - chr1_1:63758703-63758722 Msa0035530:three_prime_UTR 30.0%
! TGGTCTATTGGAATTTTCTA+TGG - chr1_1:63758820-63758839 Msa0035530:three_prime_UTR 30.0%
! TCAATGGGTTTAAGAGAAAA+AGG + chr1_1:63758853-63758872 None:intergenic 30.0%
!! TGTGTTGTGAATTTTGATGT+TGG - chr1_1:63759042-63759061 Msa0035530:CDS 30.0%
!! GTGTTGTGAATTTTGATGTT+GGG - chr1_1:63759043-63759062 Msa0035530:CDS 30.0%
!! TGGATTTTGTGTTTGTTACA+TGG - chr1_1:63759157-63759176 Msa0035530:CDS 30.0%
! TGACCCTTTTCTTTTTATTC+AGG - chr1_1:63759309-63759328 Msa0035530:CDS 30.0%
TCAATTAATTGAGGGATTAG+TGG + chr1_1:63759511-63759530 None:intergenic 30.0%
CTTGATATGAGAATGTTACA+TGG - chr1_1:63759533-63759552 Msa0035530:CDS 30.0%
AATGAGATGAAAGTTTATGG+TGG - chr1_1:63759636-63759655 Msa0035530:CDS 30.0%
ATGAGATGAAAGTTTATGGT+GGG - chr1_1:63759637-63759656 Msa0035530:CDS 30.0%
CAAGGTTATTCTTAACTACA+AGG - chr1_1:63759694-63759713 Msa0035530:CDS 30.0%
!!! ATCAATTGGTTTTACTGCTA+AGG - chr1_1:63759759-63759778 Msa0035530:CDS 30.0%
GTTATTTATCAACCAAGTGA+TGG + chr1_1:63759920-63759939 None:intergenic 30.0%
!! TCACTTGGTTGATAAATAAC+CGG - chr1_1:63759920-63759939 Msa0035530:CDS 30.0%
TGTATACAGAAAAAAGTAGC+CGG + chr1_1:63759942-63759961 None:intergenic 30.0%
!!! AGTCTGATTTTTTCTTCCTT+TGG - chr1_1:63760124-63760143 Msa0035530:CDS 30.0%
CTTTCTCAAACAAAATAGGA+TGG + chr1_1:63760151-63760170 None:intergenic 30.0%
!! CATCCTATTTTGTTTGAGAA+AGG - chr1_1:63760149-63760168 Msa0035530:CDS 30.0%
TTCACCTTTGTTCCTAAATT+TGG + chr1_1:63760225-63760244 None:intergenic 30.0%
AAGGTGAATCAGTATTCATA+AGG - chr1_1:63760237-63760256 Msa0035530:CDS 30.0%
!! AATTGCACTGTTTTTCTAGA+AGG - chr1_1:63760269-63760288 Msa0035530:CDS 30.0%
! AGTGGTCATTTAAAGTGTTT+AGG - chr1_1:63760308-63760327 Msa0035530:CDS 30.0%
! AAAGTGTTTAGGATCTGTAT+TGG - chr1_1:63760319-63760338 Msa0035530:CDS 30.0%
! TTTTATCAGAACATGTTTGC+AGG + chr1_1:63760361-63760380 None:intergenic 30.0%
AGAAAACAATGAAGCAAAAG+AGG + chr1_1:63760461-63760480 None:intergenic 30.0%
!!! ACTGATGTTTTGACTTAGTT+TGG + chr1_1:63760517-63760536 None:intergenic 30.0%
ACATGAACATGAACATCTAT+AGG + chr1_1:63760586-63760605 None:intergenic 30.0%
ACTCGTTAATCACATTATTG+AGG - chr1_1:63760674-63760693 Msa0035530:CDS 30.0%
TAATGTCAATATGAGTGAAC+AGG + chr1_1:63760750-63760769 None:intergenic 30.0%
TCATATTGACATTACAATCC+AGG - chr1_1:63760756-63760775 Msa0035530:CDS 30.0%
CATATTGACATTACAATCCA+GGG - chr1_1:63760757-63760776 Msa0035530:CDS 30.0%
AATTCTTTGTCTCATAGAAC+AGG + chr1_1:63760795-63760814 None:intergenic 30.0%
TATTGGAGTTTCAAAGAGTA+CGG - chr1_1:63760834-63760853 Msa0035530:intron 30.0%
CCATTATGCTCAAATACATA+AGG + chr1_1:63760922-63760941 None:intergenic 30.0%
CCTTATGTATTTGAGCATAA+TGG - chr1_1:63760919-63760938 Msa0035530:intron 30.0%
ATCACAGATATATATGATGC+CGG - chr1_1:63761028-63761047 Msa0035530:intron 30.0%
! TCCTTTATCATTGACTATGA+TGG - chr1_1:63761149-63761168 Msa0035530:intron 30.0%
! CCTTTATCATTGACTATGAT+GGG - chr1_1:63761150-63761169 Msa0035530:intron 30.0%
! TAAATAGGGTTTTTCTTGTG+AGG + chr1_1:63761275-63761294 None:intergenic 30.0%
TTATAACATTGACAAGAGCT+TGG - chr1_1:63761292-63761311 Msa0035530:intron 30.0%
TATAACATTGACAAGAGCTT+GGG - chr1_1:63761293-63761312 Msa0035530:intron 30.0%
TTTGTATTCATCAGCTGTAA+GGG + chr1_1:63761426-63761445 None:intergenic 30.0%
! CAAAGAAATTGAAGTACCAT+TGG - chr1_1:63761442-63761461 Msa0035530:intron 30.0%
TATGAATGAACCAATTGAGA+GGG + chr1_1:63761694-63761713 None:intergenic 30.0%
TTATGAATGAACCAATTGAG+AGG + chr1_1:63761695-63761714 None:intergenic 30.0%
! AATTGGTTCATTCATAACTC+TGG - chr1_1:63761698-63761717 Msa0035530:intron 30.0%
! ATTGGTTCATTCATAACTCT+GGG - chr1_1:63761699-63761718 Msa0035530:intron 30.0%
CATTATGCTTTATCTTACCT+CGG + chr1_1:63761823-63761842 None:intergenic 30.0%
CTTACTATAATCTTTGTAGC+TGG - chr1_1:63761863-63761882 Msa0035530:intron 30.0%
! CTCTCTAAATAATCGATTCA+AGG - chr1_1:63762153-63762172 Msa0035530:intron 30.0%
TTTCTCCTCTGTACTTTAAT+GGG + chr1_1:63762324-63762343 None:intergenic 30.0%
! TTTTCTCCTCTGTACTTTAA+TGG + chr1_1:63762325-63762344 None:intergenic 30.0%
!! ATTCAAAACTAGCTTTCAAG+AGG - chr1_1:63762401-63762420 Msa0035530:intron 30.0%
! ATGAAATTTTCGGAGATGTA+TGG - chr1_1:63762640-63762659 Msa0035530:intron 30.0%
TGGGATGTATAGTATTAGTA+TGG - chr1_1:63762709-63762728 Msa0035530:CDS 30.0%
!!! TTTTTTAGTTAGGTCTTTGG+TGG - chr1_1:63762746-63762765 Msa0035530:CDS 30.0%
AATCAGAATTACAGTTTCTG+AGG + chr1_1:63763051-63763070 None:intergenic 30.0%
AGAAACTGTAATTCTGATTC+TGG - chr1_1:63763052-63763071 Msa0035530:five_prime_UTR 30.0%
GAAACTGTAATTCTGATTCT+GGG - chr1_1:63763053-63763072 Msa0035530:five_prime_UTR 30.0%
AAACTGTAATTCTGATTCTG+GGG - chr1_1:63763054-63763073 Msa0035530:five_prime_UTR 30.0%
!!! GAAATTGATTTTGACTTGGT+TGG - chr1_1:63763132-63763151 Msa0035530:five_prime_UTR 30.0%
!! CTCTCTAGGAATTTTGACAA+AGG + chr1_1:63758407-63758426 None:intergenic 35.0%
GCATTTGACAGTTCATACAA+CGG + chr1_1:63758467-63758486 None:intergenic 35.0%
TTGTATGAACTGTCAAATGC+TGG - chr1_1:63758467-63758486 Msa0035530:three_prime_UTR 35.0%
!! CATTTTCTGAAAGGTGGTTT+GGG + chr1_1:63758521-63758540 None:intergenic 35.0%
CAAACCACCTTTCAGAAAAT+GGG - chr1_1:63758520-63758539 Msa0035530:three_prime_UTR 35.0%
GTGATATGAGTATGAAGTGT+TGG - chr1_1:63758614-63758633 Msa0035530:three_prime_UTR 35.0%
CGAAACCAGAAGAGAAAAAA+CGG + chr1_1:63758675-63758694 None:intergenic 35.0%
TAGCAATGGATCCAAAGAAA+AGG + chr1_1:63758717-63758736 None:intergenic 35.0%
GAAAGAGATTCATGAACAGA+AGG + chr1_1:63758766-63758785 None:intergenic 35.0%
TGTCATCATGACAACCAAAA+GGG + chr1_1:63758789-63758808 None:intergenic 35.0%
TTGTCATCATGACAACCAAA+AGG + chr1_1:63758790-63758809 None:intergenic 35.0%
!! GAATTTTGATGTTGGGTGTT+TGG - chr1_1:63759050-63759069 Msa0035530:CDS 35.0%
!!! TATGATTTTGGTTTGAGGGA+TGG - chr1_1:63759137-63759156 Msa0035530:CDS 35.0%
TTGTTACATGGAAGTGATGA+TGG - chr1_1:63759169-63759188 Msa0035530:CDS 35.0%
AAAGCACACCAGATATACAA+AGG + chr1_1:63759364-63759383 None:intergenic 35.0%
TTTGTATATCTGGTGTGCTT+TGG - chr1_1:63759363-63759382 Msa0035530:CDS 35.0%
! TTGTTCCTTGTGTACCTTTT+TGG - chr1_1:63759414-63759433 Msa0035530:CDS 35.0%
TTCATTGCCAAGTCAATGTT+TGG - chr1_1:63759479-63759498 Msa0035530:CDS 35.0%
! GTTGTATCCAAACATTGACT+TGG + chr1_1:63759489-63759508 None:intergenic 35.0%
CATAGATAGATATACGTGAG+TGG + chr1_1:63759829-63759848 None:intergenic 35.0%
TTACAACACAAACAACCAAG+TGG + chr1_1:63759978-63759997 None:intergenic 35.0%
AACAAAATAGGATGGTCCAA+AGG + chr1_1:63760143-63760162 None:intergenic 35.0%
GGATTAACAGTTATGTACAG+TGG - chr1_1:63760290-63760309 Msa0035530:CDS 35.0%
AGGATCTGTATTGGAGAATA+AGG - chr1_1:63760328-63760347 Msa0035530:CDS 35.0%
AAGAATTCAATCACCATGCA+AGG - chr1_1:63760808-63760827 Msa0035530:intron 35.0%
! AGTTTCAAAGAGTACGGATA+AGG - chr1_1:63760840-63760859 Msa0035530:intron 35.0%
! GTTTCAAAGAGTACGGATAA+GGG - chr1_1:63760841-63760860 Msa0035530:intron 35.0%
! TTTTTCACGGAAACAATACC+TGG + chr1_1:63760945-63760964 None:intergenic 35.0%
AGATATATATGATGCCGGAA+GGG - chr1_1:63761033-63761052 Msa0035530:intron 35.0%
! TTTTCCAATTTCCACTGCAA+AGG + chr1_1:63761101-63761120 None:intergenic 35.0%
CCCATCATAGTCAATGATAA+AGG + chr1_1:63761153-63761172 None:intergenic 35.0%
! TTGACTATGATGGGAAGTAT+TGG - chr1_1:63761159-63761178 Msa0035530:intron 35.0%
! TTTTTCTTGTGAGGTTTCCA+TGG + chr1_1:63761266-63761285 None:intergenic 35.0%
GAAGGAAATCTTTACCGTAT+GGG - chr1_1:63761347-63761366 Msa0035530:intron 35.0%
CTTTGTATTCATCAGCTGTA+AGG + chr1_1:63761427-63761446 None:intergenic 35.0%
TGCTATACTCATTGTGCTAT+TGG - chr1_1:63761637-63761656 Msa0035530:intron 35.0%
! GCTATACTCATTGTGCTATT+GGG - chr1_1:63761638-63761657 Msa0035530:intron 35.0%
ATTGTATTGTCCCTCTCAAT+TGG - chr1_1:63761681-63761700 Msa0035530:intron 35.0%
GAATCTAACTTCCTTGTCTT+GGG - chr1_1:63761727-63761746 Msa0035530:intron 35.0%
!! ACTTTTGAAGAGAACGCATT+TGG + chr1_1:63761758-63761777 None:intergenic 35.0%
CGTTCTCTTCAAAAGTAAGA+CGG - chr1_1:63761762-63761781 Msa0035530:intron 35.0%
TAAAGCATAATGCTTGTGCT+AGG - chr1_1:63761831-63761850 Msa0035530:intron 35.0%
ATAATCTTTGTAGCTGGAGT+TGG - chr1_1:63761869-63761888 Msa0035530:intron 35.0%
TATTGACCTTTCAACGGATA+AGG + chr1_1:63761947-63761966 None:intergenic 35.0%
GAATCTAGATCACTAACTTC+CGG + chr1_1:63762097-63762116 None:intergenic 35.0%
AGTTAGTGATCTAGATTCAG+CGG - chr1_1:63762099-63762118 Msa0035530:intron 35.0%
! ACTGCTCGAGTTTTTATCAA+CGG + chr1_1:63762184-63762203 None:intergenic 35.0%
ACAGAGGAGAAAAATATGCA+CGG - chr1_1:63762332-63762351 Msa0035530:CDS 35.0%
AAATATGCACGGACACATAA+AGG - chr1_1:63762343-63762362 Msa0035530:CDS 35.0%
TGAATCAATAAATGCTGCAC+CGG + chr1_1:63762386-63762405 None:intergenic 35.0%
GACAGTTGATTATGTGAAAC+CGG - chr1_1:63762531-63762550 Msa0035530:intron 35.0%
! ATCGACACTTCAAAGTTTTC+CGG - chr1_1:63762562-63762581 Msa0035530:intron 35.0%
AAGTTTAGCCGATCGAAAAT+GGG - chr1_1:63762663-63762682 Msa0035530:intron 35.0%
AAATTATGCCTCAAAACCCT+TGG - chr1_1:63762925-63762944 Msa0035530:CDS 35.0%
AATTATGCCTCAAAACCCTT+GGG - chr1_1:63762926-63762945 Msa0035530:CDS 35.0%
!! TTGGAAGCATTAGGAATAGA+AGG - chr1_1:63762978-63762997 Msa0035530:CDS 35.0%
AAGCATTAGGAATAGAAGGA+TGG - chr1_1:63762982-63763001 Msa0035530:CDS 35.0%
AGCATTAGGAATAGAAGGAT+GGG - chr1_1:63762983-63763002 Msa0035530:CDS 35.0%
!!! GTTTTTGAGTCTCTCTCTCT+AGG + chr1_1:63758421-63758440 None:intergenic 40.0%
!! CCATTTTCTGAAAGGTGGTT+TGG + chr1_1:63758522-63758541 None:intergenic 40.0%
CCAAACCACCTTTCAGAAAA+TGG - chr1_1:63758519-63758538 Msa0035530:three_prime_UTR 40.0%
! ACCTTTCAGAAAATGGGTTC+CGG - chr1_1:63758526-63758545 Msa0035530:three_prime_UTR 40.0%
!! TGAGTATGAAGTGTTGGTGT+AGG - chr1_1:63758620-63758639 Msa0035530:three_prime_UTR 40.0%
! CATGAATCTCTTTCCCCTTT+TGG - chr1_1:63758772-63758791 Msa0035530:three_prime_UTR 40.0%
GTCATCATGACAACCAAAAG+GGG + chr1_1:63758788-63758807 None:intergenic 40.0%
TGGTTGTCATGATGACAATG+AGG - chr1_1:63758792-63758811 Msa0035530:three_prime_UTR 40.0%
GGTTGTCATGATGACAATGA+GGG - chr1_1:63758793-63758812 Msa0035530:three_prime_UTR 40.0%
ATGATGACAATGAGGGTTCT+TGG - chr1_1:63758800-63758819 Msa0035530:three_prime_UTR 40.0%
AATGAGGGTTCTTGGTCTAT+TGG - chr1_1:63758808-63758827 Msa0035530:three_prime_UTR 40.0%
GGGTCAGCAACAAAATTACT+TGG + chr1_1:63759295-63759314 None:intergenic 40.0%
! AGATGAAAGTTTATGGTGGG+TGG - chr1_1:63759640-63759659 Msa0035530:CDS 40.0%
!! GATGAAAGTTTATGGTGGGT+GGG - chr1_1:63759641-63759660 Msa0035530:CDS 40.0%
!! ATGAAAGTTTATGGTGGGTG+GGG - chr1_1:63759642-63759661 Msa0035530:CDS 40.0%
CAAAGAAACAGTAGACCACT+TGG - chr1_1:63759960-63759979 Msa0035530:CDS 40.0%
AGTAGCTCTTAGCATCACTA+AGG - chr1_1:63760534-63760553 Msa0035530:intron 40.0%
TAGCATCACTAAGGCTGAAA+AGG - chr1_1:63760543-63760562 Msa0035530:intron 40.0%
ATCACCATGCAAGGTGATAT+TGG - chr1_1:63760817-63760836 Msa0035530:intron 40.0%
AACTCCAATATCACCTTGCA+TGG + chr1_1:63760824-63760843 None:intergenic 40.0%
ACTAGGAATTGCCTTGAATG+AGG - chr1_1:63760879-63760898 Msa0035530:intron 40.0%
GAATTGCCTTGAATGAGGAT+TGG - chr1_1:63760884-63760903 Msa0035530:intron 40.0%
AAGATGCCAATCCTCATTCA+AGG + chr1_1:63760893-63760912 None:intergenic 40.0%
TGTATTTGAGCATAATGGCC+AGG - chr1_1:63760924-63760943 Msa0035530:intron 40.0%
CAGATATATATGATGCCGGA+AGG - chr1_1:63761032-63761051 Msa0035530:intron 40.0%
CTTTCCTTTGCAGTGGAAAT+TGG - chr1_1:63761094-63761113 Msa0035530:intron 40.0%
!!! GATGGGAAGTATTGGCTTTT+TGG - chr1_1:63761167-63761186 Msa0035530:intron 40.0%
!!! GAAGTATTGGCTTTTTGGCT+CGG - chr1_1:63761172-63761191 Msa0035530:intron 40.0%
!! GGTTTTGGCACCAAGAAAAA+CGG - chr1_1:63761203-63761222 Msa0035530:intron 40.0%
!! GTTTTGGCACCAAGAAAAAC+GGG - chr1_1:63761204-63761223 Msa0035530:intron 40.0%
CGAAGGAAATCTTTACCGTA+TGG - chr1_1:63761346-63761365 Msa0035530:intron 40.0%
AAATCTTTACCGTATGGGTC+AGG - chr1_1:63761352-63761371 Msa0035530:intron 40.0%
TTTGACTCAACAAAGCCCAA+TGG + chr1_1:63761461-63761480 None:intergenic 40.0%
!! GTTGGATTGGTGTTATGGAT+GGG - chr1_1:63761549-63761568 Msa0035530:intron 40.0%
!! TTGGATTGGTGTTATGGATG+GGG - chr1_1:63761550-63761569 Msa0035530:intron 40.0%
! TCATTCATAACTCTGGGAAG+AGG - chr1_1:63761705-63761724 Msa0035530:intron 40.0%
GGAATCTAACTTCCTTGTCT+TGG - chr1_1:63761726-63761745 Msa0035530:intron 40.0%
! ATTTGGTCTTTCCCAAGACA+AGG + chr1_1:63761741-63761760 None:intergenic 40.0%
TCTTACCTCGGAGAAATGTT+GGG + chr1_1:63761811-63761830 None:intergenic 40.0%
ATCTTACCTCGGAGAAATGT+TGG + chr1_1:63761812-63761831 None:intergenic 40.0%
GAAGAACCTTATCCGTTGAA+AGG - chr1_1:63761938-63761957 Msa0035530:intron 40.0%
!! TGCGAGTATTGACCTTTCAA+CGG + chr1_1:63761953-63761972 None:intergenic 40.0%
! CATACATCTTCAAGTTCCAC+AGG + chr1_1:63762009-63762028 None:intergenic 40.0%
! CTGCTCGAGTTTTTATCAAC+GGG + chr1_1:63762183-63762202 None:intergenic 40.0%
!! TTGAGCGAGGTTTTAATGTC+TGG - chr1_1:63762245-63762264 Msa0035530:intron 40.0%
GAGGATAGAATCCAACAATC+CGG + chr1_1:63762285-63762304 None:intergenic 40.0%
GGATTGTTGGATTCTATCCT+CGG - chr1_1:63762284-63762303 Msa0035530:CDS 40.0%
GGCTACAACATGATACTTAC+CGG - chr1_1:63762364-63762383 Msa0035530:intron 40.0%
!! AACTAGCTTTCAAGAGGTAC+TGG - chr1_1:63762407-63762426 Msa0035530:intron 40.0%
!! ACTAGCTTTCAAGAGGTACT+GGG - chr1_1:63762408-63762427 Msa0035530:intron 40.0%
CAAATGCTAGTTCATCGTCA+AGG - chr1_1:63762509-63762528 Msa0035530:intron 40.0%
TTGATTATGTGAAACCGGCT+TGG - chr1_1:63762536-63762555 Msa0035530:intron 40.0%
! TGATTATGTGAAACCGGCTT+GGG - chr1_1:63762537-63762556 Msa0035530:intron 40.0%
GAAGTTTAGCCGATCGAAAA+TGG - chr1_1:63762662-63762681 Msa0035530:intron 40.0%
AGTTTAGCCGATCGAAAATG+GGG - chr1_1:63762664-63762683 Msa0035530:intron 40.0%
ATTATGCCTCAAAACCCTTG+GGG - chr1_1:63762927-63762946 Msa0035530:CDS 40.0%
! GGATGGTTTGTGATGATGTT+GGG - chr1_1:63762949-63762968 Msa0035530:CDS 40.0%
! TGATGATGTTGGGATGCAAT+TGG - chr1_1:63762959-63762978 Msa0035530:CDS 40.0%
! AGTTTCTGAGGAATGTCTTC+AGG + chr1_1:63763039-63763058 None:intergenic 40.0%
!! GGAACCCATTTTCTGAAAGG+TGG + chr1_1:63758527-63758546 None:intergenic 45.0%
! ACCGGAACCCATTTTCTGAA+AGG + chr1_1:63758530-63758549 None:intergenic 45.0%
ATGGGTTCCGGTCAGATTAA+CGG - chr1_1:63758538-63758557 Msa0035530:three_prime_UTR 45.0%
GGCGGTTCTCATACTAACAA+CGG - chr1_1:63758571-63758590 Msa0035530:three_prime_UTR 45.0%
GGTTCTCATACTAACAACGG+TGG - chr1_1:63758574-63758593 Msa0035530:three_prime_UTR 45.0%
TCTCATACTAACAACGGTGG+TGG - chr1_1:63758577-63758596 Msa0035530:three_prime_UTR 45.0%
!! GTATGAAGTGTTGGTGTAGG+TGG - chr1_1:63758623-63758642 Msa0035530:three_prime_UTR 45.0%
! GGATCCATTGCTAGCTTCTA+TGG - chr1_1:63758724-63758743 Msa0035530:three_prime_UTR 45.0%
CCAACCATAGAAGCTAGCAA+TGG + chr1_1:63758731-63758750 None:intergenic 45.0%
! CCATTGCTAGCTTCTATGGT+TGG - chr1_1:63758728-63758747 Msa0035530:three_prime_UTR 45.0%
! TGTATCGAACGATGATAGCG+CGG - chr1_1:63759213-63759232 Msa0035530:CDS 45.0%
!! TGTGCATCTGTTTCTGATGC+TGG - chr1_1:63759265-63759284 Msa0035530:CDS 45.0%
!! TCCTTGTGTACCTTTTTGGC+TGG - chr1_1:63759418-63759437 Msa0035530:CDS 45.0%
!! GAATTTCTGGCCAGCCAAAA+AGG + chr1_1:63759431-63759450 None:intergenic 45.0%
GATGGCGCTAAAACTTCGAA+GGG + chr1_1:63759902-63759921 None:intergenic 45.0%
! TGATGGCGCTAAAACTTCGA+AGG + chr1_1:63759903-63759922 None:intergenic 45.0%
!! GAAGTTTTAGCGCCATCACT+TGG - chr1_1:63759905-63759924 Msa0035530:CDS 45.0%
ATCAGACTGCAGTGCTCAAT+AGG + chr1_1:63760112-63760131 None:intergenic 45.0%
!! ACAGGTAAAGAGTATCTCCC+TGG + chr1_1:63760777-63760796 None:intergenic 45.0%
! TCTCCTCTTTTACTCCCTTC+CGG + chr1_1:63761050-63761069 None:intergenic 45.0%
CATTGCACTTTCCTTTGCAG+TGG - chr1_1:63761087-63761106 Msa0035530:intron 45.0%
!!! CTTTTTGGCTCGGATCATAG+TGG - chr1_1:63761182-63761201 Msa0035530:intron 45.0%
AAAACGGGCAGTTGGAGATT+TGG - chr1_1:63761219-63761238 Msa0035530:intron 45.0%
TGGTACAGCAATTCACCTCT+CGG - chr1_1:63761239-63761258 Msa0035530:intron 45.0%
GGCAGGCCATTTAAATACGA+AGG - chr1_1:63761329-63761348 Msa0035530:intron 45.0%
AGGACTGTGGTGATACGTAT+GGG - chr1_1:63761372-63761391 Msa0035530:intron 45.0%
TAGCACCATTCCACGCATTT+CGG + chr1_1:63761490-63761509 None:intergenic 45.0%
!! TGGTGGTTGGATTGGTGTTA+TGG - chr1_1:63761544-63761563 Msa0035530:intron 45.0%
!! GGTTGGATTGGTGTTATGGA+TGG - chr1_1:63761548-63761567 Msa0035530:intron 45.0%
! TTCCTTCTGGAGACTCAATC+CGG - chr1_1:63761579-63761598 Msa0035530:intron 45.0%
AGCATAATGCTTGTGCTAGG+AGG - chr1_1:63761834-63761853 Msa0035530:intron 45.0%
GCATAATGCTTGTGCTAGGA+GGG - chr1_1:63761835-63761854 Msa0035530:intron 45.0%
! TTCTGTGTCTGAGATCGTTG+TGG - chr1_1:63762051-63762070 Msa0035530:intron 45.0%
ATCGTTGTGGTGTGGAACAA+GGG - chr1_1:63762064-63762083 Msa0035530:intron 45.0%
CTAGATCACTAACTTCCGGA+GGG + chr1_1:63762093-63762112 None:intergenic 45.0%
TCTAGATCACTAACTTCCGG+AGG + chr1_1:63762094-63762113 None:intergenic 45.0%
TGATCTAGATTCAGCGGTAC+CGG - chr1_1:63762105-63762124 Msa0035530:intron 45.0%
TAATGTCGTCATCGAGCTCA+AGG + chr1_1:63762207-63762226 None:intergenic 45.0%
! ACATGTGATGATGTTGAGCG+AGG - chr1_1:63762232-63762251 Msa0035530:intron 45.0%
TAGAATCCAACAATCCGGTC+AGG + chr1_1:63762280-63762299 None:intergenic 45.0%
TTCTATCCTCGGCTTATTGC+CGG - chr1_1:63762295-63762314 Msa0035530:CDS 45.0%
!! TCTGTACTTTAATGGGCTCC+CGG + chr1_1:63762317-63762336 None:intergenic 45.0%
!! CTAGCTTTCAAGAGGTACTG+GGG - chr1_1:63762409-63762428 Msa0035530:intron 45.0%
GATAATGCACCTTCGTGTTG+CGG + chr1_1:63762600-63762619 None:intergenic 45.0%
! GTCGAATCCCCATTTTCGAT+CGG + chr1_1:63762674-63762693 None:intergenic 45.0%
GAAAATGGGGATTCGACAGT+AGG - chr1_1:63762677-63762696 Msa0035530:intron 45.0%
TTATGCCTCAAAACCCTTGG+GGG - chr1_1:63762928-63762947 Msa0035530:CDS 45.0%
! GGGATGGTTTGTGATGATGT+TGG - chr1_1:63762948-63762967 Msa0035530:CDS 45.0%
!! GGGATGCAATTGGAAGCATT+AGG - chr1_1:63762969-63762988 Msa0035530:CDS 45.0%
GGAATAGAAGGATGGGCAAA+TGG - chr1_1:63762990-63763009 Msa0035530:CDS 45.0%
!!! TTTTTTTTTTTTTTTTGAAT+TGG - chr1_1:63759103-63759122 Msa0035530:CDS 5.0%
!!! TTTTTTTTTTTTTTTGAATT+GGG - chr1_1:63759104-63759123 Msa0035530:CDS 5.0%
AGAGCCACCGCGTTACAAAT+GGG + chr1_1:63758496-63758515 None:intergenic 50.0%
ACAGATGCACAAGTCACCAC+AGG + chr1_1:63759256-63759275 None:intergenic 50.0%
! GCCAGCCAAAAAGGTACACA+AGG + chr1_1:63759422-63759441 None:intergenic 50.0%
! TTGAGGTGTCTCGAGTTCCT+AGG - chr1_1:63760691-63760710 Msa0035530:CDS 50.0%
GTACGGATAAGGGAGCAACA+TGG - chr1_1:63760851-63760870 Msa0035530:intron 50.0%
ATGCCGGAAGGGAGTAAAAG+AGG - chr1_1:63761044-63761063 Msa0035530:intron 50.0%
! GGCTCGGATCATAGTGGTTT+TGG - chr1_1:63761188-63761207 Msa0035530:intron 50.0%
CACCAAGAAAAACGGGCAGT+TGG - chr1_1:63761211-63761230 Msa0035530:intron 50.0%
!! CTCCAACTGCCCGTTTTTCT+TGG + chr1_1:63761216-63761235 None:intergenic 50.0%
CAGGACTGTGGTGATACGTA+TGG - chr1_1:63761371-63761390 Msa0035530:intron 50.0%
GTGGTGATACGTATGGGAGA+CGG - chr1_1:63761378-63761397 Msa0035530:intron 50.0%
TGGTGATACGTATGGGAGAC+GGG - chr1_1:63761379-63761398 Msa0035530:intron 50.0%
CAAACAAGAGCCGAAATGCG+TGG - chr1_1:63761477-63761496 Msa0035530:intron 50.0%
AAGAGCCGAAATGCGTGGAA+TGG - chr1_1:63761482-63761501 Msa0035530:intron 50.0%
GACGTTGGGCATCTAAGTGA+TGG + chr1_1:63761517-63761536 None:intergenic 50.0%
ACACCAATCCAACCACCAGA+CGG + chr1_1:63761542-63761561 None:intergenic 50.0%
! GTGCTATTGGGTGTGTTGCT+TGG - chr1_1:63761650-63761669 Msa0035530:intron 50.0%
CTCGGAGAAATGTTGGGACT+CGG + chr1_1:63761805-63761824 None:intergenic 50.0%
GGAGTTGGATTGATGTGCGT+AGG - chr1_1:63761884-63761903 Msa0035530:intron 50.0%
! TGTCTGAGATCGTTGTGGTG+TGG - chr1_1:63762056-63762075 Msa0035530:intron 50.0%
GATCGTTGTGGTGTGGAACA+AGG - chr1_1:63762063-63762082 Msa0035530:intron 50.0%
!! TAGATTCAGCGGTACCGGTA+AGG - chr1_1:63762110-63762129 Msa0035530:intron 50.0%
TCCTCTACCCTGATCCTTAC+CGG + chr1_1:63762127-63762146 None:intergenic 50.0%
CAACATCCTGACCGGATTGT+TGG - chr1_1:63762271-63762290 Msa0035530:CDS 50.0%
TCTATCCTCGGCTTATTGCC+GGG - chr1_1:63762296-63762315 Msa0035530:CDS 50.0%
GGGAGCCCATTAAAGTACAG+AGG - chr1_1:63762316-63762335 Msa0035530:CDS 50.0%
!! TTTCAAGAGGTACTGGGGAG+AGG - chr1_1:63762414-63762433 Msa0035530:intron 50.0%
AGAGGAAGCTAAGCAAGGGA+GGG - chr1_1:63762432-63762451 Msa0035530:intron 50.0%
GGATTCGACAGTAGGAGAGA+TGG - chr1_1:63762685-63762704 Msa0035530:intron 50.0%
TCGACAGTAGGAGAGATGGT+TGG - chr1_1:63762689-63762708 Msa0035530:intron 50.0%
CGACAGTAGGAGAGATGGTT+GGG - chr1_1:63762690-63762709 Msa0035530:intron 50.0%
CATCACAAACCATCCCCCAA+GGG + chr1_1:63762944-63762963 None:intergenic 50.0%
TCATCACAAACCATCCCCCA+AGG + chr1_1:63762945-63762964 None:intergenic 50.0%
CTGGCGACCCATTTGTAACG+CGG - chr1_1:63758486-63758505 Msa0035530:three_prime_UTR 55.0%
CAGAGCCACCGCGTTACAAA+TGG + chr1_1:63758497-63758516 None:intergenic 55.0%
GGTTCCGGTCAGATTAACGG+CGG - chr1_1:63758541-63758560 Msa0035530:three_prime_UTR 55.0%
GTTCCGGTCAGATTAACGGC+GGG - chr1_1:63758542-63758561 Msa0035530:three_prime_UTR 55.0%
TTCCGGTCAGATTAACGGCG+GGG - chr1_1:63758543-63758562 Msa0035530:three_prime_UTR 55.0%
TACCCCGCCGTTAATCTGAC+CGG + chr1_1:63758548-63758567 None:intergenic 55.0%
GTCACCACAGGATTCGCTAC+CGG + chr1_1:63759244-63759263 None:intergenic 55.0%
!! TATGGTGGGTGGGGTTAGTG+AGG - chr1_1:63759651-63759670 Msa0035530:CDS 55.0%
GGAGCAACATGGCAGCAACT+AGG - chr1_1:63760862-63760881 Msa0035530:intron 55.0%
GCAATTCACCTCTCGGTCCA+TGG - chr1_1:63761246-63761265 Msa0035530:intron 55.0%
TGAGGTTTCCATGGACCGAG+AGG + chr1_1:63761257-63761276 None:intergenic 55.0%
AAGAGCTTGGGAGCTCGCAA+TGG - chr1_1:63761305-63761324 Msa0035530:intron 55.0%
TACCGTATGGGTCAGGACTG+TGG - chr1_1:63761359-63761378 Msa0035530:intron 55.0%
CACCACAGTCCTGACCCATA+CGG + chr1_1:63761364-63761383 None:intergenic 55.0%
ACCACCAGACGGAAGACGTT+GGG + chr1_1:63761531-63761550 None:intergenic 55.0%
AACCACCAGACGGAAGACGT+TGG + chr1_1:63761532-63761551 None:intergenic 55.0%
AACGTCTTCCGTCTGGTGGT+TGG - chr1_1:63761531-63761550 Msa0035530:intron 55.0%
CTTCCGTCTGGTGGTTGGAT+TGG - chr1_1:63761536-63761555 Msa0035530:intron 55.0%
GATGGGGATCGTGTTCCTTC+TGG - chr1_1:63761566-63761585 Msa0035530:intron 55.0%
! CTTCTGGAGACTCAATCCGG+CGG - chr1_1:63761582-63761601 Msa0035530:intron 55.0%
AGACTCAATCCGGCGGTTCA+TGG - chr1_1:63761589-63761608 Msa0035530:intron 55.0%
TCAATCCGGCGGTTCATGGT+TGG - chr1_1:63761593-63761612 Msa0035530:intron 55.0%
CACAACCAACCATGAACCGC+CGG + chr1_1:63761601-63761620 None:intergenic 55.0%
! ATGTTGGGACTCGGTTCACG+CGG + chr1_1:63761796-63761815 None:intergenic 55.0%
CGAGTCCCAACATTTCTCCG+AGG - chr1_1:63761803-63761822 Msa0035530:intron 55.0%
GTGGAACAAGGGAATCCCTC+CGG - chr1_1:63762075-63762094 Msa0035530:intron 55.0%
!! AGCGGTACCGGTAAGGATCA+GGG - chr1_1:63762117-63762136 Msa0035530:intron 55.0%
ACCGGTAAGGATCAGGGTAG+AGG - chr1_1:63762123-63762142 Msa0035530:intron 55.0%
TCTGGCGTCAACATCCTGAC+CGG - chr1_1:63762263-63762282 Msa0035530:CDS 55.0%
TGGGGAGAGGAAGCTAAGCA+AGG - chr1_1:63762427-63762446 Msa0035530:intron 55.0%
GGGGAGAGGAAGCTAAGCAA+GGG - chr1_1:63762428-63762447 Msa0035530:intron 55.0%
GAGAGGAAGCTAAGCAAGGG+AGG - chr1_1:63762431-63762450 Msa0035530:intron 55.0%
AGCTAAGCAAGGGAGGGAAG+TGG - chr1_1:63762438-63762457 Msa0035530:intron 55.0%
TAAGCAAGGGAGGGAAGTGG+TGG - chr1_1:63762441-63762460 Msa0035530:intron 55.0%
!! GAAGTGTCGATAGCCCAAGC+CGG + chr1_1:63762553-63762572 None:intergenic 55.0%
! AGCGATTAGCCGCAACACGA+AGG - chr1_1:63762588-63762607 Msa0035530:intron 55.0%
! ACCATCCCCCAAGGGTTTTG+AGG + chr1_1:63762936-63762955 None:intergenic 55.0%
GCGACCCATTTGTAACGCGG+TGG - chr1_1:63758489-63758508 Msa0035530:three_prime_UTR 60.0%
GGTCAGATTAACGGCGGGGT+AGG - chr1_1:63758547-63758566 Msa0035530:three_prime_UTR 60.0%
CAGATTAACGGCGGGGTAGG+CGG - chr1_1:63758550-63758569 Msa0035530:three_prime_UTR 60.0%
! CGAACGATGATAGCGCGGCT+TGG - chr1_1:63759218-63759237 Msa0035530:CDS 60.0%
TTGGCCGGTAGCGAATCCTG+TGG - chr1_1:63759237-63759256 Msa0035530:CDS 60.0%
AGCTTGGGAGCTCGCAATGG+AGG - chr1_1:63761308-63761327 Msa0035530:intron 60.0%
GATGCCCAACGTCTTCCGTC+TGG - chr1_1:63761524-63761543 Msa0035530:intron 60.0%
CGCCGGATTGAGTCTCCAGA+AGG + chr1_1:63761584-63761603 None:intergenic 60.0%
! TGTTGGGACTCGGTTCACGC+GGG + chr1_1:63761795-63761814 None:intergenic 60.0%
TGACCTACGATGCTCGCCTG+TGG - chr1_1:63761990-63762009 Msa0035530:intron 60.0%
! GTTCCACAGGCGAGCATCGT+AGG + chr1_1:63761996-63762015 None:intergenic 60.0%
!! CAGCGGTACCGGTAAGGATC+AGG - chr1_1:63762116-63762135 Msa0035530:intron 60.0%
GTTGCGGCTAATCGCTGCAC+CGG + chr1_1:63762584-63762603 None:intergenic 60.0%
GCCTCAAAACCCTTGGGGGA+TGG - chr1_1:63762932-63762951 Msa0035530:CDS 60.0%
ATTAACGGCGGGGTAGGCGG+CGG - chr1_1:63758553-63758572 Msa0035530:three_prime_UTR 65.0%
! CGATGATAGCGCGGCTTGGC+CGG - chr1_1:63759222-63759241 Msa0035530:CDS 65.0%
TGGGAGCTCGCAATGGAGGC+AGG - chr1_1:63761312-63761331 Msa0035530:intron 65.0%
GCCCAACGTCTTCCGTCTGG+TGG - chr1_1:63761527-63761546 Msa0035530:intron 65.0%
GGGCTCCCGGCAATAAGCCG+AGG + chr1_1:63762304-63762323 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 63758368 63763209 63758368 ID=Msa0035530;Name=Msa0035530
chr1_1 mRNA 63758368 63763209 63758368 ID=Msa0035530-mRNA-1;Parent=Msa0035530;Name=Msa0035530-mRNA-1;_AED=0.01;_eAED=0.01;_QI=170|1|1|1|1|1|4|489|771
chr1_1 exon 63758368 63760542 63758368 ID=Msa0035530-mRNA-1:exon:20359;Parent=Msa0035530-mRNA-1
chr1_1 exon 63760632 63760799 63760632 ID=Msa0035530-mRNA-1:exon:20358;Parent=Msa0035530-mRNA-1
chr1_1 exon 63762247 63762369 63762247 ID=Msa0035530-mRNA-1:exon:20357;Parent=Msa0035530-mRNA-1
chr1_1 exon 63762701 63763209 63762701 ID=Msa0035530-mRNA-1:exon:20356;Parent=Msa0035530-mRNA-1
chr1_1 five_prime_UTR 63763040 63763209 63763040 ID=Msa0035530-mRNA-1:five_prime_utr;Parent=Msa0035530-mRNA-1
chr1_1 CDS 63762701 63763039 63762701 ID=Msa0035530-mRNA-1:cds;Parent=Msa0035530-mRNA-1
chr1_1 CDS 63762247 63762369 63762247 ID=Msa0035530-mRNA-1:cds;Parent=Msa0035530-mRNA-1
chr1_1 CDS 63760632 63760799 63760632 ID=Msa0035530-mRNA-1:cds;Parent=Msa0035530-mRNA-1
chr1_1 CDS 63758857 63760542 63758857 ID=Msa0035530-mRNA-1:cds;Parent=Msa0035530-mRNA-1
chr1_1 three_prime_UTR 63758368 63758856 63758368 ID=Msa0035530-mRNA-1:three_prime_utr;Parent=Msa0035530-mRNA-1
Gene Sequence

>Msa0035530

ATGGGTTCCGGTCAGATTAACGGCGGGGTAGGCGGCGGTTCTCATACTAACAACGGTGGTGGTAGTAACAGTTGTTGTGATATGAGTATGAAGTGTTGGTGTAGGTGGAGATTAGAAAATCAACACTACTATAACCGTTTTTTCTCTTCTGGTTTCGTTTTCTTCTTTGCTTGTTTCCTTTTCTTTGGATCCATTGCTAGCTTCTATGGTTGGCTTTCTTTTTCTCCTTCTGTTCATGAATCTCTTTCCCCTTTTGGTTGTCATGATGACAATGAGGGTTCTTGGTCTATTGGAATTTTCTATGGTGATTCTCCTTTTTCTCTTAAACCCATTGAATTTTCGAATGTATCGAACGATGATAGCGCGGCTTGGCCGGTAGCGAATCCTGTGGTGACTTGTGCATCTGTTTCTGATGCTGGTTTTCCAAGTAATTTTGTTGCTGACCCTTTTCTTTTTATTCAGGGAGATACTCTTTACCTGTTCTATGAGACAAAGAATTCAATCACCATGCAAGGTGATATTGGAGTTTCAAAGAGTACGGATAAGGGAGCAACATGGCAGCAACTAGGAATTGCCTTGAATGAGGATTGGCATCTTTCTTATCCTTATGTATTTGAGCATAATGGCCAGATATATATGATGCCGGAAGGGAGTAAAAGAGGAGATCTTCGTCTGTACAGAGCATTGCACTTTCCTTTGCAGTGGAAATTGGAAAAAGTTCTCGTAGAAAAGCCCCTTATTGATTCCTTTATCATTGACTATGATGGGAAGTATTGGCTTTTTGGCTCGGATCATAGTGGTTTTGGCACCAAGAAAAACGGGCAGTTGGAGATTTGGTACAGCAATTCACCTCTCGGTCCATGGAAACCTCACAAGAAAAACCCTATTTATAACATTGACAAGAGCTTGGGAGCTCGCAATGGAGGCAGGCCATTTAAATACGAAGGAAATCTTTACCGTATGGGTCAGGACTGTGGTGATACGTATGGGAGACGGGTGCGTGCTTTTCAGATAGAAACCCTTACAGCTGATGAATACAAAGAAATTGAAGTACCATTGGGCTTTGTTGAGTCAAACAAGAGCCGAAATGCGTGGAATGGTGCTAGATACCATCACTTAGATGCCCAACGTCTTCCGTCTGGTGGTTGGATTGGTGTTATGGATGGGGATCGTGTTCCTTCTGGAGACTCAATCCGGCGGTTCATGGTTGGTTGTGCTTCTGTTGCAGTCGCTGCTATACTCATTGTGCTATTGGGTGTGTTGCTTGGTTTTGTGAATTGTATTGTCCCTCTCAATTGGTTCATTCATAACTCTGGGAAGAGGAATCTAACTTCCTTGTCTTGGGAAAGACCAAATGCGTTCTCTTCAAAAGTAAGACGGTTCTGCACCCGCGTGAACCGAGTCCCAACATTTCTCCGAGGTAAGATAAAGCATAATGCTTGTGCTAGGAGGGTTATTCTTACTATAATCTTTGTAGCTGGAGTTGGATTGATGTGCGTAGGATTTAAAAATATTTATGGTGGTAATGGTTCAGAAGAACCTTATCCGTTGAAAGGTCAATACTCGCAGTTCACGTTATTGACAATGACCTACGATGCTCGCCTGTGGAACTTGAAGATGTATGTGAAACATTACTCGAGATGCTCTTCTGTGTCTGAGATCGTTGTGGTGTGGAACAAGGGAATCCCTCCGGAAGTTAGTGATCTAGATTCAGCGGTACCGGTAAGGATCAGGGTAGAGGAGAAAAACTCTCTAAATAATCGATTCAAGGAAGACCCGTTGATAAAAACTCGAGCAGTCCTTGAGCTCGATGACGACATTATGATGACATGTGATGATGTTGAGCGAGGTTTTAATGTCTGGCGTCAACATCCTGACCGGATTGTTGGATTCTATCCTCGGCTTATTGCCGGGAGCCCATTAAAGTACAGAGGAGAAAAATATGCACGGACACATAAAGGCTACAACATGATACTTACCGGTGCAGCATTTATTGATTCAAAACTAGCTTTCAAGAGGTACTGGGGAGAGGAAGCTAAGCAAGGGAGGGAAGTGGTGGACAAGTTATTTAACTGTGAAGATGTGCTTTTGAATTACTTGTATGCAAATGCTAGTTCATCGTCAAGGACAGTTGATTATGTGAAACCGGCTTGGGCTATCGACACTTCAAAGTTTTCCGGTGCAGCGATTAGCCGCAACACGAAGGTGCATTATCAATTGAGAAGCAATTGTCTAATGAAATTTTCGGAGATGTATGGAAGTTTAGCCGATCGAAAATGGGGATTCGACAGTAGGAGAGATGGTTGGGATGTATAG
Protein sequence

>Msa0035530

MGSGQINGGVGGGSHTNNGGGSNSCCDMSMKCWCRWRLENQHYYNRFFSSGFVFFFACFLFFGSIASFYGWLSFSPSVHESLSPFGCHDDNEGSWSIGIFYGDSPFSLKPIEFSNVSNDDSAAWPVANPVVTCASVSDAGFPSNFVADPFLFIQGDTLYLFYETKNSITMQGDIGVSKSTDKGATWQQLGIALNEDWHLSYPYVFEHNGQIYMMPEGSKRGDLRLYRALHFPLQWKLEKVLVEKPLIDSFIIDYDGKYWLFGSDHSGFGTKKNGQLEIWYSNSPLGPWKPHKKNPIYNIDKSLGARNGGRPFKYEGNLYRMGQDCGDTYGRRVRAFQIETLTADEYKEIEVPLGFVESNKSRNAWNGARYHHLDAQRLPSGGWIGVMDGDRVPSGDSIRRFMVGCASVAVAAILIVLLGVLLGFVNCIVPLNWFIHNSGKRNLTSLSWERPNAFSSKVRRFCTRVNRVPTFLRGKIKHNACARRVILTIIFVAGVGLMCVGFKNIYGGNGSEEPYPLKGQYSQFTLLTMTYDARLWNLKMYVKHYSRCSSVSEIVVVWNKGIPPEVSDLDSAVPVRIRVEEKNSLNNRFKEDPLIKTRAVLELDDDIMMTCDDVERGFNVWRQHPDRIVGFYPRLIAGSPLKYRGEKYARTHKGYNMILTGAAFIDSKLAFKRYWGEEAKQGREVVDKLFNCEDVLLNYLYANASSSSRTVDYVKPAWAIDTSKFSGAAISRNTKVHYQLRSNCLMKFSEMYGSLADRKWGFDSRRDGWDV*