AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0035610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0035610 MtrunA17_Chr1g0197731 98.314 771 13 0 1 771 1 771 0.0 1578
Msa0035610 MtrunA17_Chr5g0436731 33.193 238 131 6 538 755 85 314 1.48e-28 117
Msa0035610 MtrunA17_Chr1g0147601 28.244 262 164 11 516 758 66 322 2.56e-14 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0035610 AT5G04500.1 61.425 744 275 5 39 771 23 765 0.0 973
Msa0035610 AT3G55830.1 31.298 262 145 7 517 755 67 316 1.13e-25 109
Msa0035610 AT1G80290.1 27.374 179 120 3 586 755 121 298 4.93e-13 71.6
Msa0035610 AT1G80290.2 27.374 179 120 3 586 755 129 306 6.13e-13 71.2

Find 238 sgRNAs with CRISPR-Local

Find 381 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGAATCTCTTTCCCCTTT+TGG 0.113758 1_1:-63840653 Msa0035610:CDS
CCAAACCACCTTTCAGAAAA+TGG 0.124745 1_1:-63840906 Msa0035610:exon
CTTTCCTTTGCAGTGGAAAT+TGG 0.156359 1_1:-63838332 Msa0035610:CDS
AGTAAGTTGAATACAAATTT+TGG 0.174225 1_1:-63836246 Msa0035610:three_prime_UTR
GGATCCATTGCTAGCTTCTA+TGG 0.216390 1_1:-63840701 Msa0035610:CDS
TGGTATTGTAAAAGTTATTT+TGG 0.227517 1_1:-63836274 Msa0035610:three_prime_UTR
TCAATGGGTTTAAGAGAAAA+AGG 0.241800 1_1:+63840575 None:intergenic
TTTCTCCTCTGTACTTTAAT+GGG 0.244050 1_1:+63837105 None:intergenic
TGCTATACTCATTGTGCTAT+TGG 0.258919 1_1:-63837789 Msa0035610:CDS
GGCTCGGATCATAGTGGTTT+TGG 0.264045 1_1:-63838238 Msa0035610:CDS
CTCTTGTCAATGTTATAAAT+AGG 0.265701 1_1:+63838139 None:intergenic
GAAGTTTAGCCGATCGAAAA+TGG 0.272899 1_1:-63836764 Msa0035610:CDS
ATGTCTACAACATGTAAATT+TGG 0.272904 1_1:-63836558 Msa0035610:three_prime_UTR
AGATTTCCTTCGTATTTAAA+TGG 0.276458 1_1:+63838091 None:intergenic
GATGGGGATCGTGTTCCTTC+TGG 0.287009 1_1:-63837860 Msa0035610:CDS
TTCTATCCTCGGCTTATTGC+CGG 0.292050 1_1:-63837131 Msa0035610:CDS
CCTTATGTATTTGAGCATAA+TGG 0.305640 1_1:-63838507 Msa0035610:CDS
TCTTGTCAATGTTATAAATA+GGG 0.323269 1_1:+63838140 None:intergenic
TCCTCTACCCTGATCCTTAC+CGG 0.325557 1_1:+63837302 None:intergenic
AGAAACTGTAATTCTGATTC+TGG 0.331959 1_1:-63836374 Msa0035610:three_prime_UTR
AAAACGGGCAGTTGGAGATT+TGG 0.333853 1_1:-63838207 Msa0035610:CDS
ATCACCATGCAAGGTGATAT+TGG 0.334120 1_1:-63838609 Msa0035610:CDS
AATGAGGGTTCTTGGTCTAT+TGG 0.334831 1_1:-63840617 Msa0035610:CDS
ATGTAAATTTGGTTCTATAA+TGG 0.341661 1_1:-63836547 Msa0035610:three_prime_UTR
TGGTGGTTGGATTGGTGTTA+TGG 0.341798 1_1:-63837882 Msa0035610:CDS
TGTGCATCTGTTTCTGATGC+TGG 0.345247 1_1:-63840160 Msa0035610:CDS
TCCTTTATCATTGACTATGA+TGG 0.346859 1_1:-63838277 Msa0035610:CDS
CAATGATAAAGGAATCAATA+AGG 0.348404 1_1:+63838287 None:intergenic
GGATGGTTTGTGATGATGTT+GGG 0.363890 1_1:-63836477 Msa0035610:three_prime_UTR
TGGGATGTATAGTATTAGTA+TGG 0.375704 1_1:-63836717 Msa0035610:exon
TATTGACCTTTCAACGGATA+AGG 0.379043 1_1:+63837482 None:intergenic
TAGCACCATTCCACGCATTT+CGG 0.380197 1_1:+63837939 None:intergenic
AACTAGCTTTCAAGAGGTAC+TGG 0.384132 1_1:-63837019 Msa0035610:CDS
CCCATCATAGTCAATGATAA+AGG 0.384298 1_1:+63838276 None:intergenic
CTTTGTATTCATCAGCTGTA+AGG 0.385106 1_1:+63838002 None:intergenic
GGAATCTAACTTCCTTGTCT+TGG 0.391386 1_1:-63837700 Msa0035610:CDS
CAGAGCCACCGCGTTACAAA+TGG 0.391850 1_1:+63840931 None:intergenic
CAGCGGTACCGGTAAGGATC+AGG 0.393458 1_1:-63837310 Msa0035610:CDS
GGGATGGTTTGTGATGATGT+TGG 0.393606 1_1:-63836478 Msa0035610:three_prime_UTR
GCTATACTCATTGTGCTATT+GGG 0.394366 1_1:-63837788 Msa0035610:CDS
ATTGTATTGTCCCTCTCAAT+TGG 0.397061 1_1:-63837745 Msa0035610:CDS
GAAACTGTAATTCTGATTCT+GGG 0.398249 1_1:-63836373 Msa0035610:three_prime_UTR
GGCTACAACATGATACTTAC+CGG 0.400952 1_1:-63837062 Msa0035610:CDS
AGACTCAATCCGGCGGTTCA+TGG 0.402151 1_1:-63837837 Msa0035610:CDS
AATTGGTTCATTCATAACTC+TGG 0.403047 1_1:-63837728 Msa0035610:CDS
AGAGAAACTTACAAATTCAA+TGG 0.403178 1_1:+63840559 None:intergenic
TTGGAAGCATTAGGAATAGA+AGG 0.405567 1_1:-63836448 Msa0035610:three_prime_UTR
CTCTCTAAATAATCGATTCA+AGG 0.406351 1_1:-63837273 Msa0035610:CDS
GAATCTAACTTCCTTGTCTT+GGG 0.411558 1_1:-63837699 Msa0035610:CDS
AAATATGCACGGACACATAA+AGG 0.414287 1_1:-63837083 Msa0035610:CDS
GACAGTTGATTATGTGAAAC+CGG 0.419715 1_1:-63836895 Msa0035610:CDS
AGTTTCTGAGGAATGTCTTC+AGG 0.420786 1_1:+63836390 None:intergenic
CAAACCACCTTTCAGAAAAT+GGG 0.420800 1_1:-63840905 Msa0035610:exon
CGATGATAGCGCGGCTTGGC+CGG 0.421476 1_1:-63840203 Msa0035610:CDS
ATAGTATTAGTATGGACTAA+TGG 0.424608 1_1:-63836709 Msa0035610:exon
ATAATCTTTGTAGCTGGAGT+TGG 0.425291 1_1:-63837557 Msa0035610:CDS
AATGATAAAGGAATCAATAA+GGG 0.426417 1_1:+63838288 None:intergenic
AATTCTTTGTCTCATAGAAC+AGG 0.427122 1_1:+63838634 None:intergenic
CAACATCCTGACCGGATTGT+TGG 0.428753 1_1:-63837155 Msa0035610:CDS
ATGGGTTCCGGTCAGATTAA+CGG 0.429979 1_1:-63840887 Msa0035610:CDS
ATCTTACCTCGGAGAAATGT+TGG 0.431402 1_1:+63837617 None:intergenic
AGTTTCAAAGAGTACGGATA+AGG 0.433171 1_1:-63838586 Msa0035610:CDS
GGAATAGAAGGATGGGCAAA+TGG 0.438464 1_1:-63836436 Msa0035610:three_prime_UTR
GGTTGGATTGGTGTTATGGA+TGG 0.439578 1_1:-63837878 Msa0035610:CDS
TGGGAGCTCGCAATGGAGGC+AGG 0.442449 1_1:-63838114 Msa0035610:CDS
GGATTGTTGGATTCTATCCT+CGG 0.443384 1_1:-63837142 Msa0035610:CDS
GTGCTATTGGGTGTGTTGCT+TGG 0.443919 1_1:-63837776 Msa0035610:CDS
AACGTCTTCCGTCTGGTGGT+TGG 0.445900 1_1:-63837895 Msa0035610:CDS
TTGATTATGTGAAACCGGCT+TGG 0.446271 1_1:-63836890 Msa0035610:CDS
CCATTGCTAGCTTCTATGGT+TGG 0.451469 1_1:-63840697 Msa0035610:CDS
CGACAGTAGGAGAGATGGTT+GGG 0.452982 1_1:-63836736 Msa0035610:CDS
TGATTATGTGAAACCGGCTT+GGG 0.453603 1_1:-63836889 Msa0035610:CDS
CTTACTATAATCTTTGTAGC+TGG 0.454212 1_1:-63837563 Msa0035610:CDS
TATAACATTGACAAGAGCTT+GGG 0.454360 1_1:-63838133 Msa0035610:CDS
CAAAGAAATTGAAGTACCAT+TGG 0.455009 1_1:-63837984 Msa0035610:CDS
ATGATGACAATGAGGGTTCT+TGG 0.455448 1_1:-63840625 Msa0035610:CDS
GAGAAACTTACAAATTCAAT+GGG 0.460045 1_1:+63840560 None:intergenic
AAGTTTAGCCGATCGAAAAT+GGG 0.461026 1_1:-63836763 Msa0035610:CDS
TCTATCCTCGGCTTATTGCC+GGG 0.461511 1_1:-63837130 Msa0035610:CDS
TCTTACCTCGGAGAAATGTT+GGG 0.461948 1_1:+63837618 None:intergenic
AATTATGCCTCAAAACCCTT+GGG 0.463371 1_1:-63836500 Msa0035610:three_prime_UTR
CTTCCGTCTGGTGGTTGGAT+TGG 0.464986 1_1:-63837890 Msa0035610:CDS
GTTGGATTGGTGTTATGGAT+GGG 0.465211 1_1:-63837877 Msa0035610:CDS
CTCGGAGAAATGTTGGGACT+CGG 0.469842 1_1:+63837624 None:intergenic
TTGGATTGGTGTTATGGATG+GGG 0.476704 1_1:-63837876 Msa0035610:CDS
CCTTTATCATTGACTATGAT+GGG 0.476834 1_1:-63838276 Msa0035610:CDS
AAAGAAATTGAAGTACCATT+GGG 0.480045 1_1:-63837983 Msa0035610:CDS
ACCACCAGACGGAAGACGTT+GGG 0.480499 1_1:+63837898 None:intergenic
CCATTATGCTCAAATACATA+AGG 0.483104 1_1:+63838507 None:intergenic
TTTGTATTCATCAGCTGTAA+GGG 0.484731 1_1:+63838003 None:intergenic
TTGACTATGATGGGAAGTAT+TGG 0.487593 1_1:-63838267 Msa0035610:CDS
ACCTTTCAGAAAATGGGTTC+CGG 0.488909 1_1:-63840899 Msa0035610:exon
AAATTATGCCTCAAAACCCT+TGG 0.489743 1_1:-63836501 Msa0035610:three_prime_UTR
GGGATGCAATTGGAAGCATT+AGG 0.490007 1_1:-63836457 Msa0035610:three_prime_UTR
TGATGATGTTGGGATGCAAT+TGG 0.491252 1_1:-63836467 Msa0035610:three_prime_UTR
AAGATGCCAATCCTCATTCA+AGG 0.491489 1_1:+63838536 None:intergenic
CGAAGGAAATCTTTACCGTA+TGG 0.492098 1_1:-63838080 Msa0035610:CDS
GATGCCCAACGTCTTCCGTC+TGG 0.493272 1_1:-63837902 Msa0035610:CDS
GAATCTAGATCACTAACTTC+CGG 0.493581 1_1:+63837332 None:intergenic
TGTCATCATGACAACCAAAA+GGG 0.495807 1_1:+63840639 None:intergenic
AAATCTTTACCGTATGGGTC+AGG 0.496835 1_1:-63838074 Msa0035610:CDS
TTATAACATTGACAAGAGCT+TGG 0.499394 1_1:-63838134 Msa0035610:CDS
GGTCAGATTAACGGCGGGGT+AGG 0.499775 1_1:-63840878 Msa0035610:CDS
CAGATTAACGGCGGGGTAGG+CGG 0.499877 1_1:-63840875 Msa0035610:CDS
TTGTCATCATGACAACCAAA+AGG 0.500668 1_1:+63840638 None:intergenic
ATTAACGGCGGGGTAGGCGG+CGG 0.501296 1_1:-63840872 Msa0035610:CDS
GCAATTCACCTCTCGGTCCA+TGG 0.502000 1_1:-63838180 Msa0035610:CDS
TGATCTAGATTCAGCGGTAC+CGG 0.505621 1_1:-63837321 Msa0035610:CDS
TTTCAAGAGGTACTGGGGAG+AGG 0.505985 1_1:-63837012 Msa0035610:CDS
TGAATCAATAAATGCTGCAC+CGG 0.512023 1_1:+63837043 None:intergenic
ATTGGTTCATTCATAACTCT+GGG 0.512978 1_1:-63837727 Msa0035610:CDS
GGGTCAGCAACAAAATTACT+TGG 0.515463 1_1:+63840133 None:intergenic
CAGGACTGTGGTGATACGTA+TGG 0.516883 1_1:-63838055 Msa0035610:CDS
ACCGGTAAGGATCAGGGTAG+AGG 0.518173 1_1:-63837303 Msa0035610:CDS
AGAGCCACCGCGTTACAAAT+GGG 0.519798 1_1:+63840932 None:intergenic
ACTAGGAATTGCCTTGAATG+AGG 0.521328 1_1:-63838547 Msa0035610:CDS
TAGCAATGGATCCAAAGAAA+AGG 0.521642 1_1:+63840711 None:intergenic
GTTTCAAAGAGTACGGATAA+GGG 0.523002 1_1:-63838585 Msa0035610:CDS
CATTGCACTTTCCTTTGCAG+TGG 0.523498 1_1:-63838339 Msa0035610:CDS
TATTGGAGTTTCAAAGAGTA+CGG 0.524365 1_1:-63838592 Msa0035610:CDS
TAGAATCCAACAATCCGGTC+AGG 0.527675 1_1:+63837149 None:intergenic
TGTATTTGAGCATAATGGCC+AGG 0.530888 1_1:-63838502 Msa0035610:intron
TTCCTTCTGGAGACTCAATC+CGG 0.531875 1_1:-63837847 Msa0035610:CDS
TAATGTCGTCATCGAGCTCA+AGG 0.532235 1_1:+63837222 None:intergenic
GAATTGCCTTGAATGAGGAT+TGG 0.533054 1_1:-63838542 Msa0035610:CDS
GAGAGGAAGCTAAGCAAGGG+AGG 0.533300 1_1:-63836995 Msa0035610:CDS
GATAATGCACCTTCGTGTTG+CGG 0.533746 1_1:+63836829 None:intergenic
TCTGTACTTTAATGGGCTCC+CGG 0.533855 1_1:+63837112 None:intergenic
GTGATATGAGTATGAAGTGT+TGG 0.534977 1_1:-63840811 Msa0035610:CDS
GAAAATGGGGATTCGACAGT+AGG 0.535860 1_1:-63836749 Msa0035610:CDS
GCATAATGCTTGTGCTAGGA+GGG 0.541579 1_1:-63837591 Msa0035610:CDS
CATTATGCTTTATCTTACCT+CGG 0.542422 1_1:+63837606 None:intergenic
TAGATTCAGCGGTACCGGTA+AGG 0.543691 1_1:-63837316 Msa0035610:CDS
AATCAGAATTACAGTTTCTG+AGG 0.544271 1_1:+63836378 None:intergenic
GAAGAACCTTATCCGTTGAA+AGG 0.544275 1_1:-63837488 Msa0035610:CDS
GAAAGAGATTCATGAACAGA+AGG 0.544334 1_1:+63840662 None:intergenic
TCGACAGTAGGAGAGATGGT+TGG 0.545034 1_1:-63836737 Msa0035610:CDS
ATTCAAAACTAGCTTTCAAG+AGG 0.546190 1_1:-63837025 Msa0035610:CDS
TCAATCCGGCGGTTCATGGT+TGG 0.548450 1_1:-63837833 Msa0035610:CDS
AGCTAAGCAAGGGAGGGAAG+TGG 0.548606 1_1:-63836988 Msa0035610:CDS
ACTAGCTTTCAAGAGGTACT+GGG 0.549497 1_1:-63837018 Msa0035610:CDS
TGAGTATGAAGTGTTGGTGT+AGG 0.549917 1_1:-63840805 Msa0035610:CDS
ATCACAGATATATATGATGC+CGG 0.552195 1_1:-63838398 Msa0035610:intron
GTCACCACAGGATTCGCTAC+CGG 0.553989 1_1:+63840184 None:intergenic
GCCCAACGTCTTCCGTCTGG+TGG 0.557248 1_1:-63837899 Msa0035610:CDS
TGGTACAGCAATTCACCTCT+CGG 0.557368 1_1:-63838187 Msa0035610:CDS
ATGCCGGAAGGGAGTAAAAG+AGG 0.559467 1_1:-63838382 Msa0035610:CDS
TGGTGATACGTATGGGAGAC+GGG 0.560756 1_1:-63838047 Msa0035610:CDS
GAGGATAGAATCCAACAATC+CGG 0.563211 1_1:+63837144 None:intergenic
AGCATAATGCTTGTGCTAGG+AGG 0.563853 1_1:-63837592 Msa0035610:CDS
TACCCCGCCGTTAATCTGAC+CGG 0.564408 1_1:+63840880 None:intergenic
TAAAGCATAATGCTTGTGCT+AGG 0.565788 1_1:-63837595 Msa0035610:CDS
TCATTCATAACTCTGGGAAG+AGG 0.566130 1_1:-63837721 Msa0035610:CDS
AAGCATTAGGAATAGAAGGA+TGG 0.570766 1_1:-63836444 Msa0035610:three_prime_UTR
CGAACGATGATAGCGCGGCT+TGG 0.572568 1_1:-63840207 Msa0035610:CDS
AAGAGCCGAAATGCGTGGAA+TGG 0.573439 1_1:-63837944 Msa0035610:CDS
GTTCCACAGGCGAGCATCGT+AGG 0.573695 1_1:+63837433 None:intergenic
AACTCCAATATCACCTTGCA+TGG 0.573916 1_1:+63838605 None:intergenic
CGTTCTCTTCAAAAGTAAGA+CGG 0.576152 1_1:-63837664 Msa0035610:CDS
GTTGCGGCTAATCGCTGCAC+CGG 0.576470 1_1:+63836845 None:intergenic
CACAACCAACCATGAACCGC+CGG 0.576997 1_1:+63837828 None:intergenic
GTGGAACAAGGGAATCCCTC+CGG 0.579260 1_1:-63837351 Msa0035610:CDS
AAGAATTCAATCACCATGCA+AGG 0.579369 1_1:-63838618 Msa0035610:CDS
AGCATTAGGAATAGAAGGAT+GGG 0.579569 1_1:-63836443 Msa0035610:three_prime_UTR
TGCGAGTATTGACCTTTCAA+CGG 0.580266 1_1:+63837476 None:intergenic
GGAGCAACATGGCAGCAACT+AGG 0.582780 1_1:-63838564 Msa0035610:CDS
GTATGAAGTGTTGGTGTAGG+TGG 0.583861 1_1:-63840802 Msa0035610:CDS
AAGAGCTTGGGAGCTCGCAA+TGG 0.585420 1_1:-63838121 Msa0035610:CDS
CATACATCTTCAAGTTCCAC+AGG 0.588362 1_1:+63837420 None:intergenic
CAGATATATATGATGCCGGA+AGG 0.589587 1_1:-63838394 Msa0035610:CDS
TGGGGAGAGGAAGCTAAGCA+AGG 0.590285 1_1:-63836999 Msa0035610:CDS
GTTCCGGTCAGATTAACGGC+GGG 0.590294 1_1:-63840883 Msa0035610:CDS
GATCGTTGTGGTGTGGAACA+AGG 0.592038 1_1:-63837363 Msa0035610:CDS
AGCTTGGGAGCTCGCAATGG+AGG 0.592698 1_1:-63838118 Msa0035610:CDS
GACGTTGGGCATCTAAGTGA+TGG 0.595031 1_1:+63837912 None:intergenic
TCTGGCGTCAACATCCTGAC+CGG 0.596046 1_1:-63837163 Msa0035610:CDS
AGGACTGTGGTGATACGTAT+GGG 0.601094 1_1:-63838054 Msa0035610:CDS
ATGATAAAGGAATCAATAAG+GGG 0.606565 1_1:+63838289 None:intergenic
GGGGAGAGGAAGCTAAGCAA+GGG 0.608405 1_1:-63836998 Msa0035610:CDS
GGCAGGCCATTTAAATACGA+AGG 0.608753 1_1:-63838097 Msa0035610:CDS
GGTTGTCATGATGACAATGA+GGG 0.609801 1_1:-63840632 Msa0035610:CDS
AGCGATTAGCCGCAACACGA+AGG 0.609845 1_1:-63836838 Msa0035610:CDS
AGCGGTACCGGTAAGGATCA+GGG 0.609885 1_1:-63837309 Msa0035610:CDS
TTATGCCTCAAAACCCTTGG+GGG 0.612517 1_1:-63836498 Msa0035610:three_prime_UTR
CGCCGGATTGAGTCTCCAGA+AGG 0.613527 1_1:+63837845 None:intergenic
TACCGTATGGGTCAGGACTG+TGG 0.613693 1_1:-63838067 Msa0035610:CDS
GAAGTGTCGATAGCCCAAGC+CGG 0.614580 1_1:+63836876 None:intergenic
GAAGGAAATCTTTACCGTAT+GGG 0.615740 1_1:-63838079 Msa0035610:CDS
TTCCGGTCAGATTAACGGCG+GGG 0.616814 1_1:-63840882 Msa0035610:CDS
ATGTTGGGACTCGGTTCACG+CGG 0.617024 1_1:+63837633 None:intergenic
ATTTGGTCTTTCCCAAGACA+AGG 0.619015 1_1:+63837688 None:intergenic
GTGGTGATACGTATGGGAGA+CGG 0.619253 1_1:-63838048 Msa0035610:CDS
TTCTGTGTCTGAGATCGTTG+TGG 0.621604 1_1:-63837375 Msa0035610:CDS
TGACCTACGATGCTCGCCTG+TGG 0.622217 1_1:-63837436 Msa0035610:CDS
TTGTATGAACTGTCAAATGC+TGG 0.624256 1_1:-63840958 Msa0035610:five_prime_UTR
GTCATCATGACAACCAAAAG+GGG 0.624661 1_1:+63840640 None:intergenic
GGATTCGACAGTAGGAGAGA+TGG 0.626958 1_1:-63836741 Msa0035610:CDS
AAACTGTAATTCTGATTCTG+GGG 0.627313 1_1:-63836372 Msa0035610:three_prime_UTR
AGATATATATGATGCCGGAA+GGG 0.631328 1_1:-63838393 Msa0035610:CDS
AACCACCAGACGGAAGACGT+TGG 0.631744 1_1:+63837897 None:intergenic
TATGAATGAACCAATTGAGA+GGG 0.632355 1_1:+63837735 None:intergenic
AGTTTAGCCGATCGAAAATG+GGG 0.632696 1_1:-63836762 Msa0035610:CDS
CAAACAAGAGCCGAAATGCG+TGG 0.635974 1_1:-63837949 Msa0035610:CDS
TGGTTGTCATGATGACAATG+AGG 0.636031 1_1:-63840633 Msa0035610:CDS
ACAGATGCACAAGTCACCAC+AGG 0.637261 1_1:+63840172 None:intergenic
AGAGGAAGCTAAGCAAGGGA+GGG 0.637342 1_1:-63836994 Msa0035610:CDS
CACCACAGTCCTGACCCATA+CGG 0.637381 1_1:+63838065 None:intergenic
ATTATGCCTCAAAACCCTTG+GGG 0.639024 1_1:-63836499 Msa0035610:three_prime_UTR
TCTCATACTAACAACGGTGG+TGG 0.643406 1_1:-63840848 Msa0035610:CDS
TAAGCAAGGGAGGGAAGTGG+TGG 0.643612 1_1:-63836985 Msa0035610:CDS
ATCGTTGTGGTGTGGAACAA+GGG 0.644387 1_1:-63837362 Msa0035610:CDS
TTATGAATGAACCAATTGAG+AGG 0.646864 1_1:+63837734 None:intergenic
TCTAGATCACTAACTTCCGG+AGG 0.648134 1_1:+63837335 None:intergenic
GCGACCCATTTGTAACGCGG+TGG 0.650964 1_1:-63840936 Msa0035610:five_prime_UTR
CTAGATCACTAACTTCCGGA+GGG 0.652302 1_1:+63837336 None:intergenic
CAAATGCTAGTTCATCGTCA+AGG 0.655114 1_1:-63836917 Msa0035610:CDS
GGAGTTGGATTGATGTGCGT+AGG 0.660500 1_1:-63837542 Msa0035610:CDS
AGTTAGTGATCTAGATTCAG+CGG 0.661489 1_1:-63837327 Msa0035610:CDS
CCAACCATAGAAGCTAGCAA+TGG 0.663121 1_1:+63840697 None:intergenic
TGTCTGAGATCGTTGTGGTG+TGG 0.663302 1_1:-63837370 Msa0035610:CDS
ACACCAATCCAACCACCAGA+CGG 0.667048 1_1:+63837887 None:intergenic
TTTGACTCAACAAAGCCCAA+TGG 0.669676 1_1:+63837968 None:intergenic
GGGCTCCCGGCAATAAGCCG+AGG 0.671052 1_1:+63837125 None:intergenic
TGAGGTTTCCATGGACCGAG+AGG 0.673472 1_1:+63838172 None:intergenic
GGCGGTTCTCATACTAACAA+CGG 0.677094 1_1:-63840854 Msa0035610:CDS
TGTTGGGACTCGGTTCACGC+GGG 0.677835 1_1:+63837634 None:intergenic
CTAGCTTTCAAGAGGTACTG+GGG 0.677896 1_1:-63837017 Msa0035610:CDS
CTGGCGACCCATTTGTAACG+CGG 0.684847 1_1:-63840939 Msa0035610:five_prime_UTR
CTTCTGGAGACTCAATCCGG+CGG 0.689338 1_1:-63837844 Msa0035610:CDS
TGTATCGAACGATGATAGCG+CGG 0.689557 1_1:-63840212 Msa0035610:CDS
ACATGTGATGATGTTGAGCG+AGG 0.706003 1_1:-63837194 Msa0035610:CDS
GCATTTGACAGTTCATACAA+CGG 0.707966 1_1:+63840961 None:intergenic
TTGGCCGGTAGCGAATCCTG+TGG 0.708560 1_1:-63840188 Msa0035610:CDS
GGGAGCCCATTAAAGTACAG+AGG 0.710310 1_1:-63837110 Msa0035610:CDS
GGTTCCGGTCAGATTAACGG+CGG 0.723354 1_1:-63840884 Msa0035610:CDS
GTACGGATAAGGGAGCAACA+TGG 0.724011 1_1:-63838575 Msa0035610:CDS
CGAGTCCCAACATTTCTCCG+AGG 0.734337 1_1:-63837623 Msa0035610:CDS
GGTTCTCATACTAACAACGG+TGG 0.740200 1_1:-63840851 Msa0035610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAACAATATGTATATAAAAA+AGG + chr1_1:63837329-63837348 None:intergenic 10.0%
!! ATATAAAAAATAAAATACCT+AGG + chr1_1:63838582-63838601 None:intergenic 10.0%
!!! TAAATTTACTTTATTTTTCA+CGG + chr1_1:63838829-63838848 None:intergenic 10.0%
!! AAAATAAAAAAATCACAAAT+GGG + chr1_1:63840700-63840719 None:intergenic 10.0%
!! TAAAATAAAAAAATCACAAA+TGG + chr1_1:63840701-63840720 None:intergenic 10.0%
!! AAAGTAAAAGTAAATAATAC+AGG - chr1_1:63837869-63837888 Msa0035610:CDS 15.0%
!! AAGTAAAAGTAAATAATACA+GGG - chr1_1:63837870-63837889 Msa0035610:CDS 15.0%
!! GTAGGATTTAAAAATATTTA+TGG - chr1_1:63839773-63839792 Msa0035610:intron 15.0%
!!! TTGTGATTTTTTTATTTTAG+AGG - chr1_1:63840702-63840721 Msa0035610:CDS 15.0%
!!! TGTGATTTTTTTATTTTAGA+GGG - chr1_1:63840703-63840722 Msa0035610:CDS 15.0%
!!! GGTATTTGTTTTTATGATTT+TGG - chr1_1:63836997-63837016 Msa0035610:CDS 20.0%
!!! TTTTTATGATTTTGGTTTGA+GGG - chr1_1:63837005-63837024 Msa0035610:CDS 20.0%
!! TAACCTGAATAAAAAGAAAA+GGG + chr1_1:63837187-63837206 None:intergenic 20.0%
!! ATAAATGAGATGAAAGTTTA+TGG - chr1_1:63837505-63837524 Msa0035610:CDS 20.0%
!!! TGATAAAGATTCTGAAATTT+AGG - chr1_1:63837668-63837687 Msa0035610:CDS 20.0%
!! TATATCTATCTATGTATTGA+AGG - chr1_1:63837707-63837726 Msa0035610:CDS 20.0%
!! CAAAAAATTTAGTTGCAATA+GGG - chr1_1:63837737-63837756 Msa0035610:CDS 20.0%
!!! TGAAATTCTTTTCCAAATTT+AGG - chr1_1:63838081-63838100 Msa0035610:CDS 20.0%
!!! TCATTGTTTTCTCATTTTTT+TGG - chr1_1:63838340-63838359 Msa0035610:CDS 20.0%
!!! CATTGTTTTCTCATTTTTTT+GGG - chr1_1:63838341-63838360 Msa0035610:CDS 20.0%
!! AATGATAAAGGAATCAATAA+GGG + chr1_1:63839012-63839031 None:intergenic 20.0%
!! TCTTGTCAATGTTATAAATA+GGG + chr1_1:63839160-63839179 None:intergenic 20.0%
!! GGATTTAAAAATATTTATGG+TGG - chr1_1:63839776-63839795 Msa0035610:intron 20.0%
!! AAAAATATTTATGGTGGTAA+TGG - chr1_1:63839782-63839801 Msa0035610:intron 20.0%
!!! CAATTGTCTAATGAAATTTT+CGG - chr1_1:63840501-63840520 Msa0035610:intron 20.0%
!!! TATTTTGTTACATCTTTTGT+GGG - chr1_1:63840649-63840668 Msa0035610:CDS 20.0%
!!! ATGTAAATTTGGTTCTATAA+TGG - chr1_1:63840750-63840769 Msa0035610:CDS 20.0%
!!! TGGTATTGTAAAAGTTATTT+TGG - chr1_1:63841023-63841042 Msa0035610:five_prime_UTR 20.0%
!!! AGTAAGTTGAATACAAATTT+TGG - chr1_1:63841051-63841070 Msa0035610:five_prime_UTR 20.0%
!!! TTTCGCTTTTTTGTTGTTTT+TGG + chr1_1:63836314-63836333 None:intergenic 25.0%
! GAGAAACTTACAAATTCAAT+GGG + chr1_1:63836740-63836759 None:intergenic 25.0%
! AGAGAAACTTACAAATTCAA+TGG + chr1_1:63836741-63836760 None:intergenic 25.0%
!!! CATGATTCTGTTGATTTTTT+CGG - chr1_1:63836782-63836801 Msa0035610:CDS 25.0%
! AAATTCACAACACATAACAA+GGG + chr1_1:63836908-63836927 None:intergenic 25.0%
! AAAATTCACAACACATAACA+AGG + chr1_1:63836909-63836928 None:intergenic 25.0%
!!! GTTTTTATGATTTTGGTTTG+AGG - chr1_1:63837004-63837023 Msa0035610:CDS 25.0%
! CTAACCTGAATAAAAAGAAA+AGG + chr1_1:63837188-63837207 None:intergenic 25.0%
! TCTTTATTCCTTTGTATATC+TGG - chr1_1:63837225-63837244 Msa0035610:CDS 25.0%
! ATAAAAAAGGTGAGAATTTC+TGG + chr1_1:63837316-63837335 None:intergenic 25.0%
! ATCAAGCTTCAATTAATTGA+GGG + chr1_1:63837391-63837410 None:intergenic 25.0%
! TATCAAGCTTCAATTAATTG+AGG + chr1_1:63837392-63837411 None:intergenic 25.0%
! TCTGATTATGACATCATATA+TGG - chr1_1:63837482-63837501 Msa0035610:CDS 25.0%
! TTATGTTGTTCTTATCTACA+AGG - chr1_1:63837548-63837567 Msa0035610:CDS 25.0%
! CTTATAGCAAAATCATCAAT+TGG - chr1_1:63837617-63837636 Msa0035610:CDS 25.0%
!!! CCTATTGCAACTAAATTTTT+TGG + chr1_1:63837739-63837758 None:intergenic 25.0%
! CCAAAAAATTTAGTTGCAAT+AGG - chr1_1:63837736-63837755 Msa0035610:CDS 25.0%
! TTTCCTTTCTCAAACAAAAT+AGG + chr1_1:63838026-63838045 None:intergenic 25.0%
!! TTTTCCAAATTTAGGAACAA+AGG - chr1_1:63838089-63838108 Msa0035610:CDS 25.0%
! ATGATAAAGGAATCAATAAG+GGG + chr1_1:63839011-63839030 None:intergenic 25.0%
! CAATGATAAAGGAATCAATA+AGG + chr1_1:63839013-63839032 None:intergenic 25.0%
! CTCTTGTCAATGTTATAAAT+AGG + chr1_1:63839161-63839180 None:intergenic 25.0%
! AGATTTCCTTCGTATTTAAA+TGG + chr1_1:63839209-63839228 None:intergenic 25.0%
!! AAAGAAATTGAAGTACCATT+GGG - chr1_1:63839314-63839333 Msa0035610:intron 25.0%
!! ATAGTATTAGTATGGACTAA+TGG - chr1_1:63840588-63840607 Msa0035610:CDS 25.0%
!!! ATGGAGTGTTTTTTTTAGTT+AGG - chr1_1:63840607-63840626 Msa0035610:CDS 25.0%
!!! GTTTTTTTTAGTTAGGTCTT+TGG - chr1_1:63840614-63840633 Msa0035610:CDS 25.0%
!! GTATTTTGTTACATCTTTTG+TGG - chr1_1:63840648-63840667 Msa0035610:CDS 25.0%
! ATGTCTACAACATGTAAATT+TGG - chr1_1:63840739-63840758 Msa0035610:CDS 25.0%
!!! TCAATTGTTGCTTTTTTACT+TGG - chr1_1:63840951-63840970 Msa0035610:five_prime_UTR 25.0%
!!! CTTAGAAATTGATTTTGACT+TGG - chr1_1:63840999-63841018 Msa0035610:five_prime_UTR 25.0%
!!! TATAACCGTTTTTTCTCTTC+TGG - chr1_1:63836539-63836558 Msa0035610:three_prime_UTR 30.0%
! TTTGCTTGTTTCCTTTTCTT+TGG - chr1_1:63836575-63836594 Msa0035610:three_prime_UTR 30.0%
! TGGTCTATTGGAATTTTCTA+TGG - chr1_1:63836692-63836711 Msa0035610:three_prime_UTR 30.0%
! TCAATGGGTTTAAGAGAAAA+AGG + chr1_1:63836725-63836744 None:intergenic 30.0%
!! TGTGTTGTGAATTTTGATGT+TGG - chr1_1:63836914-63836933 Msa0035610:CDS 30.0%
!! GTGTTGTGAATTTTGATGTT+GGG - chr1_1:63836915-63836934 Msa0035610:CDS 30.0%
!! TGGATTTTGTGTTTGTTACA+TGG - chr1_1:63837029-63837048 Msa0035610:CDS 30.0%
! TGACCCTTTTCTTTTTATTC+AGG - chr1_1:63837181-63837200 Msa0035610:CDS 30.0%
TCAATTAATTGAGGGATTAG+TGG + chr1_1:63837383-63837402 None:intergenic 30.0%
CTTGATATGAGAATGTTACA+TGG - chr1_1:63837405-63837424 Msa0035610:CDS 30.0%
AATGAGATGAAAGTTTATGG+TGG - chr1_1:63837508-63837527 Msa0035610:CDS 30.0%
ATGAGATGAAAGTTTATGGT+GGG - chr1_1:63837509-63837528 Msa0035610:CDS 30.0%
CAAGGTTATTCTTAACTACA+AGG - chr1_1:63837566-63837585 Msa0035610:CDS 30.0%
!!! ATCAATTGGTTTTACTGCTA+AGG - chr1_1:63837631-63837650 Msa0035610:CDS 30.0%
GTTATTTATCAACCAAGTGA+TGG + chr1_1:63837792-63837811 None:intergenic 30.0%
!! TCACTTGGTTGATAAATAAC+CGG - chr1_1:63837792-63837811 Msa0035610:CDS 30.0%
TGTATACAGAAAAAAGTAGC+CGG + chr1_1:63837814-63837833 None:intergenic 30.0%
CTTTCTCAAACAAAATAGGA+TGG + chr1_1:63838022-63838041 None:intergenic 30.0%
!! CATCCTATTTTGTTTGAGAA+AGG - chr1_1:63838020-63838039 Msa0035610:CDS 30.0%
TTCACCTTTGTTCCTAAATT+TGG + chr1_1:63838096-63838115 None:intergenic 30.0%
AAGGTGAATCAGTATTCATA+AGG - chr1_1:63838108-63838127 Msa0035610:CDS 30.0%
!! AATTGCACTGTTTTTCTAGA+AGG - chr1_1:63838140-63838159 Msa0035610:CDS 30.0%
! AGTGGTCATTTAAAGTGTTT+AGG - chr1_1:63838179-63838198 Msa0035610:CDS 30.0%
! AAAGTGTTTAGGATCTGTAT+TGG - chr1_1:63838190-63838209 Msa0035610:CDS 30.0%
! TTTTATCAGAACATGTTTGC+AGG + chr1_1:63838232-63838251 None:intergenic 30.0%
AGAAAACAATGAAGCAAAAG+AGG + chr1_1:63838332-63838351 None:intergenic 30.0%
!!! ACTGATGTTTTGACTTAGTT+TGG + chr1_1:63838388-63838407 None:intergenic 30.0%
ACATGAACATGAACATCTAT+AGG + chr1_1:63838457-63838476 None:intergenic 30.0%
ACTCGTTAATCACATTATTG+AGG - chr1_1:63838545-63838564 Msa0035610:CDS 30.0%
TAATGTCAATATGAGTGAAC+AGG + chr1_1:63838621-63838640 None:intergenic 30.0%
TCATATTGACATTACAATCC+AGG - chr1_1:63838627-63838646 Msa0035610:CDS 30.0%
CATATTGACATTACAATCCA+GGG - chr1_1:63838628-63838647 Msa0035610:CDS 30.0%
AATTCTTTGTCTCATAGAAC+AGG + chr1_1:63838666-63838685 None:intergenic 30.0%
TATTGGAGTTTCAAAGAGTA+CGG - chr1_1:63838705-63838724 Msa0035610:intron 30.0%
CCATTATGCTCAAATACATA+AGG + chr1_1:63838793-63838812 None:intergenic 30.0%
CCTTATGTATTTGAGCATAA+TGG - chr1_1:63838790-63838809 Msa0035610:intron 30.0%
ATCACAGATATATATGATGC+CGG - chr1_1:63838899-63838918 Msa0035610:intron 30.0%
! TCCTTTATCATTGACTATGA+TGG - chr1_1:63839020-63839039 Msa0035610:intron 30.0%
! CCTTTATCATTGACTATGAT+GGG - chr1_1:63839021-63839040 Msa0035610:intron 30.0%
! TAAATAGGGTTTTTCTTGTG+AGG + chr1_1:63839146-63839165 None:intergenic 30.0%
TTATAACATTGACAAGAGCT+TGG - chr1_1:63839163-63839182 Msa0035610:intron 30.0%
TATAACATTGACAAGAGCTT+GGG - chr1_1:63839164-63839183 Msa0035610:intron 30.0%
TTTGTATTCATCAGCTGTAA+GGG + chr1_1:63839297-63839316 None:intergenic 30.0%
! CAAAGAAATTGAAGTACCAT+TGG - chr1_1:63839313-63839332 Msa0035610:intron 30.0%
TATGAATGAACCAATTGAGA+GGG + chr1_1:63839565-63839584 None:intergenic 30.0%
TTATGAATGAACCAATTGAG+AGG + chr1_1:63839566-63839585 None:intergenic 30.0%
! AATTGGTTCATTCATAACTC+TGG - chr1_1:63839569-63839588 Msa0035610:intron 30.0%
! ATTGGTTCATTCATAACTCT+GGG - chr1_1:63839570-63839589 Msa0035610:intron 30.0%
CATTATGCTTTATCTTACCT+CGG + chr1_1:63839694-63839713 None:intergenic 30.0%
CTTACTATAATCTTTGTAGC+TGG - chr1_1:63839734-63839753 Msa0035610:intron 30.0%
! CTCTCTAAATAATCGATTCA+AGG - chr1_1:63840024-63840043 Msa0035610:intron 30.0%
TTTCTCCTCTGTACTTTAAT+GGG + chr1_1:63840195-63840214 None:intergenic 30.0%
! TTTTCTCCTCTGTACTTTAA+TGG + chr1_1:63840196-63840215 None:intergenic 30.0%
!! ATTCAAAACTAGCTTTCAAG+AGG - chr1_1:63840272-63840291 Msa0035610:intron 30.0%
! ATGAAATTTTCGGAGATGTA+TGG - chr1_1:63840511-63840530 Msa0035610:intron 30.0%
TGGGATGTATAGTATTAGTA+TGG - chr1_1:63840580-63840599 Msa0035610:CDS 30.0%
!!! TTTTTTAGTTAGGTCTTTGG+TGG - chr1_1:63840617-63840636 Msa0035610:CDS 30.0%
AATCAGAATTACAGTTTCTG+AGG + chr1_1:63840922-63840941 None:intergenic 30.0%
AGAAACTGTAATTCTGATTC+TGG - chr1_1:63840923-63840942 Msa0035610:five_prime_UTR 30.0%
GAAACTGTAATTCTGATTCT+GGG - chr1_1:63840924-63840943 Msa0035610:five_prime_UTR 30.0%
AAACTGTAATTCTGATTCTG+GGG - chr1_1:63840925-63840944 Msa0035610:five_prime_UTR 30.0%
!!! GAAATTGATTTTGACTTGGT+TGG - chr1_1:63841003-63841022 Msa0035610:five_prime_UTR 30.0%
!! CTCTCTAGGAATTTTGACAA+AGG + chr1_1:63836278-63836297 None:intergenic 35.0%
GCATTTGACAGTTCATACAA+CGG + chr1_1:63836339-63836358 None:intergenic 35.0%
TTGTATGAACTGTCAAATGC+TGG - chr1_1:63836339-63836358 Msa0035610:three_prime_UTR 35.0%
!! CATTTTCTGAAAGGTGGTTT+GGG + chr1_1:63836393-63836412 None:intergenic 35.0%
CAAACCACCTTTCAGAAAAT+GGG - chr1_1:63836392-63836411 Msa0035610:three_prime_UTR 35.0%
GTGATATGAGTATGAAGTGT+TGG - chr1_1:63836486-63836505 Msa0035610:three_prime_UTR 35.0%
CGAAACCAGAAGAGAAAAAA+CGG + chr1_1:63836547-63836566 None:intergenic 35.0%
TAGCAATGGATCCAAAGAAA+AGG + chr1_1:63836589-63836608 None:intergenic 35.0%
GAAAGAGATTCATGAACAGA+AGG + chr1_1:63836638-63836657 None:intergenic 35.0%
TGTCATCATGACAACCAAAA+GGG + chr1_1:63836661-63836680 None:intergenic 35.0%
TTGTCATCATGACAACCAAA+AGG + chr1_1:63836662-63836681 None:intergenic 35.0%
!! AATTTTGATGTTGGGAGTGT+TGG - chr1_1:63836923-63836942 Msa0035610:CDS 35.0%
!!! TATGATTTTGGTTTGAGGGA+TGG - chr1_1:63837009-63837028 Msa0035610:CDS 35.0%
TTGTTACATGGAAGTGATGA+TGG - chr1_1:63837041-63837060 Msa0035610:CDS 35.0%
AAAGCACACCAGATATACAA+AGG + chr1_1:63837236-63837255 None:intergenic 35.0%
TTTGTATATCTGGTGTGCTT+TGG - chr1_1:63837235-63837254 Msa0035610:CDS 35.0%
! TTGTTCCTTGTGTACCTTTT+TGG - chr1_1:63837286-63837305 Msa0035610:CDS 35.0%
TTCATTGCCAAGTCAATGTT+TGG - chr1_1:63837351-63837370 Msa0035610:CDS 35.0%
! GTTGTATCCAAACATTGACT+TGG + chr1_1:63837361-63837380 None:intergenic 35.0%
CATAGATAGATATACGTGAG+TGG + chr1_1:63837701-63837720 None:intergenic 35.0%
TTACAACACAAACAACCAAG+TGG + chr1_1:63837850-63837869 None:intergenic 35.0%
! CAGTCTGATTTTTCTTCCTT+TGG - chr1_1:63837995-63838014 Msa0035610:CDS 35.0%
AACAAAATAGGATGGTCCAA+AGG + chr1_1:63838014-63838033 None:intergenic 35.0%
GGATTAACAGTTATGTACAG+TGG - chr1_1:63838161-63838180 Msa0035610:CDS 35.0%
AGGATCTGTATTGGAGAATA+AGG - chr1_1:63838199-63838218 Msa0035610:CDS 35.0%
AAGAATTCAATCACCATGCA+AGG - chr1_1:63838679-63838698 Msa0035610:intron 35.0%
! AGTTTCAAAGAGTACGGATA+AGG - chr1_1:63838711-63838730 Msa0035610:intron 35.0%
! GTTTCAAAGAGTACGGATAA+GGG - chr1_1:63838712-63838731 Msa0035610:intron 35.0%
! TTTTTCACGGAAACAATACC+TGG + chr1_1:63838816-63838835 None:intergenic 35.0%
AGATATATATGATGCCGGAA+GGG - chr1_1:63838904-63838923 Msa0035610:intron 35.0%
! TTTTCCAATTTCCACTGCAA+AGG + chr1_1:63838972-63838991 None:intergenic 35.0%
CCCATCATAGTCAATGATAA+AGG + chr1_1:63839024-63839043 None:intergenic 35.0%
! TTGACTATGATGGGAAGTAT+TGG - chr1_1:63839030-63839049 Msa0035610:intron 35.0%
! TTTTTCTTGTGAGGTTTCCA+TGG + chr1_1:63839137-63839156 None:intergenic 35.0%
GAAGGAAATCTTTACCGTAT+GGG - chr1_1:63839218-63839237 Msa0035610:intron 35.0%
CTTTGTATTCATCAGCTGTA+AGG + chr1_1:63839298-63839317 None:intergenic 35.0%
TGCTATACTCATTGTGCTAT+TGG - chr1_1:63839508-63839527 Msa0035610:intron 35.0%
! GCTATACTCATTGTGCTATT+GGG - chr1_1:63839509-63839528 Msa0035610:intron 35.0%
ATTGTATTGTCCCTCTCAAT+TGG - chr1_1:63839552-63839571 Msa0035610:intron 35.0%
GAATCTAACTTCCTTGTCTT+GGG - chr1_1:63839598-63839617 Msa0035610:intron 35.0%
!! ACTTTTGAAGAGAACGCATT+TGG + chr1_1:63839629-63839648 None:intergenic 35.0%
CGTTCTCTTCAAAAGTAAGA+CGG - chr1_1:63839633-63839652 Msa0035610:intron 35.0%
TAAAGCATAATGCTTGTGCT+AGG - chr1_1:63839702-63839721 Msa0035610:intron 35.0%
ATAATCTTTGTAGCTGGAGT+TGG - chr1_1:63839740-63839759 Msa0035610:intron 35.0%
TATTGACCTTTCAACGGATA+AGG + chr1_1:63839818-63839837 None:intergenic 35.0%
GAATCTAGATCACTAACTTC+CGG + chr1_1:63839968-63839987 None:intergenic 35.0%
AGTTAGTGATCTAGATTCAG+CGG - chr1_1:63839970-63839989 Msa0035610:intron 35.0%
! ACTGCTCGAGTTTTTATCAA+CGG + chr1_1:63840055-63840074 None:intergenic 35.0%
ACAGAGGAGAAAAATATGCA+CGG - chr1_1:63840203-63840222 Msa0035610:CDS 35.0%
AAATATGCACGGACACATAA+AGG - chr1_1:63840214-63840233 Msa0035610:CDS 35.0%
TGAATCAATAAATGCTGCAC+CGG + chr1_1:63840257-63840276 None:intergenic 35.0%
GACAGTTGATTATGTGAAAC+CGG - chr1_1:63840402-63840421 Msa0035610:intron 35.0%
! ATCGACACTTCAAAGTTTTC+CGG - chr1_1:63840433-63840452 Msa0035610:intron 35.0%
AAGTTTAGCCGATCGAAAAT+GGG - chr1_1:63840534-63840553 Msa0035610:intron 35.0%
AAATTATGCCTCAAAACCCT+TGG - chr1_1:63840796-63840815 Msa0035610:CDS 35.0%
AATTATGCCTCAAAACCCTT+GGG - chr1_1:63840797-63840816 Msa0035610:CDS 35.0%
!! TTGGAAGCATTAGGAATAGA+AGG - chr1_1:63840849-63840868 Msa0035610:CDS 35.0%
AAGCATTAGGAATAGAAGGA+TGG - chr1_1:63840853-63840872 Msa0035610:CDS 35.0%
AGCATTAGGAATAGAAGGAT+GGG - chr1_1:63840854-63840873 Msa0035610:CDS 35.0%
!!! GTTTTTGAGTCTCTCTCTCT+AGG + chr1_1:63836292-63836311 None:intergenic 40.0%
!! CCATTTTCTGAAAGGTGGTT+TGG + chr1_1:63836394-63836413 None:intergenic 40.0%
CCAAACCACCTTTCAGAAAA+TGG - chr1_1:63836391-63836410 Msa0035610:three_prime_UTR 40.0%
! ACCTTTCAGAAAATGGGTTC+CGG - chr1_1:63836398-63836417 Msa0035610:three_prime_UTR 40.0%
!! TGAGTATGAAGTGTTGGTGT+AGG - chr1_1:63836492-63836511 Msa0035610:three_prime_UTR 40.0%
! CATGAATCTCTTTCCCCTTT+TGG - chr1_1:63836644-63836663 Msa0035610:three_prime_UTR 40.0%
GTCATCATGACAACCAAAAG+GGG + chr1_1:63836660-63836679 None:intergenic 40.0%
TGGTTGTCATGATGACAATG+AGG - chr1_1:63836664-63836683 Msa0035610:three_prime_UTR 40.0%
GGTTGTCATGATGACAATGA+GGG - chr1_1:63836665-63836684 Msa0035610:three_prime_UTR 40.0%
ATGATGACAATGAGGGTTCT+TGG - chr1_1:63836672-63836691 Msa0035610:three_prime_UTR 40.0%
AATGAGGGTTCTTGGTCTAT+TGG - chr1_1:63836680-63836699 Msa0035610:three_prime_UTR 40.0%
GGGTCAGCAACAAAATTACT+TGG + chr1_1:63837167-63837186 None:intergenic 40.0%
! AGATGAAAGTTTATGGTGGG+TGG - chr1_1:63837512-63837531 Msa0035610:CDS 40.0%
!! GATGAAAGTTTATGGTGGGT+GGG - chr1_1:63837513-63837532 Msa0035610:CDS 40.0%
!! ATGAAAGTTTATGGTGGGTG+GGG - chr1_1:63837514-63837533 Msa0035610:CDS 40.0%
CAAAGAAACAGTAGACCACT+TGG - chr1_1:63837832-63837851 Msa0035610:CDS 40.0%
AGTAGCTCTTAGCATCACTA+AGG - chr1_1:63838405-63838424 Msa0035610:intron 40.0%
TAGCATCACTAAGGCTGAAA+AGG - chr1_1:63838414-63838433 Msa0035610:intron 40.0%
ATCACCATGCAAGGTGATAT+TGG - chr1_1:63838688-63838707 Msa0035610:intron 40.0%
AACTCCAATATCACCTTGCA+TGG + chr1_1:63838695-63838714 None:intergenic 40.0%
ACTAGGAATTGCCTTGAATG+AGG - chr1_1:63838750-63838769 Msa0035610:intron 40.0%
GAATTGCCTTGAATGAGGAT+TGG - chr1_1:63838755-63838774 Msa0035610:intron 40.0%
AAGATGCCAATCCTCATTCA+AGG + chr1_1:63838764-63838783 None:intergenic 40.0%
TGTATTTGAGCATAATGGCC+AGG - chr1_1:63838795-63838814 Msa0035610:intron 40.0%
CAGATATATATGATGCCGGA+AGG - chr1_1:63838903-63838922 Msa0035610:intron 40.0%
CTTTCCTTTGCAGTGGAAAT+TGG - chr1_1:63838965-63838984 Msa0035610:intron 40.0%
!!! GATGGGAAGTATTGGCTTTT+TGG - chr1_1:63839038-63839057 Msa0035610:intron 40.0%
!!! GAAGTATTGGCTTTTTGGCT+CGG - chr1_1:63839043-63839062 Msa0035610:intron 40.0%
!! GGTTTTGGCACCAAGAAAAA+CGG - chr1_1:63839074-63839093 Msa0035610:intron 40.0%
!! GTTTTGGCACCAAGAAAAAC+GGG - chr1_1:63839075-63839094 Msa0035610:intron 40.0%
CGAAGGAAATCTTTACCGTA+TGG - chr1_1:63839217-63839236 Msa0035610:intron 40.0%
AAATCTTTACCGTATGGGTC+AGG - chr1_1:63839223-63839242 Msa0035610:intron 40.0%
TTTGACTCAACAAAGCCCAA+TGG + chr1_1:63839332-63839351 None:intergenic 40.0%
!! GTTGGATTGGTGTTATGGAT+GGG - chr1_1:63839420-63839439 Msa0035610:intron 40.0%
!! TTGGATTGGTGTTATGGATG+GGG - chr1_1:63839421-63839440 Msa0035610:intron 40.0%
! TCATTCATAACTCTGGGAAG+AGG - chr1_1:63839576-63839595 Msa0035610:intron 40.0%
GGAATCTAACTTCCTTGTCT+TGG - chr1_1:63839597-63839616 Msa0035610:intron 40.0%
! ATTTGGTCTTTCCCAAGACA+AGG + chr1_1:63839612-63839631 None:intergenic 40.0%
TCTTACCTCGGAGAAATGTT+GGG + chr1_1:63839682-63839701 None:intergenic 40.0%
ATCTTACCTCGGAGAAATGT+TGG + chr1_1:63839683-63839702 None:intergenic 40.0%
GAAGAACCTTATCCGTTGAA+AGG - chr1_1:63839809-63839828 Msa0035610:intron 40.0%
!! TGCGAGTATTGACCTTTCAA+CGG + chr1_1:63839824-63839843 None:intergenic 40.0%
! CATACATCTTCAAGTTCCAC+AGG + chr1_1:63839880-63839899 None:intergenic 40.0%
! CTGCTCGAGTTTTTATCAAC+GGG + chr1_1:63840054-63840073 None:intergenic 40.0%
!! TTGAGCGAGGTTTTAATGTC+TGG - chr1_1:63840116-63840135 Msa0035610:intron 40.0%
GAGGATAGAATCCAACAATC+CGG + chr1_1:63840156-63840175 None:intergenic 40.0%
GGATTGTTGGATTCTATCCT+CGG - chr1_1:63840155-63840174 Msa0035610:CDS 40.0%
GGCTACAACATGATACTTAC+CGG - chr1_1:63840235-63840254 Msa0035610:intron 40.0%
!! AACTAGCTTTCAAGAGGTAC+TGG - chr1_1:63840278-63840297 Msa0035610:intron 40.0%
!! ACTAGCTTTCAAGAGGTACT+GGG - chr1_1:63840279-63840298 Msa0035610:intron 40.0%
CAAATGCTAGTTCATCGTCA+AGG - chr1_1:63840380-63840399 Msa0035610:intron 40.0%
TTGATTATGTGAAACCGGCT+TGG - chr1_1:63840407-63840426 Msa0035610:intron 40.0%
! TGATTATGTGAAACCGGCTT+GGG - chr1_1:63840408-63840427 Msa0035610:intron 40.0%
GAAGTTTAGCCGATCGAAAA+TGG - chr1_1:63840533-63840552 Msa0035610:intron 40.0%
AGTTTAGCCGATCGAAAATG+GGG - chr1_1:63840535-63840554 Msa0035610:intron 40.0%
ATTATGCCTCAAAACCCTTG+GGG - chr1_1:63840798-63840817 Msa0035610:CDS 40.0%
! GGATGGTTTGTGATGATGTT+GGG - chr1_1:63840820-63840839 Msa0035610:CDS 40.0%
! TGATGATGTTGGGATGCAAT+TGG - chr1_1:63840830-63840849 Msa0035610:CDS 40.0%
! AGTTTCTGAGGAATGTCTTC+AGG + chr1_1:63840910-63840929 None:intergenic 40.0%
!! GGAACCCATTTTCTGAAAGG+TGG + chr1_1:63836399-63836418 None:intergenic 45.0%
! ACCGGAACCCATTTTCTGAA+AGG + chr1_1:63836402-63836421 None:intergenic 45.0%
ATGGGTTCCGGTCAGATTAA+CGG - chr1_1:63836410-63836429 Msa0035610:three_prime_UTR 45.0%
GGCGGTTCTCATACTAACAA+CGG - chr1_1:63836443-63836462 Msa0035610:three_prime_UTR 45.0%
GGTTCTCATACTAACAACGG+TGG - chr1_1:63836446-63836465 Msa0035610:three_prime_UTR 45.0%
TCTCATACTAACAACGGTGG+TGG - chr1_1:63836449-63836468 Msa0035610:three_prime_UTR 45.0%
!! GTATGAAGTGTTGGTGTAGG+TGG - chr1_1:63836495-63836514 Msa0035610:three_prime_UTR 45.0%
! GGATCCATTGCTAGCTTCTA+TGG - chr1_1:63836596-63836615 Msa0035610:three_prime_UTR 45.0%
CCAACCATAGAAGCTAGCAA+TGG + chr1_1:63836603-63836622 None:intergenic 45.0%
! CCATTGCTAGCTTCTATGGT+TGG - chr1_1:63836600-63836619 Msa0035610:three_prime_UTR 45.0%
! TGTATCGAACGATGATAGCG+CGG - chr1_1:63837085-63837104 Msa0035610:CDS 45.0%
!! TGTGCATCTGTTTCTGATGC+TGG - chr1_1:63837137-63837156 Msa0035610:CDS 45.0%
!! TCCTTGTGTACCTTTTTGGC+TGG - chr1_1:63837290-63837309 Msa0035610:CDS 45.0%
!! GAATTTCTGGCCAGCCAAAA+AGG + chr1_1:63837303-63837322 None:intergenic 45.0%
GATGGCGCTAAAACTTCGAA+GGG + chr1_1:63837774-63837793 None:intergenic 45.0%
! TGATGGCGCTAAAACTTCGA+AGG + chr1_1:63837775-63837794 None:intergenic 45.0%
!! GAAGTTTTAGCGCCATCACT+TGG - chr1_1:63837777-63837796 Msa0035610:CDS 45.0%
ATCAGACTGCAGTGCTCAAT+AGG + chr1_1:63837984-63838003 None:intergenic 45.0%
!! ACAGGTAAAGAGTATCTCCC+TGG + chr1_1:63838648-63838667 None:intergenic 45.0%
! TCTCCTCTTTTACTCCCTTC+CGG + chr1_1:63838921-63838940 None:intergenic 45.0%
CATTGCACTTTCCTTTGCAG+TGG - chr1_1:63838958-63838977 Msa0035610:intron 45.0%
!!! CTTTTTGGCTCGGATCATAG+TGG - chr1_1:63839053-63839072 Msa0035610:intron 45.0%
AAAACGGGCAGTTGGAGATT+TGG - chr1_1:63839090-63839109 Msa0035610:intron 45.0%
TGGTACAGCAATTCACCTCT+CGG - chr1_1:63839110-63839129 Msa0035610:intron 45.0%
GGCAGGCCATTTAAATACGA+AGG - chr1_1:63839200-63839219 Msa0035610:intron 45.0%
AGGACTGTGGTGATACGTAT+GGG - chr1_1:63839243-63839262 Msa0035610:intron 45.0%
TAGCACCATTCCACGCATTT+CGG + chr1_1:63839361-63839380 None:intergenic 45.0%
!! TGGTGGTTGGATTGGTGTTA+TGG - chr1_1:63839415-63839434 Msa0035610:intron 45.0%
!! GGTTGGATTGGTGTTATGGA+TGG - chr1_1:63839419-63839438 Msa0035610:intron 45.0%
! TTCCTTCTGGAGACTCAATC+CGG - chr1_1:63839450-63839469 Msa0035610:intron 45.0%
AGCATAATGCTTGTGCTAGG+AGG - chr1_1:63839705-63839724 Msa0035610:intron 45.0%
GCATAATGCTTGTGCTAGGA+GGG - chr1_1:63839706-63839725 Msa0035610:intron 45.0%
! TTCTGTGTCTGAGATCGTTG+TGG - chr1_1:63839922-63839941 Msa0035610:intron 45.0%
ATCGTTGTGGTGTGGAACAA+GGG - chr1_1:63839935-63839954 Msa0035610:intron 45.0%
CTAGATCACTAACTTCCGGA+GGG + chr1_1:63839964-63839983 None:intergenic 45.0%
TCTAGATCACTAACTTCCGG+AGG + chr1_1:63839965-63839984 None:intergenic 45.0%
TGATCTAGATTCAGCGGTAC+CGG - chr1_1:63839976-63839995 Msa0035610:intron 45.0%
TAATGTCGTCATCGAGCTCA+AGG + chr1_1:63840078-63840097 None:intergenic 45.0%
! ACATGTGATGATGTTGAGCG+AGG - chr1_1:63840103-63840122 Msa0035610:intron 45.0%
TAGAATCCAACAATCCGGTC+AGG + chr1_1:63840151-63840170 None:intergenic 45.0%
TTCTATCCTCGGCTTATTGC+CGG - chr1_1:63840166-63840185 Msa0035610:CDS 45.0%
!! TCTGTACTTTAATGGGCTCC+CGG + chr1_1:63840188-63840207 None:intergenic 45.0%
!! CTAGCTTTCAAGAGGTACTG+GGG - chr1_1:63840280-63840299 Msa0035610:intron 45.0%
GATAATGCACCTTCGTGTTG+CGG + chr1_1:63840471-63840490 None:intergenic 45.0%
! GTCGAATCCCCATTTTCGAT+CGG + chr1_1:63840545-63840564 None:intergenic 45.0%
GAAAATGGGGATTCGACAGT+AGG - chr1_1:63840548-63840567 Msa0035610:intron 45.0%
TTATGCCTCAAAACCCTTGG+GGG - chr1_1:63840799-63840818 Msa0035610:CDS 45.0%
! GGGATGGTTTGTGATGATGT+TGG - chr1_1:63840819-63840838 Msa0035610:CDS 45.0%
!! GGGATGCAATTGGAAGCATT+AGG - chr1_1:63840840-63840859 Msa0035610:CDS 45.0%
GGAATAGAAGGATGGGCAAA+TGG - chr1_1:63840861-63840880 Msa0035610:CDS 45.0%
!!! TTTTTTTTTTTTTTTTGAAT+TGG - chr1_1:63836975-63836994 Msa0035610:CDS 5.0%
!!! TTTTTTTTTTTTTTTGAATT+GGG - chr1_1:63836976-63836995 Msa0035610:CDS 5.0%
AGAGCCACCGCGTTACAAAT+GGG + chr1_1:63836368-63836387 None:intergenic 50.0%
ACAGATGCACAAGTCACCAC+AGG + chr1_1:63837128-63837147 None:intergenic 50.0%
! GCCAGCCAAAAAGGTACACA+AGG + chr1_1:63837294-63837313 None:intergenic 50.0%
! TTGAGGTGTCTCGAGTTCCT+AGG - chr1_1:63838562-63838581 Msa0035610:CDS 50.0%
GTACGGATAAGGGAGCAACA+TGG - chr1_1:63838722-63838741 Msa0035610:intron 50.0%
ATGCCGGAAGGGAGTAAAAG+AGG - chr1_1:63838915-63838934 Msa0035610:intron 50.0%
! GGCTCGGATCATAGTGGTTT+TGG - chr1_1:63839059-63839078 Msa0035610:intron 50.0%
CACCAAGAAAAACGGGCAGT+TGG - chr1_1:63839082-63839101 Msa0035610:intron 50.0%
!! CTCCAACTGCCCGTTTTTCT+TGG + chr1_1:63839087-63839106 None:intergenic 50.0%
CAGGACTGTGGTGATACGTA+TGG - chr1_1:63839242-63839261 Msa0035610:intron 50.0%
GTGGTGATACGTATGGGAGA+CGG - chr1_1:63839249-63839268 Msa0035610:intron 50.0%
TGGTGATACGTATGGGAGAC+GGG - chr1_1:63839250-63839269 Msa0035610:intron 50.0%
CAAACAAGAGCCGAAATGCG+TGG - chr1_1:63839348-63839367 Msa0035610:intron 50.0%
AAGAGCCGAAATGCGTGGAA+TGG - chr1_1:63839353-63839372 Msa0035610:intron 50.0%
GACGTTGGGCATCTAAGTGA+TGG + chr1_1:63839388-63839407 None:intergenic 50.0%
ACACCAATCCAACCACCAGA+CGG + chr1_1:63839413-63839432 None:intergenic 50.0%
! GTGCTATTGGGTGTGTTGCT+TGG - chr1_1:63839521-63839540 Msa0035610:intron 50.0%
CTCGGAGAAATGTTGGGACT+CGG + chr1_1:63839676-63839695 None:intergenic 50.0%
GGAGTTGGATTGATGTGCGT+AGG - chr1_1:63839755-63839774 Msa0035610:intron 50.0%
! TGTCTGAGATCGTTGTGGTG+TGG - chr1_1:63839927-63839946 Msa0035610:intron 50.0%
GATCGTTGTGGTGTGGAACA+AGG - chr1_1:63839934-63839953 Msa0035610:intron 50.0%
!! TAGATTCAGCGGTACCGGTA+AGG - chr1_1:63839981-63840000 Msa0035610:intron 50.0%
TCCTCTACCCTGATCCTTAC+CGG + chr1_1:63839998-63840017 None:intergenic 50.0%
CAACATCCTGACCGGATTGT+TGG - chr1_1:63840142-63840161 Msa0035610:CDS 50.0%
TCTATCCTCGGCTTATTGCC+GGG - chr1_1:63840167-63840186 Msa0035610:CDS 50.0%
GGGAGCCCATTAAAGTACAG+AGG - chr1_1:63840187-63840206 Msa0035610:CDS 50.0%
!! TTTCAAGAGGTACTGGGGAG+AGG - chr1_1:63840285-63840304 Msa0035610:intron 50.0%
AGAGGAAGCTAAGCAAGGGA+GGG - chr1_1:63840303-63840322 Msa0035610:intron 50.0%
GGATTCGACAGTAGGAGAGA+TGG - chr1_1:63840556-63840575 Msa0035610:intron 50.0%
TCGACAGTAGGAGAGATGGT+TGG - chr1_1:63840560-63840579 Msa0035610:intron 50.0%
CGACAGTAGGAGAGATGGTT+GGG - chr1_1:63840561-63840580 Msa0035610:intron 50.0%
CATCACAAACCATCCCCCAA+GGG + chr1_1:63840815-63840834 None:intergenic 50.0%
TCATCACAAACCATCCCCCA+AGG + chr1_1:63840816-63840835 None:intergenic 50.0%
CTGGCGACCCATTTGTAACG+CGG - chr1_1:63836358-63836377 Msa0035610:three_prime_UTR 55.0%
CAGAGCCACCGCGTTACAAA+TGG + chr1_1:63836369-63836388 None:intergenic 55.0%
GGTTCCGGTCAGATTAACGG+CGG - chr1_1:63836413-63836432 Msa0035610:three_prime_UTR 55.0%
GTTCCGGTCAGATTAACGGC+GGG - chr1_1:63836414-63836433 Msa0035610:three_prime_UTR 55.0%
TTCCGGTCAGATTAACGGCG+GGG - chr1_1:63836415-63836434 Msa0035610:three_prime_UTR 55.0%
TACCCCGCCGTTAATCTGAC+CGG + chr1_1:63836420-63836439 None:intergenic 55.0%
GTCACCACAGGATTCGCTAC+CGG + chr1_1:63837116-63837135 None:intergenic 55.0%
!! TATGGTGGGTGGGGTTAGTG+AGG - chr1_1:63837523-63837542 Msa0035610:CDS 55.0%
GGAGCAACATGGCAGCAACT+AGG - chr1_1:63838733-63838752 Msa0035610:intron 55.0%
GCAATTCACCTCTCGGTCCA+TGG - chr1_1:63839117-63839136 Msa0035610:intron 55.0%
TGAGGTTTCCATGGACCGAG+AGG + chr1_1:63839128-63839147 None:intergenic 55.0%
AAGAGCTTGGGAGCTCGCAA+TGG - chr1_1:63839176-63839195 Msa0035610:intron 55.0%
TACCGTATGGGTCAGGACTG+TGG - chr1_1:63839230-63839249 Msa0035610:intron 55.0%
CACCACAGTCCTGACCCATA+CGG + chr1_1:63839235-63839254 None:intergenic 55.0%
ACCACCAGACGGAAGACGTT+GGG + chr1_1:63839402-63839421 None:intergenic 55.0%
AACCACCAGACGGAAGACGT+TGG + chr1_1:63839403-63839422 None:intergenic 55.0%
AACGTCTTCCGTCTGGTGGT+TGG - chr1_1:63839402-63839421 Msa0035610:intron 55.0%
CTTCCGTCTGGTGGTTGGAT+TGG - chr1_1:63839407-63839426 Msa0035610:intron 55.0%
GATGGGGATCGTGTTCCTTC+TGG - chr1_1:63839437-63839456 Msa0035610:intron 55.0%
! CTTCTGGAGACTCAATCCGG+CGG - chr1_1:63839453-63839472 Msa0035610:intron 55.0%
AGACTCAATCCGGCGGTTCA+TGG - chr1_1:63839460-63839479 Msa0035610:intron 55.0%
TCAATCCGGCGGTTCATGGT+TGG - chr1_1:63839464-63839483 Msa0035610:intron 55.0%
CACAACCAACCATGAACCGC+CGG + chr1_1:63839472-63839491 None:intergenic 55.0%
! ATGTTGGGACTCGGTTCACG+CGG + chr1_1:63839667-63839686 None:intergenic 55.0%
CGAGTCCCAACATTTCTCCG+AGG - chr1_1:63839674-63839693 Msa0035610:intron 55.0%
GTGGAACAAGGGAATCCCTC+CGG - chr1_1:63839946-63839965 Msa0035610:intron 55.0%
!! AGCGGTACCGGTAAGGATCA+GGG - chr1_1:63839988-63840007 Msa0035610:intron 55.0%
ACCGGTAAGGATCAGGGTAG+AGG - chr1_1:63839994-63840013 Msa0035610:intron 55.0%
TCTGGCGTCAACATCCTGAC+CGG - chr1_1:63840134-63840153 Msa0035610:CDS 55.0%
TGGGGAGAGGAAGCTAAGCA+AGG - chr1_1:63840298-63840317 Msa0035610:intron 55.0%
GGGGAGAGGAAGCTAAGCAA+GGG - chr1_1:63840299-63840318 Msa0035610:intron 55.0%
GAGAGGAAGCTAAGCAAGGG+AGG - chr1_1:63840302-63840321 Msa0035610:intron 55.0%
AGCTAAGCAAGGGAGGGAAG+TGG - chr1_1:63840309-63840328 Msa0035610:intron 55.0%
TAAGCAAGGGAGGGAAGTGG+TGG - chr1_1:63840312-63840331 Msa0035610:intron 55.0%
!! GAAGTGTCGATAGCCCAAGC+CGG + chr1_1:63840424-63840443 None:intergenic 55.0%
! AGCGATTAGCCGCAACACGA+AGG - chr1_1:63840459-63840478 Msa0035610:intron 55.0%
! ACCATCCCCCAAGGGTTTTG+AGG + chr1_1:63840807-63840826 None:intergenic 55.0%
GCGACCCATTTGTAACGCGG+TGG - chr1_1:63836361-63836380 Msa0035610:three_prime_UTR 60.0%
GGTCAGATTAACGGCGGGGT+AGG - chr1_1:63836419-63836438 Msa0035610:three_prime_UTR 60.0%
CAGATTAACGGCGGGGTAGG+CGG - chr1_1:63836422-63836441 Msa0035610:three_prime_UTR 60.0%
! CGAACGATGATAGCGCGGCT+TGG - chr1_1:63837090-63837109 Msa0035610:CDS 60.0%
TTGGCCGGTAGCGAATCCTG+TGG - chr1_1:63837109-63837128 Msa0035610:CDS 60.0%
AGCTTGGGAGCTCGCAATGG+AGG - chr1_1:63839179-63839198 Msa0035610:intron 60.0%
GATGCCCAACGTCTTCCGTC+TGG - chr1_1:63839395-63839414 Msa0035610:intron 60.0%
CGCCGGATTGAGTCTCCAGA+AGG + chr1_1:63839455-63839474 None:intergenic 60.0%
! TGTTGGGACTCGGTTCACGC+GGG + chr1_1:63839666-63839685 None:intergenic 60.0%
TGACCTACGATGCTCGCCTG+TGG - chr1_1:63839861-63839880 Msa0035610:intron 60.0%
! GTTCCACAGGCGAGCATCGT+AGG + chr1_1:63839867-63839886 None:intergenic 60.0%
!! CAGCGGTACCGGTAAGGATC+AGG - chr1_1:63839987-63840006 Msa0035610:intron 60.0%
GTTGCGGCTAATCGCTGCAC+CGG + chr1_1:63840455-63840474 None:intergenic 60.0%
GCCTCAAAACCCTTGGGGGA+TGG - chr1_1:63840803-63840822 Msa0035610:CDS 60.0%
ATTAACGGCGGGGTAGGCGG+CGG - chr1_1:63836425-63836444 Msa0035610:three_prime_UTR 65.0%
! CGATGATAGCGCGGCTTGGC+CGG - chr1_1:63837094-63837113 Msa0035610:CDS 65.0%
TGGGAGCTCGCAATGGAGGC+AGG - chr1_1:63839183-63839202 Msa0035610:intron 65.0%
GCCCAACGTCTTCCGTCTGG+TGG - chr1_1:63839398-63839417 Msa0035610:intron 65.0%
GGGCTCCCGGCAATAAGCCG+AGG + chr1_1:63840175-63840194 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 63836239 63841080 63836239 ID=Msa0035610;Name=Msa0035610
chr1_1 mRNA 63836239 63841080 63836239 ID=Msa0035610-mRNA-1;Parent=Msa0035610;Name=Msa0035610-mRNA-1;_AED=0.01;_eAED=0.01;_QI=171|1|1|1|1|1|4|489|771
chr1_1 exon 63836239 63838413 63836239 ID=Msa0035610-mRNA-1:exon:20387;Parent=Msa0035610-mRNA-1
chr1_1 exon 63838503 63838670 63838503 ID=Msa0035610-mRNA-1:exon:20386;Parent=Msa0035610-mRNA-1
chr1_1 exon 63840117 63840239 63840117 ID=Msa0035610-mRNA-1:exon:20385;Parent=Msa0035610-mRNA-1
chr1_1 exon 63840571 63841080 63840571 ID=Msa0035610-mRNA-1:exon:20384;Parent=Msa0035610-mRNA-1
chr1_1 five_prime_UTR 63840910 63841080 63840910 ID=Msa0035610-mRNA-1:five_prime_utr;Parent=Msa0035610-mRNA-1
chr1_1 CDS 63840571 63840909 63840571 ID=Msa0035610-mRNA-1:cds;Parent=Msa0035610-mRNA-1
chr1_1 CDS 63840117 63840239 63840117 ID=Msa0035610-mRNA-1:cds;Parent=Msa0035610-mRNA-1
chr1_1 CDS 63838503 63838670 63838503 ID=Msa0035610-mRNA-1:cds;Parent=Msa0035610-mRNA-1
chr1_1 CDS 63836728 63838413 63836728 ID=Msa0035610-mRNA-1:cds;Parent=Msa0035610-mRNA-1
chr1_1 three_prime_UTR 63836239 63836727 63836239 ID=Msa0035610-mRNA-1:three_prime_utr;Parent=Msa0035610-mRNA-1
Gene Sequence

>Msa0035610

ATGGGTTCCGGTCAGATTAACGGCGGGGTAGGCGGCGGTTCTCATACTAACAACGGTGGTGGTAGTAACAGTTGTTGTGATATGAGTATGAAGTGTTGGTGTAGGTGGAGATTAGAAAATCAACACTACTATAACCGTTTTTTCTCTTCTGGTTTCGTTTTCTTCTTTGCTTGTTTCCTTTTCTTTGGATCCATTGCTAGCTTCTATGGTTGGCTTTCTTTTTCTCCTTCTGTTCATGAATCTCTTTCCCCTTTTGGTTGTCATGATGACAATGAGGGTTCTTGGTCTATTGGAATTTTCTATGGTGATTCTCCTTTTTCTCTTAAACCCATTGAATTTTCGAATGTATCGAACGATGATAGCGCGGCTTGGCCGGTAGCGAATCCTGTGGTGACTTGTGCATCTGTTTCTGATGCTGGTTTTCCAAGTAATTTTGTTGCTGACCCTTTTCTTTTTATTCAGGGAGATACTCTTTACCTGTTCTATGAGACAAAGAATTCAATCACCATGCAAGGTGATATTGGAGTTTCAAAGAGTACGGATAAGGGAGCAACATGGCAGCAACTAGGAATTGCCTTGAATGAGGATTGGCATCTTTCTTATCCTTATGTATTTGAGCATAATGGCCAGATATATATGATGCCGGAAGGGAGTAAAAGAGGAGATCTTCGTCTGTACAGAGCATTGCACTTTCCTTTGCAGTGGAAATTGGAAAAAGTTCTCGTAGAAAAGCCCCTTATTGATTCCTTTATCATTGACTATGATGGGAAGTATTGGCTTTTTGGCTCGGATCATAGTGGTTTTGGCACCAAGAAAAACGGGCAGTTGGAGATTTGGTACAGCAATTCACCTCTCGGTCCATGGAAACCTCACAAGAAAAACCCTATTTATAACATTGACAAGAGCTTGGGAGCTCGCAATGGAGGCAGGCCATTTAAATACGAAGGAAATCTTTACCGTATGGGTCAGGACTGTGGTGATACGTATGGGAGACGGGTGCGTGCTTTTCAGATAGAAACCCTTACAGCTGATGAATACAAAGAAATTGAAGTACCATTGGGCTTTGTTGAGTCAAACAAGAGCCGAAATGCGTGGAATGGTGCTAGATACCATCACTTAGATGCCCAACGTCTTCCGTCTGGTGGTTGGATTGGTGTTATGGATGGGGATCGTGTTCCTTCTGGAGACTCAATCCGGCGGTTCATGGTTGGTTGTGCTTCTGTTGCAGTCGCTGCTATACTCATTGTGCTATTGGGTGTGTTGCTTGGTTTTGTGAATTGTATTGTCCCTCTCAATTGGTTCATTCATAACTCTGGGAAGAGGAATCTAACTTCCTTGTCTTGGGAAAGACCAAATGCGTTCTCTTCAAAAGTAAGACGGTTCTGCACCCGCGTGAACCGAGTCCCAACATTTCTCCGAGGTAAGATAAAGCATAATGCTTGTGCTAGGAGGGTTATTCTTACTATAATCTTTGTAGCTGGAGTTGGATTGATGTGCGTAGGATTTAAAAATATTTATGGTGGTAATGGTTCAGAAGAACCTTATCCGTTGAAAGGTCAATACTCGCAGTTCACGTTATTGACAATGACCTACGATGCTCGCCTGTGGAACTTGAAGATGTATGTGAAACATTACTCGAGATGCTCTTCTGTGTCTGAGATCGTTGTGGTGTGGAACAAGGGAATCCCTCCGGAAGTTAGTGATCTAGATTCAGCGGTACCGGTAAGGATCAGGGTAGAGGAGAAAAACTCTCTAAATAATCGATTCAAGGAAGACCCGTTGATAAAAACTCGAGCAGTCCTTGAGCTCGATGACGACATTATGATGACATGTGATGATGTTGAGCGAGGTTTTAATGTCTGGCGTCAACATCCTGACCGGATTGTTGGATTCTATCCTCGGCTTATTGCCGGGAGCCCATTAAAGTACAGAGGAGAAAAATATGCACGGACACATAAAGGCTACAACATGATACTTACCGGTGCAGCATTTATTGATTCAAAACTAGCTTTCAAGAGGTACTGGGGAGAGGAAGCTAAGCAAGGGAGGGAAGTGGTGGACAAGTTATTTAACTGTGAAGATGTGCTTTTGAATTACTTGTATGCAAATGCTAGTTCATCGTCAAGGACAGTTGATTATGTGAAACCGGCTTGGGCTATCGACACTTCAAAGTTTTCCGGTGCAGCGATTAGCCGCAACACGAAGGTGCATTATCAATTGAGAAGCAATTGTCTAATGAAATTTTCGGAGATGTATGGAAGTTTAGCCGATCGAAAATGGGGATTCGACAGTAGGAGAGATGGTTGGGATGTATAG
Protein sequence

>Msa0035610

MGSGQINGGVGGGSHTNNGGGSNSCCDMSMKCWCRWRLENQHYYNRFFSSGFVFFFACFLFFGSIASFYGWLSFSPSVHESLSPFGCHDDNEGSWSIGIFYGDSPFSLKPIEFSNVSNDDSAAWPVANPVVTCASVSDAGFPSNFVADPFLFIQGDTLYLFYETKNSITMQGDIGVSKSTDKGATWQQLGIALNEDWHLSYPYVFEHNGQIYMMPEGSKRGDLRLYRALHFPLQWKLEKVLVEKPLIDSFIIDYDGKYWLFGSDHSGFGTKKNGQLEIWYSNSPLGPWKPHKKNPIYNIDKSLGARNGGRPFKYEGNLYRMGQDCGDTYGRRVRAFQIETLTADEYKEIEVPLGFVESNKSRNAWNGARYHHLDAQRLPSGGWIGVMDGDRVPSGDSIRRFMVGCASVAVAAILIVLLGVLLGFVNCIVPLNWFIHNSGKRNLTSLSWERPNAFSSKVRRFCTRVNRVPTFLRGKIKHNACARRVILTIIFVAGVGLMCVGFKNIYGGNGSEEPYPLKGQYSQFTLLTMTYDARLWNLKMYVKHYSRCSSVSEIVVVWNKGIPPEVSDLDSAVPVRIRVEEKNSLNNRFKEDPLIKTRAVLELDDDIMMTCDDVERGFNVWRQHPDRIVGFYPRLIAGSPLKYRGEKYARTHKGYNMILTGAAFIDSKLAFKRYWGEEAKQGREVVDKLFNCEDVLLNYLYANASSSSRTVDYVKPAWAIDTSKFSGAAISRNTKVHYQLRSNCLMKFSEMYGSLADRKWGFDSRRDGWDV*