AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0178290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0178290 MtrunA17_Chr1g0186201 97.280 478 9 1 1 478 1 474 0.0 944
Msa0178290 MtrunA17_Chr3g0137321 92.050 478 38 0 1 478 1 478 0.0 906
Msa0178290 MtrunA17_Chr3g0137261 91.423 478 41 0 1 478 3 480 0.0 874
Msa0178290 MtrunA17_Chr3g0137341 92.050 478 34 2 1 478 1 474 0.0 872
Msa0178290 MtrunA17_Chr1g0192071 88.703 478 46 1 1 478 3 472 0.0 836
Msa0178290 MtrunA17_Chr3g0137271 91.405 477 37 2 1 477 1 473 0.0 836
Msa0178290 MtrunA17_Chr1g0212211 79.323 532 53 6 1 478 1 529 0.0 797
Msa0178290 MtrunA17_Chr8g0364981 83.575 414 42 4 52 464 1 389 0.0 624
Msa0178290 MtrunA17_Chr1g0184991 97.976 247 5 0 1 247 1 247 1.12e-180 505
Msa0178290 MtrunA17_Chr1g0184981 96.392 194 4 1 285 478 1 191 5.90e-132 379
Msa0178290 MtrunA17_Chr3g0137301 89.637 193 20 0 285 477 1 193 2.73e-122 355
Msa0178290 MtrunA17_Chr3g0137311 86.667 135 18 0 1 135 19 153 7.50e-82 250
Msa0178290 MtrunA17_Chr3g0110461 83.333 42 7 0 113 154 1 42 2.07e-16 73.2
Msa0178290 MtrunA17_Chr8g0364991 69.231 39 12 0 1 39 1 39 5.20e-13 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0178290 AT5G25260.1 75.105 474 106 2 1 474 1 462 0.0 738
Msa0178290 AT5G25250.1 75.053 473 104 2 1 473 1 459 0.0 727
Msa0178290 AT5G64870.1 71.398 472 124 1 2 473 3 463 0.0 660

Find 119 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGAATATTTCTCATATTT+AGG 0.103686 1_4:-65601117 Msa0178290:CDS
TTGAACCTAAGATTAGTATT+TGG 0.251111 1_4:-65599708 Msa0178290:CDS
CGGAATAACGGAAGGTTCTA+TGG 0.257659 1_4:-65599662 Msa0178290:CDS
CTGCTAAAGCTGTGGCTCTA+AGG 0.272737 1_4:-65600789 Msa0178290:CDS
AGGGATTACTTGATGATAAA+TGG 0.295084 1_4:-65599781 Msa0178290:CDS
TGCTAAATTACCAAAATAAA+AGG 0.295797 1_4:+65599483 None:intergenic
CATGCTGCCTCCTGCTTGGA+TGG 0.301626 1_4:-65599569 Msa0178290:CDS
ATGAATATTTCTCATATTTA+GGG 0.305111 1_4:-65601116 Msa0178290:CDS
TCCGACAAAAGCTCTTAATT+AGG 0.314591 1_4:-65599538 Msa0178290:exon
GTGAAGTTGGCTCGAAATCT+AGG 0.314615 1_4:-65601029 Msa0178290:CDS
TTTAGGTACAAGAGGCTAAC+TGG 0.315931 1_4:-65600035 Msa0178290:intron
TTAGTCCAAATACTAATCTT+AGG 0.318195 1_4:+65599703 None:intergenic
CTTCCCGCTGTCTTCACAAT+TGG 0.324959 1_4:-65601408 Msa0178290:CDS
ATTAGGAGGATGCAAGTATT+AGG 0.329639 1_4:-65599521 Msa0178290:three_prime_UTR
ACAAGGAGGGATTTAGAGTT+AGG 0.330276 1_4:-65600927 Msa0178290:CDS
TGTAAATCAATAACCCGAAT+TGG 0.349196 1_4:+65601175 None:intergenic
GAAACGACTACACAGCTCTA+AGG 0.361629 1_4:-65599801 Msa0178290:CDS
AAGATTAGTATTTGGACTAA+TGG 0.361897 1_4:-65599700 Msa0178290:CDS
CAATGCGAATGTTAAGCAAT+TGG 0.388576 1_4:-65601154 Msa0178290:CDS
CAACTCGAACTAAACCAATT+CGG 0.390858 1_4:-65601189 Msa0178290:CDS
ATCAAAATCAAACGATGTAC+AGG 0.393868 1_4:-65601602 Msa0178290:exon
TGGTCCTCGTGTTGACGATC+AGG 0.407219 1_4:-65601388 Msa0178290:CDS
TCAAACTTGCAAAGAAATCA+TGG 0.416941 1_4:-65601527 Msa0178290:CDS
AACTCGAACTAAACCAATTC+GGG 0.427281 1_4:-65601188 Msa0178290:CDS
TCCGAGTACCTGGTGATAAC+CGG 0.437519 1_4:-65601567 Msa0178290:CDS
GATGTCTTCGATTCCAGCTC+CGG 0.437947 1_4:+65601548 None:intergenic
GAAGAAAGCGGCTTGGACTA+AGG 0.439613 1_4:-65600836 Msa0178290:CDS
AGCAATTCTGTATGAGAAGA+AGG 0.462456 1_4:-65599983 Msa0178290:CDS
AAATCAGTTTAGCGTATTTG+AGG 0.472961 1_4:+65601358 None:intergenic
CAGGCATGCTGCCTCCTGCT+TGG 0.476491 1_4:-65599573 Msa0178290:CDS
ATGCTGCCTCCTGCTTGGAT+GGG 0.478140 1_4:-65599568 Msa0178290:CDS
TTTAGGGCAAAAGACGCAAA+TGG 0.491891 1_4:-65601100 Msa0178290:CDS
AAGACTGTCCATGAGCAAAC+AGG 0.492575 1_4:-65599592 Msa0178290:CDS
TGGAAGCAGCGAATCAAGCT+AGG 0.499263 1_4:-65601080 Msa0178290:CDS
TTGGACTAAGGCGGCTCAAG+TGG 0.501148 1_4:-65600824 Msa0178290:CDS
TGCTAAAGCTGTGGCTCTAA+GGG 0.501192 1_4:-65600788 Msa0178290:CDS
TGCTTCGATGACCATGGAAG+AGG 0.508530 1_4:-65601259 Msa0178290:CDS
AGCAAAAGCATCCGAGTACC+TGG 0.509436 1_4:-65601577 Msa0178290:CDS
GCAGCATGCCTGTTTGCTCA+TGG 0.516722 1_4:+65599584 None:intergenic
TAGAGTTAGGACTGAAGTGA+AGG 0.517399 1_4:-65600914 Msa0178290:CDS
GCTAAGATGAAAGGTGAAGT+TGG 0.517494 1_4:-65601042 Msa0178290:CDS
CATGTCAAGGAACTAGTTCA+AGG 0.517510 1_4:-65601312 Msa0178290:CDS
TACCTGGTGATAACCGGAGC+TGG 0.525647 1_4:-65601561 Msa0178290:CDS
ATGGGCATGAAAGAGGTTGC+TGG 0.526365 1_4:-65599643 Msa0178290:CDS
AAGCAATTGGTGGATGTGCC+TGG 0.526695 1_4:-65601141 Msa0178290:CDS
TCCTCTGAAAACCTCTTCCA+TGG 0.530446 1_4:+65601248 None:intergenic
GGCTCAAGTGGCTGAAGTCG+AGG 0.533715 1_4:-65600812 Msa0178290:CDS
ATTAGTATTTGGACTAATGG+AGG 0.534214 1_4:-65599697 Msa0178290:CDS
TTCCAGCTCCGGTTATCACC+AGG 0.538435 1_4:+65601559 None:intergenic
TGGTGGCATGTTTCAAGAGA+TGG 0.539247 1_4:-65599761 Msa0178290:CDS
GTTATTGCTATGCAGAGAGC+TGG 0.540557 1_4:-65600958 Msa0178290:CDS
GACAAAAGCTCTTAATTAGG+AGG 0.540934 1_4:-65599535 Msa0178290:exon
TCCGGTTATCACCAGGTACT+CGG 0.542656 1_4:+65601566 None:intergenic
GGCTGAGGCTAATTCTGAGT+TGG 0.544080 1_4:-65600863 Msa0178290:CDS
TGACAATGGAGGCGGAATAA+CGG 0.546090 1_4:-65599674 Msa0178290:CDS
GCAGAAGGGATTGTGACACT+TGG 0.546780 1_4:-65599868 Msa0178290:CDS
CACCGTCTTCGACCTCTCAC+CGG 0.548854 1_4:-65601484 Msa0178290:CDS
GATAAGGTTCCCATCCAAGC+AGG 0.550974 1_4:+65599559 None:intergenic
AATACACTTCTCAATGCACT+TGG 0.557121 1_4:-65599823 Msa0178290:CDS
AAGAGAGGCTGAAGTGGCTG+AGG 0.558698 1_4:-65600878 Msa0178290:CDS
TTGGATGGTTTAGGTACAAG+AGG 0.561865 1_4:-65600043 Msa0178290:intron
CAAACTTGCAAAGAAATCAT+GGG 0.562132 1_4:-65601526 Msa0178290:CDS
AGGTTCTATGGGCATGAAAG+AGG 0.562875 1_4:-65599650 Msa0178290:CDS
TGCGAATGTTAAGCAATTGG+TGG 0.563120 1_4:-65601151 Msa0178290:CDS
GGACCAATTGTGAAGACAGC+GGG 0.564372 1_4:+65601405 None:intergenic
CTCAACCTCACCTTGCAACT+CGG 0.566348 1_4:+65600762 None:intergenic
GGAATAACGGAAGGTTCTAT+GGG 0.567693 1_4:-65599661 Msa0178290:CDS
CCTCGCTGCTTCGATGACCA+TGG 0.570615 1_4:-65601265 Msa0178290:CDS
ACTTCGAAGGTATAGTTCAC+CGG 0.571447 1_4:+65601465 None:intergenic
AAGACGGTGCAAGATTGACC+AGG 0.574032 1_4:+65601498 None:intergenic
AGGTATAGTTCACCGGTGAG+AGG 0.574045 1_4:+65601472 None:intergenic
AGTTGCAAGGTGAGGTTGAG+AGG 0.575856 1_4:-65600759 Msa0178290:CDS
TTAGGTACAAGAGGCTAACT+GGG 0.579786 1_4:-65600034 Msa0178290:intron
TGAAGTTGGCTCGAAATCTA+GGG 0.579862 1_4:-65601028 Msa0178290:CDS
GTGACACTTGGGAATGCTCA+AGG 0.583871 1_4:-65599856 Msa0178290:CDS
TGGCGAAGAAGAAAGCGGCT+TGG 0.584288 1_4:-65600843 Msa0178290:CDS
TCAGTTTAGCGTATTTGAGG+AGG 0.587438 1_4:+65601361 None:intergenic
GAATCAAAGAGAGGCTGAAG+TGG 0.589954 1_4:-65600884 Msa0178290:CDS
AAACGACTACACAGCTCTAA+GGG 0.592700 1_4:-65599800 Msa0178290:CDS
CTAAGGGAAGCCGAGTTGCA+AGG 0.593610 1_4:-65600772 Msa0178290:CDS
CAGAAGGGATTGTGACACTT+GGG 0.598815 1_4:-65599867 Msa0178290:CDS
TCTGTATGAGAAGAAGGCAG+AGG 0.600808 1_4:-65599977 Msa0178290:CDS
ACTCATGGCTTGAACTTCGA+AGG 0.601319 1_4:+65601452 None:intergenic
AATGGAGGTGACAATGGAGG+CGG 0.607583 1_4:-65599682 Msa0178290:CDS
TGGACTAATGGAGGTGACAA+TGG 0.609237 1_4:-65599688 Msa0178290:CDS
GCTGGAGAGAGTGACAAGGA+GGG 0.609527 1_4:-65600940 Msa0178290:CDS
CTAGTTCAAGGAATCATCGA+AGG 0.612313 1_4:-65601300 Msa0178290:CDS
GTGGCAGAAGCTAAGATGAA+AGG 0.614706 1_4:-65601051 Msa0178290:CDS
AGCTGGAGAGAGTGACAAGG+AGG 0.627665 1_4:-65600941 Msa0178290:CDS
CACCGGTGAGAGGTCGAAGA+CGG 0.628279 1_4:+65601482 None:intergenic
AAGACAGCGGGAAGAACGAA+AGG 0.630029 1_4:+65601417 None:intergenic
GGAAGCAGCGAATCAAGCTA+GGG 0.630802 1_4:-65601079 Msa0178290:CDS
TAGTTCAAGGAATCATCGAA+GGG 0.630851 1_4:-65601299 Msa0178290:CDS
GTTGGCTCGAAATCTAGGGA+AGG 0.635413 1_4:-65601024 Msa0178290:CDS
ATCAATGCTGAGGCAGTACG+TGG 0.635980 1_4:-65599733 Msa0178290:CDS
TATGAGAAATATTCATGACC+AGG 0.636387 1_4:+65601123 None:intergenic
GAGAGCTGGAGAGAGTGACA+AGG 0.636874 1_4:-65600944 Msa0178290:CDS
TCAAAATCAAACGATGTACA+GGG 0.641066 1_4:-65601601 Msa0178290:exon
TAGTGTTGAGTATGAAACCA+AGG 0.644971 1_4:-65600683 Msa0178290:intron
GGAAGCCGAGTTGCAAGGTG+AGG 0.648282 1_4:-65600767 Msa0178290:CDS
TTGGCTCGAAATCTAGGGAA+GGG 0.650991 1_4:-65601023 Msa0178290:CDS
TGAGTTGGCGAAGAAGAAAG+CGG 0.653130 1_4:-65600848 Msa0178290:CDS
TAAACTCTCGAATCATGTCA+AGG 0.655320 1_4:-65601325 Msa0178290:CDS
TGGACAGTCTTAAACAGAGG+TGG 0.656626 1_4:+65599604 None:intergenic
GATTACTTGATGATAAATGG+TGG 0.658453 1_4:-65599778 Msa0178290:CDS
TCATGGACAGTCTTAAACAG+AGG 0.660499 1_4:+65599601 None:intergenic
AGTCGAGGCTGCTAAAGCTG+TGG 0.666475 1_4:-65600797 Msa0178290:CDS
AATGGAGGCGGAATAACGGA+AGG 0.668536 1_4:-65599670 Msa0178290:CDS
AAGGTTCCCATCCAAGCAGG+AGG 0.669932 1_4:+65599562 None:intergenic
ACTAATGGAGGTGACAATGG+AGG 0.677352 1_4:-65599685 Msa0178290:CDS
TGATTCGAGAGTTTATCATG+AGG 0.680428 1_4:+65601333 None:intergenic
GATGGCTAAGATCAATGCTG+AGG 0.682349 1_4:-65599743 Msa0178290:CDS
GAATCAAGCTAGGGTTGACG+TGG 0.682564 1_4:-65601070 Msa0178290:CDS
CTTTCCTGATCGTCAACACG+AGG 0.689163 1_4:+65601384 None:intergenic
AGACGGTGCAAGATTGACCA+GGG 0.716272 1_4:+65601499 None:intergenic
AGTTCAAGGAATCATCGAAG+GGG 0.721843 1_4:-65601298 Msa0178290:CDS
AGGACCAATTGTGAAGACAG+CGG 0.726189 1_4:+65601404 None:intergenic
CCATGGTCATCGAAGCAGCG+AGG 0.728643 1_4:+65601265 None:intergenic
GAAAGCGGCTTGGACTAAGG+CGG 0.747622 1_4:-65600833 Msa0178290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATTAATAAATGAAAGA+AGG + chr1_4:65600443-65600462 None:intergenic 10.0%
!!! AATAATACTTTAATATCTTT+TGG - chr1_4:65600495-65600514 Msa0178290:intron 10.0%
!! AATAATTAATAAATGAAAGA+AGG + chr1_4:65600443-65600462 None:intergenic 10.0%
!!! AATAATACTTTAATATCTTT+TGG - chr1_4:65600495-65600514 Msa0178290:intron 10.0%
!! ATGAATATTTCTCATATTTA+GGG - chr1_4:65599963-65599982 Msa0178290:CDS 15.0%
!! CATTATAAAACTAAATCATA+TGG - chr1_4:65600669-65600688 Msa0178290:intron 15.0%
!!! TGTTCTAAATTAATTTTGTT+AGG - chr1_4:65600725-65600744 Msa0178290:CDS 15.0%
!!! AATGTTTATTTTTTAAGTAC+TGG - chr1_4:65601005-65601024 Msa0178290:CDS 15.0%
!! ATGAATATTTCTCATATTTA+GGG - chr1_4:65599963-65599982 Msa0178290:CDS 15.0%
!! CATTATAAAACTAAATCATA+TGG - chr1_4:65600669-65600688 Msa0178290:intron 15.0%
!!! TGTTCTAAATTAATTTTGTT+AGG - chr1_4:65600725-65600744 Msa0178290:CDS 15.0%
!!! AATGTTTATTTTTTAAGTAC+TGG - chr1_4:65601005-65601024 Msa0178290:CDS 15.0%
!! CATGAATATTTCTCATATTT+AGG - chr1_4:65599962-65599981 Msa0178290:CDS 20.0%
!!! TTAATATGTTATATGGACTA+TGG - chr1_4:65600593-65600612 Msa0178290:intron 20.0%
!!! TATGGAATAGTCAAAATTTT+TGG - chr1_4:65600611-65600630 Msa0178290:intron 20.0%
!! TTAAAAAAATTGACAAGGTT+TGG + chr1_4:65600920-65600939 None:intergenic 20.0%
!! TCATGTTAAAAAAATTGACA+AGG + chr1_4:65600925-65600944 None:intergenic 20.0%
!! TGCTAAATTACCAAAATAAA+AGG + chr1_4:65601599-65601618 None:intergenic 20.0%
!! CATGAATATTTCTCATATTT+AGG - chr1_4:65599962-65599981 Msa0178290:CDS 20.0%
!!! TTAATATGTTATATGGACTA+TGG - chr1_4:65600593-65600612 Msa0178290:intron 20.0%
!!! TATGGAATAGTCAAAATTTT+TGG - chr1_4:65600611-65600630 Msa0178290:intron 20.0%
!! TTAAAAAAATTGACAAGGTT+TGG + chr1_4:65600920-65600939 None:intergenic 20.0%
!! TCATGTTAAAAAAATTGACA+AGG + chr1_4:65600925-65600944 None:intergenic 20.0%
!! TGCTAAATTACCAAAATAAA+AGG + chr1_4:65601599-65601618 None:intergenic 20.0%
!!! TCACTGTAGTTAAAGTTTTT+TGG - chr1_4:65600529-65600548 Msa0178290:intron 25.0%
! ACAAAATAATAGCAAGCAAA+GGG + chr1_4:65600776-65600795 None:intergenic 25.0%
!!! GCTATTATTTTGTGTACTTT+TGG - chr1_4:65600783-65600802 Msa0178290:CDS 25.0%
! AAAACAAAACGATTGACATA+TGG - chr1_4:65600847-65600866 Msa0178290:CDS 25.0%
! ATTGACATATGGTATGTAAA+TGG - chr1_4:65600858-65600877 Msa0178290:CDS 25.0%
! GAAGTAAAACATAACAAAGT+AGG - chr1_4:65600957-65600976 Msa0178290:CDS 25.0%
!!! TTAAGTACTGGTTGAAATTT+TGG - chr1_4:65601017-65601036 Msa0178290:CDS 25.0%
! TTGAACCTAAGATTAGTATT+TGG - chr1_4:65601371-65601390 Msa0178290:CDS 25.0%
! TTAGTCCAAATACTAATCTT+AGG + chr1_4:65601379-65601398 None:intergenic 25.0%
! AAGATTAGTATTTGGACTAA+TGG - chr1_4:65601379-65601398 Msa0178290:CDS 25.0%
!!! TCACTGTAGTTAAAGTTTTT+TGG - chr1_4:65600529-65600548 Msa0178290:intron 25.0%
! ACAAAATAATAGCAAGCAAA+GGG + chr1_4:65600776-65600795 None:intergenic 25.0%
!!! GCTATTATTTTGTGTACTTT+TGG - chr1_4:65600783-65600802 Msa0178290:CDS 25.0%
! AAAACAAAACGATTGACATA+TGG - chr1_4:65600847-65600866 Msa0178290:CDS 25.0%
! ATTGACATATGGTATGTAAA+TGG - chr1_4:65600858-65600877 Msa0178290:CDS 25.0%
! GAAGTAAAACATAACAAAGT+AGG - chr1_4:65600957-65600976 Msa0178290:CDS 25.0%
!!! TTAAGTACTGGTTGAAATTT+TGG - chr1_4:65601017-65601036 Msa0178290:CDS 25.0%
! TTGAACCTAAGATTAGTATT+TGG - chr1_4:65601371-65601390 Msa0178290:CDS 25.0%
! TTAGTCCAAATACTAATCTT+AGG + chr1_4:65601379-65601398 None:intergenic 25.0%
! AAGATTAGTATTTGGACTAA+TGG - chr1_4:65601379-65601398 Msa0178290:CDS 25.0%
! GTTTCAATTTTCTTGTCAAG+AGG - chr1_4:65599440-65599459 Msa0178290:three_prime_UTR 30.0%
ATCAAAATCAAACGATGTAC+AGG - chr1_4:65599477-65599496 Msa0178290:three_prime_UTR 30.0%
TCAAAATCAAACGATGTACA+GGG - chr1_4:65599478-65599497 Msa0178290:three_prime_UTR 30.0%
TCAAACTTGCAAAGAAATCA+TGG - chr1_4:65599552-65599571 Msa0178290:CDS 30.0%
CAAACTTGCAAAGAAATCAT+GGG - chr1_4:65599553-65599572 Msa0178290:CDS 30.0%
AAATCAGTTTAGCGTATTTG+AGG + chr1_4:65599724-65599743 None:intergenic 30.0%
TGTAAATCAATAACCCGAAT+TGG + chr1_4:65599907-65599926 None:intergenic 30.0%
TATGAGAAATATTCATGACC+AGG + chr1_4:65599959-65599978 None:intergenic 30.0%
AAGAAGGAGTTATATTTGCA+TGG + chr1_4:65600427-65600446 None:intergenic 30.0%
CACAAAATAATAGCAAGCAA+AGG + chr1_4:65600777-65600796 None:intergenic 30.0%
GGCAAATAGATTGAAGAATA+TGG - chr1_4:65600879-65600898 Msa0178290:CDS 30.0%
! AAAAATTGACAAGGTTTGGT+TGG + chr1_4:65600916-65600935 None:intergenic 30.0%
! GTTGAAATTTTGGATGGTTT+AGG - chr1_4:65601027-65601046 Msa0178290:CDS 30.0%
! AGGGATTACTTGATGATAAA+TGG - chr1_4:65601298-65601317 Msa0178290:CDS 30.0%
! GATTACTTGATGATAAATGG+TGG - chr1_4:65601301-65601320 Msa0178290:CDS 30.0%
ATTAGTATTTGGACTAATGG+AGG - chr1_4:65601382-65601401 Msa0178290:CDS 30.0%
! TCCTAATTAAGAGCTTTTGT+CGG + chr1_4:65601545-65601564 None:intergenic 30.0%
!! AGCAGCAATACCTTTTATTT+TGG - chr1_4:65601586-65601605 Msa0178290:CDS 30.0%
! GTTTCAATTTTCTTGTCAAG+AGG - chr1_4:65599440-65599459 Msa0178290:three_prime_UTR 30.0%
ATCAAAATCAAACGATGTAC+AGG - chr1_4:65599477-65599496 Msa0178290:three_prime_UTR 30.0%
TCAAAATCAAACGATGTACA+GGG - chr1_4:65599478-65599497 Msa0178290:three_prime_UTR 30.0%
TCAAACTTGCAAAGAAATCA+TGG - chr1_4:65599552-65599571 Msa0178290:CDS 30.0%
CAAACTTGCAAAGAAATCAT+GGG - chr1_4:65599553-65599572 Msa0178290:CDS 30.0%
AAATCAGTTTAGCGTATTTG+AGG + chr1_4:65599724-65599743 None:intergenic 30.0%
TGTAAATCAATAACCCGAAT+TGG + chr1_4:65599907-65599926 None:intergenic 30.0%
TATGAGAAATATTCATGACC+AGG + chr1_4:65599959-65599978 None:intergenic 30.0%
AAGAAGGAGTTATATTTGCA+TGG + chr1_4:65600427-65600446 None:intergenic 30.0%
CACAAAATAATAGCAAGCAA+AGG + chr1_4:65600777-65600796 None:intergenic 30.0%
GGCAAATAGATTGAAGAATA+TGG - chr1_4:65600879-65600898 Msa0178290:CDS 30.0%
! AAAAATTGACAAGGTTTGGT+TGG + chr1_4:65600916-65600935 None:intergenic 30.0%
! GTTGAAATTTTGGATGGTTT+AGG - chr1_4:65601027-65601046 Msa0178290:CDS 30.0%
! AGGGATTACTTGATGATAAA+TGG - chr1_4:65601298-65601317 Msa0178290:CDS 30.0%
! GATTACTTGATGATAAATGG+TGG - chr1_4:65601301-65601320 Msa0178290:CDS 30.0%
ATTAGTATTTGGACTAATGG+AGG - chr1_4:65601382-65601401 Msa0178290:CDS 30.0%
! TCCTAATTAAGAGCTTTTGT+CGG + chr1_4:65601545-65601564 None:intergenic 30.0%
!! AGCAGCAATACCTTTTATTT+TGG - chr1_4:65601586-65601605 Msa0178290:CDS 30.0%
! AAGAACGAAAGGCAGTTTTT+CGG + chr1_4:65599654-65599673 None:intergenic 35.0%
TGATTCGAGAGTTTATCATG+AGG + chr1_4:65599749-65599768 None:intergenic 35.0%
TAAACTCTCGAATCATGTCA+AGG - chr1_4:65599754-65599773 Msa0178290:CDS 35.0%
TAGTTCAAGGAATCATCGAA+GGG - chr1_4:65599780-65599799 Msa0178290:CDS 35.0%
CAACTCGAACTAAACCAATT+CGG - chr1_4:65599890-65599909 Msa0178290:CDS 35.0%
AACTCGAACTAAACCAATTC+GGG - chr1_4:65599891-65599910 Msa0178290:CDS 35.0%
CAATGCGAATGTTAAGCAAT+TGG - chr1_4:65599925-65599944 Msa0178290:CDS 35.0%
!! GGTTTTTGAGAATCAAAGAG+AGG - chr1_4:65600186-65600205 Msa0178290:intron 35.0%
! TAGTGTTGAGTATGAAACCA+AGG - chr1_4:65600396-65600415 Msa0178290:intron 35.0%
! ATATTTGCATGGACTAACCT+TGG + chr1_4:65600416-65600435 None:intergenic 35.0%
!!! GTACTGGTTGAAATTTTGGA+TGG - chr1_4:65601021-65601040 Msa0178290:CDS 35.0%
AGCAATTCTGTATGAGAAGA+AGG - chr1_4:65601096-65601115 Msa0178290:CDS 35.0%
GCTATACGCAAAGAAAAAAG+AGG - chr1_4:65601189-65601208 Msa0178290:CDS 35.0%
CAAAGAAAAAAGAGGCAGAA+GGG - chr1_4:65601197-65601216 Msa0178290:CDS 35.0%
AATACACTTCTCAATGCACT+TGG - chr1_4:65601256-65601275 Msa0178290:CDS 35.0%
! TTAAGAGCTTTTGTCGGATA+AGG + chr1_4:65601539-65601558 None:intergenic 35.0%
TCCGACAAAAGCTCTTAATT+AGG - chr1_4:65601541-65601560 Msa0178290:CDS 35.0%
GACAAAAGCTCTTAATTAGG+AGG - chr1_4:65601544-65601563 Msa0178290:CDS 35.0%
ATTAGGAGGATGCAAGTATT+AGG - chr1_4:65601558-65601577 Msa0178290:CDS 35.0%
! AAGAACGAAAGGCAGTTTTT+CGG + chr1_4:65599654-65599673 None:intergenic 35.0%
TGATTCGAGAGTTTATCATG+AGG + chr1_4:65599749-65599768 None:intergenic 35.0%
TAAACTCTCGAATCATGTCA+AGG - chr1_4:65599754-65599773 Msa0178290:CDS 35.0%
TAGTTCAAGGAATCATCGAA+GGG - chr1_4:65599780-65599799 Msa0178290:CDS 35.0%
CAACTCGAACTAAACCAATT+CGG - chr1_4:65599890-65599909 Msa0178290:CDS 35.0%
AACTCGAACTAAACCAATTC+GGG - chr1_4:65599891-65599910 Msa0178290:CDS 35.0%
CAATGCGAATGTTAAGCAAT+TGG - chr1_4:65599925-65599944 Msa0178290:CDS 35.0%
!! GGTTTTTGAGAATCAAAGAG+AGG - chr1_4:65600186-65600205 Msa0178290:intron 35.0%
! TAGTGTTGAGTATGAAACCA+AGG - chr1_4:65600396-65600415 Msa0178290:intron 35.0%
! ATATTTGCATGGACTAACCT+TGG + chr1_4:65600416-65600435 None:intergenic 35.0%
!!! GTACTGGTTGAAATTTTGGA+TGG - chr1_4:65601021-65601040 Msa0178290:CDS 35.0%
AGCAATTCTGTATGAGAAGA+AGG - chr1_4:65601096-65601115 Msa0178290:CDS 35.0%
GCTATACGCAAAGAAAAAAG+AGG - chr1_4:65601189-65601208 Msa0178290:CDS 35.0%
CAAAGAAAAAAGAGGCAGAA+GGG - chr1_4:65601197-65601216 Msa0178290:CDS 35.0%
AATACACTTCTCAATGCACT+TGG - chr1_4:65601256-65601275 Msa0178290:CDS 35.0%
! TTAAGAGCTTTTGTCGGATA+AGG + chr1_4:65601539-65601558 None:intergenic 35.0%
TCCGACAAAAGCTCTTAATT+AGG - chr1_4:65601541-65601560 Msa0178290:CDS 35.0%
GACAAAAGCTCTTAATTAGG+AGG - chr1_4:65601544-65601563 Msa0178290:CDS 35.0%
ATTAGGAGGATGCAAGTATT+AGG - chr1_4:65601558-65601577 Msa0178290:CDS 35.0%
! AAGAAATCATGGGTTTTCCC+TGG - chr1_4:65599563-65599582 Msa0178290:CDS 40.0%
! ACTTCGAAGGTATAGTTCAC+CGG + chr1_4:65599617-65599636 None:intergenic 40.0%
TCAGTTTAGCGTATTTGAGG+AGG + chr1_4:65599721-65599740 None:intergenic 40.0%
CATGTCAAGGAACTAGTTCA+AGG - chr1_4:65599767-65599786 Msa0178290:CDS 40.0%
CTAGTTCAAGGAATCATCGA+AGG - chr1_4:65599779-65599798 Msa0178290:CDS 40.0%
AGTTCAAGGAATCATCGAAG+GGG - chr1_4:65599781-65599800 Msa0178290:CDS 40.0%
TGCGAATGTTAAGCAATTGG+TGG - chr1_4:65599928-65599947 Msa0178290:CDS 40.0%
! TTTAGGGCAAAAGACGCAAA+TGG - chr1_4:65599979-65599998 Msa0178290:CDS 40.0%
GCTAAGATGAAAGGTGAAGT+TGG - chr1_4:65600037-65600056 Msa0178290:intron 40.0%
!! TGAAGTTGGCTCGAAATCTA+GGG - chr1_4:65600051-65600070 Msa0178290:intron 40.0%
GAATGCAGCAAAAATTGACG+CGG - chr1_4:65600090-65600109 Msa0178290:intron 40.0%
! ACAAGGAGGGATTTAGAGTT+AGG - chr1_4:65600152-65600171 Msa0178290:intron 40.0%
TAGAGTTAGGACTGAAGTGA+AGG - chr1_4:65600165-65600184 Msa0178290:intron 40.0%
AATGTGCCAAGTCTAAATCG+TGG - chr1_4:65600748-65600767 Msa0178290:CDS 40.0%
AGCAAGTGCTATGTTTCGTT+TGG - chr1_4:65600822-65600841 Msa0178290:CDS 40.0%
TTGGATGGTTTAGGTACAAG+AGG - chr1_4:65601036-65601055 Msa0178290:CDS 40.0%
TTTAGGTACAAGAGGCTAAC+TGG - chr1_4:65601044-65601063 Msa0178290:CDS 40.0%
TTAGGTACAAGAGGCTAACT+GGG - chr1_4:65601045-65601064 Msa0178290:CDS 40.0%
GCAAAGAAAAAAGAGGCAGA+AGG - chr1_4:65601196-65601215 Msa0178290:CDS 40.0%
! AAACGACTACACAGCTCTAA+GGG - chr1_4:65601279-65601298 Msa0178290:CDS 40.0%
! GGAATAACGGAAGGTTCTAT+GGG - chr1_4:65601418-65601437 Msa0178290:CDS 40.0%
TCATGGACAGTCTTAAACAG+AGG + chr1_4:65601481-65601500 None:intergenic 40.0%
! AAGAAATCATGGGTTTTCCC+TGG - chr1_4:65599563-65599582 Msa0178290:CDS 40.0%
! ACTTCGAAGGTATAGTTCAC+CGG + chr1_4:65599617-65599636 None:intergenic 40.0%
TCAGTTTAGCGTATTTGAGG+AGG + chr1_4:65599721-65599740 None:intergenic 40.0%
CATGTCAAGGAACTAGTTCA+AGG - chr1_4:65599767-65599786 Msa0178290:CDS 40.0%
CTAGTTCAAGGAATCATCGA+AGG - chr1_4:65599779-65599798 Msa0178290:CDS 40.0%
AGTTCAAGGAATCATCGAAG+GGG - chr1_4:65599781-65599800 Msa0178290:CDS 40.0%
TGCGAATGTTAAGCAATTGG+TGG - chr1_4:65599928-65599947 Msa0178290:CDS 40.0%
! TTTAGGGCAAAAGACGCAAA+TGG - chr1_4:65599979-65599998 Msa0178290:CDS 40.0%
GCTAAGATGAAAGGTGAAGT+TGG - chr1_4:65600037-65600056 Msa0178290:intron 40.0%
!! TGAAGTTGGCTCGAAATCTA+GGG - chr1_4:65600051-65600070 Msa0178290:intron 40.0%
GAATGCAGCAAAAATTGACG+CGG - chr1_4:65600090-65600109 Msa0178290:intron 40.0%
! ACAAGGAGGGATTTAGAGTT+AGG - chr1_4:65600152-65600171 Msa0178290:intron 40.0%
TAGAGTTAGGACTGAAGTGA+AGG - chr1_4:65600165-65600184 Msa0178290:intron 40.0%
AATGTGCCAAGTCTAAATCG+TGG - chr1_4:65600748-65600767 Msa0178290:CDS 40.0%
AGCAAGTGCTATGTTTCGTT+TGG - chr1_4:65600822-65600841 Msa0178290:CDS 40.0%
TTGGATGGTTTAGGTACAAG+AGG - chr1_4:65601036-65601055 Msa0178290:CDS 40.0%
TTTAGGTACAAGAGGCTAAC+TGG - chr1_4:65601044-65601063 Msa0178290:CDS 40.0%
TTAGGTACAAGAGGCTAACT+GGG - chr1_4:65601045-65601064 Msa0178290:CDS 40.0%
GCAAAGAAAAAAGAGGCAGA+AGG - chr1_4:65601196-65601215 Msa0178290:CDS 40.0%
! AAACGACTACACAGCTCTAA+GGG - chr1_4:65601279-65601298 Msa0178290:CDS 40.0%
! GGAATAACGGAAGGTTCTAT+GGG - chr1_4:65601418-65601437 Msa0178290:CDS 40.0%
TCATGGACAGTCTTAAACAG+AGG + chr1_4:65601481-65601500 None:intergenic 40.0%
ACTCATGGCTTGAACTTCGA+AGG + chr1_4:65599630-65599649 None:intergenic 45.0%
AGGACCAATTGTGAAGACAG+CGG + chr1_4:65599678-65599697 None:intergenic 45.0%
! ACCATGGAAGAGGTTTTCAG+AGG - chr1_4:65599830-65599849 Msa0178290:CDS 45.0%
! TCCTCTGAAAACCTCTTCCA+TGG + chr1_4:65599834-65599853 None:intergenic 45.0%
GTGGCAGAAGCTAAGATGAA+AGG - chr1_4:65600028-65600047 Msa0178290:CDS 45.0%
!! GTGAAGTTGGCTCGAAATCT+AGG - chr1_4:65600050-65600069 Msa0178290:intron 45.0%
! TTGGCTCGAAATCTAGGGAA+GGG - chr1_4:65600056-65600075 Msa0178290:intron 45.0%
GTTATTGCTATGCAGAGAGC+TGG - chr1_4:65600121-65600140 Msa0178290:intron 45.0%
GAATCAAAGAGAGGCTGAAG+TGG - chr1_4:65600195-65600214 Msa0178290:intron 45.0%
! TGAGTTGGCGAAGAAGAAAG+CGG - chr1_4:65600231-65600250 Msa0178290:intron 45.0%
!! TGCTAAAGCTGTGGCTCTAA+GGG - chr1_4:65600291-65600310 Msa0178290:intron 45.0%
AGGGATCCACGATTTAGACT+TGG + chr1_4:65600757-65600776 None:intergenic 45.0%
TCTGTATGAGAAGAAGGCAG+AGG - chr1_4:65601102-65601121 Msa0178290:CDS 45.0%
CAGAAGGGATTGTGACACTT+GGG - chr1_4:65601212-65601231 Msa0178290:CDS 45.0%
GAAACGACTACACAGCTCTA+AGG - chr1_4:65601278-65601297 Msa0178290:CDS 45.0%
TGGTGGCATGTTTCAAGAGA+TGG - chr1_4:65601318-65601337 Msa0178290:CDS 45.0%
GATGGCTAAGATCAATGCTG+AGG - chr1_4:65601336-65601355 Msa0178290:CDS 45.0%
TGGACTAATGGAGGTGACAA+TGG - chr1_4:65601391-65601410 Msa0178290:CDS 45.0%
ACTAATGGAGGTGACAATGG+AGG - chr1_4:65601394-65601413 Msa0178290:CDS 45.0%
TGACAATGGAGGCGGAATAA+CGG - chr1_4:65601405-65601424 Msa0178290:CDS 45.0%
! CGGAATAACGGAAGGTTCTA+TGG - chr1_4:65601417-65601436 Msa0178290:CDS 45.0%
AGGTTCTATGGGCATGAAAG+AGG - chr1_4:65601429-65601448 Msa0178290:CDS 45.0%
TGGACAGTCTTAAACAGAGG+TGG + chr1_4:65601478-65601497 None:intergenic 45.0%
AAGACTGTCCATGAGCAAAC+AGG - chr1_4:65601487-65601506 Msa0178290:CDS 45.0%
ACTCATGGCTTGAACTTCGA+AGG + chr1_4:65599630-65599649 None:intergenic 45.0%
AGGACCAATTGTGAAGACAG+CGG + chr1_4:65599678-65599697 None:intergenic 45.0%
! ACCATGGAAGAGGTTTTCAG+AGG - chr1_4:65599830-65599849 Msa0178290:CDS 45.0%
! TCCTCTGAAAACCTCTTCCA+TGG + chr1_4:65599834-65599853 None:intergenic 45.0%
GTGGCAGAAGCTAAGATGAA+AGG - chr1_4:65600028-65600047 Msa0178290:CDS 45.0%
!! GTGAAGTTGGCTCGAAATCT+AGG - chr1_4:65600050-65600069 Msa0178290:intron 45.0%
! TTGGCTCGAAATCTAGGGAA+GGG - chr1_4:65600056-65600075 Msa0178290:intron 45.0%
GTTATTGCTATGCAGAGAGC+TGG - chr1_4:65600121-65600140 Msa0178290:intron 45.0%
GAATCAAAGAGAGGCTGAAG+TGG - chr1_4:65600195-65600214 Msa0178290:intron 45.0%
! TGAGTTGGCGAAGAAGAAAG+CGG - chr1_4:65600231-65600250 Msa0178290:intron 45.0%
!! TGCTAAAGCTGTGGCTCTAA+GGG - chr1_4:65600291-65600310 Msa0178290:intron 45.0%
AGGGATCCACGATTTAGACT+TGG + chr1_4:65600757-65600776 None:intergenic 45.0%
TCTGTATGAGAAGAAGGCAG+AGG - chr1_4:65601102-65601121 Msa0178290:CDS 45.0%
CAGAAGGGATTGTGACACTT+GGG - chr1_4:65601212-65601231 Msa0178290:CDS 45.0%
GAAACGACTACACAGCTCTA+AGG - chr1_4:65601278-65601297 Msa0178290:CDS 45.0%
TGGTGGCATGTTTCAAGAGA+TGG - chr1_4:65601318-65601337 Msa0178290:CDS 45.0%
GATGGCTAAGATCAATGCTG+AGG - chr1_4:65601336-65601355 Msa0178290:CDS 45.0%
TGGACTAATGGAGGTGACAA+TGG - chr1_4:65601391-65601410 Msa0178290:CDS 45.0%
ACTAATGGAGGTGACAATGG+AGG - chr1_4:65601394-65601413 Msa0178290:CDS 45.0%
TGACAATGGAGGCGGAATAA+CGG - chr1_4:65601405-65601424 Msa0178290:CDS 45.0%
! CGGAATAACGGAAGGTTCTA+TGG - chr1_4:65601417-65601436 Msa0178290:CDS 45.0%
AGGTTCTATGGGCATGAAAG+AGG - chr1_4:65601429-65601448 Msa0178290:CDS 45.0%
TGGACAGTCTTAAACAGAGG+TGG + chr1_4:65601478-65601497 None:intergenic 45.0%
AAGACTGTCCATGAGCAAAC+AGG - chr1_4:65601487-65601506 Msa0178290:CDS 45.0%
!!! TTATTTTTTAATATGTTATA+TGG - chr1_4:65600586-65600605 Msa0178290:intron 5.0%
!!! TTATTTTTTAATATGTTATA+TGG - chr1_4:65600586-65600605 Msa0178290:intron 5.0%
!! AGCAAAAGCATCCGAGTACC+TGG - chr1_4:65599502-65599521 Msa0178290:three_prime_UTR 50.0%
TCCGAGTACCTGGTGATAAC+CGG - chr1_4:65599512-65599531 Msa0178290:three_prime_UTR 50.0%
TCCGGTTATCACCAGGTACT+CGG + chr1_4:65599516-65599535 None:intergenic 50.0%
GATGTCTTCGATTCCAGCTC+CGG + chr1_4:65599534-65599553 None:intergenic 50.0%
AGACGGTGCAAGATTGACCA+GGG + chr1_4:65599583-65599602 None:intergenic 50.0%
AAGACGGTGCAAGATTGACC+AGG + chr1_4:65599584-65599603 None:intergenic 50.0%
AGGTATAGTTCACCGGTGAG+AGG + chr1_4:65599610-65599629 None:intergenic 50.0%
!! AGGCAGTTTTTCGGCACTCA+TGG + chr1_4:65599645-65599664 None:intergenic 50.0%
AAGACAGCGGGAAGAACGAA+AGG + chr1_4:65599665-65599684 None:intergenic 50.0%
CTTCCCGCTGTCTTCACAAT+TGG - chr1_4:65599671-65599690 Msa0178290:CDS 50.0%
GGACCAATTGTGAAGACAGC+GGG + chr1_4:65599677-65599696 None:intergenic 50.0%
CTTTCCTGATCGTCAACACG+AGG + chr1_4:65599698-65599717 None:intergenic 50.0%
TGCTTCGATGACCATGGAAG+AGG - chr1_4:65599820-65599839 Msa0178290:CDS 50.0%
! AAGCAATTGGTGGATGTGCC+TGG - chr1_4:65599938-65599957 Msa0178290:CDS 50.0%
TGGAAGCAGCGAATCAAGCT+AGG - chr1_4:65599999-65600018 Msa0178290:CDS 50.0%
GGAAGCAGCGAATCAAGCTA+GGG - chr1_4:65600000-65600019 Msa0178290:CDS 50.0%
GAATCAAGCTAGGGTTGACG+TGG - chr1_4:65600009-65600028 Msa0178290:CDS 50.0%
!! GTTGGCTCGAAATCTAGGGA+AGG - chr1_4:65600055-65600074 Msa0178290:intron 50.0%
GGCTGAGGCTAATTCTGAGT+TGG - chr1_4:65600216-65600235 Msa0178290:intron 50.0%
! GAAGAAAGCGGCTTGGACTA+AGG - chr1_4:65600243-65600262 Msa0178290:intron 50.0%
! CTGCTAAAGCTGTGGCTCTA+AGG - chr1_4:65600290-65600309 Msa0178290:intron 50.0%
CTCAACCTCACCTTGCAACT+CGG + chr1_4:65600320-65600339 None:intergenic 50.0%
AGTTGCAAGGTGAGGTTGAG+AGG - chr1_4:65600320-65600339 Msa0178290:intron 50.0%
GCAGAAGGGATTGTGACACT+TGG - chr1_4:65601211-65601230 Msa0178290:CDS 50.0%
GTGACACTTGGGAATGCTCA+AGG - chr1_4:65601223-65601242 Msa0178290:CDS 50.0%
ATCAATGCTGAGGCAGTACG+TGG - chr1_4:65601346-65601365 Msa0178290:CDS 50.0%
AATGGAGGTGACAATGGAGG+CGG - chr1_4:65601397-65601416 Msa0178290:CDS 50.0%
! AATGGAGGCGGAATAACGGA+AGG - chr1_4:65601409-65601428 Msa0178290:CDS 50.0%
ATGGGCATGAAAGAGGTTGC+TGG - chr1_4:65601436-65601455 Msa0178290:CDS 50.0%
GATAAGGTTCCCATCCAAGC+AGG + chr1_4:65601523-65601542 None:intergenic 50.0%
!! AGCAAAAGCATCCGAGTACC+TGG - chr1_4:65599502-65599521 Msa0178290:three_prime_UTR 50.0%
TCCGAGTACCTGGTGATAAC+CGG - chr1_4:65599512-65599531 Msa0178290:three_prime_UTR 50.0%
TCCGGTTATCACCAGGTACT+CGG + chr1_4:65599516-65599535 None:intergenic 50.0%
GATGTCTTCGATTCCAGCTC+CGG + chr1_4:65599534-65599553 None:intergenic 50.0%
AGACGGTGCAAGATTGACCA+GGG + chr1_4:65599583-65599602 None:intergenic 50.0%
AAGACGGTGCAAGATTGACC+AGG + chr1_4:65599584-65599603 None:intergenic 50.0%
AGGTATAGTTCACCGGTGAG+AGG + chr1_4:65599610-65599629 None:intergenic 50.0%
!! AGGCAGTTTTTCGGCACTCA+TGG + chr1_4:65599645-65599664 None:intergenic 50.0%
AAGACAGCGGGAAGAACGAA+AGG + chr1_4:65599665-65599684 None:intergenic 50.0%
CTTCCCGCTGTCTTCACAAT+TGG - chr1_4:65599671-65599690 Msa0178290:CDS 50.0%
GGACCAATTGTGAAGACAGC+GGG + chr1_4:65599677-65599696 None:intergenic 50.0%
CTTTCCTGATCGTCAACACG+AGG + chr1_4:65599698-65599717 None:intergenic 50.0%
TGCTTCGATGACCATGGAAG+AGG - chr1_4:65599820-65599839 Msa0178290:CDS 50.0%
! AAGCAATTGGTGGATGTGCC+TGG - chr1_4:65599938-65599957 Msa0178290:CDS 50.0%
TGGAAGCAGCGAATCAAGCT+AGG - chr1_4:65599999-65600018 Msa0178290:CDS 50.0%
GGAAGCAGCGAATCAAGCTA+GGG - chr1_4:65600000-65600019 Msa0178290:CDS 50.0%
GAATCAAGCTAGGGTTGACG+TGG - chr1_4:65600009-65600028 Msa0178290:CDS 50.0%
!! GTTGGCTCGAAATCTAGGGA+AGG - chr1_4:65600055-65600074 Msa0178290:intron 50.0%
GGCTGAGGCTAATTCTGAGT+TGG - chr1_4:65600216-65600235 Msa0178290:intron 50.0%
! GAAGAAAGCGGCTTGGACTA+AGG - chr1_4:65600243-65600262 Msa0178290:intron 50.0%
! CTGCTAAAGCTGTGGCTCTA+AGG - chr1_4:65600290-65600309 Msa0178290:intron 50.0%
CTCAACCTCACCTTGCAACT+CGG + chr1_4:65600320-65600339 None:intergenic 50.0%
AGTTGCAAGGTGAGGTTGAG+AGG - chr1_4:65600320-65600339 Msa0178290:intron 50.0%
GCAGAAGGGATTGTGACACT+TGG - chr1_4:65601211-65601230 Msa0178290:CDS 50.0%
GTGACACTTGGGAATGCTCA+AGG - chr1_4:65601223-65601242 Msa0178290:CDS 50.0%
ATCAATGCTGAGGCAGTACG+TGG - chr1_4:65601346-65601365 Msa0178290:CDS 50.0%
AATGGAGGTGACAATGGAGG+CGG - chr1_4:65601397-65601416 Msa0178290:CDS 50.0%
! AATGGAGGCGGAATAACGGA+AGG - chr1_4:65601409-65601428 Msa0178290:CDS 50.0%
ATGGGCATGAAAGAGGTTGC+TGG - chr1_4:65601436-65601455 Msa0178290:CDS 50.0%
GATAAGGTTCCCATCCAAGC+AGG + chr1_4:65601523-65601542 None:intergenic 50.0%
TACCTGGTGATAACCGGAGC+TGG - chr1_4:65599518-65599537 Msa0178290:three_prime_UTR 55.0%
TTCCAGCTCCGGTTATCACC+AGG + chr1_4:65599523-65599542 None:intergenic 55.0%
! TGGTCCTCGTGTTGACGATC+AGG - chr1_4:65599691-65599710 Msa0178290:CDS 55.0%
GAGAGCTGGAGAGAGTGACA+AGG - chr1_4:65600135-65600154 Msa0178290:intron 55.0%
AGCTGGAGAGAGTGACAAGG+AGG - chr1_4:65600138-65600157 Msa0178290:intron 55.0%
GCTGGAGAGAGTGACAAGGA+GGG - chr1_4:65600139-65600158 Msa0178290:intron 55.0%
AAGAGAGGCTGAAGTGGCTG+AGG - chr1_4:65600201-65600220 Msa0178290:intron 55.0%
TGGCGAAGAAGAAAGCGGCT+TGG - chr1_4:65600236-65600255 Msa0178290:intron 55.0%
! GAAAGCGGCTTGGACTAAGG+CGG - chr1_4:65600246-65600265 Msa0178290:intron 55.0%
TTGGACTAAGGCGGCTCAAG+TGG - chr1_4:65600255-65600274 Msa0178290:intron 55.0%
AGTCGAGGCTGCTAAAGCTG+TGG - chr1_4:65600282-65600301 Msa0178290:intron 55.0%
CTAAGGGAAGCCGAGTTGCA+AGG - chr1_4:65600307-65600326 Msa0178290:intron 55.0%
GCAGCATGCCTGTTTGCTCA+TGG + chr1_4:65601498-65601517 None:intergenic 55.0%
ATGCTGCCTCCTGCTTGGAT+GGG - chr1_4:65601511-65601530 Msa0178290:CDS 55.0%
AAGGTTCCCATCCAAGCAGG+AGG + chr1_4:65601520-65601539 None:intergenic 55.0%
TACCTGGTGATAACCGGAGC+TGG - chr1_4:65599518-65599537 Msa0178290:three_prime_UTR 55.0%
TTCCAGCTCCGGTTATCACC+AGG + chr1_4:65599523-65599542 None:intergenic 55.0%
! TGGTCCTCGTGTTGACGATC+AGG - chr1_4:65599691-65599710 Msa0178290:CDS 55.0%
GAGAGCTGGAGAGAGTGACA+AGG - chr1_4:65600135-65600154 Msa0178290:intron 55.0%
AGCTGGAGAGAGTGACAAGG+AGG - chr1_4:65600138-65600157 Msa0178290:intron 55.0%
GCTGGAGAGAGTGACAAGGA+GGG - chr1_4:65600139-65600158 Msa0178290:intron 55.0%
AAGAGAGGCTGAAGTGGCTG+AGG - chr1_4:65600201-65600220 Msa0178290:intron 55.0%
TGGCGAAGAAGAAAGCGGCT+TGG - chr1_4:65600236-65600255 Msa0178290:intron 55.0%
! GAAAGCGGCTTGGACTAAGG+CGG - chr1_4:65600246-65600265 Msa0178290:intron 55.0%
TTGGACTAAGGCGGCTCAAG+TGG - chr1_4:65600255-65600274 Msa0178290:intron 55.0%
AGTCGAGGCTGCTAAAGCTG+TGG - chr1_4:65600282-65600301 Msa0178290:intron 55.0%
CTAAGGGAAGCCGAGTTGCA+AGG - chr1_4:65600307-65600326 Msa0178290:intron 55.0%
GCAGCATGCCTGTTTGCTCA+TGG + chr1_4:65601498-65601517 None:intergenic 55.0%
ATGCTGCCTCCTGCTTGGAT+GGG - chr1_4:65601511-65601530 Msa0178290:CDS 55.0%
AAGGTTCCCATCCAAGCAGG+AGG + chr1_4:65601520-65601539 None:intergenic 55.0%
CACCGTCTTCGACCTCTCAC+CGG - chr1_4:65599595-65599614 Msa0178290:CDS 60.0%
CACCGGTGAGAGGTCGAAGA+CGG + chr1_4:65599600-65599619 None:intergenic 60.0%
CCATGGTCATCGAAGCAGCG+AGG + chr1_4:65599817-65599836 None:intergenic 60.0%
CCTCGCTGCTTCGATGACCA+TGG - chr1_4:65599814-65599833 Msa0178290:CDS 60.0%
GGCTCAAGTGGCTGAAGTCG+AGG - chr1_4:65600267-65600286 Msa0178290:intron 60.0%
GGAAGCCGAGTTGCAAGGTG+AGG - chr1_4:65600312-65600331 Msa0178290:intron 60.0%
CATGCTGCCTCCTGCTTGGA+TGG - chr1_4:65601510-65601529 Msa0178290:CDS 60.0%
CACCGTCTTCGACCTCTCAC+CGG - chr1_4:65599595-65599614 Msa0178290:CDS 60.0%
CACCGGTGAGAGGTCGAAGA+CGG + chr1_4:65599600-65599619 None:intergenic 60.0%
CCATGGTCATCGAAGCAGCG+AGG + chr1_4:65599817-65599836 None:intergenic 60.0%
CCTCGCTGCTTCGATGACCA+TGG - chr1_4:65599814-65599833 Msa0178290:CDS 60.0%
GGCTCAAGTGGCTGAAGTCG+AGG - chr1_4:65600267-65600286 Msa0178290:intron 60.0%
GGAAGCCGAGTTGCAAGGTG+AGG - chr1_4:65600312-65600331 Msa0178290:intron 60.0%
CATGCTGCCTCCTGCTTGGA+TGG - chr1_4:65601510-65601529 Msa0178290:CDS 60.0%
CAGGCATGCTGCCTCCTGCT+TGG - chr1_4:65601506-65601525 Msa0178290:CDS 65.0%
CAGGCATGCTGCCTCCTGCT+TGG - chr1_4:65601506-65601525 Msa0178290:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 65599436 65601665 65599436 ID=Msa0178290;Name=Msa0178290
chr1_4 mRNA 65599436 65601665 65599436 ID=Msa0178290-mRNA-1;Parent=Msa0178290;Name=Msa0178290-mRNA-1;_AED=0.01;_eAED=0.01;_QI=55|1|1|1|1|1|2|107|478
chr1_4 exon 65599436 65600052 65599436 ID=Msa0178290-mRNA-1:exon:21395;Parent=Msa0178290-mRNA-1
chr1_4 exon 65600684 65601665 65600684 ID=Msa0178290-mRNA-1:exon:21394;Parent=Msa0178290-mRNA-1
chr1_4 five_prime_UTR 65601611 65601665 65601611 ID=Msa0178290-mRNA-1:five_prime_utr;Parent=Msa0178290-mRNA-1
chr1_4 CDS 65600684 65601610 65600684 ID=Msa0178290-mRNA-1:cds;Parent=Msa0178290-mRNA-1
chr1_4 CDS 65599543 65600052 65599543 ID=Msa0178290-mRNA-1:cds;Parent=Msa0178290-mRNA-1
chr1_4 three_prime_UTR 65599436 65599542 65599436 ID=Msa0178290-mRNA-1:three_prime_utr;Parent=Msa0178290-mRNA-1
Gene Sequence

>Msa0178290

ATGTACAGGGTAGCAAAAGCATCCGAGTACCTGGTGATAACCGGAGCTGGAATCGAAGACATCAAACTTGCAAAGAAATCATGGGTTTTCCCTGGTCAATCTTGCACCGTCTTCGACCTCTCACCGGTGAACTATACCTTCGAAGTTCAAGCCATGAGTGCCGAAAAACTGCCTTTCGTTCTTCCCGCTGTCTTCACAATTGGTCCTCGTGTTGACGATCAGGAAAGCCTCCTCAAATACGCTAAACTGATTTCACCTCATGATAAACTCTCGAATCATGTCAAGGAACTAGTTCAAGGAATCATCGAAGGGGAGACACGTGTCCTCGCTGCTTCGATGACCATGGAAGAGGTTTTCAGAGGAACAAAAGAGTTTAAACAAGAAGTATTCGAGAAAGTTCAACTCGAACTAAACCAATTCGGGTTATTGATTTACAATGCGAATGTTAAGCAATTGGTGGATGTGCCTGGTCATGAATATTTCTCATATTTAGGGCAAAAGACGCAAATGGAAGCAGCGAATCAAGCTAGGGTTGACGTGGCAGAAGCTAAGATGAAAGGTGAAGTTGGCTCGAAATCTAGGGAAGGGCAAACACTGCAGAATGCAGCAAAAATTGACGCGGAGACGAAAGTTATTGCTATGCAGAGAGCTGGAGAGAGTGACAAGGAGGGATTTAGAGTTAGGACTGAAGTGAAGGTTTTTGAGAATCAAAGAGAGGCTGAAGTGGCTGAGGCTAATTCTGAGTTGGCGAAGAAGAAAGCGGCTTGGACTAAGGCGGCTCAAGTGGCTGAAGTCGAGGCTGCTAAAGCTGTGGCTCTAAGGGAAGCCGAGTTGCAAGGTGAGGTTGAGAGGATGAATGCTTTGACTACTACTCAGAAGCTTAAAGCTGATTTACTTAGCAAAGCTAGTGTTGAGTATGAAACCAAGGTACAAGAGGCTAACTGGGAATTATACAAGAAACAGAAAGAAGCAGAAGCAATTCTGTATGAGAAGAAGGCAGAGGCAGAAGCACAGAAAGCATTGTCAGATGCAACATTTTATGCGCGCAAGCAAGCAGCTGAAGCAGAGCTATACGCAAAGAAAAAAGAGGCAGAAGGGATTGTGACACTTGGGAATGCTCAAGGAGTGTATGTAAATACACTTCTCAATGCACTTGGAAACGACTACACAGCTCTAAGGGATTACTTGATGATAAATGGTGGCATGTTTCAAGAGATGGCTAAGATCAATGCTGAGGCAGTACGTGGACTTGAACCTAAGATTAGTATTTGGACTAATGGAGGTGACAATGGAGGCGGAATAACGGAAGGTTCTATGGGCATGAAAGAGGTTGCTGGTGTTTACAAGATGCTGCCACCTCTGTTTAAGACTGTCCATGAGCAAACAGGCATGCTGCCTCCTGCTTGGATGGGAACCTTATCCGACAAAAGCTCTTAA
Protein sequence

>Msa0178290

MYRVAKASEYLVITGAGIEDIKLAKKSWVFPGQSCTVFDLSPVNYTFEVQAMSAEKLPFVLPAVFTIGPRVDDQESLLKYAKLISPHDKLSNHVKELVQGIIEGETRVLAASMTMEEVFRGTKEFKQEVFEKVQLELNQFGLLIYNANVKQLVDVPGHEYFSYLGQKTQMEAANQARVDVAEAKMKGEVGSKSREGQTLQNAAKIDAETKVIAMQRAGESDKEGFRVRTEVKVFENQREAEVAEANSELAKKKAAWTKAAQVAEVEAAKAVALREAELQGEVERMNALTTTQKLKADLLSKASVEYETKVQEANWELYKKQKEAEAILYEKKAEAEAQKALSDATFYARKQAAEAELYAKKKEAEGIVTLGNAQGVYVNTLLNALGNDYTALRDYLMINGGMFQEMAKINAEAVRGLEPKISIWTNGGDNGGGITEGSMGMKEVAGVYKMLPPLFKTVHEQTGMLPPAWMGTLSDKSS*