Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124740 | sp|D2XNQ8|FLOT1_MEDTR | 92.259 | 478 | 37 | 0 | 1 | 478 | 1 | 478 | 0.0 | 908 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124740 | A0A396JVK3 | 97.490 | 478 | 8 | 1 | 1 | 478 | 1 | 474 | 0.0 | 944 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029460 | Msa0124740 | 0.902809 | 6.626962e-79 | -8.615850e-47 |
| Msa0124740 | Msa0124810 | 0.965878 | 3.528070e-125 | -8.615850e-47 |
| Msa0124740 | Msa0169500 | 0.943689 | 7.645082e-103 | -8.615850e-47 |
| Msa0124740 | Msa0178290 | 0.841471 | 4.658370e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124740 | MtrunA17_Chr1g0186201 | 97.490 | 478 | 8 | 1 | 1 | 478 | 1 | 474 | 0.0 | 944 |
| Msa0124740 | MtrunA17_Chr3g0137321 | 92.259 | 478 | 37 | 0 | 1 | 478 | 1 | 478 | 0.0 | 908 |
| Msa0124740 | MtrunA17_Chr3g0137261 | 91.632 | 478 | 40 | 0 | 1 | 478 | 3 | 480 | 0.0 | 875 |
| Msa0124740 | MtrunA17_Chr3g0137341 | 92.259 | 478 | 33 | 2 | 1 | 478 | 1 | 474 | 0.0 | 874 |
| Msa0124740 | MtrunA17_Chr1g0192071 | 88.912 | 478 | 45 | 1 | 1 | 478 | 3 | 472 | 0.0 | 837 |
| Msa0124740 | MtrunA17_Chr3g0137271 | 91.614 | 477 | 36 | 2 | 1 | 477 | 1 | 473 | 0.0 | 837 |
| Msa0124740 | MtrunA17_Chr1g0212211 | 79.511 | 532 | 52 | 6 | 1 | 478 | 1 | 529 | 0.0 | 798 |
| Msa0124740 | MtrunA17_Chr8g0364981 | 83.816 | 414 | 41 | 4 | 52 | 464 | 1 | 389 | 0.0 | 625 |
| Msa0124740 | MtrunA17_Chr1g0184991 | 97.976 | 247 | 5 | 0 | 1 | 247 | 1 | 247 | 1.12e-180 | 505 |
| Msa0124740 | MtrunA17_Chr1g0184981 | 96.907 | 194 | 3 | 1 | 285 | 478 | 1 | 191 | 1.86e-132 | 380 |
| Msa0124740 | MtrunA17_Chr3g0137301 | 90.155 | 193 | 19 | 0 | 285 | 477 | 1 | 193 | 1.08e-122 | 356 |
| Msa0124740 | MtrunA17_Chr3g0137311 | 86.667 | 135 | 18 | 0 | 1 | 135 | 19 | 153 | 7.58e-82 | 250 |
| Msa0124740 | MtrunA17_Chr3g0110461 | 83.333 | 42 | 7 | 0 | 113 | 154 | 1 | 42 | 2.13e-16 | 73.2 |
| Msa0124740 | MtrunA17_Chr8g0364991 | 69.231 | 39 | 12 | 0 | 1 | 39 | 1 | 39 | 5.20e-13 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124740 | AT5G25260.1 | 75.316 | 474 | 105 | 2 | 1 | 474 | 1 | 462 | 0.0 | 739 |
| Msa0124740 | AT5G25250.1 | 75.264 | 473 | 103 | 2 | 1 | 473 | 1 | 459 | 0.0 | 728 |
| Msa0124740 | AT5G64870.1 | 71.610 | 472 | 123 | 1 | 2 | 473 | 3 | 463 | 0.0 | 662 |
Find 120 sgRNAs with CRISPR-Local
Find 318 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAATATTTCTCATATTT+AGG | 0.103686 | 1_3:+52685135 | Msa0124740:CDS |
| TTGAACCTAAGATTAGTATT+TGG | 0.251111 | 1_3:+52686535 | Msa0124740:CDS |
| CGGAATAACGGAAGGTTCTA+TGG | 0.257659 | 1_3:+52686581 | Msa0124740:CDS |
| CTGCTAAAGCTGTGGCTCTA+AGG | 0.272737 | 1_3:+52685463 | Msa0124740:CDS |
| TGTTAAATTACCAAAATAAA+AGG | 0.291518 | 1_3:-52686760 | None:intergenic |
| AGGGATTACTTGATGATAAA+TGG | 0.295084 | 1_3:+52686462 | Msa0124740:CDS |
| ATGAATATTTCTCATATTTA+GGG | 0.305111 | 1_3:+52685136 | Msa0124740:CDS |
| TCCGACAAAAGCTCTTAATT+AGG | 0.314591 | 1_3:+52686705 | Msa0124740:exon |
| GTGAAGTTGGCTCGAAATCT+AGG | 0.314615 | 1_3:+52685223 | Msa0124740:CDS |
| TTTAGGTACAAGAGGCTAAC+TGG | 0.315931 | 1_3:+52686208 | Msa0124740:intron |
| TTAGTCCAAATACTAATCTT+AGG | 0.318195 | 1_3:-52686540 | None:intergenic |
| CTTCCCGCTGTCTTCACAAT+TGG | 0.324959 | 1_3:+52684844 | Msa0124740:CDS |
| ATTAGGAGGATGCTTGTATT+AGG | 0.327156 | 1_3:+52686722 | Msa0124740:exon |
| ACAAGGAGGGATTTAGAGTT+AGG | 0.330276 | 1_3:+52685325 | Msa0124740:CDS |
| CATGTTGCCTCCTGCTTGGA+TGG | 0.342126 | 1_3:+52686674 | Msa0124740:CDS |
| TGTAAATCAATAACCCGAAT+TGG | 0.349196 | 1_3:-52685077 | None:intergenic |
| AAGATTAGTATTTGGACTAA+TGG | 0.361897 | 1_3:+52686543 | Msa0124740:CDS |
| GAAATGACTACACAGCTCTA+AGG | 0.365727 | 1_3:+52686442 | Msa0124740:CDS |
| CAATGCGAATGTTAAGCAAT+TGG | 0.388576 | 1_3:+52685098 | Msa0124740:CDS |
| CAACTCGAACTAAACCAATT+CGG | 0.390858 | 1_3:+52685063 | Msa0124740:CDS |
| ATCAAAATCAAACGATGTAC+AGG | 0.393868 | 1_3:+52684650 | Msa0124740:exon |
| TGGTCCTCGTGTTGACGATC+AGG | 0.407219 | 1_3:+52684864 | Msa0124740:CDS |
| TCAAACTTGCAAAGAAATCA+TGG | 0.416941 | 1_3:+52684725 | Msa0124740:CDS |
| AACTCGAACTAAACCAATTC+GGG | 0.427281 | 1_3:+52685064 | Msa0124740:CDS |
| TCCGAGTACCTGGTGATAAC+CGG | 0.437519 | 1_3:+52684685 | Msa0124740:CDS |
| GATGTCTTCGATTCCAGCTC+CGG | 0.437947 | 1_3:-52684704 | None:intergenic |
| GAAGAAAGCGGCTTGGACTA+AGG | 0.439613 | 1_3:+52685416 | Msa0124740:CDS |
| AGCAATTCTGTATGAGAAGA+AGG | 0.462456 | 1_3:+52686260 | Msa0124740:CDS |
| AAATCAGTTTAGCGTATTTG+AGG | 0.472961 | 1_3:-52684894 | None:intergenic |
| TTTAGGGCAAAAGACGCAAA+TGG | 0.491891 | 1_3:+52685152 | Msa0124740:CDS |
| AAGACTGTCCATGAGCAAAC+AGG | 0.492575 | 1_3:+52686651 | Msa0124740:CDS |
| TGGAAGCAGCGAATCAAGCT+AGG | 0.499263 | 1_3:+52685172 | Msa0124740:CDS |
| TTGGACTAAGGCGGCTCAAG+TGG | 0.501148 | 1_3:+52685428 | Msa0124740:CDS |
| TGCTAAAGCTGTGGCTCTAA+GGG | 0.501192 | 1_3:+52685464 | Msa0124740:CDS |
| CAGGCATGTTGCCTCCTGCT+TGG | 0.503335 | 1_3:+52686670 | Msa0124740:CDS |
| TGCTTCGATGACCATGGAAG+AGG | 0.508530 | 1_3:+52684993 | Msa0124740:CDS |
| AGCAAAAGCATCCGAGTACC+TGG | 0.509436 | 1_3:+52684675 | Msa0124740:CDS |
| TAGAGTTAGGACTGAAGTGA+AGG | 0.517399 | 1_3:+52685338 | Msa0124740:CDS |
| GCTAAGATGAAAGGTGAAGT+TGG | 0.517494 | 1_3:+52685210 | Msa0124740:CDS |
| CATGTCAAGGAACTAGTTCA+AGG | 0.517510 | 1_3:+52684940 | Msa0124740:CDS |
| GCAACATGCCTGTTTGCTCA+TGG | 0.521020 | 1_3:-52686659 | None:intergenic |
| ATGTTGCCTCCTGCTTGGAT+GGG | 0.522936 | 1_3:+52686675 | Msa0124740:CDS |
| GTTATTGCTATGCAGAGGGC+TGG | 0.525373 | 1_3:+52685294 | Msa0124740:CDS |
| TACCTGGTGATAACCGGAGC+TGG | 0.525647 | 1_3:+52684691 | Msa0124740:CDS |
| ATGGGCATGAAAGAGGTTGC+TGG | 0.526365 | 1_3:+52686600 | Msa0124740:CDS |
| AAGCAATTGGTGGATGTGCC+TGG | 0.526695 | 1_3:+52685111 | Msa0124740:CDS |
| TCCTCTGAAAACCTCTTCCA+TGG | 0.530446 | 1_3:-52685004 | None:intergenic |
| CGAAAGTTATTGCTATGCAG+AGG | 0.532272 | 1_3:+52685289 | Msa0124740:CDS |
| GGCTCAAGTGGCTGAAGTCG+AGG | 0.533715 | 1_3:+52685440 | Msa0124740:CDS |
| ATTAGTATTTGGACTAATGG+AGG | 0.534214 | 1_3:+52686546 | Msa0124740:CDS |
| TTCCAGCTCCGGTTATCACC+AGG | 0.538435 | 1_3:-52684693 | None:intergenic |
| TGGTGGCATGTTTCAAGAGA+TGG | 0.539247 | 1_3:+52686482 | Msa0124740:CDS |
| GACAAAAGCTCTTAATTAGG+AGG | 0.540934 | 1_3:+52686708 | Msa0124740:exon |
| TCCGGTTATCACCAGGTACT+CGG | 0.542656 | 1_3:-52684686 | None:intergenic |
| GGCTGAGGCTAATTCTGAGT+TGG | 0.544080 | 1_3:+52685389 | Msa0124740:CDS |
| TGACAATGGAGGCGGAATAA+CGG | 0.546090 | 1_3:+52686569 | Msa0124740:CDS |
| GCAGAAGGGATTGTGACACT+TGG | 0.546780 | 1_3:+52686375 | Msa0124740:CDS |
| CACCGTCTTCGACCTCTCAC+CGG | 0.548854 | 1_3:+52684768 | Msa0124740:CDS |
| GATAAGGTTCCCATCCAAGC+AGG | 0.550974 | 1_3:-52686684 | None:intergenic |
| AATACACTTCTCAATGCACT+TGG | 0.557121 | 1_3:+52686420 | Msa0124740:CDS |
| AAGAGAGGCTGAAGTGGCTG+AGG | 0.558698 | 1_3:+52685374 | Msa0124740:CDS |
| TTGGATGGTTTAGGTACAAG+AGG | 0.561865 | 1_3:+52686200 | Msa0124740:intron |
| CAAACTTGCAAAGAAATCAT+GGG | 0.562132 | 1_3:+52684726 | Msa0124740:CDS |
| AGGTTCTATGGGCATGAAAG+AGG | 0.562875 | 1_3:+52686593 | Msa0124740:CDS |
| TGCGAATGTTAAGCAATTGG+TGG | 0.563120 | 1_3:+52685101 | Msa0124740:CDS |
| GGACCAATTGTGAAGACAGC+GGG | 0.564372 | 1_3:-52684847 | None:intergenic |
| CTCAACCTCACCTTGCAACT+CGG | 0.566348 | 1_3:-52685490 | None:intergenic |
| GGAATAACGGAAGGTTCTAT+GGG | 0.567693 | 1_3:+52686582 | Msa0124740:CDS |
| CCTCGCTGCTTCGATGACCA+TGG | 0.570615 | 1_3:+52684987 | Msa0124740:CDS |
| ACTTCGAAGGTATAGTTCAC+CGG | 0.571447 | 1_3:-52684787 | None:intergenic |
| AAGACGGTGCAAGATTGACC+AGG | 0.574032 | 1_3:-52684754 | None:intergenic |
| AGGTATAGTTCACCGGTGAG+AGG | 0.574045 | 1_3:-52684780 | None:intergenic |
| AAATGACTACACAGCTCTAA+GGG | 0.574906 | 1_3:+52686443 | Msa0124740:CDS |
| AGTTGCAAGGTGAGGTTGAG+AGG | 0.575856 | 1_3:+52685493 | Msa0124740:CDS |
| TTAGGTACAAGAGGCTAACT+GGG | 0.579786 | 1_3:+52686209 | Msa0124740:intron |
| TGAAGTTGGCTCGAAATCTA+GGG | 0.579862 | 1_3:+52685224 | Msa0124740:CDS |
| GTGACACTTGGGAATGCTCA+AGG | 0.583871 | 1_3:+52686387 | Msa0124740:CDS |
| TGGCGAAGAAGAAAGCGGCT+TGG | 0.584288 | 1_3:+52685409 | Msa0124740:CDS |
| TCAGTTTAGCGTATTTGAGG+AGG | 0.587438 | 1_3:-52684891 | None:intergenic |
| GAATCAAAGAGAGGCTGAAG+TGG | 0.589954 | 1_3:+52685368 | Msa0124740:CDS |
| CTAAGGGAAGCCGAGTTGCA+AGG | 0.593610 | 1_3:+52685480 | Msa0124740:CDS |
| CAGAAGGGATTGTGACACTT+GGG | 0.598815 | 1_3:+52686376 | Msa0124740:CDS |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 1_3:+52686266 | Msa0124740:CDS |
| ACTCATGGCTTGAACTTCGA+AGG | 0.601319 | 1_3:-52684800 | None:intergenic |
| AATGGAGGTGACAATGGAGG+CGG | 0.607583 | 1_3:+52686561 | Msa0124740:CDS |
| TGGACTAATGGAGGTGACAA+TGG | 0.609237 | 1_3:+52686555 | Msa0124740:CDS |
| GCTGGAGAGAGTGACAAGGA+GGG | 0.609527 | 1_3:+52685312 | Msa0124740:CDS |
| CTAGTTCAAGGAATCATCGA+AGG | 0.612313 | 1_3:+52684952 | Msa0124740:CDS |
| GTGGCAGAAGCTAAGATGAA+AGG | 0.614706 | 1_3:+52685201 | Msa0124740:CDS |
| GGCTGGAGAGAGTGACAAGG+AGG | 0.627665 | 1_3:+52685311 | Msa0124740:CDS |
| CACCGGTGAGAGGTCGAAGA+CGG | 0.628279 | 1_3:-52684770 | None:intergenic |
| AAGACAGCGGGAAGAACGAA+AGG | 0.630029 | 1_3:-52684835 | None:intergenic |
| GGAAGCAGCGAATCAAGCTA+GGG | 0.630802 | 1_3:+52685173 | Msa0124740:CDS |
| TAGTTCAAGGAATCATCGAA+GGG | 0.630851 | 1_3:+52684953 | Msa0124740:CDS |
| GAAAGTTATTGCTATGCAGA+GGG | 0.630907 | 1_3:+52685290 | Msa0124740:CDS |
| ATCAATGCTGAGGCAGTACG+TGG | 0.635980 | 1_3:+52686510 | Msa0124740:CDS |
| TATGAGAAATATTCATGACC+AGG | 0.636387 | 1_3:-52685129 | None:intergenic |
| TCAAAATCAAACGATGTACA+GGG | 0.641066 | 1_3:+52684651 | Msa0124740:exon |
| TAGTGTTGAGTATGAAACCA+AGG | 0.644971 | 1_3:+52685569 | Msa0124740:CDS |
| GAGGGCTGGAGAGAGTGACA+AGG | 0.646522 | 1_3:+52685308 | Msa0124740:CDS |
| GGAAGCCGAGTTGCAAGGTG+AGG | 0.648282 | 1_3:+52685485 | Msa0124740:CDS |
| TGAGTTGGCGAAGAAGAAAG+CGG | 0.653130 | 1_3:+52685404 | Msa0124740:CDS |
| TAAACTCTCGAATCATGTCA+AGG | 0.655320 | 1_3:+52684927 | Msa0124740:CDS |
| TGGACAGTCTTAAACAGAGG+TGG | 0.656626 | 1_3:-52686639 | None:intergenic |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 1_3:+52686465 | Msa0124740:CDS |
| TCATGGACAGTCTTAAACAG+AGG | 0.660499 | 1_3:-52686642 | None:intergenic |
| AGTCGAGGCTGCTAAAGCTG+TGG | 0.666475 | 1_3:+52685455 | Msa0124740:CDS |
| AATGGAGGCGGAATAACGGA+AGG | 0.668536 | 1_3:+52686573 | Msa0124740:CDS |
| AAGGTTCCCATCCAAGCAGG+AGG | 0.669932 | 1_3:-52686681 | None:intergenic |
| GTTGGCTCGAAATCTAGGGA+AGG | 0.671253 | 1_3:+52685228 | Msa0124740:CDS |
| ACTAATGGAGGTGACAATGG+AGG | 0.677352 | 1_3:+52686558 | Msa0124740:CDS |
| TGATTCGAGAGTTTATCATG+AGG | 0.680428 | 1_3:-52684919 | None:intergenic |
| GATGGCTAAGATCAATGCTG+AGG | 0.682349 | 1_3:+52686500 | Msa0124740:CDS |
| GAATCAAGCTAGGGTTGACG+TGG | 0.682564 | 1_3:+52685182 | Msa0124740:CDS |
| CTTTCCTGATCGTCAACACG+AGG | 0.689163 | 1_3:-52684868 | None:intergenic |
| AGACGGTGCAAGATTGACCA+GGG | 0.716272 | 1_3:-52684753 | None:intergenic |
| AGTTCAAGGAATCATCGAAG+GGG | 0.721843 | 1_3:+52684954 | Msa0124740:CDS |
| AGGACCAATTGTGAAGACAG+CGG | 0.726189 | 1_3:-52684848 | None:intergenic |
| CCATGGTCATCGAAGCAGCG+AGG | 0.728643 | 1_3:-52684987 | None:intergenic |
| GAAAGCGGCTTGGACTAAGG+CGG | 0.747622 | 1_3:+52685419 | Msa0124740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTAATAAATGAAAGA+AGG | - | chr1_3:52685616-52685635 | None:intergenic | 10.0% |
| !!! | AATAATACTTTAATATCTTT+TGG | + | chr1_3:52685668-52685687 | Msa0124740:intron | 10.0% |
| !! | AATAATTAATAAATGAAAGA+AGG | - | chr1_3:52685616-52685635 | None:intergenic | 10.0% |
| !!! | AATAATACTTTAATATCTTT+TGG | + | chr1_3:52685668-52685687 | Msa0124740:intron | 10.0% |
| !! | ATGAATATTTCTCATATTTA+GGG | + | chr1_3:52685136-52685155 | Msa0124740:CDS | 15.0% |
| !! | CATTATAAAACTAAATCATA+TGG | + | chr1_3:52685835-52685854 | Msa0124740:intron | 15.0% |
| !!! | TGTTCTAAATTAATTTTGTT+AGG | + | chr1_3:52685890-52685909 | Msa0124740:intron | 15.0% |
| !! | TAATGTTAAAAAAATTGACA+AGG | - | chr1_3:52686090-52686109 | None:intergenic | 15.0% |
| !!! | AATGTTTATTTTTTAAGTAC+TGG | + | chr1_3:52686169-52686188 | Msa0124740:intron | 15.0% |
| !! | TGTTAAATTACCAAAATAAA+AGG | - | chr1_3:52686763-52686782 | None:intergenic | 15.0% |
| !! | ATGAATATTTCTCATATTTA+GGG | + | chr1_3:52685136-52685155 | Msa0124740:CDS | 15.0% |
| !! | CATTATAAAACTAAATCATA+TGG | + | chr1_3:52685835-52685854 | Msa0124740:intron | 15.0% |
| !!! | TGTTCTAAATTAATTTTGTT+AGG | + | chr1_3:52685890-52685909 | Msa0124740:intron | 15.0% |
| !! | TAATGTTAAAAAAATTGACA+AGG | - | chr1_3:52686090-52686109 | None:intergenic | 15.0% |
| !!! | AATGTTTATTTTTTAAGTAC+TGG | + | chr1_3:52686169-52686188 | Msa0124740:intron | 15.0% |
| !! | TGTTAAATTACCAAAATAAA+AGG | - | chr1_3:52686763-52686782 | None:intergenic | 15.0% |
| !! | CATGAATATTTCTCATATTT+AGG | + | chr1_3:52685135-52685154 | Msa0124740:CDS | 20.0% |
| !! | TTAAAAAAATTGACAAGGTT+TGG | - | chr1_3:52686085-52686104 | None:intergenic | 20.0% |
| !! | CATGAATATTTCTCATATTT+AGG | + | chr1_3:52685135-52685154 | Msa0124740:CDS | 20.0% |
| !! | TTAAAAAAATTGACAAGGTT+TGG | - | chr1_3:52686085-52686104 | None:intergenic | 20.0% |
| !!! | TCACTGTAGTTAAAGTTTTT+TGG | + | chr1_3:52685702-52685721 | Msa0124740:intron | 25.0% |
| !!! | ATATGGACAGTCAAATTTTT+TGG | + | chr1_3:52685777-52685796 | Msa0124740:intron | 25.0% |
| ! | ACAAAATAATAGCAAGCAAA+GGG | - | chr1_3:52685941-52685960 | None:intergenic | 25.0% |
| !!! | GCTATTATTTTGTGTACTTT+TGG | + | chr1_3:52685948-52685967 | Msa0124740:intron | 25.0% |
| ! | AAAACAAAACGATTGACATA+TGG | + | chr1_3:52686012-52686031 | Msa0124740:intron | 25.0% |
| ! | ATTGACATATGGTATGTAAA+TGG | + | chr1_3:52686023-52686042 | Msa0124740:intron | 25.0% |
| ! | GAAGTAAAACATAACAAAGT+AGG | + | chr1_3:52686122-52686141 | Msa0124740:intron | 25.0% |
| !!! | TTAAGTACTGGTTGAAATTT+TGG | + | chr1_3:52686181-52686200 | Msa0124740:intron | 25.0% |
| ! | TTGAACCTAAGATTAGTATT+TGG | + | chr1_3:52686535-52686554 | Msa0124740:CDS | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | - | chr1_3:52686543-52686562 | None:intergenic | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+TGG | + | chr1_3:52686543-52686562 | Msa0124740:CDS | 25.0% |
| !!! | AGTAGCAATACCTTTTATTT+TGG | + | chr1_3:52686750-52686769 | Msa0124740:three_prime_UTR | 25.0% |
| !!! | TCACTGTAGTTAAAGTTTTT+TGG | + | chr1_3:52685702-52685721 | Msa0124740:intron | 25.0% |
| !!! | ATATGGACAGTCAAATTTTT+TGG | + | chr1_3:52685777-52685796 | Msa0124740:intron | 25.0% |
| ! | ACAAAATAATAGCAAGCAAA+GGG | - | chr1_3:52685941-52685960 | None:intergenic | 25.0% |
| !!! | GCTATTATTTTGTGTACTTT+TGG | + | chr1_3:52685948-52685967 | Msa0124740:intron | 25.0% |
| ! | AAAACAAAACGATTGACATA+TGG | + | chr1_3:52686012-52686031 | Msa0124740:intron | 25.0% |
| ! | ATTGACATATGGTATGTAAA+TGG | + | chr1_3:52686023-52686042 | Msa0124740:intron | 25.0% |
| ! | GAAGTAAAACATAACAAAGT+AGG | + | chr1_3:52686122-52686141 | Msa0124740:intron | 25.0% |
| !!! | TTAAGTACTGGTTGAAATTT+TGG | + | chr1_3:52686181-52686200 | Msa0124740:intron | 25.0% |
| ! | TTGAACCTAAGATTAGTATT+TGG | + | chr1_3:52686535-52686554 | Msa0124740:CDS | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | - | chr1_3:52686543-52686562 | None:intergenic | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+TGG | + | chr1_3:52686543-52686562 | Msa0124740:CDS | 25.0% |
| !!! | AGTAGCAATACCTTTTATTT+TGG | + | chr1_3:52686750-52686769 | Msa0124740:three_prime_UTR | 25.0% |
| ! | GTTTCAATTTTCTTGTCAAG+AGG | + | chr1_3:52684613-52684632 | Msa0124740:five_prime_UTR | 30.0% |
| ATCAAAATCAAACGATGTAC+AGG | + | chr1_3:52684650-52684669 | Msa0124740:exon | 30.0% | |
| TCAAAATCAAACGATGTACA+GGG | + | chr1_3:52684651-52684670 | Msa0124740:exon | 30.0% | |
| TCAAACTTGCAAAGAAATCA+TGG | + | chr1_3:52684725-52684744 | Msa0124740:CDS | 30.0% | |
| CAAACTTGCAAAGAAATCAT+GGG | + | chr1_3:52684726-52684745 | Msa0124740:CDS | 30.0% | |
| AAATCAGTTTAGCGTATTTG+AGG | - | chr1_3:52684897-52684916 | None:intergenic | 30.0% | |
| TGTAAATCAATAACCCGAAT+TGG | - | chr1_3:52685080-52685099 | None:intergenic | 30.0% | |
| TATGAGAAATATTCATGACC+AGG | - | chr1_3:52685132-52685151 | None:intergenic | 30.0% | |
| AAGAAGGAGTTATATTTGCA+TGG | - | chr1_3:52685600-52685619 | None:intergenic | 30.0% | |
| CACAAAATAATAGCAAGCAA+AGG | - | chr1_3:52685942-52685961 | None:intergenic | 30.0% | |
| GGCAAATAGATTGAAGAATA+TGG | + | chr1_3:52686044-52686063 | Msa0124740:intron | 30.0% | |
| ! | AAAAATTGACAAGGTTTGGT+TGG | - | chr1_3:52686081-52686100 | None:intergenic | 30.0% |
| ! | GTTGAAATTTTGGATGGTTT+AGG | + | chr1_3:52686191-52686210 | Msa0124740:intron | 30.0% |
| ! | AGGGATTACTTGATGATAAA+TGG | + | chr1_3:52686462-52686481 | Msa0124740:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | + | chr1_3:52686465-52686484 | Msa0124740:CDS | 30.0% |
| ATTAGTATTTGGACTAATGG+AGG | + | chr1_3:52686546-52686565 | Msa0124740:CDS | 30.0% | |
| ! | TCCTAATTAAGAGCTTTTGT+CGG | - | chr1_3:52686709-52686728 | None:intergenic | 30.0% |
| ! | GTTTCAATTTTCTTGTCAAG+AGG | + | chr1_3:52684613-52684632 | Msa0124740:five_prime_UTR | 30.0% |
| ATCAAAATCAAACGATGTAC+AGG | + | chr1_3:52684650-52684669 | Msa0124740:exon | 30.0% | |
| TCAAAATCAAACGATGTACA+GGG | + | chr1_3:52684651-52684670 | Msa0124740:exon | 30.0% | |
| TCAAACTTGCAAAGAAATCA+TGG | + | chr1_3:52684725-52684744 | Msa0124740:CDS | 30.0% | |
| CAAACTTGCAAAGAAATCAT+GGG | + | chr1_3:52684726-52684745 | Msa0124740:CDS | 30.0% | |
| AAATCAGTTTAGCGTATTTG+AGG | - | chr1_3:52684897-52684916 | None:intergenic | 30.0% | |
| TGTAAATCAATAACCCGAAT+TGG | - | chr1_3:52685080-52685099 | None:intergenic | 30.0% | |
| TATGAGAAATATTCATGACC+AGG | - | chr1_3:52685132-52685151 | None:intergenic | 30.0% | |
| AAGAAGGAGTTATATTTGCA+TGG | - | chr1_3:52685600-52685619 | None:intergenic | 30.0% | |
| CACAAAATAATAGCAAGCAA+AGG | - | chr1_3:52685942-52685961 | None:intergenic | 30.0% | |
| GGCAAATAGATTGAAGAATA+TGG | + | chr1_3:52686044-52686063 | Msa0124740:intron | 30.0% | |
| ! | AAAAATTGACAAGGTTTGGT+TGG | - | chr1_3:52686081-52686100 | None:intergenic | 30.0% |
| ! | GTTGAAATTTTGGATGGTTT+AGG | + | chr1_3:52686191-52686210 | Msa0124740:intron | 30.0% |
| ! | AGGGATTACTTGATGATAAA+TGG | + | chr1_3:52686462-52686481 | Msa0124740:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | + | chr1_3:52686465-52686484 | Msa0124740:CDS | 30.0% |
| ATTAGTATTTGGACTAATGG+AGG | + | chr1_3:52686546-52686565 | Msa0124740:CDS | 30.0% | |
| ! | TCCTAATTAAGAGCTTTTGT+CGG | - | chr1_3:52686709-52686728 | None:intergenic | 30.0% |
| ! | AAGAACGAAAGGCAGTTTTT+CGG | - | chr1_3:52684827-52684846 | None:intergenic | 35.0% |
| TGATTCGAGAGTTTATCATG+AGG | - | chr1_3:52684922-52684941 | None:intergenic | 35.0% | |
| TAAACTCTCGAATCATGTCA+AGG | + | chr1_3:52684927-52684946 | Msa0124740:CDS | 35.0% | |
| TAGTTCAAGGAATCATCGAA+GGG | + | chr1_3:52684953-52684972 | Msa0124740:CDS | 35.0% | |
| CAACTCGAACTAAACCAATT+CGG | + | chr1_3:52685063-52685082 | Msa0124740:CDS | 35.0% | |
| AACTCGAACTAAACCAATTC+GGG | + | chr1_3:52685064-52685083 | Msa0124740:CDS | 35.0% | |
| CAATGCGAATGTTAAGCAAT+TGG | + | chr1_3:52685098-52685117 | Msa0124740:CDS | 35.0% | |
| GAAAGTTATTGCTATGCAGA+GGG | + | chr1_3:52685290-52685309 | Msa0124740:CDS | 35.0% | |
| !! | GGTTTTTGAGAATCAAAGAG+AGG | + | chr1_3:52685359-52685378 | Msa0124740:CDS | 35.0% |
| ! | TAGTGTTGAGTATGAAACCA+AGG | + | chr1_3:52685569-52685588 | Msa0124740:CDS | 35.0% |
| ! | ATATTTGCATGGACTAACCT+TGG | - | chr1_3:52685589-52685608 | None:intergenic | 35.0% |
| !!! | GTACTGGTTGAAATTTTGGA+TGG | + | chr1_3:52686185-52686204 | Msa0124740:intron | 35.0% |
| AGCAATTCTGTATGAGAAGA+AGG | + | chr1_3:52686260-52686279 | Msa0124740:CDS | 35.0% | |
| GCTATACGCAAAGAAAAAAG+AGG | + | chr1_3:52686353-52686372 | Msa0124740:CDS | 35.0% | |
| CAAAGAAAAAAGAGGCAGAA+GGG | + | chr1_3:52686361-52686380 | Msa0124740:CDS | 35.0% | |
| AATACACTTCTCAATGCACT+TGG | + | chr1_3:52686420-52686439 | Msa0124740:CDS | 35.0% | |
| ! | AAATGACTACACAGCTCTAA+GGG | + | chr1_3:52686443-52686462 | Msa0124740:CDS | 35.0% |
| ! | TTAAGAGCTTTTGTCGGATA+AGG | - | chr1_3:52686703-52686722 | None:intergenic | 35.0% |
| TCCGACAAAAGCTCTTAATT+AGG | + | chr1_3:52686705-52686724 | Msa0124740:exon | 35.0% | |
| GACAAAAGCTCTTAATTAGG+AGG | + | chr1_3:52686708-52686727 | Msa0124740:exon | 35.0% | |
| ATTAGGAGGATGCTTGTATT+AGG | + | chr1_3:52686722-52686741 | Msa0124740:exon | 35.0% | |
| ! | AAGAACGAAAGGCAGTTTTT+CGG | - | chr1_3:52684827-52684846 | None:intergenic | 35.0% |
| TGATTCGAGAGTTTATCATG+AGG | - | chr1_3:52684922-52684941 | None:intergenic | 35.0% | |
| TAAACTCTCGAATCATGTCA+AGG | + | chr1_3:52684927-52684946 | Msa0124740:CDS | 35.0% | |
| TAGTTCAAGGAATCATCGAA+GGG | + | chr1_3:52684953-52684972 | Msa0124740:CDS | 35.0% | |
| CAACTCGAACTAAACCAATT+CGG | + | chr1_3:52685063-52685082 | Msa0124740:CDS | 35.0% | |
| AACTCGAACTAAACCAATTC+GGG | + | chr1_3:52685064-52685083 | Msa0124740:CDS | 35.0% | |
| CAATGCGAATGTTAAGCAAT+TGG | + | chr1_3:52685098-52685117 | Msa0124740:CDS | 35.0% | |
| GAAAGTTATTGCTATGCAGA+GGG | + | chr1_3:52685290-52685309 | Msa0124740:CDS | 35.0% | |
| !! | GGTTTTTGAGAATCAAAGAG+AGG | + | chr1_3:52685359-52685378 | Msa0124740:CDS | 35.0% |
| ! | TAGTGTTGAGTATGAAACCA+AGG | + | chr1_3:52685569-52685588 | Msa0124740:CDS | 35.0% |
| ! | ATATTTGCATGGACTAACCT+TGG | - | chr1_3:52685589-52685608 | None:intergenic | 35.0% |
| !!! | GTACTGGTTGAAATTTTGGA+TGG | + | chr1_3:52686185-52686204 | Msa0124740:intron | 35.0% |
| AGCAATTCTGTATGAGAAGA+AGG | + | chr1_3:52686260-52686279 | Msa0124740:CDS | 35.0% | |
| GCTATACGCAAAGAAAAAAG+AGG | + | chr1_3:52686353-52686372 | Msa0124740:CDS | 35.0% | |
| CAAAGAAAAAAGAGGCAGAA+GGG | + | chr1_3:52686361-52686380 | Msa0124740:CDS | 35.0% | |
| AATACACTTCTCAATGCACT+TGG | + | chr1_3:52686420-52686439 | Msa0124740:CDS | 35.0% | |
| ! | AAATGACTACACAGCTCTAA+GGG | + | chr1_3:52686443-52686462 | Msa0124740:CDS | 35.0% |
| ! | TTAAGAGCTTTTGTCGGATA+AGG | - | chr1_3:52686703-52686722 | None:intergenic | 35.0% |
| TCCGACAAAAGCTCTTAATT+AGG | + | chr1_3:52686705-52686724 | Msa0124740:exon | 35.0% | |
| GACAAAAGCTCTTAATTAGG+AGG | + | chr1_3:52686708-52686727 | Msa0124740:exon | 35.0% | |
| ATTAGGAGGATGCTTGTATT+AGG | + | chr1_3:52686722-52686741 | Msa0124740:exon | 35.0% | |
| ! | AAGAAATCATGGGTTTTCCC+TGG | + | chr1_3:52684736-52684755 | Msa0124740:CDS | 40.0% |
| ! | ACTTCGAAGGTATAGTTCAC+CGG | - | chr1_3:52684790-52684809 | None:intergenic | 40.0% |
| TCAGTTTAGCGTATTTGAGG+AGG | - | chr1_3:52684894-52684913 | None:intergenic | 40.0% | |
| CATGTCAAGGAACTAGTTCA+AGG | + | chr1_3:52684940-52684959 | Msa0124740:CDS | 40.0% | |
| CTAGTTCAAGGAATCATCGA+AGG | + | chr1_3:52684952-52684971 | Msa0124740:CDS | 40.0% | |
| AGTTCAAGGAATCATCGAAG+GGG | + | chr1_3:52684954-52684973 | Msa0124740:CDS | 40.0% | |
| TGCGAATGTTAAGCAATTGG+TGG | + | chr1_3:52685101-52685120 | Msa0124740:CDS | 40.0% | |
| ! | TTTAGGGCAAAAGACGCAAA+TGG | + | chr1_3:52685152-52685171 | Msa0124740:CDS | 40.0% |
| GCTAAGATGAAAGGTGAAGT+TGG | + | chr1_3:52685210-52685229 | Msa0124740:CDS | 40.0% | |
| !! | TGAAGTTGGCTCGAAATCTA+GGG | + | chr1_3:52685224-52685243 | Msa0124740:CDS | 40.0% |
| GAATGCAGCAAAAATTGACG+CGG | + | chr1_3:52685263-52685282 | Msa0124740:CDS | 40.0% | |
| CGAAAGTTATTGCTATGCAG+AGG | + | chr1_3:52685289-52685308 | Msa0124740:CDS | 40.0% | |
| ! | ACAAGGAGGGATTTAGAGTT+AGG | + | chr1_3:52685325-52685344 | Msa0124740:CDS | 40.0% |
| TAGAGTTAGGACTGAAGTGA+AGG | + | chr1_3:52685338-52685357 | Msa0124740:CDS | 40.0% | |
| AATGTGCCAAGTCTAAATCG+TGG | + | chr1_3:52685913-52685932 | Msa0124740:intron | 40.0% | |
| AGCAAGTGCTATGTTTCGTT+TGG | + | chr1_3:52685987-52686006 | Msa0124740:intron | 40.0% | |
| TTGGATGGTTTAGGTACAAG+AGG | + | chr1_3:52686200-52686219 | Msa0124740:intron | 40.0% | |
| TTTAGGTACAAGAGGCTAAC+TGG | + | chr1_3:52686208-52686227 | Msa0124740:intron | 40.0% | |
| TTAGGTACAAGAGGCTAACT+GGG | + | chr1_3:52686209-52686228 | Msa0124740:intron | 40.0% | |
| GCAAAGAAAAAAGAGGCAGA+AGG | + | chr1_3:52686360-52686379 | Msa0124740:CDS | 40.0% | |
| GAAATGACTACACAGCTCTA+AGG | + | chr1_3:52686442-52686461 | Msa0124740:CDS | 40.0% | |
| ! | GGAATAACGGAAGGTTCTAT+GGG | + | chr1_3:52686582-52686601 | Msa0124740:CDS | 40.0% |
| TCATGGACAGTCTTAAACAG+AGG | - | chr1_3:52686645-52686664 | None:intergenic | 40.0% | |
| ! | AAGAAATCATGGGTTTTCCC+TGG | + | chr1_3:52684736-52684755 | Msa0124740:CDS | 40.0% |
| ! | ACTTCGAAGGTATAGTTCAC+CGG | - | chr1_3:52684790-52684809 | None:intergenic | 40.0% |
| TCAGTTTAGCGTATTTGAGG+AGG | - | chr1_3:52684894-52684913 | None:intergenic | 40.0% | |
| CATGTCAAGGAACTAGTTCA+AGG | + | chr1_3:52684940-52684959 | Msa0124740:CDS | 40.0% | |
| CTAGTTCAAGGAATCATCGA+AGG | + | chr1_3:52684952-52684971 | Msa0124740:CDS | 40.0% | |
| AGTTCAAGGAATCATCGAAG+GGG | + | chr1_3:52684954-52684973 | Msa0124740:CDS | 40.0% | |
| TGCGAATGTTAAGCAATTGG+TGG | + | chr1_3:52685101-52685120 | Msa0124740:CDS | 40.0% | |
| ! | TTTAGGGCAAAAGACGCAAA+TGG | + | chr1_3:52685152-52685171 | Msa0124740:CDS | 40.0% |
| GCTAAGATGAAAGGTGAAGT+TGG | + | chr1_3:52685210-52685229 | Msa0124740:CDS | 40.0% | |
| !! | TGAAGTTGGCTCGAAATCTA+GGG | + | chr1_3:52685224-52685243 | Msa0124740:CDS | 40.0% |
| GAATGCAGCAAAAATTGACG+CGG | + | chr1_3:52685263-52685282 | Msa0124740:CDS | 40.0% | |
| CGAAAGTTATTGCTATGCAG+AGG | + | chr1_3:52685289-52685308 | Msa0124740:CDS | 40.0% | |
| ! | ACAAGGAGGGATTTAGAGTT+AGG | + | chr1_3:52685325-52685344 | Msa0124740:CDS | 40.0% |
| TAGAGTTAGGACTGAAGTGA+AGG | + | chr1_3:52685338-52685357 | Msa0124740:CDS | 40.0% | |
| AATGTGCCAAGTCTAAATCG+TGG | + | chr1_3:52685913-52685932 | Msa0124740:intron | 40.0% | |
| AGCAAGTGCTATGTTTCGTT+TGG | + | chr1_3:52685987-52686006 | Msa0124740:intron | 40.0% | |
| TTGGATGGTTTAGGTACAAG+AGG | + | chr1_3:52686200-52686219 | Msa0124740:intron | 40.0% | |
| TTTAGGTACAAGAGGCTAAC+TGG | + | chr1_3:52686208-52686227 | Msa0124740:intron | 40.0% | |
| TTAGGTACAAGAGGCTAACT+GGG | + | chr1_3:52686209-52686228 | Msa0124740:intron | 40.0% | |
| GCAAAGAAAAAAGAGGCAGA+AGG | + | chr1_3:52686360-52686379 | Msa0124740:CDS | 40.0% | |
| GAAATGACTACACAGCTCTA+AGG | + | chr1_3:52686442-52686461 | Msa0124740:CDS | 40.0% | |
| ! | GGAATAACGGAAGGTTCTAT+GGG | + | chr1_3:52686582-52686601 | Msa0124740:CDS | 40.0% |
| TCATGGACAGTCTTAAACAG+AGG | - | chr1_3:52686645-52686664 | None:intergenic | 40.0% | |
| ACTCATGGCTTGAACTTCGA+AGG | - | chr1_3:52684803-52684822 | None:intergenic | 45.0% | |
| AGGACCAATTGTGAAGACAG+CGG | - | chr1_3:52684851-52684870 | None:intergenic | 45.0% | |
| ! | ACCATGGAAGAGGTTTTCAG+AGG | + | chr1_3:52685003-52685022 | Msa0124740:CDS | 45.0% |
| ! | TCCTCTGAAAACCTCTTCCA+TGG | - | chr1_3:52685007-52685026 | None:intergenic | 45.0% |
| GTGGCAGAAGCTAAGATGAA+AGG | + | chr1_3:52685201-52685220 | Msa0124740:CDS | 45.0% | |
| !! | GTGAAGTTGGCTCGAAATCT+AGG | + | chr1_3:52685223-52685242 | Msa0124740:CDS | 45.0% |
| GAATCAAAGAGAGGCTGAAG+TGG | + | chr1_3:52685368-52685387 | Msa0124740:CDS | 45.0% | |
| ! | TGAGTTGGCGAAGAAGAAAG+CGG | + | chr1_3:52685404-52685423 | Msa0124740:CDS | 45.0% |
| !! | TGCTAAAGCTGTGGCTCTAA+GGG | + | chr1_3:52685464-52685483 | Msa0124740:CDS | 45.0% |
| AGGGATCCACGATTTAGACT+TGG | - | chr1_3:52685922-52685941 | None:intergenic | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | + | chr1_3:52686266-52686285 | Msa0124740:CDS | 45.0% | |
| CAGAAGGGATTGTGACACTT+GGG | + | chr1_3:52686376-52686395 | Msa0124740:CDS | 45.0% | |
| TGGTGGCATGTTTCAAGAGA+TGG | + | chr1_3:52686482-52686501 | Msa0124740:CDS | 45.0% | |
| GATGGCTAAGATCAATGCTG+AGG | + | chr1_3:52686500-52686519 | Msa0124740:CDS | 45.0% | |
| TGGACTAATGGAGGTGACAA+TGG | + | chr1_3:52686555-52686574 | Msa0124740:CDS | 45.0% | |
| ACTAATGGAGGTGACAATGG+AGG | + | chr1_3:52686558-52686577 | Msa0124740:CDS | 45.0% | |
| TGACAATGGAGGCGGAATAA+CGG | + | chr1_3:52686569-52686588 | Msa0124740:CDS | 45.0% | |
| ! | CGGAATAACGGAAGGTTCTA+TGG | + | chr1_3:52686581-52686600 | Msa0124740:CDS | 45.0% |
| AGGTTCTATGGGCATGAAAG+AGG | + | chr1_3:52686593-52686612 | Msa0124740:CDS | 45.0% | |
| TGGACAGTCTTAAACAGAGG+TGG | - | chr1_3:52686642-52686661 | None:intergenic | 45.0% | |
| AAGACTGTCCATGAGCAAAC+AGG | + | chr1_3:52686651-52686670 | Msa0124740:CDS | 45.0% | |
| ACTCATGGCTTGAACTTCGA+AGG | - | chr1_3:52684803-52684822 | None:intergenic | 45.0% | |
| AGGACCAATTGTGAAGACAG+CGG | - | chr1_3:52684851-52684870 | None:intergenic | 45.0% | |
| ! | ACCATGGAAGAGGTTTTCAG+AGG | + | chr1_3:52685003-52685022 | Msa0124740:CDS | 45.0% |
| ! | TCCTCTGAAAACCTCTTCCA+TGG | - | chr1_3:52685007-52685026 | None:intergenic | 45.0% |
| GTGGCAGAAGCTAAGATGAA+AGG | + | chr1_3:52685201-52685220 | Msa0124740:CDS | 45.0% | |
| !! | GTGAAGTTGGCTCGAAATCT+AGG | + | chr1_3:52685223-52685242 | Msa0124740:CDS | 45.0% |
| GAATCAAAGAGAGGCTGAAG+TGG | + | chr1_3:52685368-52685387 | Msa0124740:CDS | 45.0% | |
| ! | TGAGTTGGCGAAGAAGAAAG+CGG | + | chr1_3:52685404-52685423 | Msa0124740:CDS | 45.0% |
| !! | TGCTAAAGCTGTGGCTCTAA+GGG | + | chr1_3:52685464-52685483 | Msa0124740:CDS | 45.0% |
| AGGGATCCACGATTTAGACT+TGG | - | chr1_3:52685922-52685941 | None:intergenic | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | + | chr1_3:52686266-52686285 | Msa0124740:CDS | 45.0% | |
| CAGAAGGGATTGTGACACTT+GGG | + | chr1_3:52686376-52686395 | Msa0124740:CDS | 45.0% | |
| TGGTGGCATGTTTCAAGAGA+TGG | + | chr1_3:52686482-52686501 | Msa0124740:CDS | 45.0% | |
| GATGGCTAAGATCAATGCTG+AGG | + | chr1_3:52686500-52686519 | Msa0124740:CDS | 45.0% | |
| TGGACTAATGGAGGTGACAA+TGG | + | chr1_3:52686555-52686574 | Msa0124740:CDS | 45.0% | |
| ACTAATGGAGGTGACAATGG+AGG | + | chr1_3:52686558-52686577 | Msa0124740:CDS | 45.0% | |
| TGACAATGGAGGCGGAATAA+CGG | + | chr1_3:52686569-52686588 | Msa0124740:CDS | 45.0% | |
| ! | CGGAATAACGGAAGGTTCTA+TGG | + | chr1_3:52686581-52686600 | Msa0124740:CDS | 45.0% |
| AGGTTCTATGGGCATGAAAG+AGG | + | chr1_3:52686593-52686612 | Msa0124740:CDS | 45.0% | |
| TGGACAGTCTTAAACAGAGG+TGG | - | chr1_3:52686642-52686661 | None:intergenic | 45.0% | |
| AAGACTGTCCATGAGCAAAC+AGG | + | chr1_3:52686651-52686670 | Msa0124740:CDS | 45.0% | |
| !!! | TTATTTTTTAATATGTTATA+TGG | + | chr1_3:52685760-52685779 | Msa0124740:intron | 5.0% |
| !!! | TTATTTTTTAATATGTTATA+TGG | + | chr1_3:52685760-52685779 | Msa0124740:intron | 5.0% |
| !! | AGCAAAAGCATCCGAGTACC+TGG | + | chr1_3:52684675-52684694 | Msa0124740:CDS | 50.0% |
| TCCGAGTACCTGGTGATAAC+CGG | + | chr1_3:52684685-52684704 | Msa0124740:CDS | 50.0% | |
| TCCGGTTATCACCAGGTACT+CGG | - | chr1_3:52684689-52684708 | None:intergenic | 50.0% | |
| GATGTCTTCGATTCCAGCTC+CGG | - | chr1_3:52684707-52684726 | None:intergenic | 50.0% | |
| AGACGGTGCAAGATTGACCA+GGG | - | chr1_3:52684756-52684775 | None:intergenic | 50.0% | |
| AAGACGGTGCAAGATTGACC+AGG | - | chr1_3:52684757-52684776 | None:intergenic | 50.0% | |
| AGGTATAGTTCACCGGTGAG+AGG | - | chr1_3:52684783-52684802 | None:intergenic | 50.0% | |
| !! | AGGCAGTTTTTCGGCACTCA+TGG | - | chr1_3:52684818-52684837 | None:intergenic | 50.0% |
| AAGACAGCGGGAAGAACGAA+AGG | - | chr1_3:52684838-52684857 | None:intergenic | 50.0% | |
| CTTCCCGCTGTCTTCACAAT+TGG | + | chr1_3:52684844-52684863 | Msa0124740:CDS | 50.0% | |
| GGACCAATTGTGAAGACAGC+GGG | - | chr1_3:52684850-52684869 | None:intergenic | 50.0% | |
| CTTTCCTGATCGTCAACACG+AGG | - | chr1_3:52684871-52684890 | None:intergenic | 50.0% | |
| TGCTTCGATGACCATGGAAG+AGG | + | chr1_3:52684993-52685012 | Msa0124740:CDS | 50.0% | |
| ! | AAGCAATTGGTGGATGTGCC+TGG | + | chr1_3:52685111-52685130 | Msa0124740:CDS | 50.0% |
| TGGAAGCAGCGAATCAAGCT+AGG | + | chr1_3:52685172-52685191 | Msa0124740:CDS | 50.0% | |
| GGAAGCAGCGAATCAAGCTA+GGG | + | chr1_3:52685173-52685192 | Msa0124740:CDS | 50.0% | |
| GAATCAAGCTAGGGTTGACG+TGG | + | chr1_3:52685182-52685201 | Msa0124740:CDS | 50.0% | |
| !! | GTTGGCTCGAAATCTAGGGA+AGG | + | chr1_3:52685228-52685247 | Msa0124740:CDS | 50.0% |
| GTTATTGCTATGCAGAGGGC+TGG | + | chr1_3:52685294-52685313 | Msa0124740:CDS | 50.0% | |
| GGCTGAGGCTAATTCTGAGT+TGG | + | chr1_3:52685389-52685408 | Msa0124740:CDS | 50.0% | |
| ! | GAAGAAAGCGGCTTGGACTA+AGG | + | chr1_3:52685416-52685435 | Msa0124740:CDS | 50.0% |
| ! | CTGCTAAAGCTGTGGCTCTA+AGG | + | chr1_3:52685463-52685482 | Msa0124740:CDS | 50.0% |
| CTCAACCTCACCTTGCAACT+CGG | - | chr1_3:52685493-52685512 | None:intergenic | 50.0% | |
| AGTTGCAAGGTGAGGTTGAG+AGG | + | chr1_3:52685493-52685512 | Msa0124740:CDS | 50.0% | |
| GCAGAAGGGATTGTGACACT+TGG | + | chr1_3:52686375-52686394 | Msa0124740:CDS | 50.0% | |
| GTGACACTTGGGAATGCTCA+AGG | + | chr1_3:52686387-52686406 | Msa0124740:CDS | 50.0% | |
| ATCAATGCTGAGGCAGTACG+TGG | + | chr1_3:52686510-52686529 | Msa0124740:CDS | 50.0% | |
| AATGGAGGTGACAATGGAGG+CGG | + | chr1_3:52686561-52686580 | Msa0124740:CDS | 50.0% | |
| ! | AATGGAGGCGGAATAACGGA+AGG | + | chr1_3:52686573-52686592 | Msa0124740:CDS | 50.0% |
| ATGGGCATGAAAGAGGTTGC+TGG | + | chr1_3:52686600-52686619 | Msa0124740:CDS | 50.0% | |
| GCAACATGCCTGTTTGCTCA+TGG | - | chr1_3:52686662-52686681 | None:intergenic | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | + | chr1_3:52686675-52686694 | Msa0124740:CDS | 50.0% | |
| GATAAGGTTCCCATCCAAGC+AGG | - | chr1_3:52686687-52686706 | None:intergenic | 50.0% | |
| !! | AGCAAAAGCATCCGAGTACC+TGG | + | chr1_3:52684675-52684694 | Msa0124740:CDS | 50.0% |
| TCCGAGTACCTGGTGATAAC+CGG | + | chr1_3:52684685-52684704 | Msa0124740:CDS | 50.0% | |
| TCCGGTTATCACCAGGTACT+CGG | - | chr1_3:52684689-52684708 | None:intergenic | 50.0% | |
| GATGTCTTCGATTCCAGCTC+CGG | - | chr1_3:52684707-52684726 | None:intergenic | 50.0% | |
| AGACGGTGCAAGATTGACCA+GGG | - | chr1_3:52684756-52684775 | None:intergenic | 50.0% | |
| AAGACGGTGCAAGATTGACC+AGG | - | chr1_3:52684757-52684776 | None:intergenic | 50.0% | |
| AGGTATAGTTCACCGGTGAG+AGG | - | chr1_3:52684783-52684802 | None:intergenic | 50.0% | |
| !! | AGGCAGTTTTTCGGCACTCA+TGG | - | chr1_3:52684818-52684837 | None:intergenic | 50.0% |
| AAGACAGCGGGAAGAACGAA+AGG | - | chr1_3:52684838-52684857 | None:intergenic | 50.0% | |
| CTTCCCGCTGTCTTCACAAT+TGG | + | chr1_3:52684844-52684863 | Msa0124740:CDS | 50.0% | |
| GGACCAATTGTGAAGACAGC+GGG | - | chr1_3:52684850-52684869 | None:intergenic | 50.0% | |
| CTTTCCTGATCGTCAACACG+AGG | - | chr1_3:52684871-52684890 | None:intergenic | 50.0% | |
| TGCTTCGATGACCATGGAAG+AGG | + | chr1_3:52684993-52685012 | Msa0124740:CDS | 50.0% | |
| ! | AAGCAATTGGTGGATGTGCC+TGG | + | chr1_3:52685111-52685130 | Msa0124740:CDS | 50.0% |
| TGGAAGCAGCGAATCAAGCT+AGG | + | chr1_3:52685172-52685191 | Msa0124740:CDS | 50.0% | |
| GGAAGCAGCGAATCAAGCTA+GGG | + | chr1_3:52685173-52685192 | Msa0124740:CDS | 50.0% | |
| GAATCAAGCTAGGGTTGACG+TGG | + | chr1_3:52685182-52685201 | Msa0124740:CDS | 50.0% | |
| !! | GTTGGCTCGAAATCTAGGGA+AGG | + | chr1_3:52685228-52685247 | Msa0124740:CDS | 50.0% |
| GTTATTGCTATGCAGAGGGC+TGG | + | chr1_3:52685294-52685313 | Msa0124740:CDS | 50.0% | |
| GGCTGAGGCTAATTCTGAGT+TGG | + | chr1_3:52685389-52685408 | Msa0124740:CDS | 50.0% | |
| ! | GAAGAAAGCGGCTTGGACTA+AGG | + | chr1_3:52685416-52685435 | Msa0124740:CDS | 50.0% |
| ! | CTGCTAAAGCTGTGGCTCTA+AGG | + | chr1_3:52685463-52685482 | Msa0124740:CDS | 50.0% |
| CTCAACCTCACCTTGCAACT+CGG | - | chr1_3:52685493-52685512 | None:intergenic | 50.0% | |
| AGTTGCAAGGTGAGGTTGAG+AGG | + | chr1_3:52685493-52685512 | Msa0124740:CDS | 50.0% | |
| GCAGAAGGGATTGTGACACT+TGG | + | chr1_3:52686375-52686394 | Msa0124740:CDS | 50.0% | |
| GTGACACTTGGGAATGCTCA+AGG | + | chr1_3:52686387-52686406 | Msa0124740:CDS | 50.0% | |
| ATCAATGCTGAGGCAGTACG+TGG | + | chr1_3:52686510-52686529 | Msa0124740:CDS | 50.0% | |
| AATGGAGGTGACAATGGAGG+CGG | + | chr1_3:52686561-52686580 | Msa0124740:CDS | 50.0% | |
| ! | AATGGAGGCGGAATAACGGA+AGG | + | chr1_3:52686573-52686592 | Msa0124740:CDS | 50.0% |
| ATGGGCATGAAAGAGGTTGC+TGG | + | chr1_3:52686600-52686619 | Msa0124740:CDS | 50.0% | |
| GCAACATGCCTGTTTGCTCA+TGG | - | chr1_3:52686662-52686681 | None:intergenic | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | + | chr1_3:52686675-52686694 | Msa0124740:CDS | 50.0% | |
| GATAAGGTTCCCATCCAAGC+AGG | - | chr1_3:52686687-52686706 | None:intergenic | 50.0% | |
| TACCTGGTGATAACCGGAGC+TGG | + | chr1_3:52684691-52684710 | Msa0124740:CDS | 55.0% | |
| TTCCAGCTCCGGTTATCACC+AGG | - | chr1_3:52684696-52684715 | None:intergenic | 55.0% | |
| ! | TGGTCCTCGTGTTGACGATC+AGG | + | chr1_3:52684864-52684883 | Msa0124740:CDS | 55.0% |
| GCTGGAGAGAGTGACAAGGA+GGG | + | chr1_3:52685312-52685331 | Msa0124740:CDS | 55.0% | |
| AAGAGAGGCTGAAGTGGCTG+AGG | + | chr1_3:52685374-52685393 | Msa0124740:CDS | 55.0% | |
| TGGCGAAGAAGAAAGCGGCT+TGG | + | chr1_3:52685409-52685428 | Msa0124740:CDS | 55.0% | |
| ! | GAAAGCGGCTTGGACTAAGG+CGG | + | chr1_3:52685419-52685438 | Msa0124740:CDS | 55.0% |
| TTGGACTAAGGCGGCTCAAG+TGG | + | chr1_3:52685428-52685447 | Msa0124740:CDS | 55.0% | |
| AGTCGAGGCTGCTAAAGCTG+TGG | + | chr1_3:52685455-52685474 | Msa0124740:CDS | 55.0% | |
| CTAAGGGAAGCCGAGTTGCA+AGG | + | chr1_3:52685480-52685499 | Msa0124740:CDS | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | + | chr1_3:52686674-52686693 | Msa0124740:CDS | 55.0% | |
| AAGGTTCCCATCCAAGCAGG+AGG | - | chr1_3:52686684-52686703 | None:intergenic | 55.0% | |
| TACCTGGTGATAACCGGAGC+TGG | + | chr1_3:52684691-52684710 | Msa0124740:CDS | 55.0% | |
| TTCCAGCTCCGGTTATCACC+AGG | - | chr1_3:52684696-52684715 | None:intergenic | 55.0% | |
| ! | TGGTCCTCGTGTTGACGATC+AGG | + | chr1_3:52684864-52684883 | Msa0124740:CDS | 55.0% |
| GCTGGAGAGAGTGACAAGGA+GGG | + | chr1_3:52685312-52685331 | Msa0124740:CDS | 55.0% | |
| AAGAGAGGCTGAAGTGGCTG+AGG | + | chr1_3:52685374-52685393 | Msa0124740:CDS | 55.0% | |
| TGGCGAAGAAGAAAGCGGCT+TGG | + | chr1_3:52685409-52685428 | Msa0124740:CDS | 55.0% | |
| ! | GAAAGCGGCTTGGACTAAGG+CGG | + | chr1_3:52685419-52685438 | Msa0124740:CDS | 55.0% |
| TTGGACTAAGGCGGCTCAAG+TGG | + | chr1_3:52685428-52685447 | Msa0124740:CDS | 55.0% | |
| AGTCGAGGCTGCTAAAGCTG+TGG | + | chr1_3:52685455-52685474 | Msa0124740:CDS | 55.0% | |
| CTAAGGGAAGCCGAGTTGCA+AGG | + | chr1_3:52685480-52685499 | Msa0124740:CDS | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | + | chr1_3:52686674-52686693 | Msa0124740:CDS | 55.0% | |
| AAGGTTCCCATCCAAGCAGG+AGG | - | chr1_3:52686684-52686703 | None:intergenic | 55.0% | |
| CACCGTCTTCGACCTCTCAC+CGG | + | chr1_3:52684768-52684787 | Msa0124740:CDS | 60.0% | |
| CACCGGTGAGAGGTCGAAGA+CGG | - | chr1_3:52684773-52684792 | None:intergenic | 60.0% | |
| CCATGGTCATCGAAGCAGCG+AGG | - | chr1_3:52684990-52685009 | None:intergenic | 60.0% | |
| CCTCGCTGCTTCGATGACCA+TGG | + | chr1_3:52684987-52685006 | Msa0124740:CDS | 60.0% | |
| GAGGGCTGGAGAGAGTGACA+AGG | + | chr1_3:52685308-52685327 | Msa0124740:CDS | 60.0% | |
| GGCTGGAGAGAGTGACAAGG+AGG | + | chr1_3:52685311-52685330 | Msa0124740:CDS | 60.0% | |
| GGCTCAAGTGGCTGAAGTCG+AGG | + | chr1_3:52685440-52685459 | Msa0124740:CDS | 60.0% | |
| GGAAGCCGAGTTGCAAGGTG+AGG | + | chr1_3:52685485-52685504 | Msa0124740:CDS | 60.0% | |
| CAGGCATGTTGCCTCCTGCT+TGG | + | chr1_3:52686670-52686689 | Msa0124740:CDS | 60.0% | |
| CACCGTCTTCGACCTCTCAC+CGG | + | chr1_3:52684768-52684787 | Msa0124740:CDS | 60.0% | |
| CACCGGTGAGAGGTCGAAGA+CGG | - | chr1_3:52684773-52684792 | None:intergenic | 60.0% | |
| CCATGGTCATCGAAGCAGCG+AGG | - | chr1_3:52684990-52685009 | None:intergenic | 60.0% | |
| CCTCGCTGCTTCGATGACCA+TGG | + | chr1_3:52684987-52685006 | Msa0124740:CDS | 60.0% | |
| GAGGGCTGGAGAGAGTGACA+AGG | + | chr1_3:52685308-52685327 | Msa0124740:CDS | 60.0% | |
| GGCTGGAGAGAGTGACAAGG+AGG | + | chr1_3:52685311-52685330 | Msa0124740:CDS | 60.0% | |
| GGCTCAAGTGGCTGAAGTCG+AGG | + | chr1_3:52685440-52685459 | Msa0124740:CDS | 60.0% | |
| GGAAGCCGAGTTGCAAGGTG+AGG | + | chr1_3:52685485-52685504 | Msa0124740:CDS | 60.0% | |
| CAGGCATGTTGCCTCCTGCT+TGG | + | chr1_3:52686670-52686689 | Msa0124740:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 52684609 | 52686830 | 52684609 | ID=Msa0124740;Name=Msa0124740 |
| chr1_3 | mRNA | 52684609 | 52686830 | 52684609 | ID=Msa0124740-mRNA-1;Parent=Msa0124740;Name=Msa0124740-mRNA-1;_AED=0.01;_eAED=0.01;_QI=55|1|1|1|1|1|2|108|478 |
| chr1_3 | exon | 52684609 | 52685590 | 52684609 | ID=Msa0124740-mRNA-1:exon:16160;Parent=Msa0124740-mRNA-1 |
| chr1_3 | exon | 52686213 | 52686830 | 52686213 | ID=Msa0124740-mRNA-1:exon:16161;Parent=Msa0124740-mRNA-1 |
| chr1_3 | five_prime_UTR | 52684609 | 52684663 | 52684609 | ID=Msa0124740-mRNA-1:five_prime_utr;Parent=Msa0124740-mRNA-1 |
| chr1_3 | CDS | 52684664 | 52685590 | 52684664 | ID=Msa0124740-mRNA-1:cds;Parent=Msa0124740-mRNA-1 |
| chr1_3 | CDS | 52686213 | 52686722 | 52686213 | ID=Msa0124740-mRNA-1:cds;Parent=Msa0124740-mRNA-1 |
| chr1_3 | three_prime_UTR | 52686723 | 52686830 | 52686723 | ID=Msa0124740-mRNA-1:three_prime_utr;Parent=Msa0124740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
