AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0124810

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0124810 MtrunA17_Chr1g0186201 97.280 478 9 1 1 478 1 474 0.0 943
Msa0124810 MtrunA17_Chr3g0137321 92.050 478 38 0 1 478 1 478 0.0 906
Msa0124810 MtrunA17_Chr3g0137261 91.423 478 41 0 1 478 3 480 0.0 874
Msa0124810 MtrunA17_Chr3g0137341 92.050 478 34 2 1 478 1 474 0.0 872
Msa0124810 MtrunA17_Chr1g0192071 88.703 478 46 1 1 478 3 472 0.0 836
Msa0124810 MtrunA17_Chr3g0137271 91.405 477 37 2 1 477 1 473 0.0 835
Msa0124810 MtrunA17_Chr1g0212211 79.323 532 53 6 1 478 1 529 0.0 796
Msa0124810 MtrunA17_Chr8g0364981 83.575 414 42 4 52 464 1 389 0.0 624
Msa0124810 MtrunA17_Chr1g0184991 97.976 247 5 0 1 247 1 247 1.23e-180 505
Msa0124810 MtrunA17_Chr1g0184981 96.392 194 4 1 285 478 1 191 1.28e-131 378
Msa0124810 MtrunA17_Chr3g0137301 89.637 193 20 0 285 477 1 193 5.07e-122 354
Msa0124810 MtrunA17_Chr3g0137311 86.667 135 18 0 1 135 19 153 8.35e-82 250
Msa0124810 MtrunA17_Chr3g0110461 83.333 42 7 0 113 154 1 42 2.07e-16 73.2
Msa0124810 MtrunA17_Chr8g0364991 69.231 39 12 0 1 39 1 39 5.05e-13 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0124810 AT5G25260.1 75.105 474 106 2 1 474 1 462 0.0 737
Msa0124810 AT5G25250.1 75.053 473 104 2 1 473 1 459 0.0 726
Msa0124810 AT5G64870.1 71.398 472 124 1 2 473 3 463 0.0 660

Find 120 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGAATATTTCTCATATTT+AGG 0.103686 1_3:-52710202 Msa0124810:CDS
TTGAACCTAATATTAGTATT+TGG 0.194188 1_3:-52708793 Msa0124810:CDS
CGGAATAACGGAAGGTTCTA+TGG 0.257659 1_3:-52708747 Msa0124810:CDS
CTGCTAAAGCTGTGGCTCTA+AGG 0.272737 1_3:-52709874 Msa0124810:CDS
CACATGTATCACACAATAAA+AGG 0.277974 1_3:+52708568 None:intergenic
AGGGATTACTTGATGATAAA+TGG 0.295084 1_3:-52708866 Msa0124810:CDS
ATGAATATTTCTCATATTTA+GGG 0.305111 1_3:-52710201 Msa0124810:CDS
TTAGTCCAAATACTAATATT+AGG 0.310528 1_3:+52708788 None:intergenic
TCCGACAAAAGCTCTTAATT+AGG 0.314591 1_3:-52708623 Msa0124810:exon
GTGAAGTTGGCTCGAAATCT+AGG 0.314615 1_3:-52710114 Msa0124810:CDS
TTTAGGTACAAGAGGCTAAC+TGG 0.315931 1_3:-52709120 Msa0124810:intron
CTTCCCGCTGTCTTCACAAT+TGG 0.324959 1_3:-52710493 Msa0124810:CDS
ATTAGGAGGATGCTTGTATT+AGG 0.327156 1_3:-52708606 Msa0124810:three_prime_UTR
ACAAGGAGGGATTTAGAGTT+AGG 0.330276 1_3:-52710012 Msa0124810:CDS
AATATTAGTATTTGGACTAA+TGG 0.332771 1_3:-52708785 Msa0124810:CDS
CATGTTGCCTCCTGCTTGGA+TGG 0.342126 1_3:-52708654 Msa0124810:CDS
TGTAAATCAATAACCCGAAT+TGG 0.349196 1_3:+52710260 None:intergenic
GAAATGACTACACAGCTCTA+AGG 0.365727 1_3:-52708886 Msa0124810:CDS
CAATGCGAATGTTAAGCAAT+TGG 0.388576 1_3:-52710239 Msa0124810:CDS
CAACTCGAACTAAACCAATT+CGG 0.390858 1_3:-52710274 Msa0124810:CDS
ATCAAAATCAAACGATGTAC+AGG 0.393868 1_3:-52710687 Msa0124810:exon
TGGTCCTCGTGTTGACGATC+AGG 0.407219 1_3:-52710473 Msa0124810:CDS
TCAAACTTGCAAAGAAATCA+TGG 0.416941 1_3:-52710612 Msa0124810:CDS
AACTCGAACTAAACCAATTC+GGG 0.427281 1_3:-52710273 Msa0124810:CDS
TCCGAGTACCTGGTGATAAC+CGG 0.437519 1_3:-52710652 Msa0124810:CDS
GATGTCTTCGATTCCAGCTC+CGG 0.437947 1_3:+52710633 None:intergenic
GAAGAAAGCGGCTTGGACTA+AGG 0.439613 1_3:-52709921 Msa0124810:CDS
AGCAATTCTGTATGAGAAGA+AGG 0.462456 1_3:-52709068 Msa0124810:CDS
AAATCAGTTTAGCGTATTTG+AGG 0.472961 1_3:+52710443 None:intergenic
TTTAGGGCAAAAGACGCAAA+TGG 0.491891 1_3:-52710185 Msa0124810:CDS
AAGACTGTCCATGAGCAAAC+AGG 0.492575 1_3:-52708677 Msa0124810:CDS
TGGAAGCAGCGAATCAAGCT+AGG 0.499263 1_3:-52710165 Msa0124810:CDS
TTGGACTAAGGCGGCTCAAG+TGG 0.501148 1_3:-52709909 Msa0124810:CDS
TGCTAAAGCTGTGGCTCTAA+GGG 0.501192 1_3:-52709873 Msa0124810:CDS
CAGGCATGTTGCCTCCTGCT+TGG 0.503335 1_3:-52708658 Msa0124810:CDS
TGCTTCGATGACCATGGAAG+AGG 0.508530 1_3:-52710344 Msa0124810:CDS
AGCAAAAGCATCCGAGTACC+TGG 0.509436 1_3:-52710662 Msa0124810:CDS
TAGAGTTAGGACTGAAGTGA+AGG 0.517399 1_3:-52709999 Msa0124810:CDS
GCTAAGATGAAAGGTGAAGT+TGG 0.517494 1_3:-52710127 Msa0124810:CDS
CATGTCAAGGAACTAGTTCA+AGG 0.517510 1_3:-52710397 Msa0124810:CDS
GCAACATGCCTGTTTGCTCA+TGG 0.521020 1_3:+52708669 None:intergenic
ATGTTGCCTCCTGCTTGGAT+GGG 0.522936 1_3:-52708653 Msa0124810:CDS
GTTATTGCTATGCAGAGGGC+TGG 0.525373 1_3:-52710043 Msa0124810:CDS
TACCTGGTGATAACCGGAGC+TGG 0.525647 1_3:-52710646 Msa0124810:CDS
ATGGGCATGAAAGAGGTTGC+TGG 0.526365 1_3:-52708728 Msa0124810:CDS
AAGCAATTGGTGGATGTGCC+TGG 0.526695 1_3:-52710226 Msa0124810:CDS
TCCTCTGAAAACCTCTTCCA+TGG 0.530446 1_3:+52710333 None:intergenic
CGAAAGTTATTGCTATGCAG+AGG 0.532272 1_3:-52710048 Msa0124810:CDS
GGCTCAAGTGGCTGAAGTCG+AGG 0.533715 1_3:-52709897 Msa0124810:CDS
ATTAGTATTTGGACTAATGG+AGG 0.534214 1_3:-52708782 Msa0124810:CDS
TTCCAGCTCCGGTTATCACC+AGG 0.538435 1_3:+52710644 None:intergenic
TGGTGGCATGTTTCAAGAGA+TGG 0.539247 1_3:-52708846 Msa0124810:CDS
GACAAAAGCTCTTAATTAGG+AGG 0.540934 1_3:-52708620 Msa0124810:exon
TCCGGTTATCACCAGGTACT+CGG 0.542656 1_3:+52710651 None:intergenic
GGCTGAGGCTAATTCTGAGT+TGG 0.544080 1_3:-52709948 Msa0124810:CDS
TGACAATGGAGGCGGAATAA+CGG 0.546090 1_3:-52708759 Msa0124810:CDS
GCAGAAGGGATTGTGACACT+TGG 0.546780 1_3:-52708953 Msa0124810:CDS
CACCGTCTTCGACCTCTCAC+CGG 0.548854 1_3:-52710569 Msa0124810:CDS
GATAAGGTTCCCATCCAAGC+AGG 0.550974 1_3:+52708644 None:intergenic
AATACACTTCTCAATGCACT+TGG 0.557121 1_3:-52708908 Msa0124810:CDS
AAGAGAGGCTGAAGTGGCTG+AGG 0.558698 1_3:-52709963 Msa0124810:CDS
TTGGATGGTTTAGGTACAAG+AGG 0.561865 1_3:-52709128 Msa0124810:intron
CAAACTTGCAAAGAAATCAT+GGG 0.562132 1_3:-52710611 Msa0124810:CDS
AGGTTCTATGGGCATGAAAG+AGG 0.562875 1_3:-52708735 Msa0124810:CDS
TGCGAATGTTAAGCAATTGG+TGG 0.563120 1_3:-52710236 Msa0124810:CDS
GGACCAATTGTGAAGACAGC+GGG 0.564372 1_3:+52710490 None:intergenic
CTCAACCTCACCTTGCAACT+CGG 0.566348 1_3:+52709847 None:intergenic
GGAATAACGGAAGGTTCTAT+GGG 0.567693 1_3:-52708746 Msa0124810:CDS
CCTCGCTGCTTCGATGACCA+TGG 0.570615 1_3:-52710350 Msa0124810:CDS
ACTTCGAAGGTATAGTTCAC+CGG 0.571447 1_3:+52710550 None:intergenic
AAGACGGTGCAAGATTGACC+AGG 0.574032 1_3:+52710583 None:intergenic
AGGTATAGTTCACCGGTGAG+AGG 0.574045 1_3:+52710557 None:intergenic
AAATGACTACACAGCTCTAA+GGG 0.574906 1_3:-52708885 Msa0124810:CDS
AGTTGCAAGGTGAGGTTGAG+AGG 0.575856 1_3:-52709844 Msa0124810:CDS
TTAGGTACAAGAGGCTAACT+GGG 0.579786 1_3:-52709119 Msa0124810:intron
TGAAGTTGGCTCGAAATCTA+GGG 0.579862 1_3:-52710113 Msa0124810:CDS
GTGACACTTGGGAATGCTCA+AGG 0.583871 1_3:-52708941 Msa0124810:CDS
TGGCGAAGAAGAAAGCGGCT+TGG 0.584288 1_3:-52709928 Msa0124810:CDS
TCAGTTTAGCGTATTTGAGG+AGG 0.587438 1_3:+52710446 None:intergenic
GAATCAAAGAGAGGCTGAAG+TGG 0.589954 1_3:-52709969 Msa0124810:CDS
CTAAGGGAAGCCGAGTTGCA+AGG 0.593610 1_3:-52709857 Msa0124810:CDS
CAGAAGGGATTGTGACACTT+GGG 0.598815 1_3:-52708952 Msa0124810:CDS
TCTGTATGAGAAGAAGGCAG+AGG 0.600808 1_3:-52709062 Msa0124810:CDS
ACTCATGGCTTGAACTTCGA+AGG 0.601319 1_3:+52710537 None:intergenic
AATGGAGGTGACAATGGAGG+CGG 0.607583 1_3:-52708767 Msa0124810:CDS
TGGACTAATGGAGGTGACAA+TGG 0.609237 1_3:-52708773 Msa0124810:CDS
GCTGGAGAGAGTGACAAGGA+GGG 0.609527 1_3:-52710025 Msa0124810:CDS
CTAGTTCAAGGAATCATCGA+AGG 0.612313 1_3:-52710385 Msa0124810:CDS
GTGGCAGAAGCTAAGATGAA+AGG 0.614706 1_3:-52710136 Msa0124810:CDS
GGCTGGAGAGAGTGACAAGG+AGG 0.627665 1_3:-52710026 Msa0124810:CDS
CACCGGTGAGAGGTCGAAGA+CGG 0.628279 1_3:+52710567 None:intergenic
AAGACAGCGGGAAGAACGAA+AGG 0.630029 1_3:+52710502 None:intergenic
GGAAGCAGCGAATCAAGCTA+GGG 0.630802 1_3:-52710164 Msa0124810:CDS
TAGTTCAAGGAATCATCGAA+GGG 0.630851 1_3:-52710384 Msa0124810:CDS
GAAAGTTATTGCTATGCAGA+GGG 0.630907 1_3:-52710047 Msa0124810:CDS
ATCAATGCTGAGGCAGTACG+TGG 0.635980 1_3:-52708818 Msa0124810:CDS
TATGAGAAATATTCATGACC+AGG 0.636387 1_3:+52710208 None:intergenic
TCAAAATCAAACGATGTACA+GGG 0.641066 1_3:-52710686 Msa0124810:exon
TAGTGTTGAGTATGAAACCA+AGG 0.644971 1_3:-52709768 Msa0124810:intron
GAGGGCTGGAGAGAGTGACA+AGG 0.646522 1_3:-52710029 Msa0124810:CDS
GGAAGCCGAGTTGCAAGGTG+AGG 0.648282 1_3:-52709852 Msa0124810:CDS
TGAGTTGGCGAAGAAGAAAG+CGG 0.653130 1_3:-52709933 Msa0124810:CDS
TAAACTCTCGAATCATGTCA+AGG 0.655320 1_3:-52710410 Msa0124810:CDS
TGGACAGTCTTAAACAGAGG+TGG 0.656626 1_3:+52708689 None:intergenic
GATTACTTGATGATAAATGG+TGG 0.658453 1_3:-52708863 Msa0124810:CDS
TCATGGACAGTCTTAAACAG+AGG 0.660499 1_3:+52708686 None:intergenic
AGTCGAGGCTGCTAAAGCTG+TGG 0.666475 1_3:-52709882 Msa0124810:CDS
AATGGAGGCGGAATAACGGA+AGG 0.668536 1_3:-52708755 Msa0124810:CDS
AAGGTTCCCATCCAAGCAGG+AGG 0.669932 1_3:+52708647 None:intergenic
GTTGGCTCGAAATCTAGGGA+AGG 0.671253 1_3:-52710109 Msa0124810:CDS
ACTAATGGAGGTGACAATGG+AGG 0.677352 1_3:-52708770 Msa0124810:CDS
TGATTCGAGAGTTTATCATG+AGG 0.680428 1_3:+52710418 None:intergenic
GATGGCTAAGATCAATGCTG+AGG 0.682349 1_3:-52708828 Msa0124810:CDS
GAATCAAGCTAGGGTTGACG+TGG 0.682564 1_3:-52710155 Msa0124810:CDS
CTTTCCTGATCGTCAACACG+AGG 0.689163 1_3:+52710469 None:intergenic
AGACGGTGCAAGATTGACCA+GGG 0.716272 1_3:+52710584 None:intergenic
AGTTCAAGGAATCATCGAAG+GGG 0.721843 1_3:-52710383 Msa0124810:CDS
AGGACCAATTGTGAAGACAG+CGG 0.726189 1_3:+52710489 None:intergenic
CCATGGTCATCGAAGCAGCG+AGG 0.728643 1_3:+52710350 None:intergenic
GAAAGCGGCTTGGACTAAGG+CGG 0.747622 1_3:-52709918 Msa0124810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATTAATAAATGAAAGA+AGG + chr1_3:52709514-52709533 None:intergenic 10.0%
!!! AATAATACTTTAATATCTTT+TGG - chr1_3:52709566-52709585 Msa0124810:intron 10.0%
!! AATAATTAATAAATGAAAGA+AGG + chr1_3:52709514-52709533 None:intergenic 10.0%
!!! AATAATACTTTAATATCTTT+TGG - chr1_3:52709566-52709585 Msa0124810:intron 10.0%
!! ATGAATATTTCTCATATTTA+GGG - chr1_3:52709034-52709053 Msa0124810:CDS 15.0%
!! CATTATAAAACTAAATCATA+TGG - chr1_3:52709741-52709760 Msa0124810:intron 15.0%
!!! TGTTCTAAATTAATTTTGTT+AGG - chr1_3:52709797-52709816 Msa0124810:CDS 15.0%
!! TAATGTTAAAAAAATTGACA+AGG + chr1_3:52709997-52710016 None:intergenic 15.0%
!!! AATGTTTATTTTTTAAGTAC+TGG - chr1_3:52710076-52710095 Msa0124810:CDS 15.0%
!! ATGAATATTTCTCATATTTA+GGG - chr1_3:52709034-52709053 Msa0124810:CDS 15.0%
!! CATTATAAAACTAAATCATA+TGG - chr1_3:52709741-52709760 Msa0124810:intron 15.0%
!!! TGTTCTAAATTAATTTTGTT+AGG - chr1_3:52709797-52709816 Msa0124810:CDS 15.0%
!! TAATGTTAAAAAAATTGACA+AGG + chr1_3:52709997-52710016 None:intergenic 15.0%
!!! AATGTTTATTTTTTAAGTAC+TGG - chr1_3:52710076-52710095 Msa0124810:CDS 15.0%
!! CATGAATATTTCTCATATTT+AGG - chr1_3:52709033-52709052 Msa0124810:CDS 20.0%
!!! TTAATATGTTATATGGACTA+TGG - chr1_3:52709665-52709684 Msa0124810:intron 20.0%
!!! TATGGAATAGTCAAATTTTT+TGG - chr1_3:52709683-52709702 Msa0124810:intron 20.0%
!! TTAAAAAAATTGACAAGGTT+TGG + chr1_3:52709992-52710011 None:intergenic 20.0%
!! TTGAACCTAATATTAGTATT+TGG - chr1_3:52710442-52710461 Msa0124810:CDS 20.0%
!! TTAGTCCAAATACTAATATT+AGG + chr1_3:52710450-52710469 None:intergenic 20.0%
!! AATATTAGTATTTGGACTAA+TGG - chr1_3:52710450-52710469 Msa0124810:CDS 20.0%
!! CATGAATATTTCTCATATTT+AGG - chr1_3:52709033-52709052 Msa0124810:CDS 20.0%
!!! TTAATATGTTATATGGACTA+TGG - chr1_3:52709665-52709684 Msa0124810:intron 20.0%
!!! TATGGAATAGTCAAATTTTT+TGG - chr1_3:52709683-52709702 Msa0124810:intron 20.0%
!! TTAAAAAAATTGACAAGGTT+TGG + chr1_3:52709992-52710011 None:intergenic 20.0%
!! TTGAACCTAATATTAGTATT+TGG - chr1_3:52710442-52710461 Msa0124810:CDS 20.0%
!! TTAGTCCAAATACTAATATT+AGG + chr1_3:52710450-52710469 None:intergenic 20.0%
!! AATATTAGTATTTGGACTAA+TGG - chr1_3:52710450-52710469 Msa0124810:CDS 20.0%
!!! TCACTGTAGTTAAAGTTTTT+TGG - chr1_3:52709600-52709619 Msa0124810:intron 25.0%
! ACAAAATAATAGCAAGCAAA+GGG + chr1_3:52709848-52709867 None:intergenic 25.0%
!!! GCTATTATTTTGTGTACTTT+TGG - chr1_3:52709855-52709874 Msa0124810:CDS 25.0%
! AAAACAAAACGATTGACATA+TGG - chr1_3:52709919-52709938 Msa0124810:CDS 25.0%
! ATTGACATATGGTATGTAAA+TGG - chr1_3:52709930-52709949 Msa0124810:CDS 25.0%
! GAAGTAAAACATAACAAAGT+AGG - chr1_3:52710029-52710048 Msa0124810:CDS 25.0%
!!! TTAAGTACTGGTTGAAATTT+TGG - chr1_3:52710088-52710107 Msa0124810:CDS 25.0%
!!! TATGCATGCTATTTTATGAA+TGG - chr1_3:52710712-52710731 Msa0124810:five_prime_UTR 25.0%
!!! TCACTGTAGTTAAAGTTTTT+TGG - chr1_3:52709600-52709619 Msa0124810:intron 25.0%
! ACAAAATAATAGCAAGCAAA+GGG + chr1_3:52709848-52709867 None:intergenic 25.0%
!!! GCTATTATTTTGTGTACTTT+TGG - chr1_3:52709855-52709874 Msa0124810:CDS 25.0%
! AAAACAAAACGATTGACATA+TGG - chr1_3:52709919-52709938 Msa0124810:CDS 25.0%
! ATTGACATATGGTATGTAAA+TGG - chr1_3:52709930-52709949 Msa0124810:CDS 25.0%
! GAAGTAAAACATAACAAAGT+AGG - chr1_3:52710029-52710048 Msa0124810:CDS 25.0%
!!! TTAAGTACTGGTTGAAATTT+TGG - chr1_3:52710088-52710107 Msa0124810:CDS 25.0%
!!! TATGCATGCTATTTTATGAA+TGG - chr1_3:52710712-52710731 Msa0124810:five_prime_UTR 25.0%
! GTTTCAATTTTCTTGTCAAG+AGG - chr1_3:52708511-52708530 Msa0124810:three_prime_UTR 30.0%
ATCAAAATCAAACGATGTAC+AGG - chr1_3:52708548-52708567 Msa0124810:three_prime_UTR 30.0%
TCAAAATCAAACGATGTACA+GGG - chr1_3:52708549-52708568 Msa0124810:three_prime_UTR 30.0%
TCAAACTTGCAAAGAAATCA+TGG - chr1_3:52708623-52708642 Msa0124810:exon 30.0%
CAAACTTGCAAAGAAATCAT+GGG - chr1_3:52708624-52708643 Msa0124810:exon 30.0%
AAATCAGTTTAGCGTATTTG+AGG + chr1_3:52708795-52708814 None:intergenic 30.0%
TGTAAATCAATAACCCGAAT+TGG + chr1_3:52708978-52708997 None:intergenic 30.0%
TATGAGAAATATTCATGACC+AGG + chr1_3:52709030-52709049 None:intergenic 30.0%
AAGAAGGAGTTATATTTGCA+TGG + chr1_3:52709498-52709517 None:intergenic 30.0%
CACAAAATAATAGCAAGCAA+AGG + chr1_3:52709849-52709868 None:intergenic 30.0%
GGCAAATAGATTGAAGAATA+TGG - chr1_3:52709951-52709970 Msa0124810:CDS 30.0%
! AAAAATTGACAAGGTTTGGT+TGG + chr1_3:52709988-52710007 None:intergenic 30.0%
! GTTGAAATTTTGGATGGTTT+AGG - chr1_3:52710098-52710117 Msa0124810:CDS 30.0%
! AGGGATTACTTGATGATAAA+TGG - chr1_3:52710369-52710388 Msa0124810:CDS 30.0%
! GATTACTTGATGATAAATGG+TGG - chr1_3:52710372-52710391 Msa0124810:CDS 30.0%
ATTAGTATTTGGACTAATGG+AGG - chr1_3:52710453-52710472 Msa0124810:CDS 30.0%
! TCCTAATTAAGAGCTTTTGT+CGG + chr1_3:52710616-52710635 None:intergenic 30.0%
CACATGTATCACACAATAAA+AGG + chr1_3:52710670-52710689 None:intergenic 30.0%
! GTTTCAATTTTCTTGTCAAG+AGG - chr1_3:52708511-52708530 Msa0124810:three_prime_UTR 30.0%
ATCAAAATCAAACGATGTAC+AGG - chr1_3:52708548-52708567 Msa0124810:three_prime_UTR 30.0%
TCAAAATCAAACGATGTACA+GGG - chr1_3:52708549-52708568 Msa0124810:three_prime_UTR 30.0%
TCAAACTTGCAAAGAAATCA+TGG - chr1_3:52708623-52708642 Msa0124810:exon 30.0%
CAAACTTGCAAAGAAATCAT+GGG - chr1_3:52708624-52708643 Msa0124810:exon 30.0%
AAATCAGTTTAGCGTATTTG+AGG + chr1_3:52708795-52708814 None:intergenic 30.0%
TGTAAATCAATAACCCGAAT+TGG + chr1_3:52708978-52708997 None:intergenic 30.0%
TATGAGAAATATTCATGACC+AGG + chr1_3:52709030-52709049 None:intergenic 30.0%
AAGAAGGAGTTATATTTGCA+TGG + chr1_3:52709498-52709517 None:intergenic 30.0%
CACAAAATAATAGCAAGCAA+AGG + chr1_3:52709849-52709868 None:intergenic 30.0%
GGCAAATAGATTGAAGAATA+TGG - chr1_3:52709951-52709970 Msa0124810:CDS 30.0%
! AAAAATTGACAAGGTTTGGT+TGG + chr1_3:52709988-52710007 None:intergenic 30.0%
! GTTGAAATTTTGGATGGTTT+AGG - chr1_3:52710098-52710117 Msa0124810:CDS 30.0%
! AGGGATTACTTGATGATAAA+TGG - chr1_3:52710369-52710388 Msa0124810:CDS 30.0%
! GATTACTTGATGATAAATGG+TGG - chr1_3:52710372-52710391 Msa0124810:CDS 30.0%
ATTAGTATTTGGACTAATGG+AGG - chr1_3:52710453-52710472 Msa0124810:CDS 30.0%
! TCCTAATTAAGAGCTTTTGT+CGG + chr1_3:52710616-52710635 None:intergenic 30.0%
CACATGTATCACACAATAAA+AGG + chr1_3:52710670-52710689 None:intergenic 30.0%
! AAGAACGAAAGGCAGTTTTT+CGG + chr1_3:52708725-52708744 None:intergenic 35.0%
TGATTCGAGAGTTTATCATG+AGG + chr1_3:52708820-52708839 None:intergenic 35.0%
TAAACTCTCGAATCATGTCA+AGG - chr1_3:52708825-52708844 Msa0124810:CDS 35.0%
TAGTTCAAGGAATCATCGAA+GGG - chr1_3:52708851-52708870 Msa0124810:CDS 35.0%
CAACTCGAACTAAACCAATT+CGG - chr1_3:52708961-52708980 Msa0124810:CDS 35.0%
AACTCGAACTAAACCAATTC+GGG - chr1_3:52708962-52708981 Msa0124810:CDS 35.0%
CAATGCGAATGTTAAGCAAT+TGG - chr1_3:52708996-52709015 Msa0124810:CDS 35.0%
GAAAGTTATTGCTATGCAGA+GGG - chr1_3:52709188-52709207 Msa0124810:intron 35.0%
!! GGTTTTTGAGAATCAAAGAG+AGG - chr1_3:52709257-52709276 Msa0124810:intron 35.0%
! TAGTGTTGAGTATGAAACCA+AGG - chr1_3:52709467-52709486 Msa0124810:intron 35.0%
! ATATTTGCATGGACTAACCT+TGG + chr1_3:52709487-52709506 None:intergenic 35.0%
!!! GTACTGGTTGAAATTTTGGA+TGG - chr1_3:52710092-52710111 Msa0124810:CDS 35.0%
AGCAATTCTGTATGAGAAGA+AGG - chr1_3:52710167-52710186 Msa0124810:CDS 35.0%
GCTATACGCAAAGAAAAAAG+AGG - chr1_3:52710260-52710279 Msa0124810:CDS 35.0%
CAAAGAAAAAAGAGGCAGAA+GGG - chr1_3:52710268-52710287 Msa0124810:CDS 35.0%
AATACACTTCTCAATGCACT+TGG - chr1_3:52710327-52710346 Msa0124810:CDS 35.0%
! AAATGACTACACAGCTCTAA+GGG - chr1_3:52710350-52710369 Msa0124810:CDS 35.0%
! TTAAGAGCTTTTGTCGGATA+AGG + chr1_3:52710610-52710629 None:intergenic 35.0%
TCCGACAAAAGCTCTTAATT+AGG - chr1_3:52710612-52710631 Msa0124810:CDS 35.0%
GACAAAAGCTCTTAATTAGG+AGG - chr1_3:52710615-52710634 Msa0124810:CDS 35.0%
ATTAGGAGGATGCTTGTATT+AGG - chr1_3:52710629-52710648 Msa0124810:CDS 35.0%
! AAGAACGAAAGGCAGTTTTT+CGG + chr1_3:52708725-52708744 None:intergenic 35.0%
TGATTCGAGAGTTTATCATG+AGG + chr1_3:52708820-52708839 None:intergenic 35.0%
TAAACTCTCGAATCATGTCA+AGG - chr1_3:52708825-52708844 Msa0124810:CDS 35.0%
TAGTTCAAGGAATCATCGAA+GGG - chr1_3:52708851-52708870 Msa0124810:CDS 35.0%
CAACTCGAACTAAACCAATT+CGG - chr1_3:52708961-52708980 Msa0124810:CDS 35.0%
AACTCGAACTAAACCAATTC+GGG - chr1_3:52708962-52708981 Msa0124810:CDS 35.0%
CAATGCGAATGTTAAGCAAT+TGG - chr1_3:52708996-52709015 Msa0124810:CDS 35.0%
GAAAGTTATTGCTATGCAGA+GGG - chr1_3:52709188-52709207 Msa0124810:intron 35.0%
!! GGTTTTTGAGAATCAAAGAG+AGG - chr1_3:52709257-52709276 Msa0124810:intron 35.0%
! TAGTGTTGAGTATGAAACCA+AGG - chr1_3:52709467-52709486 Msa0124810:intron 35.0%
! ATATTTGCATGGACTAACCT+TGG + chr1_3:52709487-52709506 None:intergenic 35.0%
!!! GTACTGGTTGAAATTTTGGA+TGG - chr1_3:52710092-52710111 Msa0124810:CDS 35.0%
AGCAATTCTGTATGAGAAGA+AGG - chr1_3:52710167-52710186 Msa0124810:CDS 35.0%
GCTATACGCAAAGAAAAAAG+AGG - chr1_3:52710260-52710279 Msa0124810:CDS 35.0%
CAAAGAAAAAAGAGGCAGAA+GGG - chr1_3:52710268-52710287 Msa0124810:CDS 35.0%
AATACACTTCTCAATGCACT+TGG - chr1_3:52710327-52710346 Msa0124810:CDS 35.0%
! AAATGACTACACAGCTCTAA+GGG - chr1_3:52710350-52710369 Msa0124810:CDS 35.0%
! TTAAGAGCTTTTGTCGGATA+AGG + chr1_3:52710610-52710629 None:intergenic 35.0%
TCCGACAAAAGCTCTTAATT+AGG - chr1_3:52710612-52710631 Msa0124810:CDS 35.0%
GACAAAAGCTCTTAATTAGG+AGG - chr1_3:52710615-52710634 Msa0124810:CDS 35.0%
ATTAGGAGGATGCTTGTATT+AGG - chr1_3:52710629-52710648 Msa0124810:CDS 35.0%
! AAGAAATCATGGGTTTTCCC+TGG - chr1_3:52708634-52708653 Msa0124810:CDS 40.0%
! ACTTCGAAGGTATAGTTCAC+CGG + chr1_3:52708688-52708707 None:intergenic 40.0%
TCAGTTTAGCGTATTTGAGG+AGG + chr1_3:52708792-52708811 None:intergenic 40.0%
CATGTCAAGGAACTAGTTCA+AGG - chr1_3:52708838-52708857 Msa0124810:CDS 40.0%
CTAGTTCAAGGAATCATCGA+AGG - chr1_3:52708850-52708869 Msa0124810:CDS 40.0%
AGTTCAAGGAATCATCGAAG+GGG - chr1_3:52708852-52708871 Msa0124810:CDS 40.0%
TGCGAATGTTAAGCAATTGG+TGG - chr1_3:52708999-52709018 Msa0124810:CDS 40.0%
! TTTAGGGCAAAAGACGCAAA+TGG - chr1_3:52709050-52709069 Msa0124810:CDS 40.0%
GCTAAGATGAAAGGTGAAGT+TGG - chr1_3:52709108-52709127 Msa0124810:CDS 40.0%
!! TGAAGTTGGCTCGAAATCTA+GGG - chr1_3:52709122-52709141 Msa0124810:intron 40.0%
GAATGCAGCAAAAATTGACG+CGG - chr1_3:52709161-52709180 Msa0124810:intron 40.0%
CGAAAGTTATTGCTATGCAG+AGG - chr1_3:52709187-52709206 Msa0124810:intron 40.0%
! ACAAGGAGGGATTTAGAGTT+AGG - chr1_3:52709223-52709242 Msa0124810:intron 40.0%
TAGAGTTAGGACTGAAGTGA+AGG - chr1_3:52709236-52709255 Msa0124810:intron 40.0%
AATGTGCCAAGTCTAAATCG+TGG - chr1_3:52709820-52709839 Msa0124810:CDS 40.0%
AGCAAGTGCTATGTTTCGTT+TGG - chr1_3:52709894-52709913 Msa0124810:CDS 40.0%
TTGGATGGTTTAGGTACAAG+AGG - chr1_3:52710107-52710126 Msa0124810:CDS 40.0%
TTTAGGTACAAGAGGCTAAC+TGG - chr1_3:52710115-52710134 Msa0124810:CDS 40.0%
TTAGGTACAAGAGGCTAACT+GGG - chr1_3:52710116-52710135 Msa0124810:CDS 40.0%
GCAAAGAAAAAAGAGGCAGA+AGG - chr1_3:52710267-52710286 Msa0124810:CDS 40.0%
GAAATGACTACACAGCTCTA+AGG - chr1_3:52710349-52710368 Msa0124810:CDS 40.0%
! GGAATAACGGAAGGTTCTAT+GGG - chr1_3:52710489-52710508 Msa0124810:CDS 40.0%
TCATGGACAGTCTTAAACAG+AGG + chr1_3:52710552-52710571 None:intergenic 40.0%
! AAGAAATCATGGGTTTTCCC+TGG - chr1_3:52708634-52708653 Msa0124810:CDS 40.0%
! ACTTCGAAGGTATAGTTCAC+CGG + chr1_3:52708688-52708707 None:intergenic 40.0%
TCAGTTTAGCGTATTTGAGG+AGG + chr1_3:52708792-52708811 None:intergenic 40.0%
CATGTCAAGGAACTAGTTCA+AGG - chr1_3:52708838-52708857 Msa0124810:CDS 40.0%
CTAGTTCAAGGAATCATCGA+AGG - chr1_3:52708850-52708869 Msa0124810:CDS 40.0%
AGTTCAAGGAATCATCGAAG+GGG - chr1_3:52708852-52708871 Msa0124810:CDS 40.0%
TGCGAATGTTAAGCAATTGG+TGG - chr1_3:52708999-52709018 Msa0124810:CDS 40.0%
! TTTAGGGCAAAAGACGCAAA+TGG - chr1_3:52709050-52709069 Msa0124810:CDS 40.0%
GCTAAGATGAAAGGTGAAGT+TGG - chr1_3:52709108-52709127 Msa0124810:CDS 40.0%
!! TGAAGTTGGCTCGAAATCTA+GGG - chr1_3:52709122-52709141 Msa0124810:intron 40.0%
GAATGCAGCAAAAATTGACG+CGG - chr1_3:52709161-52709180 Msa0124810:intron 40.0%
CGAAAGTTATTGCTATGCAG+AGG - chr1_3:52709187-52709206 Msa0124810:intron 40.0%
! ACAAGGAGGGATTTAGAGTT+AGG - chr1_3:52709223-52709242 Msa0124810:intron 40.0%
TAGAGTTAGGACTGAAGTGA+AGG - chr1_3:52709236-52709255 Msa0124810:intron 40.0%
AATGTGCCAAGTCTAAATCG+TGG - chr1_3:52709820-52709839 Msa0124810:CDS 40.0%
AGCAAGTGCTATGTTTCGTT+TGG - chr1_3:52709894-52709913 Msa0124810:CDS 40.0%
TTGGATGGTTTAGGTACAAG+AGG - chr1_3:52710107-52710126 Msa0124810:CDS 40.0%
TTTAGGTACAAGAGGCTAAC+TGG - chr1_3:52710115-52710134 Msa0124810:CDS 40.0%
TTAGGTACAAGAGGCTAACT+GGG - chr1_3:52710116-52710135 Msa0124810:CDS 40.0%
GCAAAGAAAAAAGAGGCAGA+AGG - chr1_3:52710267-52710286 Msa0124810:CDS 40.0%
GAAATGACTACACAGCTCTA+AGG - chr1_3:52710349-52710368 Msa0124810:CDS 40.0%
! GGAATAACGGAAGGTTCTAT+GGG - chr1_3:52710489-52710508 Msa0124810:CDS 40.0%
TCATGGACAGTCTTAAACAG+AGG + chr1_3:52710552-52710571 None:intergenic 40.0%
ACTCATGGCTTGAACTTCGA+AGG + chr1_3:52708701-52708720 None:intergenic 45.0%
AGGACCAATTGTGAAGACAG+CGG + chr1_3:52708749-52708768 None:intergenic 45.0%
! ACCATGGAAGAGGTTTTCAG+AGG - chr1_3:52708901-52708920 Msa0124810:CDS 45.0%
! TCCTCTGAAAACCTCTTCCA+TGG + chr1_3:52708905-52708924 None:intergenic 45.0%
GTGGCAGAAGCTAAGATGAA+AGG - chr1_3:52709099-52709118 Msa0124810:CDS 45.0%
!! GTGAAGTTGGCTCGAAATCT+AGG - chr1_3:52709121-52709140 Msa0124810:intron 45.0%
GAATCAAAGAGAGGCTGAAG+TGG - chr1_3:52709266-52709285 Msa0124810:intron 45.0%
! TGAGTTGGCGAAGAAGAAAG+CGG - chr1_3:52709302-52709321 Msa0124810:intron 45.0%
!! TGCTAAAGCTGTGGCTCTAA+GGG - chr1_3:52709362-52709381 Msa0124810:intron 45.0%
AGGGATCCACGATTTAGACT+TGG + chr1_3:52709829-52709848 None:intergenic 45.0%
TCTGTATGAGAAGAAGGCAG+AGG - chr1_3:52710173-52710192 Msa0124810:CDS 45.0%
CAGAAGGGATTGTGACACTT+GGG - chr1_3:52710283-52710302 Msa0124810:CDS 45.0%
TGGTGGCATGTTTCAAGAGA+TGG - chr1_3:52710389-52710408 Msa0124810:CDS 45.0%
GATGGCTAAGATCAATGCTG+AGG - chr1_3:52710407-52710426 Msa0124810:CDS 45.0%
TGGACTAATGGAGGTGACAA+TGG - chr1_3:52710462-52710481 Msa0124810:CDS 45.0%
ACTAATGGAGGTGACAATGG+AGG - chr1_3:52710465-52710484 Msa0124810:CDS 45.0%
TGACAATGGAGGCGGAATAA+CGG - chr1_3:52710476-52710495 Msa0124810:CDS 45.0%
! CGGAATAACGGAAGGTTCTA+TGG - chr1_3:52710488-52710507 Msa0124810:CDS 45.0%
AGGTTCTATGGGCATGAAAG+AGG - chr1_3:52710500-52710519 Msa0124810:CDS 45.0%
TGGACAGTCTTAAACAGAGG+TGG + chr1_3:52710549-52710568 None:intergenic 45.0%
AAGACTGTCCATGAGCAAAC+AGG - chr1_3:52710558-52710577 Msa0124810:CDS 45.0%
ACTCATGGCTTGAACTTCGA+AGG + chr1_3:52708701-52708720 None:intergenic 45.0%
AGGACCAATTGTGAAGACAG+CGG + chr1_3:52708749-52708768 None:intergenic 45.0%
! ACCATGGAAGAGGTTTTCAG+AGG - chr1_3:52708901-52708920 Msa0124810:CDS 45.0%
! TCCTCTGAAAACCTCTTCCA+TGG + chr1_3:52708905-52708924 None:intergenic 45.0%
GTGGCAGAAGCTAAGATGAA+AGG - chr1_3:52709099-52709118 Msa0124810:CDS 45.0%
!! GTGAAGTTGGCTCGAAATCT+AGG - chr1_3:52709121-52709140 Msa0124810:intron 45.0%
GAATCAAAGAGAGGCTGAAG+TGG - chr1_3:52709266-52709285 Msa0124810:intron 45.0%
! TGAGTTGGCGAAGAAGAAAG+CGG - chr1_3:52709302-52709321 Msa0124810:intron 45.0%
!! TGCTAAAGCTGTGGCTCTAA+GGG - chr1_3:52709362-52709381 Msa0124810:intron 45.0%
AGGGATCCACGATTTAGACT+TGG + chr1_3:52709829-52709848 None:intergenic 45.0%
TCTGTATGAGAAGAAGGCAG+AGG - chr1_3:52710173-52710192 Msa0124810:CDS 45.0%
CAGAAGGGATTGTGACACTT+GGG - chr1_3:52710283-52710302 Msa0124810:CDS 45.0%
TGGTGGCATGTTTCAAGAGA+TGG - chr1_3:52710389-52710408 Msa0124810:CDS 45.0%
GATGGCTAAGATCAATGCTG+AGG - chr1_3:52710407-52710426 Msa0124810:CDS 45.0%
TGGACTAATGGAGGTGACAA+TGG - chr1_3:52710462-52710481 Msa0124810:CDS 45.0%
ACTAATGGAGGTGACAATGG+AGG - chr1_3:52710465-52710484 Msa0124810:CDS 45.0%
TGACAATGGAGGCGGAATAA+CGG - chr1_3:52710476-52710495 Msa0124810:CDS 45.0%
! CGGAATAACGGAAGGTTCTA+TGG - chr1_3:52710488-52710507 Msa0124810:CDS 45.0%
AGGTTCTATGGGCATGAAAG+AGG - chr1_3:52710500-52710519 Msa0124810:CDS 45.0%
TGGACAGTCTTAAACAGAGG+TGG + chr1_3:52710549-52710568 None:intergenic 45.0%
AAGACTGTCCATGAGCAAAC+AGG - chr1_3:52710558-52710577 Msa0124810:CDS 45.0%
!!! TTATTTTTTAATATGTTATA+TGG - chr1_3:52709658-52709677 Msa0124810:intron 5.0%
!!! TTATTTTTTAATATGTTATA+TGG - chr1_3:52709658-52709677 Msa0124810:intron 5.0%
!! AGCAAAAGCATCCGAGTACC+TGG - chr1_3:52708573-52708592 Msa0124810:three_prime_UTR 50.0%
TCCGAGTACCTGGTGATAAC+CGG - chr1_3:52708583-52708602 Msa0124810:three_prime_UTR 50.0%
TCCGGTTATCACCAGGTACT+CGG + chr1_3:52708587-52708606 None:intergenic 50.0%
GATGTCTTCGATTCCAGCTC+CGG + chr1_3:52708605-52708624 None:intergenic 50.0%
AGACGGTGCAAGATTGACCA+GGG + chr1_3:52708654-52708673 None:intergenic 50.0%
AAGACGGTGCAAGATTGACC+AGG + chr1_3:52708655-52708674 None:intergenic 50.0%
AGGTATAGTTCACCGGTGAG+AGG + chr1_3:52708681-52708700 None:intergenic 50.0%
!! AGGCAGTTTTTCGGCACTCA+TGG + chr1_3:52708716-52708735 None:intergenic 50.0%
AAGACAGCGGGAAGAACGAA+AGG + chr1_3:52708736-52708755 None:intergenic 50.0%
CTTCCCGCTGTCTTCACAAT+TGG - chr1_3:52708742-52708761 Msa0124810:CDS 50.0%
GGACCAATTGTGAAGACAGC+GGG + chr1_3:52708748-52708767 None:intergenic 50.0%
CTTTCCTGATCGTCAACACG+AGG + chr1_3:52708769-52708788 None:intergenic 50.0%
TGCTTCGATGACCATGGAAG+AGG - chr1_3:52708891-52708910 Msa0124810:CDS 50.0%
! AAGCAATTGGTGGATGTGCC+TGG - chr1_3:52709009-52709028 Msa0124810:CDS 50.0%
TGGAAGCAGCGAATCAAGCT+AGG - chr1_3:52709070-52709089 Msa0124810:CDS 50.0%
GGAAGCAGCGAATCAAGCTA+GGG - chr1_3:52709071-52709090 Msa0124810:CDS 50.0%
GAATCAAGCTAGGGTTGACG+TGG - chr1_3:52709080-52709099 Msa0124810:CDS 50.0%
!! GTTGGCTCGAAATCTAGGGA+AGG - chr1_3:52709126-52709145 Msa0124810:intron 50.0%
GTTATTGCTATGCAGAGGGC+TGG - chr1_3:52709192-52709211 Msa0124810:intron 50.0%
GGCTGAGGCTAATTCTGAGT+TGG - chr1_3:52709287-52709306 Msa0124810:intron 50.0%
! GAAGAAAGCGGCTTGGACTA+AGG - chr1_3:52709314-52709333 Msa0124810:intron 50.0%
! CTGCTAAAGCTGTGGCTCTA+AGG - chr1_3:52709361-52709380 Msa0124810:intron 50.0%
CTCAACCTCACCTTGCAACT+CGG + chr1_3:52709391-52709410 None:intergenic 50.0%
AGTTGCAAGGTGAGGTTGAG+AGG - chr1_3:52709391-52709410 Msa0124810:intron 50.0%
GCAGAAGGGATTGTGACACT+TGG - chr1_3:52710282-52710301 Msa0124810:CDS 50.0%
GTGACACTTGGGAATGCTCA+AGG - chr1_3:52710294-52710313 Msa0124810:CDS 50.0%
ATCAATGCTGAGGCAGTACG+TGG - chr1_3:52710417-52710436 Msa0124810:CDS 50.0%
AATGGAGGTGACAATGGAGG+CGG - chr1_3:52710468-52710487 Msa0124810:CDS 50.0%
! AATGGAGGCGGAATAACGGA+AGG - chr1_3:52710480-52710499 Msa0124810:CDS 50.0%
ATGGGCATGAAAGAGGTTGC+TGG - chr1_3:52710507-52710526 Msa0124810:CDS 50.0%
GCAACATGCCTGTTTGCTCA+TGG + chr1_3:52710569-52710588 None:intergenic 50.0%
ATGTTGCCTCCTGCTTGGAT+GGG - chr1_3:52710582-52710601 Msa0124810:CDS 50.0%
GATAAGGTTCCCATCCAAGC+AGG + chr1_3:52710594-52710613 None:intergenic 50.0%
!! AGCAAAAGCATCCGAGTACC+TGG - chr1_3:52708573-52708592 Msa0124810:three_prime_UTR 50.0%
TCCGAGTACCTGGTGATAAC+CGG - chr1_3:52708583-52708602 Msa0124810:three_prime_UTR 50.0%
TCCGGTTATCACCAGGTACT+CGG + chr1_3:52708587-52708606 None:intergenic 50.0%
GATGTCTTCGATTCCAGCTC+CGG + chr1_3:52708605-52708624 None:intergenic 50.0%
AGACGGTGCAAGATTGACCA+GGG + chr1_3:52708654-52708673 None:intergenic 50.0%
AAGACGGTGCAAGATTGACC+AGG + chr1_3:52708655-52708674 None:intergenic 50.0%
AGGTATAGTTCACCGGTGAG+AGG + chr1_3:52708681-52708700 None:intergenic 50.0%
!! AGGCAGTTTTTCGGCACTCA+TGG + chr1_3:52708716-52708735 None:intergenic 50.0%
AAGACAGCGGGAAGAACGAA+AGG + chr1_3:52708736-52708755 None:intergenic 50.0%
CTTCCCGCTGTCTTCACAAT+TGG - chr1_3:52708742-52708761 Msa0124810:CDS 50.0%
GGACCAATTGTGAAGACAGC+GGG + chr1_3:52708748-52708767 None:intergenic 50.0%
CTTTCCTGATCGTCAACACG+AGG + chr1_3:52708769-52708788 None:intergenic 50.0%
TGCTTCGATGACCATGGAAG+AGG - chr1_3:52708891-52708910 Msa0124810:CDS 50.0%
! AAGCAATTGGTGGATGTGCC+TGG - chr1_3:52709009-52709028 Msa0124810:CDS 50.0%
TGGAAGCAGCGAATCAAGCT+AGG - chr1_3:52709070-52709089 Msa0124810:CDS 50.0%
GGAAGCAGCGAATCAAGCTA+GGG - chr1_3:52709071-52709090 Msa0124810:CDS 50.0%
GAATCAAGCTAGGGTTGACG+TGG - chr1_3:52709080-52709099 Msa0124810:CDS 50.0%
!! GTTGGCTCGAAATCTAGGGA+AGG - chr1_3:52709126-52709145 Msa0124810:intron 50.0%
GTTATTGCTATGCAGAGGGC+TGG - chr1_3:52709192-52709211 Msa0124810:intron 50.0%
GGCTGAGGCTAATTCTGAGT+TGG - chr1_3:52709287-52709306 Msa0124810:intron 50.0%
! GAAGAAAGCGGCTTGGACTA+AGG - chr1_3:52709314-52709333 Msa0124810:intron 50.0%
! CTGCTAAAGCTGTGGCTCTA+AGG - chr1_3:52709361-52709380 Msa0124810:intron 50.0%
CTCAACCTCACCTTGCAACT+CGG + chr1_3:52709391-52709410 None:intergenic 50.0%
AGTTGCAAGGTGAGGTTGAG+AGG - chr1_3:52709391-52709410 Msa0124810:intron 50.0%
GCAGAAGGGATTGTGACACT+TGG - chr1_3:52710282-52710301 Msa0124810:CDS 50.0%
GTGACACTTGGGAATGCTCA+AGG - chr1_3:52710294-52710313 Msa0124810:CDS 50.0%
ATCAATGCTGAGGCAGTACG+TGG - chr1_3:52710417-52710436 Msa0124810:CDS 50.0%
AATGGAGGTGACAATGGAGG+CGG - chr1_3:52710468-52710487 Msa0124810:CDS 50.0%
! AATGGAGGCGGAATAACGGA+AGG - chr1_3:52710480-52710499 Msa0124810:CDS 50.0%
ATGGGCATGAAAGAGGTTGC+TGG - chr1_3:52710507-52710526 Msa0124810:CDS 50.0%
GCAACATGCCTGTTTGCTCA+TGG + chr1_3:52710569-52710588 None:intergenic 50.0%
ATGTTGCCTCCTGCTTGGAT+GGG - chr1_3:52710582-52710601 Msa0124810:CDS 50.0%
GATAAGGTTCCCATCCAAGC+AGG + chr1_3:52710594-52710613 None:intergenic 50.0%
TACCTGGTGATAACCGGAGC+TGG - chr1_3:52708589-52708608 Msa0124810:three_prime_UTR 55.0%
TTCCAGCTCCGGTTATCACC+AGG + chr1_3:52708594-52708613 None:intergenic 55.0%
! TGGTCCTCGTGTTGACGATC+AGG - chr1_3:52708762-52708781 Msa0124810:CDS 55.0%
GCTGGAGAGAGTGACAAGGA+GGG - chr1_3:52709210-52709229 Msa0124810:intron 55.0%
AAGAGAGGCTGAAGTGGCTG+AGG - chr1_3:52709272-52709291 Msa0124810:intron 55.0%
TGGCGAAGAAGAAAGCGGCT+TGG - chr1_3:52709307-52709326 Msa0124810:intron 55.0%
! GAAAGCGGCTTGGACTAAGG+CGG - chr1_3:52709317-52709336 Msa0124810:intron 55.0%
TTGGACTAAGGCGGCTCAAG+TGG - chr1_3:52709326-52709345 Msa0124810:intron 55.0%
AGTCGAGGCTGCTAAAGCTG+TGG - chr1_3:52709353-52709372 Msa0124810:intron 55.0%
CTAAGGGAAGCCGAGTTGCA+AGG - chr1_3:52709378-52709397 Msa0124810:intron 55.0%
CATGTTGCCTCCTGCTTGGA+TGG - chr1_3:52710581-52710600 Msa0124810:CDS 55.0%
AAGGTTCCCATCCAAGCAGG+AGG + chr1_3:52710591-52710610 None:intergenic 55.0%
TACCTGGTGATAACCGGAGC+TGG - chr1_3:52708589-52708608 Msa0124810:three_prime_UTR 55.0%
TTCCAGCTCCGGTTATCACC+AGG + chr1_3:52708594-52708613 None:intergenic 55.0%
! TGGTCCTCGTGTTGACGATC+AGG - chr1_3:52708762-52708781 Msa0124810:CDS 55.0%
GCTGGAGAGAGTGACAAGGA+GGG - chr1_3:52709210-52709229 Msa0124810:intron 55.0%
AAGAGAGGCTGAAGTGGCTG+AGG - chr1_3:52709272-52709291 Msa0124810:intron 55.0%
TGGCGAAGAAGAAAGCGGCT+TGG - chr1_3:52709307-52709326 Msa0124810:intron 55.0%
! GAAAGCGGCTTGGACTAAGG+CGG - chr1_3:52709317-52709336 Msa0124810:intron 55.0%
TTGGACTAAGGCGGCTCAAG+TGG - chr1_3:52709326-52709345 Msa0124810:intron 55.0%
AGTCGAGGCTGCTAAAGCTG+TGG - chr1_3:52709353-52709372 Msa0124810:intron 55.0%
CTAAGGGAAGCCGAGTTGCA+AGG - chr1_3:52709378-52709397 Msa0124810:intron 55.0%
CATGTTGCCTCCTGCTTGGA+TGG - chr1_3:52710581-52710600 Msa0124810:CDS 55.0%
AAGGTTCCCATCCAAGCAGG+AGG + chr1_3:52710591-52710610 None:intergenic 55.0%
CACCGTCTTCGACCTCTCAC+CGG - chr1_3:52708666-52708685 Msa0124810:CDS 60.0%
CACCGGTGAGAGGTCGAAGA+CGG + chr1_3:52708671-52708690 None:intergenic 60.0%
CCATGGTCATCGAAGCAGCG+AGG + chr1_3:52708888-52708907 None:intergenic 60.0%
CCTCGCTGCTTCGATGACCA+TGG - chr1_3:52708885-52708904 Msa0124810:CDS 60.0%
GAGGGCTGGAGAGAGTGACA+AGG - chr1_3:52709206-52709225 Msa0124810:intron 60.0%
GGCTGGAGAGAGTGACAAGG+AGG - chr1_3:52709209-52709228 Msa0124810:intron 60.0%
GGCTCAAGTGGCTGAAGTCG+AGG - chr1_3:52709338-52709357 Msa0124810:intron 60.0%
GGAAGCCGAGTTGCAAGGTG+AGG - chr1_3:52709383-52709402 Msa0124810:intron 60.0%
CAGGCATGTTGCCTCCTGCT+TGG - chr1_3:52710577-52710596 Msa0124810:CDS 60.0%
CACCGTCTTCGACCTCTCAC+CGG - chr1_3:52708666-52708685 Msa0124810:CDS 60.0%
CACCGGTGAGAGGTCGAAGA+CGG + chr1_3:52708671-52708690 None:intergenic 60.0%
CCATGGTCATCGAAGCAGCG+AGG + chr1_3:52708888-52708907 None:intergenic 60.0%
CCTCGCTGCTTCGATGACCA+TGG - chr1_3:52708885-52708904 Msa0124810:CDS 60.0%
GAGGGCTGGAGAGAGTGACA+AGG - chr1_3:52709206-52709225 Msa0124810:intron 60.0%
GGCTGGAGAGAGTGACAAGG+AGG - chr1_3:52709209-52709228 Msa0124810:intron 60.0%
GGCTCAAGTGGCTGAAGTCG+AGG - chr1_3:52709338-52709357 Msa0124810:intron 60.0%
GGAAGCCGAGTTGCAAGGTG+AGG - chr1_3:52709383-52709402 Msa0124810:intron 60.0%
CAGGCATGTTGCCTCCTGCT+TGG - chr1_3:52710577-52710596 Msa0124810:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 52708507 52710750 52708507 ID=Msa0124810;Name=Msa0124810
chr1_3 mRNA 52708507 52710750 52708507 ID=Msa0124810-mRNA-1;Parent=Msa0124810;Name=Msa0124810-mRNA-1;_AED=0.01;_eAED=0.01;_QI=55|1|1|1|1|1|2|121|478
chr1_3 exon 52708507 52709137 52708507 ID=Msa0124810-mRNA-1:exon:16226;Parent=Msa0124810-mRNA-1
chr1_3 exon 52709769 52710750 52709769 ID=Msa0124810-mRNA-1:exon:16225;Parent=Msa0124810-mRNA-1
chr1_3 five_prime_UTR 52710696 52710750 52710696 ID=Msa0124810-mRNA-1:five_prime_utr;Parent=Msa0124810-mRNA-1
chr1_3 CDS 52709769 52710695 52709769 ID=Msa0124810-mRNA-1:cds;Parent=Msa0124810-mRNA-1
chr1_3 CDS 52708628 52709137 52708628 ID=Msa0124810-mRNA-1:cds;Parent=Msa0124810-mRNA-1
chr1_3 three_prime_UTR 52708507 52708627 52708507 ID=Msa0124810-mRNA-1:three_prime_utr;Parent=Msa0124810-mRNA-1
Gene Sequence

>Msa0124810

ATGTACAGGGTAGCAAAAGCATCCGAGTACCTGGTGATAACCGGAGCTGGAATCGAAGACATCAAACTTGCAAAGAAATCATGGGTTTTCCCTGGTCAATCTTGCACCGTCTTCGACCTCTCACCGGTGAACTATACCTTCGAAGTTCAAGCCATGAGTGCCGAAAAACTGCCTTTCGTTCTTCCCGCTGTCTTCACAATTGGTCCTCGTGTTGACGATCAGGAAAGCCTCCTCAAATACGCTAAACTGATTTCACCTCATGATAAACTCTCGAATCATGTCAAGGAACTAGTTCAAGGAATCATCGAAGGGGAGACACGTGTCCTCGCTGCTTCGATGACCATGGAAGAGGTTTTCAGAGGAACAAAAGAGTTTAAACAAGAAGTATTCGAGAAAGTTCAACTCGAACTAAACCAATTCGGGTTATTGATTTACAATGCGAATGTTAAGCAATTGGTGGATGTGCCTGGTCATGAATATTTCTCATATTTAGGGCAAAAGACGCAAATGGAAGCAGCGAATCAAGCTAGGGTTGACGTGGCAGAAGCTAAGATGAAAGGTGAAGTTGGCTCGAAATCTAGGGAAGGACAAACACTGCAGAATGCAGCAAAAATTGACGCGGAGACGAAAGTTATTGCTATGCAGAGGGCTGGAGAGAGTGACAAGGAGGGATTTAGAGTTAGGACTGAAGTGAAGGTTTTTGAGAATCAAAGAGAGGCTGAAGTGGCTGAGGCTAATTCTGAGTTGGCGAAGAAGAAAGCGGCTTGGACTAAGGCGGCTCAAGTGGCTGAAGTCGAGGCTGCTAAAGCTGTGGCTCTAAGGGAAGCCGAGTTGCAAGGTGAGGTTGAGAGGATGAATGCTTTGACTACTACTGAGAAGCTTAAAGCTGATTTACTTAGCAAAGCTAGTGTTGAGTATGAAACCAAGGTACAAGAGGCTAACTGGGAATTATACAAGAAACAAAAAGAAGCAGAAGCAATTCTGTATGAGAAGAAGGCAGAGGCAGAAGCACAGAAAGCATTGTCAGATGCAACATTTTATGCGCGCAAGCAAGCAGCTGAAGCAGAGCTATACGCAAAGAAAAAAGAGGCAGAAGGGATTGTGACACTTGGGAATGCTCAAGGAGTGTATGTAAATACACTTCTCAATGCACTTGGAAATGACTACACAGCTCTAAGGGATTACTTGATGATAAATGGTGGCATGTTTCAAGAGATGGCTAAGATCAATGCTGAGGCAGTACGTGGACTTGAACCTAATATTAGTATTTGGACTAATGGAGGTGACAATGGAGGCGGAATAACGGAAGGTTCTATGGGCATGAAAGAGGTTGCTGGTGTTTACAAGATGCTGCCACCTCTGTTTAAGACTGTCCATGAGCAAACAGGCATGTTGCCTCCTGCTTGGATGGGAACCTTATCCGACAAAAGCTCTTAA
Protein sequence

>Msa0124810

MYRVAKASEYLVITGAGIEDIKLAKKSWVFPGQSCTVFDLSPVNYTFEVQAMSAEKLPFVLPAVFTIGPRVDDQESLLKYAKLISPHDKLSNHVKELVQGIIEGETRVLAASMTMEEVFRGTKEFKQEVFEKVQLELNQFGLLIYNANVKQLVDVPGHEYFSYLGQKTQMEAANQARVDVAEAKMKGEVGSKSREGQTLQNAAKIDAETKVIAMQRAGESDKEGFRVRTEVKVFENQREAEVAEANSELAKKKAAWTKAAQVAEVEAAKAVALREAELQGEVERMNALTTTEKLKADLLSKASVEYETKVQEANWELYKKQKEAEAILYEKKAEAEAQKALSDATFYARKQAAEAELYAKKKEAEGIVTLGNAQGVYVNTLLNALGNDYTALRDYLMINGGMFQEMAKINAEAVRGLEPNISIWTNGGDNGGGITEGSMGMKEVAGVYKMLPPLFKTVHEQTGMLPPAWMGTLSDKSS*