Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029460 | sp|D2XNQ8|FLOT1_MEDTR | 91.632 | 478 | 40 | 0 | 1 | 478 | 1 | 478 | 0.0 | 904 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029460 | Msa0124740 | 0.902809 | 6.626962e-79 | -8.615850e-47 |
| Msa0029460 | Msa0124810 | 0.901384 | 2.829907e-78 | -8.615850e-47 |
| Msa0029460 | Msa0169500 | 0.844031 | 9.721734e-59 | -8.615850e-47 |
| Msa0029460 | Msa0178290 | 0.822869 | 1.879964e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029460 | MtrunA17_Chr1g0186201 | 96.862 | 478 | 11 | 1 | 1 | 478 | 1 | 474 | 0.0 | 940 |
| Msa0029460 | MtrunA17_Chr3g0137321 | 91.632 | 478 | 40 | 0 | 1 | 478 | 1 | 478 | 0.0 | 904 |
| Msa0029460 | MtrunA17_Chr3g0137261 | 91.004 | 478 | 43 | 0 | 1 | 478 | 3 | 480 | 0.0 | 871 |
| Msa0029460 | MtrunA17_Chr3g0137341 | 91.632 | 478 | 36 | 2 | 1 | 478 | 1 | 474 | 0.0 | 870 |
| Msa0029460 | MtrunA17_Chr1g0192071 | 88.285 | 478 | 48 | 1 | 1 | 478 | 3 | 472 | 0.0 | 833 |
| Msa0029460 | MtrunA17_Chr3g0137271 | 90.985 | 477 | 39 | 2 | 1 | 477 | 1 | 473 | 0.0 | 832 |
| Msa0029460 | MtrunA17_Chr1g0212211 | 78.947 | 532 | 55 | 6 | 1 | 478 | 1 | 529 | 0.0 | 793 |
| Msa0029460 | MtrunA17_Chr8g0364981 | 83.092 | 414 | 44 | 4 | 52 | 464 | 1 | 389 | 0.0 | 620 |
| Msa0029460 | MtrunA17_Chr1g0184991 | 97.976 | 247 | 5 | 0 | 1 | 247 | 1 | 247 | 1.53e-180 | 505 |
| Msa0029460 | MtrunA17_Chr1g0184981 | 95.361 | 194 | 6 | 1 | 285 | 478 | 1 | 191 | 1.35e-130 | 376 |
| Msa0029460 | MtrunA17_Chr3g0137301 | 88.601 | 193 | 22 | 0 | 285 | 477 | 1 | 193 | 6.42e-121 | 351 |
| Msa0029460 | MtrunA17_Chr3g0137311 | 86.667 | 135 | 18 | 0 | 1 | 135 | 19 | 153 | 1.11e-81 | 249 |
| Msa0029460 | MtrunA17_Chr3g0110461 | 83.333 | 42 | 7 | 0 | 113 | 154 | 1 | 42 | 2.07e-16 | 73.2 |
| Msa0029460 | MtrunA17_Chr8g0364991 | 69.231 | 39 | 12 | 0 | 1 | 39 | 1 | 39 | 5.41e-13 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029460 | AT5G25260.1 | 74.684 | 474 | 108 | 2 | 1 | 474 | 1 | 462 | 0.0 | 734 |
| Msa0029460 | AT5G25250.1 | 74.630 | 473 | 106 | 2 | 1 | 473 | 1 | 459 | 0.0 | 723 |
| Msa0029460 | AT5G64870.1 | 71.186 | 472 | 125 | 1 | 2 | 473 | 3 | 463 | 0.0 | 659 |
Find 120 sgRNAs with CRISPR-Local
Find 288 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAATATTTCTCATATTT+AGG | 0.103686 | 1_1:+54793457 | Msa0029460:CDS |
| TTGAACCTAAGATTAGTATT+TGG | 0.251111 | 1_1:+54794575 | Msa0029460:CDS |
| CGGAATAACGGAAGGTTCTA+TGG | 0.257659 | 1_1:+54794621 | Msa0029460:CDS |
| CTGCTAAAGCTGTGGCTCTA+AGG | 0.272737 | 1_1:+54793785 | Msa0029460:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.295084 | 1_1:+54794502 | Msa0029460:CDS |
| TGCTAAATTACCAAAATAAA+AGG | 0.295797 | 1_1:-54794800 | None:intergenic |
| ATGAATATTTCTCATATTTA+GGG | 0.305111 | 1_1:+54793458 | Msa0029460:CDS |
| TCCGACAAAAGCTCTTAATT+AGG | 0.314591 | 1_1:+54794745 | Msa0029460:exon |
| GTGAAGTTGGCTCGAAATCT+AGG | 0.314615 | 1_1:+54793545 | Msa0029460:CDS |
| TTTAGGTACAAGAGGCTAAC+TGG | 0.315931 | 1_1:+54794248 | Msa0029460:intron |
| TTAGTCCAAATACTAATCTT+AGG | 0.318195 | 1_1:-54794580 | None:intergenic |
| CTTCCCGCTGTCTTCACAAT+TGG | 0.324959 | 1_1:+54793166 | Msa0029460:CDS |
| TCTAAGGGAAGCTGAGTTGC+AGG | 0.329397 | 1_1:+54793801 | Msa0029460:CDS |
| ATTAGGAGGATGCAAGTATT+AGG | 0.329639 | 1_1:+54794762 | Msa0029460:exon |
| ACAAGGAGGGATTTAGAGTT+AGG | 0.330276 | 1_1:+54793647 | Msa0029460:CDS |
| CATGTTGCCTCCTGCTTGGA+TGG | 0.342126 | 1_1:+54794714 | Msa0029460:CDS |
| TGTAAATCAATAACCCGAAT+TGG | 0.349196 | 1_1:-54793399 | None:intergenic |
| GAAACGACTACACAGCTCTA+AGG | 0.361629 | 1_1:+54794482 | Msa0029460:CDS |
| AAGATTAGTATTTGGACTAA+TGG | 0.361897 | 1_1:+54794583 | Msa0029460:CDS |
| CAATGCGAATGTTAAGCAAT+TGG | 0.388576 | 1_1:+54793420 | Msa0029460:CDS |
| CAACTCGAACTAAACCAATT+CGG | 0.390858 | 1_1:+54793385 | Msa0029460:CDS |
| ATCAAAATCAAACGATGTAC+AGG | 0.393868 | 1_1:+54792972 | Msa0029460:exon |
| TGGTCCTCGTGTTGACGATC+AGG | 0.407219 | 1_1:+54793186 | Msa0029460:CDS |
| TCAAACTTGCAAAGAAATCA+TGG | 0.416941 | 1_1:+54793047 | Msa0029460:CDS |
| AACTCGAACTAAACCAATTC+GGG | 0.427281 | 1_1:+54793386 | Msa0029460:CDS |
| TCCGAGTACCTGGTGATAAC+CGG | 0.437519 | 1_1:+54793007 | Msa0029460:CDS |
| GATGTCTTCGATTCCAGCTC+CGG | 0.437947 | 1_1:-54793026 | None:intergenic |
| AGCAATTCTGTATGAGAAGA+AGG | 0.462456 | 1_1:+54794300 | Msa0029460:CDS |
| AAATCAGTTTAGCGTATTTG+AGG | 0.472961 | 1_1:-54793216 | None:intergenic |
| GAAGAAAGCGGCGTGGACTA+AGG | 0.476838 | 1_1:+54793738 | Msa0029460:CDS |
| TTTAGGGCAAAAGACGCAAA+TGG | 0.491891 | 1_1:+54793474 | Msa0029460:CDS |
| AAGACTGTCCATGAGCAAAC+AGG | 0.492575 | 1_1:+54794691 | Msa0029460:CDS |
| TGGAAGCAGCGAATCAAGCT+AGG | 0.499263 | 1_1:+54793494 | Msa0029460:CDS |
| TGCTAAAGCTGTGGCTCTAA+GGG | 0.501192 | 1_1:+54793786 | Msa0029460:CDS |
| CAGGCATGTTGCCTCCTGCT+TGG | 0.503335 | 1_1:+54794710 | Msa0029460:CDS |
| TGCTTCGATGACCATGGAAG+AGG | 0.508530 | 1_1:+54793315 | Msa0029460:CDS |
| AGCAAAAGCATCCGAGTACC+TGG | 0.509436 | 1_1:+54792997 | Msa0029460:CDS |
| GTGGACTAAGGCGGCTCAAG+TGG | 0.516297 | 1_1:+54793750 | Msa0029460:CDS |
| TAGAGTTAGGACTGAAGTGA+AGG | 0.517399 | 1_1:+54793660 | Msa0029460:CDS |
| GCTAAGATGAAAGGTGAAGT+TGG | 0.517494 | 1_1:+54793532 | Msa0029460:CDS |
| CATGTCAAGGAACTAGTTCA+AGG | 0.517510 | 1_1:+54793262 | Msa0029460:CDS |
| GCAACATGCCTGTTTGCTCA+TGG | 0.521020 | 1_1:-54794699 | None:intergenic |
| ATGTTGCCTCCTGCTTGGAT+GGG | 0.522936 | 1_1:+54794715 | Msa0029460:CDS |
| GTTATTGCTATGCAGAGGGC+TGG | 0.525373 | 1_1:+54793616 | Msa0029460:CDS |
| TACCTGGTGATAACCGGAGC+TGG | 0.525647 | 1_1:+54793013 | Msa0029460:CDS |
| ATGGGCATGAAAGAGGTTGC+TGG | 0.526365 | 1_1:+54794640 | Msa0029460:CDS |
| AAGCAATTGGTGGATGTGCC+TGG | 0.526695 | 1_1:+54793433 | Msa0029460:CDS |
| TCCTCTGAAAACCTCTTCCA+TGG | 0.530446 | 1_1:-54793326 | None:intergenic |
| CGAAAGTTATTGCTATGCAG+AGG | 0.532272 | 1_1:+54793611 | Msa0029460:CDS |
| GGCTCAAGTGGCTGAAGTCG+AGG | 0.533715 | 1_1:+54793762 | Msa0029460:CDS |
| ATTAGTATTTGGACTAATGG+AGG | 0.534214 | 1_1:+54794586 | Msa0029460:CDS |
| GCAAAAGGGATTGTGACACT+TGG | 0.534836 | 1_1:+54794415 | Msa0029460:CDS |
| TTCCAGCTCCGGTTATCACC+AGG | 0.538435 | 1_1:-54793015 | None:intergenic |
| TGGTGGCATGTTTCAAGAGA+TGG | 0.539247 | 1_1:+54794522 | Msa0029460:CDS |
| GACAAAAGCTCTTAATTAGG+AGG | 0.540934 | 1_1:+54794748 | Msa0029460:exon |
| TCCGGTTATCACCAGGTACT+CGG | 0.542656 | 1_1:-54793008 | None:intergenic |
| TGACAATGGAGGCGGAATAA+CGG | 0.546090 | 1_1:+54794609 | Msa0029460:CDS |
| CACCGTCTTCGACCTCTCAC+CGG | 0.548854 | 1_1:+54793090 | Msa0029460:CDS |
| GATAAGGTTCCCATCCAAGC+AGG | 0.550974 | 1_1:-54794724 | None:intergenic |
| GGAAGCTGAGTTGCAGGGTG+AGG | 0.555691 | 1_1:+54793807 | Msa0029460:CDS |
| AATACACTTCTCAATGCACT+TGG | 0.557121 | 1_1:+54794460 | Msa0029460:CDS |
| GGCTGAGGCTAATTCAGAGT+TGG | 0.558654 | 1_1:+54793711 | Msa0029460:CDS |
| AAGAGAGGCTGAAGTGGCTG+AGG | 0.558698 | 1_1:+54793696 | Msa0029460:CDS |
| TTGGATGGTTTAGGTACAAG+AGG | 0.561865 | 1_1:+54794240 | Msa0029460:intron |
| CAAACTTGCAAAGAAATCAT+GGG | 0.562132 | 1_1:+54793048 | Msa0029460:CDS |
| AGGTTCTATGGGCATGAAAG+AGG | 0.562875 | 1_1:+54794633 | Msa0029460:CDS |
| TGCGAATGTTAAGCAATTGG+TGG | 0.563120 | 1_1:+54793423 | Msa0029460:CDS |
| GGACCAATTGTGAAGACAGC+GGG | 0.564372 | 1_1:-54793169 | None:intergenic |
| GGAATAACGGAAGGTTCTAT+GGG | 0.567693 | 1_1:+54794622 | Msa0029460:CDS |
| CCTCGCTGCTTCGATGACCA+TGG | 0.570615 | 1_1:+54793309 | Msa0029460:CDS |
| ACTTCGAAGGTATAGTTCAC+CGG | 0.571447 | 1_1:-54793109 | None:intergenic |
| AAGACGGTGCAAGATTGACC+AGG | 0.574032 | 1_1:-54793076 | None:intergenic |
| AGGTATAGTTCACCGGTGAG+AGG | 0.574045 | 1_1:-54793102 | None:intergenic |
| TTAGGTACAAGAGGCTAACT+GGG | 0.579786 | 1_1:+54794249 | Msa0029460:intron |
| TGAAGTTGGCTCGAAATCTA+GGG | 0.579862 | 1_1:+54793546 | Msa0029460:CDS |
| GTGACACTTGGGAATGCTCA+AGG | 0.583871 | 1_1:+54794427 | Msa0029460:CDS |
| TCAGTTTAGCGTATTTGAGG+AGG | 0.587438 | 1_1:-54793213 | None:intergenic |
| AGTTGCAGGGTGAGGTTGAG+AGG | 0.589803 | 1_1:+54793815 | Msa0029460:CDS |
| GAATCAAAGAGAGGCTGAAG+TGG | 0.589954 | 1_1:+54793690 | Msa0029460:CDS |
| AAACGACTACACAGCTCTAA+GGG | 0.592700 | 1_1:+54794483 | Msa0029460:CDS |
| CAAAAGGGATTGTGACACTT+GGG | 0.596519 | 1_1:+54794416 | Msa0029460:CDS |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 1_1:+54794306 | Msa0029460:CDS |
| ACTCATGGCTTGAACTTCGA+AGG | 0.601319 | 1_1:-54793122 | None:intergenic |
| AATGGAGGTGACAATGGAGG+CGG | 0.607583 | 1_1:+54794601 | Msa0029460:CDS |
| TGGACTAATGGAGGTGACAA+TGG | 0.609237 | 1_1:+54794595 | Msa0029460:CDS |
| GCTGGAGAGAGTGACAAGGA+GGG | 0.609527 | 1_1:+54793634 | Msa0029460:CDS |
| CTAGTTCAAGGAATCATCGA+AGG | 0.612313 | 1_1:+54793274 | Msa0029460:CDS |
| GTGGCAGAAGCTAAGATGAA+AGG | 0.614706 | 1_1:+54793523 | Msa0029460:CDS |
| GGCTGGAGAGAGTGACAAGG+AGG | 0.627665 | 1_1:+54793633 | Msa0029460:CDS |
| CACCGGTGAGAGGTCGAAGA+CGG | 0.628279 | 1_1:-54793092 | None:intergenic |
| AAGACAGCGGGAAGAACGAA+AGG | 0.630029 | 1_1:-54793157 | None:intergenic |
| GGAAGCAGCGAATCAAGCTA+GGG | 0.630802 | 1_1:+54793495 | Msa0029460:CDS |
| TAGTTCAAGGAATCATCGAA+GGG | 0.630851 | 1_1:+54793275 | Msa0029460:CDS |
| GAAAGTTATTGCTATGCAGA+GGG | 0.630907 | 1_1:+54793612 | Msa0029460:CDS |
| CTAAGGGAAGCTGAGTTGCA+GGG | 0.631632 | 1_1:+54793802 | Msa0029460:CDS |
| ATCAATGCTGAGGCAGTACG+TGG | 0.635980 | 1_1:+54794550 | Msa0029460:CDS |
| TATGAGAAATATTCATGACC+AGG | 0.636387 | 1_1:-54793451 | None:intergenic |
| TCAAAATCAAACGATGTACA+GGG | 0.641066 | 1_1:+54792973 | Msa0029460:exon |
| TAGTGTTGAGTATGAAACCA+AGG | 0.644971 | 1_1:+54793891 | Msa0029460:CDS |
| GAGGGCTGGAGAGAGTGACA+AGG | 0.646522 | 1_1:+54793630 | Msa0029460:CDS |
| GAAAGCGGCGTGGACTAAGG+CGG | 0.652094 | 1_1:+54793741 | Msa0029460:CDS |
| TAAACTCTCGAATCATGTCA+AGG | 0.655320 | 1_1:+54793249 | Msa0029460:CDS |
| TGGACAGTCTTAAACAGAGG+TGG | 0.656626 | 1_1:-54794679 | None:intergenic |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 1_1:+54794505 | Msa0029460:CDS |
| TCATGGACAGTCTTAAACAG+AGG | 0.660499 | 1_1:-54794682 | None:intergenic |
| AGTCGAGGCTGCTAAAGCTG+TGG | 0.666475 | 1_1:+54793777 | Msa0029460:CDS |
| AATGGAGGCGGAATAACGGA+AGG | 0.668536 | 1_1:+54794613 | Msa0029460:CDS |
| AAGGTTCCCATCCAAGCAGG+AGG | 0.669932 | 1_1:-54794721 | None:intergenic |
| GTTGGCTCGAAATCTAGGGA+AGG | 0.671253 | 1_1:+54793550 | Msa0029460:CDS |
| ACTAATGGAGGTGACAATGG+AGG | 0.677352 | 1_1:+54794598 | Msa0029460:CDS |
| TGATTCGAGAGTTTATCATG+AGG | 0.680428 | 1_1:-54793241 | None:intergenic |
| GATGGCTAAGATCAATGCTG+AGG | 0.682349 | 1_1:+54794540 | Msa0029460:CDS |
| GAATCAAGCTAGGGTTGACG+TGG | 0.682564 | 1_1:+54793504 | Msa0029460:CDS |
| CTTTCCTGATCGTCAACACG+AGG | 0.689163 | 1_1:-54793190 | None:intergenic |
| AGAGTTGGCGAAGAAGAAAG+CGG | 0.695769 | 1_1:+54793726 | Msa0029460:CDS |
| AGACGGTGCAAGATTGACCA+GGG | 0.716272 | 1_1:-54793075 | None:intergenic |
| TGGCGAAGAAGAAAGCGGCG+TGG | 0.717862 | 1_1:+54793731 | Msa0029460:CDS |
| AGTTCAAGGAATCATCGAAG+GGG | 0.721843 | 1_1:+54793276 | Msa0029460:CDS |
| AGGACCAATTGTGAAGACAG+CGG | 0.726189 | 1_1:-54793170 | None:intergenic |
| CCATGGTCATCGAAGCAGCG+AGG | 0.728643 | 1_1:-54793309 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAATATTTCTCATATTTA+GGG | + | chr1_1:54793458-54793477 | Msa0029460:CDS | 15.0% |
| !!! | TTAATATGTTATATGGATTA+TGG | + | chr1_1:54794067-54794086 | Msa0029460:intron | 15.0% |
| !!! | TGTTCTAAATTAATTTTGTT+AGG | + | chr1_1:54794143-54794162 | Msa0029460:intron | 15.0% |
| !!! | ATGTTTATTTTTTTAAGTAC+TGG | + | chr1_1:54794209-54794228 | Msa0029460:intron | 15.0% |
| !! | ATGAATATTTCTCATATTTA+GGG | + | chr1_1:54793458-54793477 | Msa0029460:CDS | 15.0% |
| !!! | TTAATATGTTATATGGATTA+TGG | + | chr1_1:54794067-54794086 | Msa0029460:intron | 15.0% |
| !!! | TGTTCTAAATTAATTTTGTT+AGG | + | chr1_1:54794143-54794162 | Msa0029460:intron | 15.0% |
| !!! | ATGTTTATTTTTTTAAGTAC+TGG | + | chr1_1:54794209-54794228 | Msa0029460:intron | 15.0% |
| !! | CATGAATATTTCTCATATTT+AGG | + | chr1_1:54793457-54793476 | Msa0029460:CDS | 20.0% |
| !!! | TATGGAATAGTCAATTTTTT+TGG | + | chr1_1:54794085-54794104 | Msa0029460:intron | 20.0% |
| !! | TGCTAAATTACCAAAATAAA+AGG | - | chr1_1:54794803-54794822 | None:intergenic | 20.0% |
| !! | CATGAATATTTCTCATATTT+AGG | + | chr1_1:54793457-54793476 | Msa0029460:CDS | 20.0% |
| !!! | TATGGAATAGTCAATTTTTT+TGG | + | chr1_1:54794085-54794104 | Msa0029460:intron | 20.0% |
| !! | TGCTAAATTACCAAAATAAA+AGG | - | chr1_1:54794803-54794822 | None:intergenic | 20.0% |
| ! | AAAGAAGAGTTATATTTGCA+TGG | - | chr1_1:54793922-54793941 | None:intergenic | 25.0% |
| !!! | TTAAGTACTGGTTGAAATTT+TGG | + | chr1_1:54794221-54794240 | Msa0029460:intron | 25.0% |
| ! | TTGAACCTAAGATTAGTATT+TGG | + | chr1_1:54794575-54794594 | Msa0029460:CDS | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | - | chr1_1:54794583-54794602 | None:intergenic | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+TGG | + | chr1_1:54794583-54794602 | Msa0029460:CDS | 25.0% |
| ! | AAAGAAGAGTTATATTTGCA+TGG | - | chr1_1:54793922-54793941 | None:intergenic | 25.0% |
| !!! | TTAAGTACTGGTTGAAATTT+TGG | + | chr1_1:54794221-54794240 | Msa0029460:intron | 25.0% |
| ! | TTGAACCTAAGATTAGTATT+TGG | + | chr1_1:54794575-54794594 | Msa0029460:CDS | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | - | chr1_1:54794583-54794602 | None:intergenic | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+TGG | + | chr1_1:54794583-54794602 | Msa0029460:CDS | 25.0% |
| ! | GTTTCAATTTTCTTGTCAAG+AGG | + | chr1_1:54792935-54792954 | Msa0029460:five_prime_UTR | 30.0% |
| ATCAAAATCAAACGATGTAC+AGG | + | chr1_1:54792972-54792991 | Msa0029460:exon | 30.0% | |
| TCAAAATCAAACGATGTACA+GGG | + | chr1_1:54792973-54792992 | Msa0029460:exon | 30.0% | |
| TCAAACTTGCAAAGAAATCA+TGG | + | chr1_1:54793047-54793066 | Msa0029460:CDS | 30.0% | |
| CAAACTTGCAAAGAAATCAT+GGG | + | chr1_1:54793048-54793067 | Msa0029460:CDS | 30.0% | |
| AAATCAGTTTAGCGTATTTG+AGG | - | chr1_1:54793219-54793238 | None:intergenic | 30.0% | |
| TGTAAATCAATAACCCGAAT+TGG | - | chr1_1:54793402-54793421 | None:intergenic | 30.0% | |
| TATGAGAAATATTCATGACC+AGG | - | chr1_1:54793454-54793473 | None:intergenic | 30.0% | |
| ! | GTTGAAATTTTGGATGGTTT+AGG | + | chr1_1:54794231-54794250 | Msa0029460:intron | 30.0% |
| CAAAGAAAAAAGAGGCAAAA+GGG | + | chr1_1:54794401-54794420 | Msa0029460:CDS | 30.0% | |
| ! | AGGGATTACTTGATGATAAA+TGG | + | chr1_1:54794502-54794521 | Msa0029460:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | + | chr1_1:54794505-54794524 | Msa0029460:CDS | 30.0% |
| ATTAGTATTTGGACTAATGG+AGG | + | chr1_1:54794586-54794605 | Msa0029460:CDS | 30.0% | |
| ! | TCCTAATTAAGAGCTTTTGT+CGG | - | chr1_1:54794749-54794768 | None:intergenic | 30.0% |
| !! | AGCAGCAATACCTTTTATTT+TGG | + | chr1_1:54794790-54794809 | Msa0029460:three_prime_UTR | 30.0% |
| ! | GTTTCAATTTTCTTGTCAAG+AGG | + | chr1_1:54792935-54792954 | Msa0029460:five_prime_UTR | 30.0% |
| ATCAAAATCAAACGATGTAC+AGG | + | chr1_1:54792972-54792991 | Msa0029460:exon | 30.0% | |
| TCAAAATCAAACGATGTACA+GGG | + | chr1_1:54792973-54792992 | Msa0029460:exon | 30.0% | |
| TCAAACTTGCAAAGAAATCA+TGG | + | chr1_1:54793047-54793066 | Msa0029460:CDS | 30.0% | |
| CAAACTTGCAAAGAAATCAT+GGG | + | chr1_1:54793048-54793067 | Msa0029460:CDS | 30.0% | |
| AAATCAGTTTAGCGTATTTG+AGG | - | chr1_1:54793219-54793238 | None:intergenic | 30.0% | |
| TGTAAATCAATAACCCGAAT+TGG | - | chr1_1:54793402-54793421 | None:intergenic | 30.0% | |
| TATGAGAAATATTCATGACC+AGG | - | chr1_1:54793454-54793473 | None:intergenic | 30.0% | |
| ! | GTTGAAATTTTGGATGGTTT+AGG | + | chr1_1:54794231-54794250 | Msa0029460:intron | 30.0% |
| CAAAGAAAAAAGAGGCAAAA+GGG | + | chr1_1:54794401-54794420 | Msa0029460:CDS | 30.0% | |
| ! | AGGGATTACTTGATGATAAA+TGG | + | chr1_1:54794502-54794521 | Msa0029460:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | + | chr1_1:54794505-54794524 | Msa0029460:CDS | 30.0% |
| ATTAGTATTTGGACTAATGG+AGG | + | chr1_1:54794586-54794605 | Msa0029460:CDS | 30.0% | |
| ! | TCCTAATTAAGAGCTTTTGT+CGG | - | chr1_1:54794749-54794768 | None:intergenic | 30.0% |
| !! | AGCAGCAATACCTTTTATTT+TGG | + | chr1_1:54794790-54794809 | Msa0029460:three_prime_UTR | 30.0% |
| ! | AAGAACGAAAGGCAGTTTTT+CGG | - | chr1_1:54793149-54793168 | None:intergenic | 35.0% |
| TGATTCGAGAGTTTATCATG+AGG | - | chr1_1:54793244-54793263 | None:intergenic | 35.0% | |
| TAAACTCTCGAATCATGTCA+AGG | + | chr1_1:54793249-54793268 | Msa0029460:CDS | 35.0% | |
| TAGTTCAAGGAATCATCGAA+GGG | + | chr1_1:54793275-54793294 | Msa0029460:CDS | 35.0% | |
| CAACTCGAACTAAACCAATT+CGG | + | chr1_1:54793385-54793404 | Msa0029460:CDS | 35.0% | |
| AACTCGAACTAAACCAATTC+GGG | + | chr1_1:54793386-54793405 | Msa0029460:CDS | 35.0% | |
| CAATGCGAATGTTAAGCAAT+TGG | + | chr1_1:54793420-54793439 | Msa0029460:CDS | 35.0% | |
| GAAAGTTATTGCTATGCAGA+GGG | + | chr1_1:54793612-54793631 | Msa0029460:CDS | 35.0% | |
| !! | GGTTTTTGAGAATCAAAGAG+AGG | + | chr1_1:54793681-54793700 | Msa0029460:CDS | 35.0% |
| ! | TAGTGTTGAGTATGAAACCA+AGG | + | chr1_1:54793891-54793910 | Msa0029460:CDS | 35.0% |
| ! | ATATTTGCATGGACTAACCT+TGG | - | chr1_1:54793911-54793930 | None:intergenic | 35.0% |
| GATAGATTTCGACTTAGACT+TGG | - | chr1_1:54794175-54794194 | None:intergenic | 35.0% | |
| !!! | GTACTGGTTGAAATTTTGGA+TGG | + | chr1_1:54794225-54794244 | Msa0029460:intron | 35.0% |
| AGCAATTCTGTATGAGAAGA+AGG | + | chr1_1:54794300-54794319 | Msa0029460:CDS | 35.0% | |
| GCTATACGCAAAGAAAAAAG+AGG | + | chr1_1:54794393-54794412 | Msa0029460:CDS | 35.0% | |
| GCAAAGAAAAAAGAGGCAAA+AGG | + | chr1_1:54794400-54794419 | Msa0029460:CDS | 35.0% | |
| AATACACTTCTCAATGCACT+TGG | + | chr1_1:54794460-54794479 | Msa0029460:CDS | 35.0% | |
| ! | TTAAGAGCTTTTGTCGGATA+AGG | - | chr1_1:54794743-54794762 | None:intergenic | 35.0% |
| TCCGACAAAAGCTCTTAATT+AGG | + | chr1_1:54794745-54794764 | Msa0029460:exon | 35.0% | |
| GACAAAAGCTCTTAATTAGG+AGG | + | chr1_1:54794748-54794767 | Msa0029460:exon | 35.0% | |
| ATTAGGAGGATGCAAGTATT+AGG | + | chr1_1:54794762-54794781 | Msa0029460:exon | 35.0% | |
| ! | AAGAACGAAAGGCAGTTTTT+CGG | - | chr1_1:54793149-54793168 | None:intergenic | 35.0% |
| TGATTCGAGAGTTTATCATG+AGG | - | chr1_1:54793244-54793263 | None:intergenic | 35.0% | |
| TAAACTCTCGAATCATGTCA+AGG | + | chr1_1:54793249-54793268 | Msa0029460:CDS | 35.0% | |
| TAGTTCAAGGAATCATCGAA+GGG | + | chr1_1:54793275-54793294 | Msa0029460:CDS | 35.0% | |
| CAACTCGAACTAAACCAATT+CGG | + | chr1_1:54793385-54793404 | Msa0029460:CDS | 35.0% | |
| AACTCGAACTAAACCAATTC+GGG | + | chr1_1:54793386-54793405 | Msa0029460:CDS | 35.0% | |
| CAATGCGAATGTTAAGCAAT+TGG | + | chr1_1:54793420-54793439 | Msa0029460:CDS | 35.0% | |
| GAAAGTTATTGCTATGCAGA+GGG | + | chr1_1:54793612-54793631 | Msa0029460:CDS | 35.0% | |
| !! | GGTTTTTGAGAATCAAAGAG+AGG | + | chr1_1:54793681-54793700 | Msa0029460:CDS | 35.0% |
| ! | TAGTGTTGAGTATGAAACCA+AGG | + | chr1_1:54793891-54793910 | Msa0029460:CDS | 35.0% |
| ! | ATATTTGCATGGACTAACCT+TGG | - | chr1_1:54793911-54793930 | None:intergenic | 35.0% |
| GATAGATTTCGACTTAGACT+TGG | - | chr1_1:54794175-54794194 | None:intergenic | 35.0% | |
| !!! | GTACTGGTTGAAATTTTGGA+TGG | + | chr1_1:54794225-54794244 | Msa0029460:intron | 35.0% |
| AGCAATTCTGTATGAGAAGA+AGG | + | chr1_1:54794300-54794319 | Msa0029460:CDS | 35.0% | |
| GCTATACGCAAAGAAAAAAG+AGG | + | chr1_1:54794393-54794412 | Msa0029460:CDS | 35.0% | |
| GCAAAGAAAAAAGAGGCAAA+AGG | + | chr1_1:54794400-54794419 | Msa0029460:CDS | 35.0% | |
| AATACACTTCTCAATGCACT+TGG | + | chr1_1:54794460-54794479 | Msa0029460:CDS | 35.0% | |
| ! | TTAAGAGCTTTTGTCGGATA+AGG | - | chr1_1:54794743-54794762 | None:intergenic | 35.0% |
| TCCGACAAAAGCTCTTAATT+AGG | + | chr1_1:54794745-54794764 | Msa0029460:exon | 35.0% | |
| GACAAAAGCTCTTAATTAGG+AGG | + | chr1_1:54794748-54794767 | Msa0029460:exon | 35.0% | |
| ATTAGGAGGATGCAAGTATT+AGG | + | chr1_1:54794762-54794781 | Msa0029460:exon | 35.0% | |
| ! | AAGAAATCATGGGTTTTCCC+TGG | + | chr1_1:54793058-54793077 | Msa0029460:CDS | 40.0% |
| ! | ACTTCGAAGGTATAGTTCAC+CGG | - | chr1_1:54793112-54793131 | None:intergenic | 40.0% |
| TCAGTTTAGCGTATTTGAGG+AGG | - | chr1_1:54793216-54793235 | None:intergenic | 40.0% | |
| CATGTCAAGGAACTAGTTCA+AGG | + | chr1_1:54793262-54793281 | Msa0029460:CDS | 40.0% | |
| CTAGTTCAAGGAATCATCGA+AGG | + | chr1_1:54793274-54793293 | Msa0029460:CDS | 40.0% | |
| AGTTCAAGGAATCATCGAAG+GGG | + | chr1_1:54793276-54793295 | Msa0029460:CDS | 40.0% | |
| TGCGAATGTTAAGCAATTGG+TGG | + | chr1_1:54793423-54793442 | Msa0029460:CDS | 40.0% | |
| ! | TTTAGGGCAAAAGACGCAAA+TGG | + | chr1_1:54793474-54793493 | Msa0029460:CDS | 40.0% |
| GCTAAGATGAAAGGTGAAGT+TGG | + | chr1_1:54793532-54793551 | Msa0029460:CDS | 40.0% | |
| !! | TGAAGTTGGCTCGAAATCTA+GGG | + | chr1_1:54793546-54793565 | Msa0029460:CDS | 40.0% |
| GAATGCAGCAAAAATTGACG+CGG | + | chr1_1:54793585-54793604 | Msa0029460:CDS | 40.0% | |
| CGAAAGTTATTGCTATGCAG+AGG | + | chr1_1:54793611-54793630 | Msa0029460:CDS | 40.0% | |
| ! | ACAAGGAGGGATTTAGAGTT+AGG | + | chr1_1:54793647-54793666 | Msa0029460:CDS | 40.0% |
| TAGAGTTAGGACTGAAGTGA+AGG | + | chr1_1:54793660-54793679 | Msa0029460:CDS | 40.0% | |
| TTGGATGGTTTAGGTACAAG+AGG | + | chr1_1:54794240-54794259 | Msa0029460:intron | 40.0% | |
| TTTAGGTACAAGAGGCTAAC+TGG | + | chr1_1:54794248-54794267 | Msa0029460:intron | 40.0% | |
| TTAGGTACAAGAGGCTAACT+GGG | + | chr1_1:54794249-54794268 | Msa0029460:intron | 40.0% | |
| CAAAAGGGATTGTGACACTT+GGG | + | chr1_1:54794416-54794435 | Msa0029460:CDS | 40.0% | |
| ! | AAACGACTACACAGCTCTAA+GGG | + | chr1_1:54794483-54794502 | Msa0029460:CDS | 40.0% |
| ! | GGAATAACGGAAGGTTCTAT+GGG | + | chr1_1:54794622-54794641 | Msa0029460:CDS | 40.0% |
| TCATGGACAGTCTTAAACAG+AGG | - | chr1_1:54794685-54794704 | None:intergenic | 40.0% | |
| ! | AAGAAATCATGGGTTTTCCC+TGG | + | chr1_1:54793058-54793077 | Msa0029460:CDS | 40.0% |
| ! | ACTTCGAAGGTATAGTTCAC+CGG | - | chr1_1:54793112-54793131 | None:intergenic | 40.0% |
| TCAGTTTAGCGTATTTGAGG+AGG | - | chr1_1:54793216-54793235 | None:intergenic | 40.0% | |
| CATGTCAAGGAACTAGTTCA+AGG | + | chr1_1:54793262-54793281 | Msa0029460:CDS | 40.0% | |
| CTAGTTCAAGGAATCATCGA+AGG | + | chr1_1:54793274-54793293 | Msa0029460:CDS | 40.0% | |
| AGTTCAAGGAATCATCGAAG+GGG | + | chr1_1:54793276-54793295 | Msa0029460:CDS | 40.0% | |
| TGCGAATGTTAAGCAATTGG+TGG | + | chr1_1:54793423-54793442 | Msa0029460:CDS | 40.0% | |
| ! | TTTAGGGCAAAAGACGCAAA+TGG | + | chr1_1:54793474-54793493 | Msa0029460:CDS | 40.0% |
| GCTAAGATGAAAGGTGAAGT+TGG | + | chr1_1:54793532-54793551 | Msa0029460:CDS | 40.0% | |
| !! | TGAAGTTGGCTCGAAATCTA+GGG | + | chr1_1:54793546-54793565 | Msa0029460:CDS | 40.0% |
| GAATGCAGCAAAAATTGACG+CGG | + | chr1_1:54793585-54793604 | Msa0029460:CDS | 40.0% | |
| CGAAAGTTATTGCTATGCAG+AGG | + | chr1_1:54793611-54793630 | Msa0029460:CDS | 40.0% | |
| ! | ACAAGGAGGGATTTAGAGTT+AGG | + | chr1_1:54793647-54793666 | Msa0029460:CDS | 40.0% |
| TAGAGTTAGGACTGAAGTGA+AGG | + | chr1_1:54793660-54793679 | Msa0029460:CDS | 40.0% | |
| TTGGATGGTTTAGGTACAAG+AGG | + | chr1_1:54794240-54794259 | Msa0029460:intron | 40.0% | |
| TTTAGGTACAAGAGGCTAAC+TGG | + | chr1_1:54794248-54794267 | Msa0029460:intron | 40.0% | |
| TTAGGTACAAGAGGCTAACT+GGG | + | chr1_1:54794249-54794268 | Msa0029460:intron | 40.0% | |
| CAAAAGGGATTGTGACACTT+GGG | + | chr1_1:54794416-54794435 | Msa0029460:CDS | 40.0% | |
| ! | AAACGACTACACAGCTCTAA+GGG | + | chr1_1:54794483-54794502 | Msa0029460:CDS | 40.0% |
| ! | GGAATAACGGAAGGTTCTAT+GGG | + | chr1_1:54794622-54794641 | Msa0029460:CDS | 40.0% |
| TCATGGACAGTCTTAAACAG+AGG | - | chr1_1:54794685-54794704 | None:intergenic | 40.0% | |
| ACTCATGGCTTGAACTTCGA+AGG | - | chr1_1:54793125-54793144 | None:intergenic | 45.0% | |
| AGGACCAATTGTGAAGACAG+CGG | - | chr1_1:54793173-54793192 | None:intergenic | 45.0% | |
| ! | ACCATGGAAGAGGTTTTCAG+AGG | + | chr1_1:54793325-54793344 | Msa0029460:CDS | 45.0% |
| ! | TCCTCTGAAAACCTCTTCCA+TGG | - | chr1_1:54793329-54793348 | None:intergenic | 45.0% |
| GTGGCAGAAGCTAAGATGAA+AGG | + | chr1_1:54793523-54793542 | Msa0029460:CDS | 45.0% | |
| !! | GTGAAGTTGGCTCGAAATCT+AGG | + | chr1_1:54793545-54793564 | Msa0029460:CDS | 45.0% |
| GAATCAAAGAGAGGCTGAAG+TGG | + | chr1_1:54793690-54793709 | Msa0029460:CDS | 45.0% | |
| AGAGTTGGCGAAGAAGAAAG+CGG | + | chr1_1:54793726-54793745 | Msa0029460:CDS | 45.0% | |
| !! | TGCTAAAGCTGTGGCTCTAA+GGG | + | chr1_1:54793786-54793805 | Msa0029460:CDS | 45.0% |
| TCTGTATGAGAAGAAGGCAG+AGG | + | chr1_1:54794306-54794325 | Msa0029460:CDS | 45.0% | |
| GCAAAAGGGATTGTGACACT+TGG | + | chr1_1:54794415-54794434 | Msa0029460:CDS | 45.0% | |
| GAAACGACTACACAGCTCTA+AGG | + | chr1_1:54794482-54794501 | Msa0029460:CDS | 45.0% | |
| TGGTGGCATGTTTCAAGAGA+TGG | + | chr1_1:54794522-54794541 | Msa0029460:CDS | 45.0% | |
| GATGGCTAAGATCAATGCTG+AGG | + | chr1_1:54794540-54794559 | Msa0029460:CDS | 45.0% | |
| TGGACTAATGGAGGTGACAA+TGG | + | chr1_1:54794595-54794614 | Msa0029460:CDS | 45.0% | |
| ACTAATGGAGGTGACAATGG+AGG | + | chr1_1:54794598-54794617 | Msa0029460:CDS | 45.0% | |
| TGACAATGGAGGCGGAATAA+CGG | + | chr1_1:54794609-54794628 | Msa0029460:CDS | 45.0% | |
| ! | CGGAATAACGGAAGGTTCTA+TGG | + | chr1_1:54794621-54794640 | Msa0029460:CDS | 45.0% |
| AGGTTCTATGGGCATGAAAG+AGG | + | chr1_1:54794633-54794652 | Msa0029460:CDS | 45.0% | |
| TGGACAGTCTTAAACAGAGG+TGG | - | chr1_1:54794682-54794701 | None:intergenic | 45.0% | |
| AAGACTGTCCATGAGCAAAC+AGG | + | chr1_1:54794691-54794710 | Msa0029460:CDS | 45.0% | |
| ACTCATGGCTTGAACTTCGA+AGG | - | chr1_1:54793125-54793144 | None:intergenic | 45.0% | |
| AGGACCAATTGTGAAGACAG+CGG | - | chr1_1:54793173-54793192 | None:intergenic | 45.0% | |
| ! | ACCATGGAAGAGGTTTTCAG+AGG | + | chr1_1:54793325-54793344 | Msa0029460:CDS | 45.0% |
| ! | TCCTCTGAAAACCTCTTCCA+TGG | - | chr1_1:54793329-54793348 | None:intergenic | 45.0% |
| GTGGCAGAAGCTAAGATGAA+AGG | + | chr1_1:54793523-54793542 | Msa0029460:CDS | 45.0% | |
| !! | GTGAAGTTGGCTCGAAATCT+AGG | + | chr1_1:54793545-54793564 | Msa0029460:CDS | 45.0% |
| GAATCAAAGAGAGGCTGAAG+TGG | + | chr1_1:54793690-54793709 | Msa0029460:CDS | 45.0% | |
| AGAGTTGGCGAAGAAGAAAG+CGG | + | chr1_1:54793726-54793745 | Msa0029460:CDS | 45.0% | |
| !! | TGCTAAAGCTGTGGCTCTAA+GGG | + | chr1_1:54793786-54793805 | Msa0029460:CDS | 45.0% |
| TCTGTATGAGAAGAAGGCAG+AGG | + | chr1_1:54794306-54794325 | Msa0029460:CDS | 45.0% | |
| GCAAAAGGGATTGTGACACT+TGG | + | chr1_1:54794415-54794434 | Msa0029460:CDS | 45.0% | |
| GAAACGACTACACAGCTCTA+AGG | + | chr1_1:54794482-54794501 | Msa0029460:CDS | 45.0% | |
| TGGTGGCATGTTTCAAGAGA+TGG | + | chr1_1:54794522-54794541 | Msa0029460:CDS | 45.0% | |
| GATGGCTAAGATCAATGCTG+AGG | + | chr1_1:54794540-54794559 | Msa0029460:CDS | 45.0% | |
| TGGACTAATGGAGGTGACAA+TGG | + | chr1_1:54794595-54794614 | Msa0029460:CDS | 45.0% | |
| ACTAATGGAGGTGACAATGG+AGG | + | chr1_1:54794598-54794617 | Msa0029460:CDS | 45.0% | |
| TGACAATGGAGGCGGAATAA+CGG | + | chr1_1:54794609-54794628 | Msa0029460:CDS | 45.0% | |
| ! | CGGAATAACGGAAGGTTCTA+TGG | + | chr1_1:54794621-54794640 | Msa0029460:CDS | 45.0% |
| AGGTTCTATGGGCATGAAAG+AGG | + | chr1_1:54794633-54794652 | Msa0029460:CDS | 45.0% | |
| TGGACAGTCTTAAACAGAGG+TGG | - | chr1_1:54794682-54794701 | None:intergenic | 45.0% | |
| AAGACTGTCCATGAGCAAAC+AGG | + | chr1_1:54794691-54794710 | Msa0029460:CDS | 45.0% | |
| !!! | TTATTTTTTAATATGTTATA+TGG | + | chr1_1:54794060-54794079 | Msa0029460:intron | 5.0% |
| !!! | TTATTTTTTAATATGTTATA+TGG | + | chr1_1:54794060-54794079 | Msa0029460:intron | 5.0% |
| !! | AGCAAAAGCATCCGAGTACC+TGG | + | chr1_1:54792997-54793016 | Msa0029460:CDS | 50.0% |
| TCCGAGTACCTGGTGATAAC+CGG | + | chr1_1:54793007-54793026 | Msa0029460:CDS | 50.0% | |
| TCCGGTTATCACCAGGTACT+CGG | - | chr1_1:54793011-54793030 | None:intergenic | 50.0% | |
| GATGTCTTCGATTCCAGCTC+CGG | - | chr1_1:54793029-54793048 | None:intergenic | 50.0% | |
| AGACGGTGCAAGATTGACCA+GGG | - | chr1_1:54793078-54793097 | None:intergenic | 50.0% | |
| AAGACGGTGCAAGATTGACC+AGG | - | chr1_1:54793079-54793098 | None:intergenic | 50.0% | |
| AGGTATAGTTCACCGGTGAG+AGG | - | chr1_1:54793105-54793124 | None:intergenic | 50.0% | |
| !! | AGGCAGTTTTTCGGCACTCA+TGG | - | chr1_1:54793140-54793159 | None:intergenic | 50.0% |
| AAGACAGCGGGAAGAACGAA+AGG | - | chr1_1:54793160-54793179 | None:intergenic | 50.0% | |
| CTTCCCGCTGTCTTCACAAT+TGG | + | chr1_1:54793166-54793185 | Msa0029460:CDS | 50.0% | |
| GGACCAATTGTGAAGACAGC+GGG | - | chr1_1:54793172-54793191 | None:intergenic | 50.0% | |
| CTTTCCTGATCGTCAACACG+AGG | - | chr1_1:54793193-54793212 | None:intergenic | 50.0% | |
| TGCTTCGATGACCATGGAAG+AGG | + | chr1_1:54793315-54793334 | Msa0029460:CDS | 50.0% | |
| ! | AAGCAATTGGTGGATGTGCC+TGG | + | chr1_1:54793433-54793452 | Msa0029460:CDS | 50.0% |
| TGGAAGCAGCGAATCAAGCT+AGG | + | chr1_1:54793494-54793513 | Msa0029460:CDS | 50.0% | |
| GGAAGCAGCGAATCAAGCTA+GGG | + | chr1_1:54793495-54793514 | Msa0029460:CDS | 50.0% | |
| GAATCAAGCTAGGGTTGACG+TGG | + | chr1_1:54793504-54793523 | Msa0029460:CDS | 50.0% | |
| !! | GTTGGCTCGAAATCTAGGGA+AGG | + | chr1_1:54793550-54793569 | Msa0029460:CDS | 50.0% |
| GTTATTGCTATGCAGAGGGC+TGG | + | chr1_1:54793616-54793635 | Msa0029460:CDS | 50.0% | |
| GGCTGAGGCTAATTCAGAGT+TGG | + | chr1_1:54793711-54793730 | Msa0029460:CDS | 50.0% | |
| ! | CTGCTAAAGCTGTGGCTCTA+AGG | + | chr1_1:54793785-54793804 | Msa0029460:CDS | 50.0% |
| TCTAAGGGAAGCTGAGTTGC+AGG | + | chr1_1:54793801-54793820 | Msa0029460:CDS | 50.0% | |
| CTAAGGGAAGCTGAGTTGCA+GGG | + | chr1_1:54793802-54793821 | Msa0029460:CDS | 50.0% | |
| GTGACACTTGGGAATGCTCA+AGG | + | chr1_1:54794427-54794446 | Msa0029460:CDS | 50.0% | |
| ATCAATGCTGAGGCAGTACG+TGG | + | chr1_1:54794550-54794569 | Msa0029460:CDS | 50.0% | |
| AATGGAGGTGACAATGGAGG+CGG | + | chr1_1:54794601-54794620 | Msa0029460:CDS | 50.0% | |
| ! | AATGGAGGCGGAATAACGGA+AGG | + | chr1_1:54794613-54794632 | Msa0029460:CDS | 50.0% |
| ATGGGCATGAAAGAGGTTGC+TGG | + | chr1_1:54794640-54794659 | Msa0029460:CDS | 50.0% | |
| GCAACATGCCTGTTTGCTCA+TGG | - | chr1_1:54794702-54794721 | None:intergenic | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | + | chr1_1:54794715-54794734 | Msa0029460:CDS | 50.0% | |
| GATAAGGTTCCCATCCAAGC+AGG | - | chr1_1:54794727-54794746 | None:intergenic | 50.0% | |
| !! | AGCAAAAGCATCCGAGTACC+TGG | + | chr1_1:54792997-54793016 | Msa0029460:CDS | 50.0% |
| TCCGAGTACCTGGTGATAAC+CGG | + | chr1_1:54793007-54793026 | Msa0029460:CDS | 50.0% | |
| TCCGGTTATCACCAGGTACT+CGG | - | chr1_1:54793011-54793030 | None:intergenic | 50.0% | |
| GATGTCTTCGATTCCAGCTC+CGG | - | chr1_1:54793029-54793048 | None:intergenic | 50.0% | |
| AGACGGTGCAAGATTGACCA+GGG | - | chr1_1:54793078-54793097 | None:intergenic | 50.0% | |
| AAGACGGTGCAAGATTGACC+AGG | - | chr1_1:54793079-54793098 | None:intergenic | 50.0% | |
| AGGTATAGTTCACCGGTGAG+AGG | - | chr1_1:54793105-54793124 | None:intergenic | 50.0% | |
| !! | AGGCAGTTTTTCGGCACTCA+TGG | - | chr1_1:54793140-54793159 | None:intergenic | 50.0% |
| AAGACAGCGGGAAGAACGAA+AGG | - | chr1_1:54793160-54793179 | None:intergenic | 50.0% | |
| CTTCCCGCTGTCTTCACAAT+TGG | + | chr1_1:54793166-54793185 | Msa0029460:CDS | 50.0% | |
| GGACCAATTGTGAAGACAGC+GGG | - | chr1_1:54793172-54793191 | None:intergenic | 50.0% | |
| CTTTCCTGATCGTCAACACG+AGG | - | chr1_1:54793193-54793212 | None:intergenic | 50.0% | |
| TGCTTCGATGACCATGGAAG+AGG | + | chr1_1:54793315-54793334 | Msa0029460:CDS | 50.0% | |
| ! | AAGCAATTGGTGGATGTGCC+TGG | + | chr1_1:54793433-54793452 | Msa0029460:CDS | 50.0% |
| TGGAAGCAGCGAATCAAGCT+AGG | + | chr1_1:54793494-54793513 | Msa0029460:CDS | 50.0% | |
| GGAAGCAGCGAATCAAGCTA+GGG | + | chr1_1:54793495-54793514 | Msa0029460:CDS | 50.0% | |
| GAATCAAGCTAGGGTTGACG+TGG | + | chr1_1:54793504-54793523 | Msa0029460:CDS | 50.0% | |
| !! | GTTGGCTCGAAATCTAGGGA+AGG | + | chr1_1:54793550-54793569 | Msa0029460:CDS | 50.0% |
| GTTATTGCTATGCAGAGGGC+TGG | + | chr1_1:54793616-54793635 | Msa0029460:CDS | 50.0% | |
| GGCTGAGGCTAATTCAGAGT+TGG | + | chr1_1:54793711-54793730 | Msa0029460:CDS | 50.0% | |
| ! | CTGCTAAAGCTGTGGCTCTA+AGG | + | chr1_1:54793785-54793804 | Msa0029460:CDS | 50.0% |
| TCTAAGGGAAGCTGAGTTGC+AGG | + | chr1_1:54793801-54793820 | Msa0029460:CDS | 50.0% | |
| CTAAGGGAAGCTGAGTTGCA+GGG | + | chr1_1:54793802-54793821 | Msa0029460:CDS | 50.0% | |
| GTGACACTTGGGAATGCTCA+AGG | + | chr1_1:54794427-54794446 | Msa0029460:CDS | 50.0% | |
| ATCAATGCTGAGGCAGTACG+TGG | + | chr1_1:54794550-54794569 | Msa0029460:CDS | 50.0% | |
| AATGGAGGTGACAATGGAGG+CGG | + | chr1_1:54794601-54794620 | Msa0029460:CDS | 50.0% | |
| ! | AATGGAGGCGGAATAACGGA+AGG | + | chr1_1:54794613-54794632 | Msa0029460:CDS | 50.0% |
| ATGGGCATGAAAGAGGTTGC+TGG | + | chr1_1:54794640-54794659 | Msa0029460:CDS | 50.0% | |
| GCAACATGCCTGTTTGCTCA+TGG | - | chr1_1:54794702-54794721 | None:intergenic | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | + | chr1_1:54794715-54794734 | Msa0029460:CDS | 50.0% | |
| GATAAGGTTCCCATCCAAGC+AGG | - | chr1_1:54794727-54794746 | None:intergenic | 50.0% | |
| TACCTGGTGATAACCGGAGC+TGG | + | chr1_1:54793013-54793032 | Msa0029460:CDS | 55.0% | |
| TTCCAGCTCCGGTTATCACC+AGG | - | chr1_1:54793018-54793037 | None:intergenic | 55.0% | |
| ! | TGGTCCTCGTGTTGACGATC+AGG | + | chr1_1:54793186-54793205 | Msa0029460:CDS | 55.0% |
| GCTGGAGAGAGTGACAAGGA+GGG | + | chr1_1:54793634-54793653 | Msa0029460:CDS | 55.0% | |
| AAGAGAGGCTGAAGTGGCTG+AGG | + | chr1_1:54793696-54793715 | Msa0029460:CDS | 55.0% | |
| ! | GAAGAAAGCGGCGTGGACTA+AGG | + | chr1_1:54793738-54793757 | Msa0029460:CDS | 55.0% |
| AGTCGAGGCTGCTAAAGCTG+TGG | + | chr1_1:54793777-54793796 | Msa0029460:CDS | 55.0% | |
| AGTTGCAGGGTGAGGTTGAG+AGG | + | chr1_1:54793815-54793834 | Msa0029460:CDS | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | + | chr1_1:54794714-54794733 | Msa0029460:CDS | 55.0% | |
| AAGGTTCCCATCCAAGCAGG+AGG | - | chr1_1:54794724-54794743 | None:intergenic | 55.0% | |
| TACCTGGTGATAACCGGAGC+TGG | + | chr1_1:54793013-54793032 | Msa0029460:CDS | 55.0% | |
| TTCCAGCTCCGGTTATCACC+AGG | - | chr1_1:54793018-54793037 | None:intergenic | 55.0% | |
| ! | TGGTCCTCGTGTTGACGATC+AGG | + | chr1_1:54793186-54793205 | Msa0029460:CDS | 55.0% |
| GCTGGAGAGAGTGACAAGGA+GGG | + | chr1_1:54793634-54793653 | Msa0029460:CDS | 55.0% | |
| AAGAGAGGCTGAAGTGGCTG+AGG | + | chr1_1:54793696-54793715 | Msa0029460:CDS | 55.0% | |
| ! | GAAGAAAGCGGCGTGGACTA+AGG | + | chr1_1:54793738-54793757 | Msa0029460:CDS | 55.0% |
| AGTCGAGGCTGCTAAAGCTG+TGG | + | chr1_1:54793777-54793796 | Msa0029460:CDS | 55.0% | |
| AGTTGCAGGGTGAGGTTGAG+AGG | + | chr1_1:54793815-54793834 | Msa0029460:CDS | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | + | chr1_1:54794714-54794733 | Msa0029460:CDS | 55.0% | |
| AAGGTTCCCATCCAAGCAGG+AGG | - | chr1_1:54794724-54794743 | None:intergenic | 55.0% | |
| CACCGTCTTCGACCTCTCAC+CGG | + | chr1_1:54793090-54793109 | Msa0029460:CDS | 60.0% | |
| CACCGGTGAGAGGTCGAAGA+CGG | - | chr1_1:54793095-54793114 | None:intergenic | 60.0% | |
| CCATGGTCATCGAAGCAGCG+AGG | - | chr1_1:54793312-54793331 | None:intergenic | 60.0% | |
| CCTCGCTGCTTCGATGACCA+TGG | + | chr1_1:54793309-54793328 | Msa0029460:CDS | 60.0% | |
| GAGGGCTGGAGAGAGTGACA+AGG | + | chr1_1:54793630-54793649 | Msa0029460:CDS | 60.0% | |
| GGCTGGAGAGAGTGACAAGG+AGG | + | chr1_1:54793633-54793652 | Msa0029460:CDS | 60.0% | |
| TGGCGAAGAAGAAAGCGGCG+TGG | + | chr1_1:54793731-54793750 | Msa0029460:CDS | 60.0% | |
| ! | GAAAGCGGCGTGGACTAAGG+CGG | + | chr1_1:54793741-54793760 | Msa0029460:CDS | 60.0% |
| ! | GTGGACTAAGGCGGCTCAAG+TGG | + | chr1_1:54793750-54793769 | Msa0029460:CDS | 60.0% |
| GGCTCAAGTGGCTGAAGTCG+AGG | + | chr1_1:54793762-54793781 | Msa0029460:CDS | 60.0% | |
| GGAAGCTGAGTTGCAGGGTG+AGG | + | chr1_1:54793807-54793826 | Msa0029460:CDS | 60.0% | |
| CAGGCATGTTGCCTCCTGCT+TGG | + | chr1_1:54794710-54794729 | Msa0029460:CDS | 60.0% | |
| CACCGTCTTCGACCTCTCAC+CGG | + | chr1_1:54793090-54793109 | Msa0029460:CDS | 60.0% | |
| CACCGGTGAGAGGTCGAAGA+CGG | - | chr1_1:54793095-54793114 | None:intergenic | 60.0% | |
| CCATGGTCATCGAAGCAGCG+AGG | - | chr1_1:54793312-54793331 | None:intergenic | 60.0% | |
| CCTCGCTGCTTCGATGACCA+TGG | + | chr1_1:54793309-54793328 | Msa0029460:CDS | 60.0% | |
| GAGGGCTGGAGAGAGTGACA+AGG | + | chr1_1:54793630-54793649 | Msa0029460:CDS | 60.0% | |
| GGCTGGAGAGAGTGACAAGG+AGG | + | chr1_1:54793633-54793652 | Msa0029460:CDS | 60.0% | |
| TGGCGAAGAAGAAAGCGGCG+TGG | + | chr1_1:54793731-54793750 | Msa0029460:CDS | 60.0% | |
| ! | GAAAGCGGCGTGGACTAAGG+CGG | + | chr1_1:54793741-54793760 | Msa0029460:CDS | 60.0% |
| ! | GTGGACTAAGGCGGCTCAAG+TGG | + | chr1_1:54793750-54793769 | Msa0029460:CDS | 60.0% |
| GGCTCAAGTGGCTGAAGTCG+AGG | + | chr1_1:54793762-54793781 | Msa0029460:CDS | 60.0% | |
| GGAAGCTGAGTTGCAGGGTG+AGG | + | chr1_1:54793807-54793826 | Msa0029460:CDS | 60.0% | |
| CAGGCATGTTGCCTCCTGCT+TGG | + | chr1_1:54794710-54794729 | Msa0029460:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 54792931 | 54794869 | 54792931 | ID=Msa0029460;Name=Msa0029460 |
| chr1_1 | mRNA | 54792931 | 54794869 | 54792931 | ID=Msa0029460-mRNA-1;Parent=Msa0029460;Name=Msa0029460-mRNA-1;_AED=0.01;_eAED=0.01;_QI=55|1|1|1|1|1|2|107|478 |
| chr1_1 | exon | 54792931 | 54793912 | 54792931 | ID=Msa0029460-mRNA-1:exon:16346;Parent=Msa0029460-mRNA-1 |
| chr1_1 | exon | 54794253 | 54794869 | 54794253 | ID=Msa0029460-mRNA-1:exon:16347;Parent=Msa0029460-mRNA-1 |
| chr1_1 | five_prime_UTR | 54792931 | 54792985 | 54792931 | ID=Msa0029460-mRNA-1:five_prime_utr;Parent=Msa0029460-mRNA-1 |
| chr1_1 | CDS | 54792986 | 54793912 | 54792986 | ID=Msa0029460-mRNA-1:cds;Parent=Msa0029460-mRNA-1 |
| chr1_1 | CDS | 54794253 | 54794762 | 54794253 | ID=Msa0029460-mRNA-1:cds;Parent=Msa0029460-mRNA-1 |
| chr1_1 | three_prime_UTR | 54794763 | 54794869 | 54794763 | ID=Msa0029460-mRNA-1:three_prime_utr;Parent=Msa0029460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
