AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1298180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1298180 MtrunA17_Chr4g0055541 95.736 258 7 1 1 254 1 258 0.0 501
Msa1298180 MtrunA17_Chr4g0055531 76.923 78 7 3 176 253 1 67 5.77e-31 109
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1298180 AT4G17600.1 58.209 268 82 9 9 253 1 261 6.94e-94 277
Msa1298180 AT5G47110.1 54.231 260 98 3 5 250 1 253 2.43e-92 273

Find 79 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTAAGTGAATGTGAAAT+TGG 0.145280 8_3:+58891909 Msa1298180:three_prime_UTR
TTGTCATTGCTGGATGATTC+TGG 0.199235 8_3:-58891272 None:intergenic
CCTGAAGCTGAACTACTTAA+TGG 0.270926 8_3:+58891356 Msa1298180:CDS
CTTGGGATTTGATGCAGTTT+AGG 0.275261 8_3:+58889809 Msa1298180:CDS
CAGAGGCAAGAAGGAGAAAA+TGG 0.288966 8_3:+58891237 Msa1298180:intron
AGGATTCTTTATGACATATC+TGG 0.306621 8_3:+58891500 Msa1298180:CDS
CTAGATGGGTTGCTGGGACT+TGG 0.308595 8_3:+58889791 Msa1298180:CDS
GTTGTTGCTGTGATGGGGTT+TGG 0.321435 8_3:-58889572 None:intergenic
TCCTGTTGCTGAGGAGGTTA+AGG 0.324053 8_3:+58889747 Msa1298180:CDS
AATATCTCTGTTGGGACAAA+TGG 0.327366 8_3:+58889709 Msa1298180:CDS
AACAACTATGTCTATGTCTA+TGG 0.327759 8_3:+58889501 Msa1298180:CDS
CCATTAAGTAGTTCAGCTTC+AGG 0.328770 8_3:-58891356 None:intergenic
TGCAAAAGAAGTTGTTCATT+TGG 0.330402 8_3:-58891554 None:intergenic
GTGGATCCTAGATGGGTTGC+TGG 0.337107 8_3:+58889784 Msa1298180:CDS
TAGATGGGTTGCTGGGACTT+GGG 0.360135 8_3:+58889792 Msa1298180:CDS
GCAGGTCGTGCCGCAATGAT+AGG 0.391276 8_3:+58891480 Msa1298180:intron
CACTACAGGATTGTCATTGC+TGG 0.391810 8_3:-58891282 None:intergenic
TCTATCTCATCCTTTGAGAA+TGG 0.407619 8_3:-58889351 None:intergenic
ACCTTAACCTCCTCAGCAAC+AGG 0.409183 8_3:-58889748 None:intergenic
AAAGGAGAGAGGGAGAATAA+AGG 0.426062 8_3:-58889628 None:intergenic
TGTCATTGCTGGATGATTCT+GGG 0.426373 8_3:-58891271 None:intergenic
CACCTCCATTGTACCTTGGT+GGG 0.440364 8_3:+58891310 Msa1298180:CDS
CCATTGTACCTTGGTGGGCA+TGG 0.442929 8_3:+58891315 Msa1298180:CDS
ACACCTCCATTGTACCTTGG+TGG 0.444291 8_3:+58891309 Msa1298180:CDS
GAGATAGAAGTGAGAGAGAG+AGG 0.445148 8_3:+58889366 Msa1298180:five_prime_UTR
AAAGAGGTTGTTGCTGTGAT+GGG 0.448159 8_3:-58889578 None:intergenic
TCTTAAGTGAATGTGAAATT+GGG 0.450263 8_3:+58891910 Msa1298180:three_prime_UTR
GAGGAGGTTAAGGTTTCTAC+TGG 0.454044 8_3:+58889757 Msa1298180:CDS
CTTGGTGGGCATGGATCAAA+AGG 0.454670 8_3:+58891324 Msa1298180:CDS
CTATCTCATCCTTTGAGAAT+GGG 0.455940 8_3:-58889350 None:intergenic
TCTCCTTTGAGAGCTTCAGC+TGG 0.464697 8_3:+58889643 Msa1298180:CDS
CAAGTCCCAGCAACCCATCT+AGG 0.465863 8_3:-58889790 None:intergenic
GTCTGAGAGTGAGAGTAAAG+AGG 0.470984 8_3:-58889594 None:intergenic
TGCTGTTCCTGTTGCTGAGG+AGG 0.473204 8_3:+58889741 Msa1298180:CDS
GTAGTTCAGCTTCAGGGAGA+TGG 0.482198 8_3:-58891349 None:intergenic
TGGGATGCTGTTATTGATGC+TGG 0.487504 8_3:+58889850 Msa1298180:CDS
TATCTGGTCGATAGCTTGAC+AGG 0.493166 8_3:+58891516 Msa1298180:CDS
ACAAGCAATGGCAAGCAACT+TGG 0.494549 8_3:+58891676 Msa1298180:CDS
GTCCCAACAGAGATATTCTC+AGG 0.497364 8_3:-58889703 None:intergenic
CTGAAGCTCTCAAAGGAGAG+AGG 0.497577 8_3:-58889639 None:intergenic
ATATCTCTGTTGGGACAAAT+GGG 0.501225 8_3:+58889710 Msa1298180:CDS
CATTAAGTAGTTCAGCTTCA+GGG 0.512069 8_3:-58891355 None:intergenic
CACCTGAGAATATCTCTGTT+GGG 0.512810 8_3:+58889701 Msa1298180:CDS
AACTCTTCTCTTCGTAGCAG+TGG 0.516899 8_3:+58891578 Msa1298180:CDS
GTGGTTGAGATTCTAGTAAG+AGG 0.522550 8_3:-58889535 None:intergenic
TGGATCCTAGATGGGTTGCT+GGG 0.524372 8_3:+58889785 Msa1298180:CDS
CCACCTGAGAATATCTCTGT+TGG 0.527412 8_3:+58889700 Msa1298180:CDS
TAAAGAGGTTGTTGCTGTGA+TGG 0.527773 8_3:-58889579 None:intergenic
TGAAGCTCTCAAAGGAGAGA+GGG 0.529054 8_3:-58889638 None:intergenic
ACTCTTCTCTTCGTAGCAGT+GGG 0.529406 8_3:+58891579 Msa1298180:CDS
CATAGACATAGTTGTTGACA+TGG 0.536011 8_3:-58889494 None:intergenic
TTGACACCTCCATTGTACCT+TGG 0.538618 8_3:+58891306 Msa1298180:CDS
TTCTGCTGTTCCTGTTGCTG+AGG 0.541706 8_3:+58889738 Msa1298180:CDS
GCACTAGCAAGATTATAATA+CGG 0.556628 8_3:-58891791 None:intergenic
GAGAGAGGGAGAATAAAGGA+AGG 0.556971 8_3:-58889624 None:intergenic
GCAATGGCAAGCAACTTGGC+AGG 0.558161 8_3:+58891680 Msa1298180:CDS
GTTCCAGCTGAAGCTCTCAA+AGG 0.564912 8_3:-58889646 None:intergenic
ATGGAGGTGTCAAACACTAC+AGG 0.565063 8_3:-58891296 None:intergenic
ACAGAGATATTCTCAGGTGG+TGG 0.567214 8_3:-58889697 None:intergenic
CCATGCCCACCAAGGTACAA+TGG 0.590303 8_3:-58891315 None:intergenic
AAGAGGTTGTTGCTGTGATG+GGG 0.604087 8_3:-58889577 None:intergenic
ACTTCTCATCAGGAAGAATG+AGG 0.608234 8_3:+58891608 Msa1298180:CDS
ATTAAGAGACAAAATGCGGT+AGG 0.608595 8_3:-58891760 None:intergenic
TCTTCTCTTCGTAGCAGTGG+GGG 0.615034 8_3:+58891581 Msa1298180:CDS
GTACTTGTGCCCATTCTCAA+AGG 0.615059 8_3:+58889341 Msa1298180:five_prime_UTR
CTTCTCTTCGTAGCAGTGGG+GGG 0.622227 8_3:+58891582 Msa1298180:CDS
CTCTTCTCTTCGTAGCAGTG+GGG 0.624987 8_3:+58891580 Msa1298180:CDS
CATAAAGAATCCTATCATTG+CGG 0.653449 8_3:-58891490 None:intergenic
GTGAAGTGAACTAGTGAGGT+GGG 0.653474 8_3:-58889304 None:intergenic
GTCGATAGCTTGACAGGAGT+AGG 0.654568 8_3:+58891522 Msa1298180:CDS
TTTGGAGAGTGAAGAATGAG+TGG 0.655905 8_3:-58889554 None:intergenic
AATAACAGCATCCCAATCAG+TGG 0.659865 8_3:-58889842 None:intergenic
ATGATGTTAGTATAAGTGTG+TGG 0.677703 8_3:-58889455 None:intergenic
ACAAGTACAACAACACAATG+AGG 0.689410 8_3:-58889326 None:intergenic
CCAACAGAGATATTCTCAGG+TGG 0.707278 8_3:-58889700 None:intergenic
TGCCCACCAAGGTACAATGG+AGG 0.708718 8_3:-58891312 None:intergenic
GGTGAAGTGAACTAGTGAGG+TGG 0.717626 8_3:-58889305 None:intergenic
TGAGGTGAAGTGAACTAGTG+AGG 0.734267 8_3:-58889308 None:intergenic
CTATATTAAGAGACAAAATG+CGG 0.743314 8_3:-58891764 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTACAATTATTTAATTAGAA+GGG - chr8_3:58891023-58891042 None:intergenic 10.0%
!!! AAATTTAGAATAACTAAATC+AGG - chr8_3:58890152-58890171 None:intergenic 15.0%
!!! ATTTAGTGATTAATTTGTTA+AGG - chr8_3:58890276-58890295 None:intergenic 15.0%
!! CTTACAATTATTTAATTAGA+AGG - chr8_3:58891024-58891043 None:intergenic 15.0%
!! AGAAATAGAAATAAAATTTG+AGG - chr8_3:58891153-58891172 None:intergenic 15.0%
!!! TATTTCTATTTCTATATACT+AGG + chr8_3:58891160-58891179 Msa1298180:intron 15.0%
!!! TGATACTTTTAAGAAATTAT+TGG + chr8_3:58891635-58891654 Msa1298180:CDS 15.0%
!! AAACAATGAACTTAAAGAAA+AGG - chr8_3:58889887-58889906 None:intergenic 20.0%
!! TATGTTAACTGAATAATAAG+TGG + chr8_3:58890039-58890058 Msa1298180:intron 20.0%
!! CTACTAATCATATTGATATA+GGG + chr8_3:58891077-58891096 Msa1298180:intron 20.0%
!!! TACTTTTAAGAAATTATTGG+AGG + chr8_3:58891638-58891657 Msa1298180:CDS 20.0%
! ACTTAAAGAAAAGGTAGAAA+AGG - chr8_3:58889878-58889897 None:intergenic 25.0%
!!! CTTTAAGTTCATTGTTTTGT+AGG + chr8_3:58889890-58889909 Msa1298180:intron 25.0%
! TTAAACTCTATAGTAGGAAA+TGG - chr8_3:58889999-58890018 None:intergenic 25.0%
! AGGAAATTAAACTCTATAGT+AGG - chr8_3:58890005-58890024 None:intergenic 25.0%
! AACATAAATCATCAATCAAG+AGG - chr8_3:58890025-58890044 None:intergenic 25.0%
!!! GATTAATTTGTTAAGGCAAT+GGG - chr8_3:58890269-58890288 None:intergenic 25.0%
!!! TGATTAATTTGTTAAGGCAA+TGG - chr8_3:58890270-58890289 None:intergenic 25.0%
!! TCTGTTAATAAAAAAAGCAC+AGG + chr8_3:58890646-58890665 Msa1298180:intron 25.0%
!! CTGTTAATAAAAAAAGCACA+GGG + chr8_3:58890647-58890666 Msa1298180:intron 25.0%
!! TGTTAATAAAAAAAGCACAG+GGG + chr8_3:58890648-58890667 Msa1298180:intron 25.0%
!! AGTAGAAAGTTAAAGAGTAT+AGG - chr8_3:58890765-58890784 None:intergenic 25.0%
! AAAATGCAGAAGAAACAAAT+TGG - chr8_3:58890793-58890812 None:intergenic 25.0%
!!! AATTTGTTTCTTCTGCATTT+TGG + chr8_3:58890792-58890811 Msa1298180:intron 25.0%
! TAGACGGTAATTGTATAATA+GGG + chr8_3:58890961-58890980 Msa1298180:intron 25.0%
!! ATCCTCTTTTTATGATCAAA+AGG + chr8_3:58891045-58891064 Msa1298180:intron 25.0%
!! TCCTCTTTTTATGATCAAAA+GGG + chr8_3:58891046-58891065 Msa1298180:intron 25.0%
! ATCAATATGATTAGTAGCAA+TGG - chr8_3:58891074-58891093 None:intergenic 25.0%
! GCTACTAATCATATTGATAT+AGG + chr8_3:58891076-58891095 Msa1298180:intron 25.0%
!! AATGTACTCATTTTCTGATT+TGG + chr8_3:58891201-58891220 Msa1298180:intron 25.0%
! AAAATGAAACGAGAAAGTAA+AGG + chr8_3:58891399-58891418 Msa1298180:intron 25.0%
! CTATATTAAGAGACAAAATG+CGG - chr8_3:58891767-58891786 None:intergenic 25.0%
! TTCTTAAGTGAATGTGAAAT+TGG + chr8_3:58891909-58891928 Msa1298180:three_prime_UTR 25.0%
! TCTTAAGTGAATGTGAAATT+GGG + chr8_3:58891910-58891929 Msa1298180:three_prime_UTR 25.0%
ATGATGTTAGTATAAGTGTG+TGG - chr8_3:58889458-58889477 None:intergenic 30.0%
AACAACTATGTCTATGTCTA+TGG + chr8_3:58889501-58889520 Msa1298180:CDS 30.0%
!!! GAGAATAAAGGAAGGTTTTT+TGG - chr8_3:58889619-58889638 None:intergenic 30.0%
TTGATGCAGTTTAGGAAAAA+TGG + chr8_3:58889817-58889836 Msa1298180:CDS 30.0%
TGAAATTCGTTTACTTCCAT+AGG - chr8_3:58890086-58890105 None:intergenic 30.0%
!!! GAAGAAATCTGTGTTTTTTG+TGG + chr8_3:58890124-58890143 Msa1298180:intron 30.0%
AAGGATTATGTAGGAGATTT+AGG + chr8_3:58890219-58890238 Msa1298180:intron 30.0%
ACTAAATATTACCCACATAG+TGG + chr8_3:58890289-58890308 Msa1298180:intron 30.0%
CTAAATATTACCCACATAGT+GGG + chr8_3:58890290-58890309 Msa1298180:intron 30.0%
! TAGTGTATTTAGTTTACTGC+TGG + chr8_3:58890419-58890438 Msa1298180:intron 30.0%
TTTATCTTAACAGCTGCTAA+AGG - chr8_3:58890611-58890630 None:intergenic 30.0%
! TTAAAGAGTATAGGAAGACT+AGG - chr8_3:58890756-58890775 None:intergenic 30.0%
GTAGACGGTAATTGTATAAT+AGG + chr8_3:58890960-58890979 Msa1298180:intron 30.0%
ATTAGAAGGGTAAAGATCAA+AGG - chr8_3:58891010-58891029 None:intergenic 30.0%
! CCTCTTTTTATGATCAAAAG+GGG + chr8_3:58891047-58891066 Msa1298180:intron 30.0%
! CTCTTTTTATGATCAAAAGG+GGG + chr8_3:58891048-58891067 Msa1298180:intron 30.0%
!!! AAAGGTTGTTTTTCGATAAG+AGG + chr8_3:58891417-58891436 Msa1298180:intron 30.0%
!!! AAGGTTGTTTTTCGATAAGA+GGG + chr8_3:58891418-58891437 Msa1298180:intron 30.0%
ACTTTGTTAACCTTTCTTCT+TGG + chr8_3:58891450-58891469 Msa1298180:intron 30.0%
CTTTGTTAACCTTTCTTCTT+GGG + chr8_3:58891451-58891470 Msa1298180:intron 30.0%
CATAAAGAATCCTATCATTG+CGG - chr8_3:58891493-58891512 None:intergenic 30.0%
AGGATTCTTTATGACATATC+TGG + chr8_3:58891500-58891519 Msa1298180:CDS 30.0%
TGCAAAAGAAGTTGTTCATT+TGG - chr8_3:58891557-58891576 None:intergenic 30.0%
! CTACATTTTATGACAAGCAA+TGG + chr8_3:58891664-58891683 Msa1298180:CDS 30.0%
CACTTCCAAAAAAGATTAGT+GGG + chr8_3:58891716-58891735 Msa1298180:exon 30.0%
!!! ACAATCCCACTAATCTTTTT+TGG - chr8_3:58891724-58891743 None:intergenic 30.0%
GCACTAGCAAGATTATAATA+CGG - chr8_3:58891794-58891813 None:intergenic 30.0%
! TTTTTGTATGTTCGCAATGT+AGG + chr8_3:58891882-58891901 Msa1298180:three_prime_UTR 30.0%
ACAAGTACAACAACACAATG+AGG - chr8_3:58889329-58889348 None:intergenic 35.0%
! CTATCTCATCCTTTGAGAAT+GGG - chr8_3:58889353-58889372 None:intergenic 35.0%
! TCTATCTCATCCTTTGAGAA+TGG - chr8_3:58889354-58889373 None:intergenic 35.0%
CATAGACATAGTTGTTGACA+TGG - chr8_3:58889497-58889516 None:intergenic 35.0%
AATATCTCTGTTGGGACAAA+TGG + chr8_3:58889709-58889728 Msa1298180:CDS 35.0%
ATATCTCTGTTGGGACAAAT+GGG + chr8_3:58889710-58889729 Msa1298180:CDS 35.0%
!!! TAAGGTTTCTACTGGTTTTG+TGG + chr8_3:58889765-58889784 Msa1298180:CDS 35.0%
! GAAAAATGGTACCACTGATT+GGG + chr8_3:58889831-58889850 Msa1298180:CDS 35.0%
CTGAATAATAAGTGGTACTG+TGG + chr8_3:58890047-58890066 Msa1298180:intron 35.0%
ACCACTAGACTAATTCTTCA+GGG - chr8_3:58890180-58890199 None:intergenic 35.0%
! AAGAATTAGTCTAGTGGTCT+GGG + chr8_3:58890182-58890201 Msa1298180:intron 35.0%
! ACTCTGAAGAAGGATTATGT+AGG + chr8_3:58890210-58890229 Msa1298180:intron 35.0%
AATAACCATTGATGAGTCCA+AGG - chr8_3:58890364-58890383 None:intergenic 35.0%
TCAATGGTTATTCCTTCTTC+TGG + chr8_3:58890372-58890391 Msa1298180:intron 35.0%
CAATGGTTATTCCTTCTTCT+GGG + chr8_3:58890373-58890392 Msa1298180:intron 35.0%
TCAAAAAGCAGTGTGTTTCA+TGG - chr8_3:58890529-58890548 None:intergenic 35.0%
!!! TGCTTTTTGAGTTGAAGAAG+AGG + chr8_3:58890539-58890558 Msa1298180:intron 35.0%
!! AAAGATCTGGTTTGTTGAGT+GGG + chr8_3:58890564-58890583 Msa1298180:intron 35.0%
! CTCTTGATTTTTGCAAAGCA+GGG - chr8_3:58890686-58890705 None:intergenic 35.0%
!! TGGTTTTACATGGAAAGACA+TGG + chr8_3:58890820-58890839 Msa1298180:intron 35.0%
TCTACATCAGTTTCATGCTT+TGG - chr8_3:58890866-58890885 None:intergenic 35.0%
ATGTAGACTTAGAGTCAGTT+TGG + chr8_3:58890879-58890898 Msa1298180:intron 35.0%
TGTAGACTTAGAGTCAGTTT+GGG + chr8_3:58890880-58890899 Msa1298180:intron 35.0%
AGTCAGTTTGGGTAAACTTA+TGG + chr8_3:58890891-58890910 Msa1298180:intron 35.0%
AAAAGTTTCTTGCAGTACAG+CGG + chr8_3:58890926-58890945 Msa1298180:intron 35.0%
! CCCCTTTTGATCATAAAAAG+AGG - chr8_3:58891050-58891069 None:intergenic 35.0%
! TCTCTTTTACAGTTGGCATA+AGG + chr8_3:58891104-58891123 Msa1298180:intron 35.0%
CATTAAGTAGTTCAGCTTCA+GGG - chr8_3:58891358-58891377 None:intergenic 35.0%
GCACTTCCAAAAAAGATTAG+TGG + chr8_3:58891715-58891734 Msa1298180:CDS 35.0%
ATTAAGAGACAAAATGCGGT+AGG - chr8_3:58891763-58891782 None:intergenic 35.0%
GTGGTTGAGATTCTAGTAAG+AGG - chr8_3:58889538-58889557 None:intergenic 40.0%
TTTGGAGAGTGAAGAATGAG+TGG - chr8_3:58889557-58889576 None:intergenic 40.0%
AAAGAGGTTGTTGCTGTGAT+GGG - chr8_3:58889581-58889600 None:intergenic 40.0%
TAAAGAGGTTGTTGCTGTGA+TGG - chr8_3:58889582-58889601 None:intergenic 40.0%
AAAGGAGAGAGGGAGAATAA+AGG - chr8_3:58889631-58889650 None:intergenic 40.0%
CACCTGAGAATATCTCTGTT+GGG + chr8_3:58889701-58889720 Msa1298180:CDS 40.0%
!!! TGGTTTTGTGGATCCTAGAT+GGG + chr8_3:58889777-58889796 Msa1298180:CDS 40.0%
CTTGGGATTTGATGCAGTTT+AGG + chr8_3:58889809-58889828 Msa1298180:CDS 40.0%
GGAAAAATGGTACCACTGAT+TGG + chr8_3:58889830-58889849 Msa1298180:CDS 40.0%
AATAACAGCATCCCAATCAG+TGG - chr8_3:58889845-58889864 None:intergenic 40.0%
TAAGTGGTACTGTGGTAGTA+AGG + chr8_3:58890055-58890074 Msa1298180:intron 40.0%
TGGTAGTAAGGTTTCACCTA+TGG + chr8_3:58890067-58890086 Msa1298180:intron 40.0%
! TCCCTGAAGAATTAGTCTAG+TGG + chr8_3:58890176-58890195 Msa1298180:intron 40.0%
GACCACTAGACTAATTCTTC+AGG - chr8_3:58890181-58890200 None:intergenic 40.0%
! GAAGAATTAGTCTAGTGGTC+TGG + chr8_3:58890181-58890200 Msa1298180:intron 40.0%
! ATTACCCACATAGTGGGAAA+AGG + chr8_3:58890296-58890315 Msa1298180:intron 40.0%
! CTATTTGGCTGTATTGACGT+TGG - chr8_3:58890464-58890483 None:intergenic 40.0%
ATACAGCCAAATAGTTACCG+AGG + chr8_3:58890470-58890489 Msa1298180:intron 40.0%
TTGAGTCCTCGGTAACTATT+TGG - chr8_3:58890479-58890498 None:intergenic 40.0%
ATAGTTACCGAGGACTCAAT+AGG + chr8_3:58890480-58890499 Msa1298180:intron 40.0%
AAAGCAGTGTGTTTCATGGT+CGG - chr8_3:58890525-58890544 None:intergenic 40.0%
TGAAGAAGAGGTGAAAGATC+TGG + chr8_3:58890551-58890570 Msa1298180:intron 40.0%
!! GAAAGATCTGGTTTGTTGAG+TGG + chr8_3:58890563-58890582 Msa1298180:intron 40.0%
TTTGTTGAGTGGGAAGGATA+TGG + chr8_3:58890574-58890593 Msa1298180:intron 40.0%
GTGGGAAGGATATGGTAAAA+TGG + chr8_3:58890582-58890601 Msa1298180:intron 40.0%
! GCTCTTGATTTTTGCAAAGC+AGG - chr8_3:58890687-58890706 None:intergenic 40.0%
GCAGAAGAAACAAATTGGCA+AGG - chr8_3:58890788-58890807 None:intergenic 40.0%
!! TGTTTCTTCTGCATTTTGGC+AGG + chr8_3:58890796-58890815 Msa1298180:intron 40.0%
!! GTTTCTTCTGCATTTTGGCA+GGG + chr8_3:58890797-58890816 Msa1298180:intron 40.0%
TACATGGAAAGACATGGTTG+TGG + chr8_3:58890826-58890845 Msa1298180:intron 40.0%
! GGGTGATTCTCTTTTACAGT+TGG + chr8_3:58891097-58891116 Msa1298180:intron 40.0%
! TCCTTCTTGCCTCTGAAAAT+GGG - chr8_3:58891232-58891251 None:intergenic 40.0%
TGTCATTGCTGGATGATTCT+GGG - chr8_3:58891274-58891293 None:intergenic 40.0%
TTGTCATTGCTGGATGATTC+TGG - chr8_3:58891275-58891294 None:intergenic 40.0%
CCATTAAGTAGTTCAGCTTC+AGG - chr8_3:58891359-58891378 None:intergenic 40.0%
CCTGAAGCTGAACTACTTAA+TGG + chr8_3:58891356-58891375 Msa1298180:CDS 40.0%
TGCATGATACCCAAGAAGAA+AGG - chr8_3:58891463-58891482 None:intergenic 40.0%
TTTCTTCTTGGGTATCATGC+AGG + chr8_3:58891462-58891481 Msa1298180:intron 40.0%
ACTTCTCATCAGGAAGAATG+AGG + chr8_3:58891608-58891627 Msa1298180:CDS 40.0%
GTGAAGTGAACTAGTGAGGT+GGG - chr8_3:58889307-58889326 None:intergenic 45.0%
TGAGGTGAAGTGAACTAGTG+AGG - chr8_3:58889311-58889330 None:intergenic 45.0%
GTACTTGTGCCCATTCTCAA+AGG + chr8_3:58889341-58889360 Msa1298180:five_prime_UTR 45.0%
GAGATAGAAGTGAGAGAGAG+AGG + chr8_3:58889366-58889385 Msa1298180:five_prime_UTR 45.0%
AAGAGGTTGTTGCTGTGATG+GGG - chr8_3:58889580-58889599 None:intergenic 45.0%
GTCTGAGAGTGAGAGTAAAG+AGG - chr8_3:58889597-58889616 None:intergenic 45.0%
GAGAGAGGGAGAATAAAGGA+AGG - chr8_3:58889627-58889646 None:intergenic 45.0%
TGAAGCTCTCAAAGGAGAGA+GGG - chr8_3:58889641-58889660 None:intergenic 45.0%
ACAGAGATATTCTCAGGTGG+TGG - chr8_3:58889700-58889719 None:intergenic 45.0%
CCAACAGAGATATTCTCAGG+TGG - chr8_3:58889703-58889722 None:intergenic 45.0%
CCACCTGAGAATATCTCTGT+TGG + chr8_3:58889700-58889719 Msa1298180:CDS 45.0%
GTCCCAACAGAGATATTCTC+AGG - chr8_3:58889706-58889725 None:intergenic 45.0%
GAGGAGGTTAAGGTTTCTAC+TGG + chr8_3:58889757-58889776 Msa1298180:CDS 45.0%
!!! CTGGTTTTGTGGATCCTAGA+TGG + chr8_3:58889776-58889795 Msa1298180:CDS 45.0%
TGGGATGCTGTTATTGATGC+TGG + chr8_3:58889850-58889869 Msa1298180:CDS 45.0%
! ATTAGTCTAGTGGTCTGGGT+TGG + chr8_3:58890186-58890205 Msa1298180:intron 45.0%
! CATGCCTTTTCCCACTATGT+GGG - chr8_3:58890303-58890322 None:intergenic 45.0%
AAGCACCTTGGACTCATCAA+TGG + chr8_3:58890356-58890375 Msa1298180:intron 45.0%
! TTCCTTCTTCTGGGAAATGC+CGG + chr8_3:58890382-58890401 Msa1298180:intron 45.0%
CACTAATGCATCAACCACAC+CGG - chr8_3:58890404-58890423 None:intergenic 45.0%
TATTGACGTTGGACTTTCCC+TGG - chr8_3:58890453-58890472 None:intergenic 45.0%
CCAAACACCTATTGAGTCCT+CGG - chr8_3:58890490-58890509 None:intergenic 45.0%
!! ATCTGGTTTGTTGAGTGGGA+AGG + chr8_3:58890568-58890587 Msa1298180:intron 45.0%
!! AAAAGCACAGGGGTTTTAGC+TGG + chr8_3:58890658-58890677 Msa1298180:intron 45.0%
TCAAGAGCCCTATAGCTTCT+CGG + chr8_3:58890699-58890718 Msa1298180:intron 45.0%
!! TTTGGCAGGGTGGTTTTACA+TGG + chr8_3:58890810-58890829 Msa1298180:intron 45.0%
! GCGGCTACTAGTTTAGTAGA+CGG + chr8_3:58890945-58890964 Msa1298180:intron 45.0%
! TTGGTCCTTCCCATTTTCAG+AGG + chr8_3:58891220-58891239 Msa1298180:intron 45.0%
! TCTTGCCTCTGAAAATGGGA+AGG - chr8_3:58891228-58891247 None:intergenic 45.0%
! TCCCATTTTCAGAGGCAAGA+AGG + chr8_3:58891228-58891247 Msa1298180:intron 45.0%
! CTCCTTCTTGCCTCTGAAAA+TGG - chr8_3:58891233-58891252 None:intergenic 45.0%
CAGAGGCAAGAAGGAGAAAA+TGG + chr8_3:58891237-58891256 Msa1298180:intron 45.0%
CACTACAGGATTGTCATTGC+TGG - chr8_3:58891285-58891304 None:intergenic 45.0%
!! ATGGAGGTGTCAAACACTAC+AGG - chr8_3:58891299-58891318 None:intergenic 45.0%
TTGACACCTCCATTGTACCT+TGG + chr8_3:58891306-58891325 Msa1298180:CDS 45.0%
TATCTGGTCGATAGCTTGAC+AGG + chr8_3:58891516-58891535 Msa1298180:CDS 45.0%
AACTCTTCTCTTCGTAGCAG+TGG + chr8_3:58891578-58891597 Msa1298180:CDS 45.0%
ACTCTTCTCTTCGTAGCAGT+GGG + chr8_3:58891579-58891598 Msa1298180:CDS 45.0%
ACAAGCAATGGCAAGCAACT+TGG + chr8_3:58891676-58891695 Msa1298180:CDS 45.0%
GGTGAAGTGAACTAGTGAGG+TGG - chr8_3:58889308-58889327 None:intergenic 50.0%
! GTTGTTGCTGTGATGGGGTT+TGG - chr8_3:58889575-58889594 None:intergenic 50.0%
CTGAAGCTCTCAAAGGAGAG+AGG - chr8_3:58889642-58889661 None:intergenic 50.0%
! TCTCCTTTGAGAGCTTCAGC+TGG + chr8_3:58889643-58889662 Msa1298180:CDS 50.0%
GTTCCAGCTGAAGCTCTCAA+AGG - chr8_3:58889649-58889668 None:intergenic 50.0%
TTCTGCTGTTCCTGTTGCTG+AGG + chr8_3:58889738-58889757 Msa1298180:CDS 50.0%
TCCTGTTGCTGAGGAGGTTA+AGG + chr8_3:58889747-58889766 Msa1298180:CDS 50.0%
ACCTTAACCTCCTCAGCAAC+AGG - chr8_3:58889751-58889770 None:intergenic 50.0%
!! TGGATCCTAGATGGGTTGCT+GGG + chr8_3:58889785-58889804 Msa1298180:CDS 50.0%
!! TAGATGGGTTGCTGGGACTT+GGG + chr8_3:58889792-58889811 Msa1298180:CDS 50.0%
! CTGGGTTGGAACTCTGAAGA+AGG + chr8_3:58890200-58890219 Msa1298180:intron 50.0%
! CCATGCCTTTTCCCACTATG+TGG - chr8_3:58890304-58890323 None:intergenic 50.0%
! CCACATAGTGGGAAAAGGCA+TGG + chr8_3:58890301-58890320 Msa1298180:intron 50.0%
TTACTGCTGGCATGTGTTCC+AGG + chr8_3:58890432-58890451 Msa1298180:intron 50.0%
TACTGCTGGCATGTGTTCCA+GGG + chr8_3:58890433-58890452 Msa1298180:intron 50.0%
CCGAGGACTCAATAGGTGTT+TGG + chr8_3:58890487-58890506 Msa1298180:intron 50.0%
AACGTGGCCGAGAAGCTATA+GGG - chr8_3:58890709-58890728 None:intergenic 50.0%
ATCCACCATAGCCGTGTCAA+CGG - chr8_3:58890732-58890751 None:intergenic 50.0%
!! TCTTCTGCATTTTGGCAGGG+TGG + chr8_3:58890800-58890819 Msa1298180:intron 50.0%
ACACCTCCATTGTACCTTGG+TGG + chr8_3:58891309-58891328 Msa1298180:CDS 50.0%
CACCTCCATTGTACCTTGGT+GGG + chr8_3:58891310-58891329 Msa1298180:CDS 50.0%
! CTTTTGATCCATGCCCACCA+AGG - chr8_3:58891326-58891345 None:intergenic 50.0%
! CTTGGTGGGCATGGATCAAA+AGG + chr8_3:58891324-58891343 Msa1298180:CDS 50.0%
GTAGTTCAGCTTCAGGGAGA+TGG - chr8_3:58891352-58891371 None:intergenic 50.0%
GTCGATAGCTTGACAGGAGT+AGG + chr8_3:58891522-58891541 Msa1298180:CDS 50.0%
CTCTTCTCTTCGTAGCAGTG+GGG + chr8_3:58891580-58891599 Msa1298180:CDS 50.0%
TCTTCTCTTCGTAGCAGTGG+GGG + chr8_3:58891581-58891600 Msa1298180:CDS 50.0%
TGCTGTTCCTGTTGCTGAGG+AGG + chr8_3:58889741-58889760 Msa1298180:CDS 55.0%
!! GTGGATCCTAGATGGGTTGC+TGG + chr8_3:58889784-58889803 Msa1298180:CDS 55.0%
CAAGTCCCAGCAACCCATCT+AGG - chr8_3:58889793-58889812 None:intergenic 55.0%
!! CTAGATGGGTTGCTGGGACT+TGG + chr8_3:58889791-58889810 Msa1298180:CDS 55.0%
TGTGTGCGTAGCAAGCACCT+TGG + chr8_3:58890344-58890363 Msa1298180:intron 55.0%
CACCGGCATTTCCCAGAAGA+AGG - chr8_3:58890387-58890406 None:intergenic 55.0%
! TCTTCTGGGAAATGCCGGTG+TGG + chr8_3:58890387-58890406 Msa1298180:intron 55.0%
GTGTGTTTCATGGTCGGCGT+TGG - chr8_3:58890519-58890538 None:intergenic 55.0%
GAACGTGGCCGAGAAGCTAT+AGG - chr8_3:58890710-58890729 None:intergenic 55.0%
ATAGCCGTGTCAACGGAACG+TGG - chr8_3:58890725-58890744 None:intergenic 55.0%
ACGTTCCGTTGACACGGCTA+TGG + chr8_3:58890724-58890743 Msa1298180:intron 55.0%
TTCCGTTGACACGGCTATGG+TGG + chr8_3:58890727-58890746 Msa1298180:intron 55.0%
TGCCCACCAAGGTACAATGG+AGG - chr8_3:58891315-58891334 None:intergenic 55.0%
CCATGCCCACCAAGGTACAA+TGG - chr8_3:58891318-58891337 None:intergenic 55.0%
! CCATTGTACCTTGGTGGGCA+TGG + chr8_3:58891315-58891334 Msa1298180:CDS 55.0%
CTTCTCTTCGTAGCAGTGGG+GGG + chr8_3:58891582-58891601 Msa1298180:CDS 55.0%
!! TGGGGGGAGTACTTCTCATC+AGG + chr8_3:58891598-58891617 Msa1298180:CDS 55.0%
GCAATGGCAAGCAACTTGGC+AGG + chr8_3:58891680-58891699 Msa1298180:CDS 55.0%
TCGGCCACGTTCCGTTGACA+CGG + chr8_3:58890718-58890737 Msa1298180:intron 60.0%
GCAGGTCGTGCCGCAATGAT+AGG + chr8_3:58891480-58891499 Msa1298180:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 58889293 58891959 58889293 ID=Msa1298180;Name=Msa1298180
chr8_3 mRNA 58889293 58891959 58889293 ID=Msa1298180-mRNA-1;Parent=Msa1298180;Name=Msa1298180-mRNA-1;_AED=0.17;_eAED=0.17;_QI=203|1|1|1|1|1|3|225|254
chr8_3 exon 58889293 58889871 58889293 ID=Msa1298180-mRNA-1:exon:16962;Parent=Msa1298180-mRNA-1
chr8_3 exon 58891240 58891377 58891240 ID=Msa1298180-mRNA-1:exon:16963;Parent=Msa1298180-mRNA-1
chr8_3 exon 58891484 58891959 58891484 ID=Msa1298180-mRNA-1:exon:16964;Parent=Msa1298180-mRNA-1
chr8_3 five_prime_UTR 58889293 58889495 58889293 ID=Msa1298180-mRNA-1:five_prime_utr;Parent=Msa1298180-mRNA-1
chr8_3 CDS 58889496 58889871 58889496 ID=Msa1298180-mRNA-1:cds;Parent=Msa1298180-mRNA-1
chr8_3 CDS 58891240 58891377 58891240 ID=Msa1298180-mRNA-1:cds;Parent=Msa1298180-mRNA-1
chr8_3 CDS 58891484 58891734 58891484 ID=Msa1298180-mRNA-1:cds;Parent=Msa1298180-mRNA-1
chr8_3 three_prime_UTR 58891735 58891959 58891735 ID=Msa1298180-mRNA-1:three_prime_utr;Parent=Msa1298180-mRNA-1
Gene Sequence

>Msa1298180

ATGTCAACAACTATGTCTATGTCTATGGCTTCTTTTTCTCCTCTTACTAGAATCTCAACCACTCATTCTTCACTCTCCAAACCCCATCACAGCAACAACCTCTTTACTCTCACTCTCAGACCAAAAAACCTTCCTTTATTCTCCCTCTCTCCTTTGAGAGCTTCAGCTGGAACTTCTGATTCAGCTGATACTGCAGTGAAACCACCACCTGAGAATATCTCTGTTGGGACAAATGGGTCTGCTTCTGCTGTTCCTGTTGCTGAGGAGGTTAAGGTTTCTACTGGTTTTGTGGATCCTAGATGGGTTGCTGGGACTTGGGATTTGATGCAGTTTAGGAAAAATGGTACCACTGATTGGGATGCTGTTATTGATGCTGAGGCAAGAAGGAGAAAATGGCTCGAGACTAACCCAGAATCATCCAGCAATGACAATCCTGTAGTGTTTGACACCTCCATTGTACCTTGGTGGGCATGGATCAAAAGGTTCCATCTCCCTGAAGCTGAACTACTTAATGGTCGTGCCGCAATGATAGGATTCTTTATGACATATCTGGTCGATAGCTTGACAGGAGTAGGTCTTGTTGACCAAATGAACAACTTCTTTTGCAAAACTCTTCTCTTCGTAGCAGTGGGGGGAGTACTTCTCATCAGGAAGAATGAGGATGTTGATACTTTTAAGAAATTATTGGAGGAGACTACATTTTATGACAAGCAATGGCAAGCAACTTGGCAGGATGAGAACTCAAGCACTTCCAAAAAAGATTAG

Protein sequence

>Msa1298180

MSTTMSMSMASFSPLTRISTTHSSLSKPHHSNNLFTLTLRPKNLPLFSLSPLRASAGTSDSADTAVKPPPENISVGTNGSASAVPVAEEVKVSTGFVDPRWVAGTWDLMQFRKNGTTDWDAVIDAEARRRKWLETNPESSSNDNPVVFDTSIVPWWAWIKRFHLPEAELLNGRAAMIGFFMTYLVDSLTGVGLVDQMNNFFCKTLLFVAVGGVLLIRKNEDVDTFKKLLEETTFYDKQWQATWQDENSSTSKKD*