Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026680 | XP_013470067.1 | 97.173 | 283 | 8 | 0 | 1 | 283 | 1 | 283 | 0.0 | 545 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026680 | sp|Q9SHU7|TIC21_ARATH | 68.077 | 260 | 70 | 2 | 27 | 283 | 47 | 296 | 2.25e-114 | 334 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026680 | A0A072W1E4 | 97.173 | 283 | 8 | 0 | 1 | 283 | 1 | 283 | 0.0 | 545 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001510 | Msa1026680 | 0.800785 | 1.224298e-48 | -8.615850e-47 |
| Msa0115410 | Msa1026680 | 0.813922 | 2.003216e-51 | -8.615850e-47 |
| Msa0655360 | Msa1026680 | 0.800081 | 1.703749e-48 | -8.615850e-47 |
| Msa0707170 | Msa1026680 | 0.812448 | 4.218303e-51 | -8.615850e-47 |
| Msa0178920 | Msa1026680 | 0.891451 | 3.924750e-74 | -8.615850e-47 |
| Msa0179200 | Msa1026680 | 0.804154 | 2.474811e-49 | -8.615850e-47 |
| Msa0380390 | Msa1026680 | 0.813610 | 2.345537e-51 | -8.615850e-47 |
| Msa1026680 | Msa1244380 | 0.812837 | 3.467388e-51 | -8.615850e-47 |
| Msa1026680 | Msa1298180 | 0.831813 | 1.348996e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026680 | MtrunA17_Chr1g0208101 | 97.173 | 283 | 8 | 0 | 1 | 283 | 1 | 283 | 0.0 | 545 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026680 | AT2G15290.1 | 68.077 | 260 | 70 | 2 | 27 | 283 | 47 | 296 | 2.29e-115 | 334 |
Find 90 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCATTCATTTCAGTGTTT+TGG | 0.190891 | 7_1:-58862230 | Msa1026680:CDS |
| GATTAGGTAGCTTAGGGTTT+TGG | 0.244550 | 7_1:-58862365 | Msa1026680:CDS |
| GGGATGGGATCTGCTATTCT+TGG | 0.261286 | 7_1:-58861814 | Msa1026680:CDS |
| CTCTGCCAACCCATATTATC+AGG | 0.265678 | 7_1:-58861746 | Msa1026680:CDS |
| GTCTACAGTTTGGACATGTT+TGG | 0.295925 | 7_1:-58860603 | Msa1026680:three_prime_UTR |
| GGAGCGATTCCCTGATAATA+TGG | 0.296780 | 7_1:+58861736 | None:intergenic |
| TGGTATAGCATTGAACCTTT+TGG | 0.302115 | 7_1:-58861836 | Msa1026680:CDS |
| TTCAAAATACTTGTTTGATA+AGG | 0.313176 | 7_1:-58860445 | Msa1026680:three_prime_UTR |
| ATGCGGAGAATTTCTATCTT+AGG | 0.316070 | 7_1:-58860421 | Msa1026680:three_prime_UTR |
| TCAAAATACTTGTTTGATAA+GGG | 0.330644 | 7_1:-58860444 | Msa1026680:three_prime_UTR |
| TTTGAGTTCTAGTTGTTTAC+GGG | 0.350642 | 7_1:+58862860 | None:intergenic |
| TCTACAGTTTGGACATGTTT+GGG | 0.351059 | 7_1:-58860602 | Msa1026680:three_prime_UTR |
| GAAGAACTGTTCAATTTAAG+AGG | 0.370176 | 7_1:+58862651 | None:intergenic |
| CAATCCTTTCTCATTTCCTT+GGG | 0.382936 | 7_1:-58860950 | Msa1026680:CDS |
| AGAAATGAAGGAACTGAAAG+AGG | 0.389344 | 7_1:+58862626 | None:intergenic |
| ACAATCCTTTCTCATTTCCT+TGG | 0.393630 | 7_1:-58860951 | Msa1026680:CDS |
| CTTACATTAGACAAGTTATG+AGG | 0.396140 | 7_1:+58860564 | None:intergenic |
| TGTGTAGGTGGCGAAGAGAT+TGG | 0.399741 | 7_1:-58862412 | Msa1026680:intron |
| TTCAAGCGATTAGGTAGCTT+AGG | 0.400195 | 7_1:-58862372 | Msa1026680:CDS |
| GCAGTTTACTGTCTACAGTT+TGG | 0.416301 | 7_1:-58860613 | Msa1026680:three_prime_UTR |
| CACTCCTTCCAACGAAGAAT+CGG | 0.416433 | 7_1:-58862544 | Msa1026680:CDS |
| CCTTCATTTCTCATCGTCAA+TGG | 0.425680 | 7_1:-58862614 | Msa1026680:CDS |
| CCTTATGCAAACTTCAGAAA+TGG | 0.431667 | 7_1:+58860870 | None:intergenic |
| GTAGTTAAAAGCTTACAAAA+TGG | 0.434722 | 7_1:-58861856 | Msa1026680:CDS |
| CTAACGCCGGCACTGTGTTC+CGG | 0.437556 | 7_1:-58862765 | Msa1026680:CDS |
| GCGAGGCATTTCAAGCGATT+AGG | 0.439777 | 7_1:-58862381 | Msa1026680:CDS |
| CCATTTCTGAAGTTTGCATA+AGG | 0.443202 | 7_1:-58860870 | Msa1026680:intron |
| TCGACCAGTGATGCAACATC+AGG | 0.443984 | 7_1:-58860493 | Msa1026680:three_prime_UTR |
| AAACCCTGATGTTGCATCAC+TGG | 0.444763 | 7_1:+58860489 | None:intergenic |
| TGCACAGATTCTTTACAACT+TGG | 0.451047 | 7_1:+58860706 | None:intergenic |
| ACTGTGTTCCGGCAGGTTCA+CGG | 0.457206 | 7_1:-58862754 | Msa1026680:CDS |
| GGGAAGACGAGGGACGGAAA+TGG | 0.461563 | 7_1:+58862710 | None:intergenic |
| AAGACATCTAATGCGAGAAC+AGG | 0.464297 | 7_1:+58861703 | None:intergenic |
| GCTGTAGCATAAAACGTTGC+CGG | 0.476279 | 7_1:+58862267 | None:intergenic |
| TCAAGCGATTAGGTAGCTTA+GGG | 0.479000 | 7_1:-58862371 | Msa1026680:CDS |
| GGATGGGATCTGCTATTCTT+GGG | 0.479726 | 7_1:-58861813 | Msa1026680:CDS |
| CGCCGGCACTGTGTTCCGGC+AGG | 0.491115 | 7_1:-58862761 | Msa1026680:CDS |
| TTTAAGACCCTCTTCGTTGG+TGG | 0.494683 | 7_1:-58860745 | Msa1026680:three_prime_UTR |
| CTTCAGCAATTCAAGATCCA+TGG | 0.505559 | 7_1:-58860652 | Msa1026680:three_prime_UTR |
| TAGAACTCAAAAGTGAGAAT+CGG | 0.509444 | 7_1:-58862848 | Msa1026680:five_prime_UTR |
| TATTATCAGGGAATCGCTCC+TGG | 0.521565 | 7_1:-58861733 | Msa1026680:CDS |
| CTTGGGATGCAAGCCACAGT+TGG | 0.527632 | 7_1:-58861796 | Msa1026680:CDS |
| TACTTGTTTGATAAGGGATG+CGG | 0.529460 | 7_1:-58860438 | Msa1026680:three_prime_UTR |
| GAAATGAAGGAACTGAAAGA+GGG | 0.531980 | 7_1:+58862627 | None:intergenic |
| AGTTGGATTCTTAGTTGCAA+AGG | 0.532071 | 7_1:-58861779 | Msa1026680:CDS |
| GTGCAAAATGTGACTCTAGC+TGG | 0.532807 | 7_1:+58860388 | None:intergenic |
| TTCAATTTAAGAGGGAGTGA+GGG | 0.544352 | 7_1:+58862660 | None:intergenic |
| GAGCGATTCCCTGATAATAT+GGG | 0.545660 | 7_1:+58861737 | None:intergenic |
| AGAAGAAGCGGTTACTGTGA+AGG | 0.546077 | 7_1:+58862584 | None:intergenic |
| GAAGCCCAAGGAAATGAGAA+AGG | 0.552017 | 7_1:+58860946 | None:intergenic |
| TAGCAGATCCCATCCCCAAA+AGG | 0.554594 | 7_1:+58861821 | None:intergenic |
| CCATTGACGATGAGAAATGA+AGG | 0.558196 | 7_1:+58862614 | None:intergenic |
| GAAGAAGCGGTTACTGTGAA+GGG | 0.558789 | 7_1:+58862585 | None:intergenic |
| GCGTAGTTGTTCGATTTCTG+TGG | 0.559647 | 7_1:+58862801 | None:intergenic |
| AACCTGCCGGAACACAGTGC+CGG | 0.562346 | 7_1:+58862759 | None:intergenic |
| CCACTGTGATAAACTGCCCA+TGG | 0.562764 | 7_1:+58860635 | None:intergenic |
| TTTAACTACATCAGATCGAG+GGG | 0.565750 | 7_1:+58861870 | None:intergenic |
| TGGCGCCGCCGTGAACCTGC+CGG | 0.569949 | 7_1:+58862746 | None:intergenic |
| CTGATAATATGGGTTGGCAG+AGG | 0.570282 | 7_1:+58861747 | None:intergenic |
| TGCAGAGGATTGAGAAGAAG+CGG | 0.571740 | 7_1:+58862572 | None:intergenic |
| AAGAACTGTTCAATTTAAGA+GGG | 0.578373 | 7_1:+58862652 | None:intergenic |
| AGAATTGTTCGGGGAAGACG+AGG | 0.581441 | 7_1:+58862699 | None:intergenic |
| TTCAGCAATTCAAGATCCAT+GGG | 0.582907 | 7_1:-58860651 | Msa1026680:three_prime_UTR |
| CGACCAGTGATGCAACATCA+GGG | 0.587764 | 7_1:-58860492 | Msa1026680:three_prime_UTR |
| GTTCAATTTAAGAGGGAGTG+AGG | 0.594846 | 7_1:+58862659 | None:intergenic |
| ATGTCAACCACCAACGAAGA+GGG | 0.598818 | 7_1:+58860738 | None:intergenic |
| TGTTCGGGGAAGACGAGGGA+CGG | 0.600639 | 7_1:+58862704 | None:intergenic |
| GCTATATTCGCCTCTCTGAG+AGG | 0.604639 | 7_1:-58862200 | Msa1026680:CDS |
| TTACATTAGACAAGTTATGA+GGG | 0.612322 | 7_1:+58860565 | None:intergenic |
| GAAATGGCTGAGATTGAGAG+TGG | 0.616067 | 7_1:+58862726 | None:intergenic |
| GCGAGAACAGGACTTGAACC+AGG | 0.619241 | 7_1:+58861715 | None:intergenic |
| GGAAGGAGTGAAAGCTGCAG+AGG | 0.633093 | 7_1:+58862557 | None:intergenic |
| TCAATTTAAGAGGGAGTGAG+GGG | 0.636040 | 7_1:+58862661 | None:intergenic |
| GATTCCCTGATAATATGGGT+TGG | 0.640688 | 7_1:+58861741 | None:intergenic |
| CCAACGAGAAAAGAAGCCCA+AGG | 0.641472 | 7_1:+58860934 | None:intergenic |
| AGAAATGGAAGAGCTTCTGA+CGG | 0.648983 | 7_1:+58860885 | None:intergenic |
| TCTGCCAACCCATATTATCA+GGG | 0.650984 | 7_1:-58861745 | Msa1026680:CDS |
| GATGTCAACCACCAACGAAG+AGG | 0.656315 | 7_1:+58860737 | None:intergenic |
| TACCGGAAAAGTGACATCGC+CGG | 0.662744 | 7_1:-58862286 | Msa1026680:CDS |
| AGAGAGGCGAATATAGCCAA+AGG | 0.665331 | 7_1:+58862206 | None:intergenic |
| GAATTGTTCGGGGAAGACGA+GGG | 0.667717 | 7_1:+58862700 | None:intergenic |
| TGCAACTAAGAATCCAACTG+TGG | 0.672275 | 7_1:+58861783 | None:intergenic |
| AATGGAAGAGCTTCTGACGG+CGG | 0.675113 | 7_1:+58860888 | None:intergenic |
| AACTGCAAATGATCCTACCA+AGG | 0.682014 | 7_1:-58862169 | Msa1026680:intron |
| TTCTACGAAGCCTCTCAGAG+AGG | 0.714642 | 7_1:+58862190 | None:intergenic |
| AATGCAAACTCTTCTAACGC+CGG | 0.716376 | 7_1:-58862778 | Msa1026680:CDS |
| TTAACTACATCAGATCGAGG+GGG | 0.724482 | 7_1:+58861871 | None:intergenic |
| AGAGATTGGAGAAAACTGCG+AGG | 0.729408 | 7_1:-58862398 | Msa1026680:CDS |
| CCATGGGCAGTTTATCACAG+TGG | 0.733786 | 7_1:-58860635 | Msa1026680:three_prime_UTR |
| GTGTTCCGGCAGGTTCACGG+CGG | 0.766983 | 7_1:-58862751 | Msa1026680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTGTTAAATAAGAAATT+AGG | - | chr7_1:58861854-58861873 | Msa1026680:CDS | 10.0% |
| !! | AATTGTTAAATAAGAAATTA+GGG | - | chr7_1:58861855-58861874 | Msa1026680:CDS | 10.0% |
| !!! | TCAATTTTTTTTAATAGAAA+TGG | - | chr7_1:58862054-58862073 | Msa1026680:intron | 10.0% |
| !! | TTAGTTATTATTTACAATGT+TGG | - | chr7_1:58861354-58861373 | Msa1026680:intron | 15.0% |
| !! | ATTGTTAAATAAGAAATTAG+GGG | - | chr7_1:58861856-58861875 | Msa1026680:CDS | 15.0% |
| !!! | ATAATTTCAAAATTGCATTT+TGG | + | chr7_1:58862754-58862773 | None:intergenic | 15.0% |
| !! | TGAAATTGAATTCAATTTCT+AGG | - | chr7_1:58860808-58860827 | Msa1026680:intron | 20.0% |
| !! | GAAATTGAATTCAATTTCTA+GGG | - | chr7_1:58860809-58860828 | Msa1026680:intron | 20.0% |
| !!! | ATGAATAATTGAATTTGCTT+AGG | - | chr7_1:58861153-58861172 | Msa1026680:intron | 20.0% |
| !!! | TTAAGTTGTTTATCTAAACA+TGG | + | chr7_1:58861223-58861242 | None:intergenic | 20.0% |
| !! | ATTAACATTATTAGCAAAGA+AGG | + | chr7_1:58861716-58861735 | None:intergenic | 20.0% |
| !! | AATATTATTCTTTCCTTTAC+AGG | - | chr7_1:58862290-58862309 | Msa1026680:CDS | 20.0% |
| !! | TTCAAAATACTTGTTTGATA+AGG | - | chr7_1:58862830-58862849 | Msa1026680:five_prime_UTR | 20.0% |
| !! | TCAAAATACTTGTTTGATAA+GGG | - | chr7_1:58862831-58862850 | Msa1026680:five_prime_UTR | 20.0% |
| ! | AAAAGCCCAAAAATAAAACT+GGG | - | chr7_1:58860391-58860410 | Msa1026680:three_prime_UTR | 25.0% |
| !!! | TTTTGAGTTCTAGTTGTTTA+CGG | + | chr7_1:58860419-58860438 | None:intergenic | 25.0% |
| !! | AATTTTGCTTCAGAATTGTT+CGG | + | chr7_1:58860590-58860609 | None:intergenic | 25.0% |
| ! | AAGAACTGTTCAATTTAAGA+GGG | + | chr7_1:58860626-58860645 | None:intergenic | 25.0% |
| ! | TGTTAATTGTTCTAACTGTT+TGG | - | chr7_1:58861186-58861205 | Msa1026680:intron | 25.0% |
| ! | ACAACTTAATTAAACGCTTA+TGG | - | chr7_1:58861234-58861253 | Msa1026680:intron | 25.0% |
| ! | GTAGTTAAAAGCTTACAAAA+TGG | - | chr7_1:58861419-58861438 | Msa1026680:intron | 25.0% |
| ! | TATAAAATTGCCTTCAATAG+AGG | - | chr7_1:58861627-58861646 | Msa1026680:intron | 25.0% |
| !!! | TAAACGTTTTAATCATCCAA+TGG | - | chr7_1:58861737-58861756 | Msa1026680:CDS | 25.0% |
| ! | CAATGGTAAACTATGTATAA+GGG | - | chr7_1:58861754-58861773 | Msa1026680:CDS | 25.0% |
| ! | TTTAAACAAACTATCGACAA+TGG | + | chr7_1:58861836-58861855 | None:intergenic | 25.0% |
| !! | ATGATTAGACTGTTGTTATT+TGG | - | chr7_1:58861880-58861899 | Msa1026680:intron | 25.0% |
| !!! | TGATTAGACTGTTGTTATTT+GGG | - | chr7_1:58861881-58861900 | Msa1026680:intron | 25.0% |
| !! | TTTTGTTGAATCATGAAACT+AGG | - | chr7_1:58862106-58862125 | Msa1026680:intron | 25.0% |
| ! | TAGGAAATAGAACAAAAACT+AGG | - | chr7_1:58862125-58862144 | Msa1026680:intron | 25.0% |
| ! | TTACATTAGACAAGTTATGA+GGG | + | chr7_1:58862713-58862732 | None:intergenic | 25.0% |
| GAAAAGCCCAAAAATAAAAC+TGG | - | chr7_1:58860390-58860409 | Msa1026680:three_prime_UTR | 30.0% | |
| ! | TTTGAGTTCTAGTTGTTTAC+GGG | + | chr7_1:58860418-58860437 | None:intergenic | 30.0% |
| TAGAACTCAAAAGTGAGAAT+CGG | - | chr7_1:58860427-58860446 | Msa1026680:three_prime_UTR | 30.0% | |
| ! | ATTTTGCTTCAGAATTGTTC+GGG | + | chr7_1:58860589-58860608 | None:intergenic | 30.0% |
| GAAGAACTGTTCAATTTAAG+AGG | + | chr7_1:58860627-58860646 | None:intergenic | 30.0% | |
| ! | TGACAATGTTGTTATTGTGT+AGG | - | chr7_1:58860848-58860867 | Msa1026680:intron | 30.0% |
| TGAACTAAAAACAAGTACCT+TGG | + | chr7_1:58861126-58861145 | None:intergenic | 30.0% | |
| TCAAATGAACCAATTCAAAC+AGG | - | chr7_1:58861290-58861309 | Msa1026680:intron | 30.0% | |
| CAAACAGTGATTTCACATTA+AGG | + | chr7_1:58861316-58861335 | None:intergenic | 30.0% | |
| !! | TTTTAACTACATCAGATCGA+GGG | + | chr7_1:58861409-58861428 | None:intergenic | 30.0% |
| ACTGAAATTTCCTCTATTGA+AGG | + | chr7_1:58861640-58861659 | None:intergenic | 30.0% | |
| CCTTATACATAGTTTACCAT+TGG | + | chr7_1:58861756-58861775 | None:intergenic | 30.0% | |
| CCAATGGTAAACTATGTATA+AGG | - | chr7_1:58861753-58861772 | Msa1026680:CDS | 30.0% | |
| !! | GATTAGACTGTTGTTATTTG+GGG | - | chr7_1:58861882-58861901 | Msa1026680:intron | 30.0% |
| !! | ATTAGACTGTTGTTATTTGG+GGG | - | chr7_1:58861883-58861902 | Msa1026680:intron | 30.0% |
| TGTTGGAAGGTTTGTATTAT+GGG | + | chr7_1:58861972-58861991 | None:intergenic | 30.0% | |
| TTGTTGGAAGGTTTGTATTA+TGG | + | chr7_1:58861973-58861992 | None:intergenic | 30.0% | |
| AATACAAACCTTCCAACAAA+AGG | - | chr7_1:58861974-58861993 | Msa1026680:intron | 30.0% | |
| CTTCCAACAAAAGGAAAAAT+CGG | - | chr7_1:58861983-58862002 | Msa1026680:intron | 30.0% | |
| TCATGATTCAACAAAAGCAA+TGG | + | chr7_1:58862102-58862121 | None:intergenic | 30.0% | |
| GTGAGTAACATTAATTGTGT+TGG | - | chr7_1:58862224-58862243 | Msa1026680:CDS | 30.0% | |
| ATTGTGTTGGATAGAATCTA+TGG | - | chr7_1:58862237-58862256 | Msa1026680:CDS | 30.0% | |
| AAGTCTGGTAGAAAGAATTT+AGG | - | chr7_1:58862436-58862455 | Msa1026680:intron | 30.0% | |
| CTTACATTAGACAAGTTATG+AGG | + | chr7_1:58862714-58862733 | None:intergenic | 30.0% | |
| ! | TTTTGCTTCAGAATTGTTCG+GGG | + | chr7_1:58860588-58860607 | None:intergenic | 35.0% |
| TTCAATTTAAGAGGGAGTGA+GGG | + | chr7_1:58860618-58860637 | None:intergenic | 35.0% | |
| GAAATGAAGGAACTGAAAGA+GGG | + | chr7_1:58860651-58860670 | None:intergenic | 35.0% | |
| AGAAATGAAGGAACTGAAAG+AGG | + | chr7_1:58860652-58860671 | None:intergenic | 35.0% | |
| ! | CAATGTTGTTATTGTGTAGG+TGG | - | chr7_1:58860851-58860870 | Msa1026680:intron | 35.0% |
| ! | ATTAGGTAGCTTAGGGTTTT+GGG | - | chr7_1:58860911-58860930 | Msa1026680:CDS | 35.0% |
| ! | CTGCATTCATTTCAGTGTTT+TGG | - | chr7_1:58861045-58861064 | Msa1026680:intron | 35.0% |
| !!! | ATTTCAGTGTTTTGGTCCTT+TGG | - | chr7_1:58861053-58861072 | Msa1026680:intron | 35.0% |
| CTAAAAACAAGTACCTTGGT+AGG | + | chr7_1:58861122-58861141 | None:intergenic | 35.0% | |
| ACATTAAGGCCTGTTTGAAT+TGG | + | chr7_1:58861302-58861321 | None:intergenic | 35.0% | |
| TTTAACTACATCAGATCGAG+GGG | + | chr7_1:58861408-58861427 | None:intergenic | 35.0% | |
| !! | CTTTTAACTACATCAGATCG+AGG | + | chr7_1:58861410-58861429 | None:intergenic | 35.0% |
| !! | TGGTATAGCATTGAACCTTT+TGG | - | chr7_1:58861439-58861458 | Msa1026680:intron | 35.0% |
| !! | GGTATAGCATTGAACCTTTT+GGG | - | chr7_1:58861440-58861459 | Msa1026680:intron | 35.0% |
| !! | GTATAGCATTGAACCTTTTG+GGG | - | chr7_1:58861441-58861460 | Msa1026680:intron | 35.0% |
| AGTTGGATTCTTAGTTGCAA+AGG | - | chr7_1:58861496-58861515 | Msa1026680:intron | 35.0% | |
| ! | TCTCGCATTAGATGTCTTTT+TGG | - | chr7_1:58861577-58861596 | Msa1026680:intron | 35.0% |
| !! | ATTAGATGTCTTTTTGGTGC+AGG | - | chr7_1:58861583-58861602 | Msa1026680:intron | 35.0% |
| TTGGTGCAGGTAAAACTTAT+TGG | - | chr7_1:58861596-58861615 | Msa1026680:intron | 35.0% | |
| AGGTCAAATTTGCAAAACAC+AGG | + | chr7_1:58861696-58861715 | None:intergenic | 35.0% | |
| ! | ACTCCATCTGTATTGTTTTC+TGG | - | chr7_1:58861802-58861821 | Msa1026680:CDS | 35.0% |
| ATGCCAGAAAACAATACAGA+TGG | + | chr7_1:58861808-58861827 | None:intergenic | 35.0% | |
| ! | CGATTTTTCCTTTTGTTGGA+AGG | + | chr7_1:58861985-58862004 | None:intergenic | 35.0% |
| !!! | ACACCGATTTTTCCTTTTGT+TGG | + | chr7_1:58861989-58862008 | None:intergenic | 35.0% |
| !! | ACTCACATTAGTTTGTTGCT+TGG | + | chr7_1:58862210-58862229 | None:intergenic | 35.0% |
| ATTCTTTCCTTTACAGGCTT+CGG | - | chr7_1:58862296-58862315 | Msa1026680:CDS | 35.0% | |
| ACAATCCTTTCTCATTTCCT+TGG | - | chr7_1:58862324-58862343 | Msa1026680:CDS | 35.0% | |
| CAATCCTTTCTCATTTCCTT+GGG | - | chr7_1:58862325-58862344 | Msa1026680:CDS | 35.0% | |
| CCTTATGCAAACTTCAGAAA+TGG | + | chr7_1:58862408-58862427 | None:intergenic | 35.0% | |
| !! | CCATTTCTGAAGTTTGCATA+AGG | - | chr7_1:58862405-58862424 | Msa1026680:CDS | 35.0% |
| AATTCTTTCTACCAGACTTG+AGG | + | chr7_1:58862435-58862454 | None:intergenic | 35.0% | |
| !!! | GAAATGAGGGTACACTTTTT+TGG | + | chr7_1:58862464-58862483 | None:intergenic | 35.0% |
| AAAACAACCACTGGAAATGA+GGG | + | chr7_1:58862477-58862496 | None:intergenic | 35.0% | |
| TGCACAGATTCTTTACAACT+TGG | + | chr7_1:58862572-58862591 | None:intergenic | 35.0% | |
| TTCAGCAATTCAAGATCCAT+GGG | - | chr7_1:58862624-58862643 | Msa1026680:CDS | 35.0% | |
| TCTACAGTTTGGACATGTTT+GGG | - | chr7_1:58862673-58862692 | Msa1026680:CDS | 35.0% | |
| TACTTGTTTGATAAGGGATG+CGG | - | chr7_1:58862837-58862856 | Msa1026680:five_prime_UTR | 35.0% | |
| ATGCGGAGAATTTCTATCTT+AGG | - | chr7_1:58862854-58862873 | Msa1026680:five_prime_UTR | 35.0% | |
| !!! | CGGGTCCCAGTTTTATTTTT+GGG | + | chr7_1:58860399-58860418 | None:intergenic | 40.0% |
| !!! | ACGGGTCCCAGTTTTATTTT+TGG | + | chr7_1:58860400-58860419 | None:intergenic | 40.0% |
| AATGCAAACTCTTCTAACGC+CGG | - | chr7_1:58860497-58860516 | Msa1026680:three_prime_UTR | 40.0% | |
| TCAATTTAAGAGGGAGTGAG+GGG | + | chr7_1:58860617-58860636 | None:intergenic | 40.0% | |
| GTTCAATTTAAGAGGGAGTG+AGG | + | chr7_1:58860619-58860638 | None:intergenic | 40.0% | |
| CCATTGACGATGAGAAATGA+AGG | + | chr7_1:58860664-58860683 | None:intergenic | 40.0% | |
| CCTTCATTTCTCATCGTCAA+TGG | - | chr7_1:58860661-58860680 | Msa1026680:three_prime_UTR | 40.0% | |
| ! | TTTTCCGATTCTTCGTTGGA+AGG | + | chr7_1:58860738-58860757 | None:intergenic | 40.0% |
| !!! | TGCTTTTTCCGATTCTTCGT+TGG | + | chr7_1:58860742-58860761 | None:intergenic | 40.0% |
| GGAAAAAGCAAAACTCGATC+AGG | - | chr7_1:58860752-58860771 | Msa1026680:intron | 40.0% | |
| TTCAAGCGATTAGGTAGCTT+AGG | - | chr7_1:58860903-58860922 | Msa1026680:CDS | 40.0% | |
| TCAAGCGATTAGGTAGCTTA+GGG | - | chr7_1:58860904-58860923 | Msa1026680:CDS | 40.0% | |
| ! | GATTAGGTAGCTTAGGGTTT+TGG | - | chr7_1:58860910-58860929 | Msa1026680:CDS | 40.0% |
| ! | TTAGGTAGCTTAGGGTTTTG+GGG | - | chr7_1:58860912-58860931 | Msa1026680:CDS | 40.0% |
| !! | TCGTTTTCCGTTGTTGTTAC+CGG | - | chr7_1:58860972-58860991 | Msa1026680:intron | 40.0% |
| ! | CACTTTTCCGGTAACAACAA+CGG | + | chr7_1:58860982-58861001 | None:intergenic | 40.0% |
| AACTGCAAATGATCCTACCA+AGG | - | chr7_1:58861106-58861125 | Msa1026680:intron | 40.0% | |
| TTAACTACATCAGATCGAGG+GGG | + | chr7_1:58861407-58861426 | None:intergenic | 40.0% | |
| TGCAACTAAGAATCCAACTG+TGG | + | chr7_1:58861495-58861514 | None:intergenic | 40.0% | |
| TCTGCCAACCCATATTATCA+GGG | - | chr7_1:58861530-58861549 | Msa1026680:intron | 40.0% | |
| GATTCCCTGATAATATGGGT+TGG | + | chr7_1:58861537-58861556 | None:intergenic | 40.0% | |
| GAGCGATTCCCTGATAATAT+GGG | + | chr7_1:58861541-58861560 | None:intergenic | 40.0% | |
| AAGACATCTAATGCGAGAAC+AGG | + | chr7_1:58861575-58861594 | None:intergenic | 40.0% | |
| !! | AGGGCATCATTTTCCTATTC+TGG | - | chr7_1:58861773-58861792 | Msa1026680:CDS | 40.0% |
| ATGGAGTTGTTCTCCAGAAT+AGG | + | chr7_1:58861789-58861808 | None:intergenic | 40.0% | |
| AGAAATGGAAGAGCTTCTGA+CGG | + | chr7_1:58862393-58862412 | None:intergenic | 40.0% | |
| GAAAACAACCACTGGAAATG+AGG | + | chr7_1:58862478-58862497 | None:intergenic | 40.0% | |
| !! | TCCAGTGGTTGTTTTCTTCA+TGG | - | chr7_1:58862482-58862501 | Msa1026680:intron | 40.0% |
| TCCATGAAGAAAACAACCAC+TGG | + | chr7_1:58862486-58862505 | None:intergenic | 40.0% | |
| !!! | CTTTTTAAGACCCTCTTCGT+TGG | - | chr7_1:58862527-58862546 | Msa1026680:CDS | 40.0% |
| CTTCAGCAATTCAAGATCCA+TGG | - | chr7_1:58862623-58862642 | Msa1026680:CDS | 40.0% | |
| GCAGTTTACTGTCTACAGTT+TGG | - | chr7_1:58862662-58862681 | Msa1026680:CDS | 40.0% | |
| GTCTACAGTTTGGACATGTT+TGG | - | chr7_1:58862672-58862691 | Msa1026680:CDS | 40.0% | |
| GCGTAGTTGTTCGATTTCTG+TGG | + | chr7_1:58860477-58860496 | None:intergenic | 45.0% | |
| GAAATGGCTGAGATTGAGAG+TGG | + | chr7_1:58860552-58860571 | None:intergenic | 45.0% | |
| GAAGAAGCGGTTACTGTGAA+GGG | + | chr7_1:58860693-58860712 | None:intergenic | 45.0% | |
| AGAAGAAGCGGTTACTGTGA+AGG | + | chr7_1:58860694-58860713 | None:intergenic | 45.0% | |
| TGCAGAGGATTGAGAAGAAG+CGG | + | chr7_1:58860706-58860725 | None:intergenic | 45.0% | |
| CACTCCTTCCAACGAAGAAT+CGG | - | chr7_1:58860731-58860750 | Msa1026680:three_prime_UTR | 45.0% | |
| AGAGATTGGAGAAAACTGCG+AGG | - | chr7_1:58860877-58860896 | Msa1026680:CDS | 45.0% | |
| GCTGTAGCATAAAACGTTGC+CGG | + | chr7_1:58861011-58861030 | None:intergenic | 45.0% | |
| ! | GCAACGTTTTATGCTACAGC+TGG | - | chr7_1:58861011-58861030 | Msa1026680:intron | 45.0% |
| ! | ACGTTTTATGCTACAGCTGG+TGG | - | chr7_1:58861014-58861033 | Msa1026680:intron | 45.0% |
| AGAGAGGCGAATATAGCCAA+AGG | + | chr7_1:58861072-58861091 | None:intergenic | 45.0% | |
| GTTGGTTGAGCCTTTAGTTG+TGG | - | chr7_1:58861372-58861391 | Msa1026680:intron | 45.0% | |
| GAGCCTTTAGTTGTGGTTTC+AGG | - | chr7_1:58861379-58861398 | Msa1026680:intron | 45.0% | |
| GTGCCTGAAACCACAACTAA+AGG | + | chr7_1:58861385-58861404 | None:intergenic | 45.0% | |
| !! | AGCATTGAACCTTTTGGGGA+TGG | - | chr7_1:58861445-58861464 | Msa1026680:intron | 45.0% |
| !! | GCATTGAACCTTTTGGGGAT+GGG | - | chr7_1:58861446-58861465 | Msa1026680:intron | 45.0% |
| GGATGGGATCTGCTATTCTT+GGG | - | chr7_1:58861462-58861481 | Msa1026680:intron | 45.0% | |
| !! | CTGATAATATGGGTTGGCAG+AGG | + | chr7_1:58861531-58861550 | None:intergenic | 45.0% |
| CTCTGCCAACCCATATTATC+AGG | - | chr7_1:58861529-58861548 | Msa1026680:intron | 45.0% | |
| GGAGCGATTCCCTGATAATA+TGG | + | chr7_1:58861542-58861561 | None:intergenic | 45.0% | |
| TATTATCAGGGAATCGCTCC+TGG | - | chr7_1:58861542-58861561 | Msa1026680:intron | 45.0% | |
| ! | TGTTATTTGGGGGTGAAGTG+TGG | - | chr7_1:58861893-58861912 | Msa1026680:intron | 45.0% |
| !! | TAGAATCTATGGTGCCACTG+TGG | - | chr7_1:58862248-58862267 | Msa1026680:CDS | 45.0% |
| TTACTTGAAGCCTACCACAG+TGG | + | chr7_1:58862265-58862284 | None:intergenic | 45.0% | |
| GAAGCCCAAGGAAATGAGAA+AGG | + | chr7_1:58862332-58862351 | None:intergenic | 45.0% | |
| CATAAGGTATGCCTCAAGTC+TGG | - | chr7_1:58862421-58862440 | Msa1026680:intron | 45.0% | |
| AAGTGTACCCTCATTTCCAG+TGG | - | chr7_1:58862467-58862486 | Msa1026680:intron | 45.0% | |
| ! | TTTAAGACCCTCTTCGTTGG+TGG | - | chr7_1:58862530-58862549 | Msa1026680:CDS | 45.0% |
| ATGTCAACCACCAACGAAGA+GGG | + | chr7_1:58862540-58862559 | None:intergenic | 45.0% | |
| AAACCCTGATGTTGCATCAC+TGG | + | chr7_1:58862789-58862808 | None:intergenic | 45.0% | |
| GAATTGTTCGGGGAAGACGA+GGG | + | chr7_1:58860578-58860597 | None:intergenic | 50.0% | |
| AGAATTGTTCGGGGAAGACG+AGG | + | chr7_1:58860579-58860598 | None:intergenic | 50.0% | |
| TGTGTAGGTGGCGAAGAGAT+TGG | - | chr7_1:58860863-58860882 | Msa1026680:intron | 50.0% | |
| ! | GCGAGGCATTTCAAGCGATT+AGG | - | chr7_1:58860894-58860913 | Msa1026680:CDS | 50.0% |
| TACCGGAAAAGTGACATCGC+CGG | - | chr7_1:58860989-58861008 | Msa1026680:intron | 50.0% | |
| GCTATATTCGCCTCTCTGAG+AGG | - | chr7_1:58861075-58861094 | Msa1026680:intron | 50.0% | |
| TTCTACGAAGCCTCTCAGAG+AGG | + | chr7_1:58861088-58861107 | None:intergenic | 50.0% | |
| TAGCAGATCCCATCCCCAAA+AGG | + | chr7_1:58861457-58861476 | None:intergenic | 50.0% | |
| GGGATGGGATCTGCTATTCT+TGG | - | chr7_1:58861461-58861480 | Msa1026680:intron | 50.0% | |
| TTTGGGGGTGAAGTGTGGAT+TGG | - | chr7_1:58861898-58861917 | Msa1026680:intron | 50.0% | |
| !! | ATCTATGGTGCCACTGTGGT+AGG | - | chr7_1:58862252-58862271 | Msa1026680:CDS | 50.0% |
| GTGTTTGCCGAAGCCTGTAA+AGG | + | chr7_1:58862306-58862325 | None:intergenic | 50.0% | |
| CCAACGAGAAAAGAAGCCCA+AGG | + | chr7_1:58862344-58862363 | None:intergenic | 50.0% | |
| ! | CCTTGGGCTTCTTTTCTCGT+TGG | - | chr7_1:58862341-58862360 | Msa1026680:CDS | 50.0% |
| AATGGAAGAGCTTCTGACGG+CGG | + | chr7_1:58862390-58862409 | None:intergenic | 50.0% | |
| GATGTCAACCACCAACGAAG+AGG | + | chr7_1:58862541-58862560 | None:intergenic | 50.0% | |
| CCACTGTGATAAACTGCCCA+TGG | + | chr7_1:58862643-58862662 | None:intergenic | 50.0% | |
| CCATGGGCAGTTTATCACAG+TGG | - | chr7_1:58862640-58862659 | Msa1026680:CDS | 50.0% | |
| TCGACCAGTGATGCAACATC+AGG | - | chr7_1:58862782-58862801 | Msa1026680:exon | 50.0% | |
| CGACCAGTGATGCAACATCA+GGG | - | chr7_1:58862783-58862802 | Msa1026680:exon | 50.0% | |
| ACTGTGTTCCGGCAGGTTCA+CGG | - | chr7_1:58860521-58860540 | Msa1026680:intron | 55.0% | |
| GGAAGGAGTGAAAGCTGCAG+AGG | + | chr7_1:58860721-58860740 | None:intergenic | 55.0% | |
| !!! | TGCCGGCGATGTCACTTTTC+CGG | + | chr7_1:58860994-58861013 | None:intergenic | 55.0% |
| CTTGGGATGCAAGCCACAGT+TGG | - | chr7_1:58861479-58861498 | Msa1026680:intron | 55.0% | |
| GCGAGAACAGGACTTGAACC+AGG | + | chr7_1:58861563-58861582 | None:intergenic | 55.0% | |
| CTAACGCCGGCACTGTGTTC+CGG | - | chr7_1:58860510-58860529 | Msa1026680:intron | 60.0% | |
| AACCTGCCGGAACACAGTGC+CGG | + | chr7_1:58860519-58860538 | None:intergenic | 60.0% | |
| GGGAAGACGAGGGACGGAAA+TGG | + | chr7_1:58860568-58860587 | None:intergenic | 60.0% | |
| TGTTCGGGGAAGACGAGGGA+CGG | + | chr7_1:58860574-58860593 | None:intergenic | 60.0% | |
| !! | GGGGGTGAAGTGTGGATTGG+TGG | - | chr7_1:58861901-58861920 | Msa1026680:intron | 60.0% |
| GTGTTCCGGCAGGTTCACGG+CGG | - | chr7_1:58860524-58860543 | Msa1026680:intron | 65.0% | |
| CGCCGGCACTGTGTTCCGGC+AGG | - | chr7_1:58860514-58860533 | Msa1026680:intron | 75.0% | |
| TGGCGCCGCCGTGAACCTGC+CGG | + | chr7_1:58860532-58860551 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 58860390 | 58862907 | 58860390 | ID=Msa1026680;Name=Msa1026680 |
| chr7_1 | mRNA | 58860390 | 58862907 | 58860390 | ID=Msa1026680-mRNA-1;Parent=Msa1026680;Name=Msa1026680-mRNA-1;_AED=0.09;_eAED=0.09;_QI=108|1|1|1|0.6|0.5|6|341|283 |
| chr7_1 | exon | 58860390 | 58860527 | 58860390 | ID=Msa1026680-mRNA-1:exon:11757;Parent=Msa1026680-mRNA-1 |
| chr7_1 | exon | 58860569 | 58860770 | 58860569 | ID=Msa1026680-mRNA-1:exon:11756;Parent=Msa1026680-mRNA-1 |
| chr7_1 | exon | 58860871 | 58860985 | 58860871 | ID=Msa1026680-mRNA-1:exon:11755;Parent=Msa1026680-mRNA-1 |
| chr7_1 | exon | 58861693 | 58861896 | 58861693 | ID=Msa1026680-mRNA-1:exon:11754;Parent=Msa1026680-mRNA-1 |
| chr7_1 | exon | 58862170 | 58862427 | 58862170 | ID=Msa1026680-mRNA-1:exon:11753;Parent=Msa1026680-mRNA-1 |
| chr7_1 | exon | 58862524 | 58862907 | 58862524 | ID=Msa1026680-mRNA-1:exon:11752;Parent=Msa1026680-mRNA-1 |
| chr7_1 | five_prime_UTR | 58862800 | 58862907 | 58862800 | ID=Msa1026680-mRNA-1:five_prime_utr;Parent=Msa1026680-mRNA-1 |
| chr7_1 | CDS | 58862524 | 58862799 | 58862524 | ID=Msa1026680-mRNA-1:cds;Parent=Msa1026680-mRNA-1 |
| chr7_1 | CDS | 58862170 | 58862427 | 58862170 | ID=Msa1026680-mRNA-1:cds;Parent=Msa1026680-mRNA-1 |
| chr7_1 | CDS | 58861693 | 58861896 | 58861693 | ID=Msa1026680-mRNA-1:cds;Parent=Msa1026680-mRNA-1 |
| chr7_1 | CDS | 58860872 | 58860985 | 58860872 | ID=Msa1026680-mRNA-1:cds;Parent=Msa1026680-mRNA-1 |
| chr7_1 | three_prime_UTR | 58860871 | 58860871 | 58860871 | ID=Msa1026680-mRNA-1:three_prime_utr;Parent=Msa1026680-mRNA-1 |
| chr7_1 | three_prime_UTR | 58860569 | 58860770 | 58860569 | ID=Msa1026680-mRNA-1:three_prime_utr;Parent=Msa1026680-mRNA-1 |
| chr7_1 | three_prime_UTR | 58860390 | 58860527 | 58860390 | ID=Msa1026680-mRNA-1:three_prime_utr;Parent=Msa1026680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
