AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0179120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0179120 MtrunA17_Chr1g0207551 97.534 811 18 1 81 889 1 811 0.0 1669
Msa0179120 MtrunA17_Chr3g0080351 49.465 841 376 9 70 889 32 844 0.0 796
Msa0179120 MtrunA17_Chr2g0329031 49.424 694 326 8 108 791 8 686 0.0 678
Msa0179120 MtrunA17_Chr5g0448761 36.505 641 390 8 102 726 48 687 2.11e-143 444
Msa0179120 MtrunA17_Chr1g0202341 34.281 633 401 6 112 732 49 678 9.25e-125 392
Msa0179120 MtrunA17_Chr2g0291581 34.554 628 383 11 107 720 63 676 7.54e-121 382
Msa0179120 MtrunA17_Chr5g0441581 34.548 631 386 7 112 733 30 642 1.89e-118 376
Msa0179120 MtrunA17_Chr2g0296781 35.524 563 349 6 118 671 1 558 4.33e-115 368
Msa0179120 MtrunA17_Chr5g0440451 32.308 650 392 12 113 730 42 675 1.36e-111 364
Msa0179120 MtrunA17_Chr6g0477261 40.094 424 246 3 255 671 25 447 2.50e-105 340
Msa0179120 MtrunA17_Chr1g0196541 34.095 569 349 8 118 671 1 558 2.09e-104 340
Msa0179120 MtrunA17_Chr3g0118611 37.194 449 276 3 285 729 118 564 7.01e-101 332
Msa0179120 MtrunA17_Chr2g0291591 34.195 503 325 4 113 613 63 561 1.57e-97 317
Msa0179120 MtrunA17_Chr5g0448511 34.009 444 287 2 284 721 11 454 8.46e-95 308
Msa0179120 MtrunA17_Chr2g0287061 34.744 567 327 9 106 669 175 701 1.37e-94 315
Msa0179120 MtrunA17_Chr3g0082121 31.331 616 394 13 107 709 36 635 7.28e-92 305
Msa0179120 MtrunA17_Chr8g0363841 31.127 559 368 7 122 669 25 577 5.46e-90 300
Msa0179120 MtrunA17_Chr1g0203721 28.031 635 443 6 117 738 66 699 4.61e-83 286
Msa0179120 MtrunA17_Chr2g0324011 27.768 569 400 6 109 670 5 569 4.18e-82 276
Msa0179120 MtrunA17_Chr6g0458391 29.401 568 378 5 107 670 218 766 9.69e-81 276
Msa0179120 MtrunA17_Chr2g0287651 28.803 618 415 11 118 722 79 684 1.11e-80 279
Msa0179120 MtrunA17_Chr2g0276841 30.756 569 366 13 114 666 70 626 5.18e-73 254
Msa0179120 MtrunA17_Chr1g0203051 28.772 570 362 16 109 656 74 621 1.62e-68 240
Msa0179120 MtrunA17_Chr1g0198761 29.340 576 373 14 117 670 50 613 1.41e-67 240
Msa0179120 MtrunA17_Chr2g0294841 27.018 607 421 11 73 664 4 603 6.06e-60 218
Msa0179120 MtrunA17_Chr2g0290391 26.917 587 376 16 114 670 51 614 4.22e-58 212
Msa0179120 MtrunA17_Chr1g0164591 29.870 308 206 4 198 504 10 308 2.18e-47 172
Msa0179120 MtrunA17_Chr5g0431001 28.221 489 311 13 54 520 10 480 1.53e-46 174
Msa0179120 MtrunA17_Chr7g0258861 27.431 288 200 5 109 389 5 290 9.50e-33 129
Msa0179120 MtrunA17_Chr2g0308841 26.400 250 156 4 445 679 1 237 2.11e-19 89.4
Msa0179120 MtrunA17_Chr7g0233911 38.053 113 66 2 113 222 33 144 2.67e-16 79.0
Msa0179120 MtrunA17_Chr3g0078041 37.383 107 60 2 113 214 49 153 3.99e-16 78.6
Msa0179120 MtrunA17_Chr4g0033611 29.630 135 91 2 83 216 48 179 4.36e-14 73.2
Msa0179120 MtrunA17_Chr2g0329361 31.250 112 72 2 108 214 54 165 9.02e-12 66.2
Msa0179120 MtrunA17_Chr4g0075451 24.771 218 141 8 209 423 6 203 9.85e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0179120 AT4G15090.1 66.710 778 252 4 102 876 39 812 0.0 1089
Msa0179120 AT4G15090.5 66.710 778 252 4 102 876 39 812 0.0 1089
Msa0179120 AT4G15090.3 66.710 778 252 4 102 876 39 812 0.0 1089
Msa0179120 AT4G15090.2 66.710 778 252 4 102 876 39 812 0.0 1089
Msa0179120 AT4G15090.4 66.710 778 252 4 102 876 39 812 0.0 1089
Msa0179120 AT3G22170.2 49.690 807 359 9 103 889 60 839 0.0 802
Msa0179120 AT3G22170.1 49.690 807 359 9 103 889 60 839 0.0 802
Msa0179120 AT1G76320.1 46.479 639 330 4 118 752 1 631 0.0 624
Msa0179120 AT1G76320.4 46.479 639 330 4 118 752 1 631 0.0 624
Msa0179120 AT1G76320.2 46.479 639 330 4 118 752 1 631 0.0 624
Msa0179120 AT1G76320.3 46.479 639 330 4 118 752 1 631 0.0 622
Msa0179120 AT4G19990.3 43.798 774 340 13 111 860 18 720 0.0 551
Msa0179120 AT4G19990.4 43.798 774 340 13 111 860 18 720 0.0 551
Msa0179120 AT4G19990.6 43.798 774 340 13 111 860 18 720 0.0 551
Msa0179120 AT4G19990.2 43.798 774 340 13 111 860 18 720 0.0 551
Msa0179120 AT4G19990.5 43.798 774 340 13 111 860 18 720 0.0 550
Msa0179120 AT4G19990.7 43.798 774 340 13 111 860 32 734 0.0 550
Msa0179120 AT2G32250.2 39.130 782 406 10 113 870 37 772 2.02e-176 531
Msa0179120 AT2G32250.4 39.130 782 406 10 113 870 37 772 2.02e-176 531
Msa0179120 AT2G32250.6 39.080 783 407 10 113 870 37 774 3.06e-176 530
Msa0179120 AT2G32250.1 39.080 783 407 10 113 870 37 774 3.06e-176 530
Msa0179120 AT2G32250.3 39.080 783 407 10 113 870 37 774 3.06e-176 530
Msa0179120 AT2G32250.5 39.323 768 397 9 113 856 37 759 4.69e-176 528
Msa0179120 AT2G32250.8 38.996 777 404 10 118 870 1 731 4.70e-175 526
Msa0179120 AT2G32250.7 38.946 778 405 10 118 870 1 733 1.54e-174 525
Msa0179120 AT4G19990.1 43.111 733 322 13 152 860 2 663 2.37e-168 506
Msa0179120 AT4G38180.1 37.778 630 379 5 111 728 70 698 9.66e-146 451
Msa0179120 AT2G27110.2 34.032 620 374 9 113 726 48 638 6.13e-117 377
Msa0179120 AT2G27110.1 34.032 620 374 9 113 726 48 638 6.13e-117 377
Msa0179120 AT1G52520.1 34.796 638 377 14 114 731 85 703 5.55e-113 362
Msa0179120 AT2G27110.3 37.190 484 285 6 248 726 24 493 5.12e-106 343
Msa0179120 AT1G80010.1 32.540 630 396 14 114 724 95 714 1.56e-105 343
Msa0179120 AT3G06250.2 34.286 560 323 8 113 670 189 705 6.85e-99 326
Msa0179120 AT3G06250.2 33.929 112 63 1 102 213 16 116 6.31e-11 67.0
Msa0179120 AT3G06250.1 34.286 560 323 8 113 670 189 705 6.85e-99 326
Msa0179120 AT3G06250.1 33.929 112 63 1 102 213 16 116 6.31e-11 67.0
Msa0179120 AT3G06250.3 34.286 560 323 8 113 670 189 705 6.85e-99 326
Msa0179120 AT3G06250.3 33.929 112 63 1 102 213 16 116 6.31e-11 67.0
Msa0179120 AT5G18960.2 33.510 567 327 9 110 670 207 729 1.95e-94 315
Msa0179120 AT5G18960.1 33.510 567 327 9 110 670 207 729 1.95e-94 315
Msa0179120 AT4G38170.1 32.911 474 291 6 289 748 21 481 3.65e-86 286
Msa0179120 AT1G10240.2 29.322 590 384 13 114 682 48 625 3.10e-71 249
Msa0179120 AT1G10240.1 29.322 590 384 13 114 682 48 625 3.10e-71 249
Msa0179120 AT5G28530.3 27.721 588 376 16 109 668 50 616 1.84e-56 207
Msa0179120 AT5G28530.2 27.721 588 376 16 109 668 50 616 1.84e-56 207
Msa0179120 AT5G28530.1 27.211 588 383 15 109 668 50 620 2.39e-56 207
Msa0179120 AT5G28530.5 26.343 577 335 21 109 668 50 553 7.92e-40 157
Msa0179120 AT5G28530.4 25.823 577 342 20 109 668 50 557 1.31e-39 156
Msa0179120 AT2G43280.1 36.975 119 66 3 109 220 17 133 1.31e-15 77.0
Msa0179120 AT4G12850.4 39.604 101 60 1 113 213 10 109 4.17e-15 73.6
Msa0179120 AT4G12850.2 39.604 101 60 1 113 213 10 109 7.75e-15 72.8
Msa0179120 AT3G59470.3 34.286 105 68 1 113 216 69 173 3.52e-14 73.9
Msa0179120 AT3G59470.1 34.286 105 68 1 113 216 69 173 3.52e-14 73.9
Msa0179120 AT3G59470.2 34.286 105 68 1 113 216 81 185 3.77e-14 73.9
Msa0179120 AT4G12850.1 39.604 101 60 1 113 213 10 109 4.63e-14 72.0
Msa0179120 AT3G07500.1 30.323 155 98 2 107 259 26 172 7.33e-14 72.0
Msa0179120 AT2G43280.2 35.354 99 55 3 129 220 2 98 7.28e-11 62.4

Find 211 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTACAGGTTCCCTAATTT+TGG 0.141551 1_4:-66541132 None:intergenic
CCGAGCCATGATGGGTATTT+TGG 0.151356 1_4:+66542168 Msa0179120:CDS
TCCTGGGAATCATTTATTTC+TGG 0.151604 1_4:+66537981 Msa0179120:CDS
ACTGTTTCACAAACTCTTTA+AGG 0.204134 1_4:-66540704 None:intergenic
AACGTTTAAGAAATATATTT+TGG 0.206444 1_4:+66540067 Msa0179120:CDS
TCGGATGCAATTGCCCTTAA+TGG 0.236596 1_4:+66541782 Msa0179120:CDS
ATTGCCCTTAATGGATATTA+TGG 0.237741 1_4:+66541791 Msa0179120:CDS
AGTTTGATGGTTTCGCTAAT+TGG 0.252792 1_4:+66539242 Msa0179120:CDS
GGACCAAAGATGCCAAAATT+AGG 0.253094 1_4:+66541120 Msa0179120:CDS
TTTGGCATCAATAAATTCTT+TGG 0.254194 1_4:-66539584 None:intergenic
CATTTCAACATACATCTTTC+GGG 0.258771 1_4:-66539863 None:intergenic
TGTCGATTGTTCGAATATAA+AGG 0.270665 1_4:+66541017 Msa0179120:CDS
GAGTACCATAATATCCATTA+AGG 0.276199 1_4:-66541796 None:intergenic
TCAAGAGTATGCCAAATCTA+TGG 0.278613 1_4:+66539519 Msa0179120:CDS
ATACCTAGAGCACGCGAATT+TGG 0.279686 1_4:-66539602 None:intergenic
ACATTTCAACATACATCTTT+CGG 0.295052 1_4:-66539864 None:intergenic
AAGAAAGCTATGCCCCTCTT+AGG 0.295788 1_4:-66539424 None:intergenic
CTGTTTCACAAACTCTTTAA+GGG 0.296391 1_4:-66540703 None:intergenic
ATATTCAGAAGAAATGAAAT+TGG 0.307598 1_4:-66542884 None:intergenic
CCTGGGAATCATTTATTTCT+GGG 0.311120 1_4:+66537982 Msa0179120:CDS
TTCCTGCTAGTTCATCAAAA+TGG 0.314122 1_4:+66539320 Msa0179120:CDS
TTGATCAGTGACTATAACTT+TGG 0.317440 1_4:-66540313 None:intergenic
GCATGTACAGTTGAACTTAA+TGG 0.318417 1_4:+66541932 Msa0179120:intron
AATTTGTCTCTTCTTTGATA+TGG 0.325090 1_4:+66542527 Msa0179120:three_prime_UTR
TATCGTCCGACAACCACTTT+TGG 0.332110 1_4:+66542325 Msa0179120:CDS
AAAATGCAATTCTTAAACTT+TGG 0.338533 1_4:-66540465 None:intergenic
TAGTGCAGTGAGTGGAAGTA+TGG 0.343019 1_4:+66539351 Msa0179120:CDS
GAAATTGCCCATTGAAATCT+AGG 0.344447 1_4:+66542721 Msa0179120:three_prime_UTR
AAAATGTTCCATTTCCCATC+TGG 0.352283 1_4:-66539715 None:intergenic
GCTAATTGGAAACTTTGTTT+TGG 0.353265 1_4:+66539256 Msa0179120:CDS
TTCTTCAATTGCTTCCTTCA+AGG 0.360322 1_4:-66540343 None:intergenic
GTAGGGTCCATTGAATTCTA+TGG 0.362242 1_4:+66542143 Msa0179120:intron
AACGACAATGGTGCAGAAAC+TGG 0.362647 1_4:+66541317 Msa0179120:CDS
GTTTGACAGAGGGCAGTATC+TGG 0.368111 1_4:+66539945 Msa0179120:CDS
CCACCTTAGATCACCTTAGA+TGG 0.373780 1_4:+66542816 Msa0179120:three_prime_UTR
GGCCGCAGCCCGGCTACAAT+TGG 0.381550 1_4:+66539296 Msa0179120:CDS
CAATGGGTTAATAAGATTCC+TGG 0.384039 1_4:+66537964 Msa0179120:CDS
ATAGGTTAATTCTTCTGAAT+AGG 0.384277 1_4:+66540727 Msa0179120:CDS
GTTGTGTTCCTCTTCTTACT+TGG 0.388273 1_4:-66541398 None:intergenic
AAAAGAGAATTGAAAGAACT+TGG 0.390296 1_4:+66542579 Msa0179120:three_prime_UTR
GGAACACAACAAAGCATTCA+TGG 0.390771 1_4:+66542189 Msa0179120:CDS
TGAACTTGACGGGTGAGAAT+TGG 0.396608 1_4:+66542773 Msa0179120:three_prime_UTR
TGATCAAGACAAAGCCTTGA+AGG 0.399103 1_4:+66540329 Msa0179120:CDS
AGAAAGCTATGCCCCTCTTA+GGG 0.402896 1_4:-66539423 None:intergenic
ATCTATAGAATAGAAGAAGT+TGG 0.403398 1_4:-66540031 None:intergenic
TATTCCCGAGGGTGAGGGTC+TGG 0.406987 1_4:-66537929 None:intergenic
CTTTGTGTCCTATCTGCTAC+AGG 0.407215 1_4:-66541146 None:intergenic
AAGAGTTTGTGAAACAGTAT+AGG 0.409635 1_4:+66540709 Msa0179120:CDS
AGTGGTGAATCCCATAGATT+TGG 0.415385 1_4:-66539530 None:intergenic
CAGAGGGCAGTATCTGGCTT+TGG 0.416018 1_4:+66539951 Msa0179120:CDS
CACTGGTTGCTTCCCCTAAG+AGG 0.417880 1_4:+66539410 Msa0179120:CDS
TATGTTCCATCTATTATGTC+TGG 0.422350 1_4:+66542958 Msa0179120:three_prime_UTR
AATGCACATCCAAGCAATAT+AGG 0.426423 1_4:-66540216 None:intergenic
GAATGAAATCTCCACATTCA+TGG 0.426693 1_4:-66537890 None:intergenic
GACCAAAGATGCCAAAATTA+GGG 0.426826 1_4:+66541121 Msa0179120:CDS
AGTCACCGCGATATAGTAGA+TGG 0.432401 1_4:+66542915 Msa0179120:three_prime_UTR
GTAATTTACCTAGATTTCAA+TGG 0.434851 1_4:-66542729 None:intergenic
TTGAACTCCATGATGATGTT+TGG 0.435488 1_4:+66540544 Msa0179120:CDS
TGATCAGTGACTATAACTTT+GGG 0.440778 1_4:-66540312 None:intergenic
AAATGTTCCATTTCCCATCT+GGG 0.441346 1_4:-66539714 None:intergenic
GAATAAAATTAGAGAGTCAA+TGG 0.441686 1_4:+66537947 Msa0179120:CDS
TTGCTGTGAAAGTGTGGATC+AGG 0.445132 1_4:-66542485 None:intergenic
TCAAAACATTGGGTCAATCA+TGG 0.447302 1_4:+66539906 Msa0179120:CDS
GTGATACCAGACATAATAGA+TGG 0.447657 1_4:-66542964 None:intergenic
TAATTTACCTAGATTTCAAT+GGG 0.448920 1_4:-66542728 None:intergenic
GTTGAAGTGTTGGGTGTAGC+TGG 0.449517 1_4:+66540873 Msa0179120:CDS
GTTCATGTAGGGAGGGCAAT+TGG 0.449744 1_4:+66542300 Msa0179120:intron
ACTCCATCTAAGGTGATCTA+AGG 0.455661 1_4:-66542819 None:intergenic
TCTATAGAATAGAAGAAGTT+GGG 0.462776 1_4:-66540030 None:intergenic
CACTCCCAACCTATATTGCT+TGG 0.465721 1_4:+66540207 Msa0179120:CDS
GGGAGATGGGCAAGTTATGC+TGG 0.466240 1_4:+66539978 Msa0179120:CDS
GCAGTATCTGGCTTTGGATG+AGG 0.466634 1_4:+66539957 Msa0179120:CDS
TCAAGATACCCTGCAGCAAA+TGG 0.469548 1_4:+66541568 Msa0179120:CDS
ACTTAAATCTCCTTCACCTT+GGG 0.470138 1_4:+66540800 Msa0179120:CDS
GTTGAAATGTCTAGACAATC+TGG 0.471543 1_4:+66539877 Msa0179120:CDS
GAAATTCCAAGTTGAAGTGT+TGG 0.475026 1_4:+66540863 Msa0179120:CDS
TACAGCAAGTGGCCGCAGCC+CGG 0.477777 1_4:+66539286 Msa0179120:CDS
AGCAACATTATAACTCTCTT+CGG 0.478706 1_4:-66541243 None:intergenic
ATGCCAAATTCGCGTGCTCT+AGG 0.479668 1_4:+66539599 Msa0179120:CDS
AGGGGCATAGCTTTCTTTGA+AGG 0.480618 1_4:+66539430 Msa0179120:CDS
GCAATATAGGTTGGGAGTGA+TGG 0.483077 1_4:-66540203 None:intergenic
ACTGGTTGCTTCCCCTAAGA+GGG 0.487153 1_4:+66539411 Msa0179120:CDS
AAATTCCAAGTTGAAGTGTT+GGG 0.488182 1_4:+66540864 Msa0179120:CDS
CTGGTGGCTGTCAAAACATT+GGG 0.488703 1_4:+66539896 Msa0179120:CDS
GTATTTCAAGCATATTCAAA+AGG 0.489011 1_4:+66540002 Msa0179120:CDS
GTCAAACTGTTCATCTGTCC+AGG 0.491245 1_4:-66540493 None:intergenic
GTGTAGCTGGATGTCAATCT+AGG 0.493252 1_4:+66540886 Msa0179120:CDS
TTCACTCATTGTACGAAGAC+CGG 0.494147 1_4:+66540568 Msa0179120:CDS
CTGGCTTTGGATGAGGGAGA+TGG 0.494760 1_4:+66539964 Msa0179120:CDS
ACTCCAACAAAAGGAGCAAA+AGG 0.494816 1_4:-66540177 None:intergenic
ATCCAATTGTAGCCGGGCTG+CGG 0.496113 1_4:-66539298 None:intergenic
ATCTATTATGTCTGGTATCA+CGG 0.498288 1_4:+66542966 Msa0179120:three_prime_UTR
CACATCCAAGCAATATAGGT+TGG 0.500060 1_4:-66540212 None:intergenic
CCCAGAAATAAATGATTCCC+AGG 0.500637 1_4:-66537982 None:intergenic
GTTTCAAATTCAATGCCGTT+AGG 0.501314 1_4:-66539472 None:intergenic
AGCAGGAATCCAATTGTAGC+CGG 0.501519 1_4:-66539305 None:intergenic
CACTTAAATCTCCTTCACCT+TGG 0.501635 1_4:+66540799 Msa0179120:CDS
AAAATTCAAAATGAACTTGA+CGG 0.502637 1_4:+66542762 Msa0179120:three_prime_UTR
CGAAAATGATATGCCAAAGC+TGG 0.503037 1_4:-66539772 None:intergenic
AGTACCATAATATCCATTAA+GGG 0.503128 1_4:-66541795 None:intergenic
TGATGGTTCACTCCAACAAA+AGG 0.509844 1_4:-66540186 None:intergenic
AGTATTGCGTTGAGTGAAGA+AGG 0.512046 1_4:+66541212 Msa0179120:CDS
GGTGAAGGAGATTTAAGTGC+AGG 0.515427 1_4:-66540795 None:intergenic
GCATCACACGGGTGGTGCAC+TGG 0.518829 1_4:+66539393 Msa0179120:CDS
TTACATGAGGTAAACTTCAA+TGG 0.519199 1_4:-66542678 None:intergenic
CAATCACCTCACAGCTTCTG+AGG 0.522696 1_4:-66542556 None:intergenic
CAGTATCTGGCTTTGGATGA+GGG 0.524524 1_4:+66539958 Msa0179120:CDS
CAAGAGTATGCCAAATCTAT+GGG 0.524696 1_4:+66539520 Msa0179120:CDS
AATAAAATTAGAGAGTCAAT+GGG 0.527662 1_4:+66537948 Msa0179120:CDS
ACATCCAAGCAATATAGGTT+GGG 0.528400 1_4:-66540211 None:intergenic
CAAAACATTGGGTCAATCAT+GGG 0.529150 1_4:+66539907 Msa0179120:CDS
TCTATGGCTCCGAGCCATGA+TGG 0.529480 1_4:+66542159 Msa0179120:CDS
GGGGCATAGCTTTCTTTGAA+GGG 0.530599 1_4:+66539431 Msa0179120:CDS
TTGTTTGGTTACTGAGGACA+TGG 0.530723 1_4:+66540265 Msa0179120:CDS
TCTTGAGCGTCGACAAGTAC+AGG 0.531111 1_4:-66541551 None:intergenic
TCAACACAGCATGCAAGGCC+TGG 0.531717 1_4:+66541983 Msa0179120:CDS
CACTTGAACAACCGCAACGT+TGG 0.534327 1_4:-66541070 None:intergenic
TGGCTTTGGATGAGGGAGAT+GGG 0.535356 1_4:+66539965 Msa0179120:CDS
AAATTCAAAATGAACTTGAC+GGG 0.536740 1_4:+66542763 Msa0179120:three_prime_UTR
AGCTTTCTTTGAAGGGGACA+CGG 0.537323 1_4:+66539438 Msa0179120:CDS
AAACACAAACCATTTGCTGC+AGG 0.538027 1_4:-66541577 None:intergenic
CTAAGGTGATCTAAGGTGGA+TGG 0.541198 1_4:-66542812 None:intergenic
AATTCCAGACCCTCACCCTC+GGG 0.543102 1_4:+66537925 Msa0179120:CDS
GAGGACATGGCTTAGAGCGA+TGG 0.543287 1_4:+66540278 Msa0179120:CDS
GAAAAGCAATGACGTACACT+TGG 0.544275 1_4:-66540372 None:intergenic
CTATGGCTCCGAGCCATGAT+GGG 0.544403 1_4:+66542160 Msa0179120:CDS
AATGTGGAGATTTCATTCCC+AGG 0.546274 1_4:+66537895 Msa0179120:CDS
CTGAAGGCTATATCCAAAAG+TGG 0.546535 1_4:-66542338 None:intergenic
CTACACCCAACACTTCAACT+TGG 0.546709 1_4:-66540869 None:intergenic
TTAGGGAACCTGTAGCAGAT+AGG 0.546715 1_4:+66541138 Msa0179120:CDS
CTCGGAGCCATAGAATTCAA+TGG 0.548526 1_4:-66542150 None:intergenic
TATATTGCTTGGATGTGCAT+TGG 0.548998 1_4:+66540218 Msa0179120:CDS
TCTGGTGGCTGTCAAAACAT+TGG 0.549465 1_4:+66539895 Msa0179120:CDS
CTCATTATATCATGAAGAGA+TGG 0.550080 1_4:+66541099 Msa0179120:CDS
GAACACAACAAAGCATTCAT+GGG 0.550109 1_4:+66542190 Msa0179120:CDS
AATGGGTTAATAAGATTCCT+GGG 0.550237 1_4:+66537965 Msa0179120:CDS
AAATTCGCGTGCTCTAGGTA+TGG 0.552712 1_4:+66539604 Msa0179120:CDS
CCTCAGTAACCAAACAAAAG+TGG 0.552907 1_4:-66540259 None:intergenic
AGTGAAACCAAACATCATCA+TGG 0.555179 1_4:-66540551 None:intergenic
CACTCAATGCATGTCTGCAA+AGG 0.555274 1_4:-66541043 None:intergenic
AAATTCCAGACCCTCACCCT+CGG 0.555888 1_4:+66537924 Msa0179120:CDS
CTATATCCAAAAGTGGTTGT+CGG 0.558538 1_4:-66542331 None:intergenic
TGTCAATCTAGGACAGAGGT+TGG 0.561454 1_4:+66540897 Msa0179120:CDS
GAACACAACTAGGAAAAGAA+AGG 0.562569 1_4:+66541412 Msa0179120:CDS
CCAAAATACCCATCATGGCT+CGG 0.565207 1_4:-66542168 None:intergenic
TCAGCAGAATGTGCAAGGAC+TGG 0.567200 1_4:+66541817 Msa0179120:CDS
GTTAATCAACACAGCATGCA+AGG 0.568293 1_4:+66541978 Msa0179120:CDS
GTAAGAAGAGGAACACAACT+AGG 0.569051 1_4:+66541402 Msa0179120:CDS
CTTCAAAACCAAGTAAGAAG+AGG 0.570332 1_4:+66541390 Msa0179120:CDS
GTGTTCCAAAATACCCATCA+TGG 0.572223 1_4:-66542173 None:intergenic
CCATCTAAGGTGATCTAAGG+TGG 0.572445 1_4:-66542816 None:intergenic
CTCAGTAACCAAACAAAAGT+GGG 0.573591 1_4:-66540258 None:intergenic
TTTCAAGCATATTCAAAAGG+AGG 0.574379 1_4:+66540005 Msa0179120:CDS
CTCTTCATGATATAATGAGA+TGG 0.574857 1_4:-66541095 None:intergenic
GCAGGAATCCAATTGTAGCC+GGG 0.576667 1_4:-66539304 None:intergenic
GTAAATAACTCTAACGACAA+TGG 0.578738 1_4:+66541305 Msa0179120:CDS
GGGCATAGCTTTCTTTGAAG+GGG 0.579841 1_4:+66539432 Msa0179120:CDS
GGACACAAAGGATACAAACT+AGG 0.580462 1_4:+66541159 Msa0179120:CDS
AGGACATGGCTTAGAGCGAT+GGG 0.585225 1_4:+66540279 Msa0179120:CDS
GAACTGTTGCTGTGAAAGTG+TGG 0.585833 1_4:-66542491 None:intergenic
GGTGCAGAAACTGGCAACAA+TGG 0.585898 1_4:+66541326 Msa0179120:CDS
TCAAATTCAATGCCGTTAGG+TGG 0.590422 1_4:-66539469 None:intergenic
CACACATCATTATAACGTTG+AGG 0.592933 1_4:-66541182 None:intergenic
TCTAGGACAGAGGTTGGAGA+TGG 0.594905 1_4:+66540903 Msa0179120:CDS
AAAGTGGGTACCGACGTACA+TGG 0.600111 1_4:+66540593 Msa0179120:CDS
GCTAGTTCATCAAAATGGAA+TGG 0.603258 1_4:+66539325 Msa0179120:CDS
AACACAAACCATTTGCTGCA+GGG 0.603531 1_4:-66541576 None:intergenic
GAAAGCTATGCCCCTCTTAG+GGG 0.607330 1_4:-66539422 None:intergenic
CTGACAAAGTGACAAGGCAT+AGG 0.608799 1_4:-66543004 None:intergenic
GGTACTCAGCAGAATGTGCA+AGG 0.609447 1_4:+66541812 Msa0179120:CDS
CGAGTTATCAGTTTGACAGA+GGG 0.612110 1_4:+66539935 Msa0179120:CDS
AAGTGGGTACCGACGTACAT+GGG 0.612237 1_4:+66540594 Msa0179120:CDS
TTAATGGAGCCACCTCATGA+TGG 0.620785 1_4:+66541948 Msa0179120:CDS
AACAGTTTGACATGAGATGG+TGG 0.621739 1_4:+66540505 Msa0179120:CDS
AAACTGCATCATTAAAGCTG+AGG 0.622221 1_4:-66540116 None:intergenic
CTGGTTGCTTCCCCTAAGAG+GGG 0.625137 1_4:+66539412 Msa0179120:CDS
GGAGTAACACCTGAGTCTGA+TGG 0.629153 1_4:+66539625 Msa0179120:CDS
AAAAGCAATGACGTACACTT+GGG 0.629160 1_4:-66540371 None:intergenic
ACTGTCGGAACGTTGAGGTG+TGG 0.629360 1_4:-66540640 None:intergenic
CTGCTCCTACCATCAGACTC+AGG 0.632022 1_4:-66539634 None:intergenic
AGTTCATCAAAATGGAATGG+TGG 0.634115 1_4:+66539328 Msa0179120:CDS
AAAGAAAGAGTTCACACTGT+CGG 0.634665 1_4:-66540655 None:intergenic
ACAACAAAGCATTCATGGGA+TGG 0.635224 1_4:+66542194 Msa0179120:CDS
CATGGCTTAGAGCGATGGGA+GGG 0.635529 1_4:+66540283 Msa0179120:CDS
TCTTCTGAATAGGTATGATG+AGG 0.638772 1_4:+66540737 Msa0179120:CDS
TTGAGTGTTCTCCAACGTTG+CGG 0.639483 1_4:+66541059 Msa0179120:CDS
AGTGCAGTGAGTGGAAGTAT+GGG 0.641203 1_4:+66539352 Msa0179120:CDS
GTCAATGAAGAGCATCACAC+GGG 0.641639 1_4:+66539382 Msa0179120:CDS
ATGAACAGTTTGACATGAGA+TGG 0.648940 1_4:+66540502 Msa0179120:CDS
TGGATGTCAATCTAGGACAG+AGG 0.649330 1_4:+66540893 Msa0179120:CDS
ACATGGCTTAGAGCGATGGG+AGG 0.651552 1_4:+66540282 Msa0179120:CDS
AATGGTGGTAGTGCAGTGAG+TGG 0.652328 1_4:+66539343 Msa0179120:CDS
TATAGTTCAAGATTACGAGA+AGG 0.655112 1_4:+66540941 Msa0179120:CDS
TTCACACTGTCGGAACGTTG+AGG 0.659741 1_4:-66540645 None:intergenic
CTATTCTATAGATTTAAACG+AGG 0.660746 1_4:+66540041 Msa0179120:CDS
ACATAGTAACCATCATGAGG+TGG 0.662349 1_4:-66541957 None:intergenic
ACGAGTTATCAGTTTGACAG+AGG 0.665307 1_4:+66539934 Msa0179120:CDS
TGTCAATGAAGAGCATCACA+CGG 0.667976 1_4:+66539381 Msa0179120:CDS
AATGAAGAGCATCACACGGG+TGG 0.670295 1_4:+66539385 Msa0179120:CDS
TAACACCTGAGTCTGATGGT+AGG 0.675623 1_4:+66539629 Msa0179120:CDS
AAATACAGGAAGGTTACATG+AGG 0.676957 1_4:-66542691 None:intergenic
CTGTAGCAGATAGGACACAA+AGG 0.688770 1_4:+66541147 Msa0179120:CDS
TTAACATAGTAACCATCATG+AGG 0.693243 1_4:-66541960 None:intergenic
TTGGAACGAGTTGAGCTCAG+AGG 0.703393 1_4:+66540983 Msa0179120:CDS
ACAGTTTGACATGAGATGGT+GGG 0.706939 1_4:+66540506 Msa0179120:CDS
AGATTCCATCTACTATATCG+CGG 0.707268 1_4:-66542920 None:intergenic
TAGCTTCCTCAGAAGCTGTG+AGG 0.718551 1_4:+66542550 Msa0179120:three_prime_UTR
ATGGAACATAATGAATACCA+CGG 0.720170 1_4:-66542945 None:intergenic
AAGACATCTCCCATGTACGT+CGG 0.734961 1_4:-66540603 None:intergenic
GAAATGTCTAGACAATCTGG+TGG 0.763154 1_4:+66539880 Msa0179120:CDS
TAGTAGATGGAATCTCACCG+TGG 0.811751 1_4:+66542928 Msa0179120:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTAATTATTAATTATAA+AGG + chr1_4:66542054-66542073 Msa0179120:intron 0.0%
!! AAAATTTCAAAATTGAATTA+TGG - chr1_4:66538615-66538634 None:intergenic 10.0%
!! ACTAATAATTAGATAAGATT+AGG + chr1_4:66538369-66538388 Msa0179120:intron 15.0%
!! CTAATAATTAGATAAGATTA+GGG + chr1_4:66538370-66538389 Msa0179120:intron 15.0%
!! AAAAAATAAACAAAAACACA+AGG + chr1_4:66538485-66538504 Msa0179120:intron 15.0%
!! AAAAATAAACAAAAACACAA+GGG + chr1_4:66538486-66538505 Msa0179120:intron 15.0%
!! ATTATTATTACGCTTATTTA+TGG + chr1_4:66538805-66538824 Msa0179120:intron 15.0%
!! ATAATGTTAACATATACTTA+AGG - chr1_4:66539154-66539173 None:intergenic 15.0%
!!! GAACATTTTTGAATTTATAA+AGG + chr1_4:66539729-66539748 Msa0179120:CDS 15.0%
!!! AACGTTTAAGAAATATATTT+TGG + chr1_4:66540067-66540086 Msa0179120:CDS 15.0%
!!! ACGTTTAAGAAATATATTTT+GGG + chr1_4:66540068-66540087 Msa0179120:CDS 15.0%
!! AATAAAATTAGAGAGTCAAT+GGG + chr1_4:66537948-66537967 Msa0179120:CDS 20.0%
!! GAGATAAAAAATATATTCCT+GGG - chr1_4:66538066-66538085 None:intergenic 20.0%
!! TATGCGATAATTATAGAAAT+TGG - chr1_4:66538273-66538292 None:intergenic 20.0%
!! AAAATGCAATTCTTAAACTT+TGG - chr1_4:66540468-66540487 None:intergenic 20.0%
!! TTAGATTATACAAATAAGCA+TGG + chr1_4:66541625-66541644 Msa0179120:intron 20.0%
!!! TGCTTAATAGATTGTAATTT+TGG + chr1_4:66541901-66541920 Msa0179120:intron 20.0%
!! AGAAGATTATATTCATGATT+AGG - chr1_4:66542017-66542036 None:intergenic 20.0%
!! TACTTTCCTATGAAATTATT+GGG + chr1_4:66542222-66542241 Msa0179120:intron 20.0%
!! TAATTTCCCAATAATTTCAT+AGG - chr1_4:66542231-66542250 None:intergenic 20.0%
!! CAATTTCTATGTAAAAATAC+AGG - chr1_4:66542708-66542727 None:intergenic 20.0%
!! TAATTTACCTAGATTTCAAT+GGG - chr1_4:66542731-66542750 None:intergenic 20.0%
!! AAAATTCAAAATGAACTTGA+CGG + chr1_4:66542762-66542781 Msa0179120:three_prime_UTR 20.0%
!! ATATTCAGAAGAAATGAAAT+TGG - chr1_4:66542887-66542906 None:intergenic 20.0%
! GAATAAAATTAGAGAGTCAA+TGG + chr1_4:66537947-66537966 Msa0179120:CDS 25.0%
! AAATACGATATTCCTATGTT+TGG - chr1_4:66538031-66538050 None:intergenic 25.0%
! AAATATATTCCTGGGAATAA+GGG - chr1_4:66538058-66538077 None:intergenic 25.0%
! AAAATATATTCCTGGGAATA+AGG - chr1_4:66538059-66538078 None:intergenic 25.0%
! GGAGATAAAAAATATATTCC+TGG - chr1_4:66538067-66538086 None:intergenic 25.0%
!!! AATCTCCAACTTGTATTTTT+TGG + chr1_4:66538246-66538265 Msa0179120:intron 25.0%
! ACAACAAAATTAGTAGTAAC+AGG + chr1_4:66538509-66538528 Msa0179120:intron 25.0%
! AATTGAATTATGGATGAGAT+CGG - chr1_4:66538605-66538624 None:intergenic 25.0%
! TGAAGATAATTGTAGCATAA+AGG + chr1_4:66538887-66538906 Msa0179120:intron 25.0%
!! TTTTAATGACTAGAGTTTGA+TGG + chr1_4:66539229-66539248 Msa0179120:intron 25.0%
! TTTGGCATCAATAAATTCTT+TGG - chr1_4:66539587-66539606 None:intergenic 25.0%
! ACATTTCAACATACATCTTT+CGG - chr1_4:66539867-66539886 None:intergenic 25.0%
! GTATTTCAAGCATATTCAAA+AGG + chr1_4:66540002-66540021 Msa0179120:CDS 25.0%
! TCTATAGAATAGAAGAAGTT+GGG - chr1_4:66540033-66540052 None:intergenic 25.0%
! ATCTATAGAATAGAAGAAGT+TGG - chr1_4:66540034-66540053 None:intergenic 25.0%
! CTATTCTATAGATTTAAACG+AGG + chr1_4:66540041-66540060 Msa0179120:CDS 25.0%
! ATAGGTTAATTCTTCTGAAT+AGG + chr1_4:66540727-66540746 Msa0179120:CDS 25.0%
!! TTTCTAGCATTTAAAAGATC+AGG + chr1_4:66541484-66541503 Msa0179120:intron 25.0%
! AGTACCATAATATCCATTAA+GGG - chr1_4:66541798-66541817 None:intergenic 25.0%
! AGAACATTGTAATCATTTGA+TGG - chr1_4:66541859-66541878 None:intergenic 25.0%
! ATTGATATTCATATCGTTGT+AGG + chr1_4:66542125-66542144 Msa0179120:intron 25.0%
! TTGATATTCATATCGTTGTA+GGG + chr1_4:66542126-66542145 Msa0179120:intron 25.0%
! GTACTTTCCTATGAAATTAT+TGG + chr1_4:66542221-66542240 Msa0179120:intron 25.0%
! TACTTATTAGCATTTGAACT+TGG + chr1_4:66542392-66542411 Msa0179120:intron 25.0%
!! TGAATAGAATAATTTGTGCT+TGG + chr1_4:66542420-66542439 Msa0179120:intron 25.0%
! AATTTGTCTCTTCTTTGATA+TGG + chr1_4:66542527-66542546 Msa0179120:three_prime_UTR 25.0%
! AAAAGAGAATTGAAAGAACT+TGG + chr1_4:66542579-66542598 Msa0179120:three_prime_UTR 25.0%
! TTCTATGTAAAAATACAGGA+AGG - chr1_4:66542704-66542723 None:intergenic 25.0%
! GTAATTTACCTAGATTTCAA+TGG - chr1_4:66542732-66542751 None:intergenic 25.0%
! AAATTCAAAATGAACTTGAC+GGG + chr1_4:66542763-66542782 Msa0179120:three_prime_UTR 25.0%
!! AATGGGTTAATAAGATTCCT+GGG + chr1_4:66537965-66537984 Msa0179120:CDS 30.0%
TATTCCTATGTTTGGTAGAA+GGG - chr1_4:66538023-66538042 None:intergenic 30.0%
ATATTCCTATGTTTGGTAGA+AGG - chr1_4:66538024-66538043 None:intergenic 30.0%
TATTTAATTCCCTTATTCCC+AGG + chr1_4:66538046-66538065 Msa0179120:intron 30.0%
TGTTTCTTTCACATCCTATA+GGG - chr1_4:66538102-66538121 None:intergenic 30.0%
! TTGTTTCTTTCACATCCTAT+AGG - chr1_4:66538103-66538122 None:intergenic 30.0%
! CAAGTTGGAGATTAAATGTA+GGG - chr1_4:66538239-66538258 None:intergenic 30.0%
! ACAAGTTGGAGATTAAATGT+AGG - chr1_4:66538240-66538259 None:intergenic 30.0%
TTGGTCCAAAAAATACAAGT+TGG - chr1_4:66538254-66538273 None:intergenic 30.0%
AGATAAGATTAGGGAAAGAA+AGG + chr1_4:66538379-66538398 Msa0179120:intron 30.0%
!!! AGCTAGGGTTTTGAAAATTT+GGG - chr1_4:66538640-66538659 None:intergenic 30.0%
!!! AAGCTAGGGTTTTGAAAATT+TGG - chr1_4:66538641-66538660 None:intergenic 30.0%
AAAGAAGAAACCTTAAAGAG+CGG - chr1_4:66538737-66538756 None:intergenic 30.0%
TTACGCTTATTTATGGTTTG+TGG + chr1_4:66538812-66538831 Msa0179120:intron 30.0%
AACGTGAATTATGAATGTAG+AGG + chr1_4:66539006-66539025 Msa0179120:intron 30.0%
TTCTAACTGTTTCCAAACAT+GGG - chr1_4:66539075-66539094 None:intergenic 30.0%
ATTCTAACTGTTTCCAAACA+TGG - chr1_4:66539076-66539095 None:intergenic 30.0%
!!! ATGCACTCTTATTTTTTGTC+TGG + chr1_4:66539187-66539206 Msa0179120:intron 30.0%
!! GCTAATTGGAAACTTTGTTT+TGG + chr1_4:66539256-66539275 Msa0179120:CDS 30.0%
CATTTCAACATACATCTTTC+GGG - chr1_4:66539866-66539885 None:intergenic 30.0%
TTTCAAGCATATTCAAAAGG+AGG + chr1_4:66540005-66540024 Msa0179120:CDS 30.0%
!!! CTTATCGTTGCTTTTTATGT+AGG - chr1_4:66540154-66540173 None:intergenic 30.0%
TGATCAGTGACTATAACTTT+GGG - chr1_4:66540315-66540334 None:intergenic 30.0%
TTGATCAGTGACTATAACTT+TGG - chr1_4:66540316-66540335 None:intergenic 30.0%
! CTTTTCTCTTTGTCACATAT+TGG + chr1_4:66540389-66540408 Msa0179120:CDS 30.0%
! ATCACAAAAGACAGATTTTC+AGG - chr1_4:66540423-66540442 None:intergenic 30.0%
!!! AGAATTGCATTTTTAAGTCC+TGG + chr1_4:66540475-66540494 Msa0179120:CDS 30.0%
CTGTTTCACAAACTCTTTAA+GGG - chr1_4:66540706-66540725 None:intergenic 30.0%
ACTGTTTCACAAACTCTTTA+AGG - chr1_4:66540707-66540726 None:intergenic 30.0%
AAGAGTTTGTGAAACAGTAT+AGG + chr1_4:66540709-66540728 Msa0179120:CDS 30.0%
! AAATTCCAAGTTGAAGTGTT+GGG + chr1_4:66540864-66540883 Msa0179120:CDS 30.0%
TATAGTTCAAGATTACGAGA+AGG + chr1_4:66540941-66540960 Msa0179120:CDS 30.0%
!!! ATGAAGAGTTTTTGGTAACT+TGG + chr1_4:66540964-66540983 Msa0179120:CDS 30.0%
! TGTCGATTGTTCGAATATAA+AGG + chr1_4:66541017-66541036 Msa0179120:CDS 30.0%
CTCTTCATGATATAATGAGA+TGG - chr1_4:66541098-66541117 None:intergenic 30.0%
CTCATTATATCATGAAGAGA+TGG + chr1_4:66541099-66541118 Msa0179120:CDS 30.0%
AGCAACATTATAACTCTCTT+CGG - chr1_4:66541246-66541265 None:intergenic 30.0%
GTAAATAACTCTAACGACAA+TGG + chr1_4:66541305-66541324 Msa0179120:CDS 30.0%
TGATACGAGAATCACTTTAT+AGG + chr1_4:66541511-66541530 Msa0179120:intron 30.0%
CAGATCATGAATGAAAAAAG+AGG - chr1_4:66541603-66541622 None:intergenic 30.0%
ATAGAAATGCAATTCTCAAG+AGG - chr1_4:66541660-66541679 None:intergenic 30.0%
!!! CTTTTAGGATAATCTTAGCT+CGG + chr1_4:66541763-66541782 Msa0179120:intron 30.0%
! ATTGCCCTTAATGGATATTA+TGG + chr1_4:66541791-66541810 Msa0179120:CDS 30.0%
GAGTACCATAATATCCATTA+AGG - chr1_4:66541799-66541818 None:intergenic 30.0%
TTAACATAGTAACCATCATG+AGG - chr1_4:66541963-66541982 None:intergenic 30.0%
!! TGATACAAGTTTGCTAACTA+TGG + chr1_4:66542273-66542292 Msa0179120:intron 30.0%
!! GATACAAGTTTGCTAACTAT+GGG + chr1_4:66542274-66542293 Msa0179120:intron 30.0%
TTGCACATAACCTTAATTGT+AGG + chr1_4:66542457-66542476 Msa0179120:intron 30.0%
TTACATGAGGTAAACTTCAA+TGG - chr1_4:66542681-66542700 None:intergenic 30.0%
TAAAAAGTTCACTCCATCTA+AGG - chr1_4:66542832-66542851 None:intergenic 30.0%
ATGGAACATAATGAATACCA+CGG - chr1_4:66542948-66542967 None:intergenic 30.0%
TATGTTCCATCTATTATGTC+TGG + chr1_4:66542958-66542977 Msa0179120:three_prime_UTR 30.0%
ATCTATTATGTCTGGTATCA+CGG + chr1_4:66542966-66542985 Msa0179120:three_prime_UTR 30.0%
!! GTCTGGAATTTTCTATTCCT+GGG - chr1_4:66537915-66537934 None:intergenic 35.0%
! CTCTCTAATTTTATTCCCGA+GGG - chr1_4:66537943-66537962 None:intergenic 35.0%
! ACTCTCTAATTTTATTCCCG+AGG - chr1_4:66537944-66537963 None:intergenic 35.0%
!! CAATGGGTTAATAAGATTCC+TGG + chr1_4:66537964-66537983 Msa0179120:CDS 35.0%
TCCTGGGAATCATTTATTTC+TGG + chr1_4:66537981-66538000 Msa0179120:CDS 35.0%
! CCTGGGAATCATTTATTTCT+GGG + chr1_4:66537982-66538001 Msa0179120:CDS 35.0%
TTTCTTTCACATCCTATAGG+GGG - chr1_4:66538100-66538119 None:intergenic 35.0%
GTTTCTTTCACATCCTATAG+GGG - chr1_4:66538101-66538120 None:intergenic 35.0%
!!! GCTAGGGTTTTGAAAATTTG+GGG - chr1_4:66538639-66538658 None:intergenic 35.0%
CGAGTACGAAAAATATGAAG+TGG - chr1_4:66538697-66538716 None:intergenic 35.0%
GTGTGAAGAACAAAACACAA+GGG - chr1_4:66538769-66538788 None:intergenic 35.0%
AGTGTGAAGAACAAAACACA+AGG - chr1_4:66538770-66538789 None:intergenic 35.0%
! TATGGTTTGTGGTAAATGCT+TGG + chr1_4:66538823-66538842 Msa0179120:intron 35.0%
TGGAATGCTAAAACATGATG+CGG + chr1_4:66538843-66538862 Msa0179120:intron 35.0%
GTGAATTATGAATGTAGAGG+TGG + chr1_4:66539009-66539028 Msa0179120:intron 35.0%
! AGTTTGATGGTTTCGCTAAT+TGG + chr1_4:66539242-66539261 Msa0179120:CDS 35.0%
TTCCTGCTAGTTCATCAAAA+TGG + chr1_4:66539320-66539339 Msa0179120:CDS 35.0%
!! TTCCATTTTGATGAACTAGC+AGG - chr1_4:66539325-66539344 None:intergenic 35.0%
GCTAGTTCATCAAAATGGAA+TGG + chr1_4:66539325-66539344 Msa0179120:CDS 35.0%
AGTTCATCAAAATGGAATGG+TGG + chr1_4:66539328-66539347 Msa0179120:CDS 35.0%
GTTTCAAATTCAATGCCGTT+AGG - chr1_4:66539475-66539494 None:intergenic 35.0%
! TCAAGAGTATGCCAAATCTA+TGG + chr1_4:66539519-66539538 Msa0179120:CDS 35.0%
! CAAGAGTATGCCAAATCTAT+GGG + chr1_4:66539520-66539539 Msa0179120:CDS 35.0%
!!! TCTGCTGTTTTTAATGGAAG+TGG - chr1_4:66539551-66539570 None:intergenic 35.0%
!!! TGATCGTCTGCTGTTTTTAA+TGG - chr1_4:66539557-66539576 None:intergenic 35.0%
AAATGTTCCATTTCCCATCT+GGG - chr1_4:66539717-66539736 None:intergenic 35.0%
AAAATGTTCCATTTCCCATC+TGG - chr1_4:66539718-66539737 None:intergenic 35.0%
! TCATGAACTTTTACCAGCTT+TGG + chr1_4:66539759-66539778 Msa0179120:CDS 35.0%
!! CAGCTTTGGCATATCATTTT+CGG + chr1_4:66539773-66539792 Msa0179120:CDS 35.0%
! GCATATCATTTTCGGATTCA+TGG + chr1_4:66539781-66539800 Msa0179120:CDS 35.0%
GTTGAAATGTCTAGACAATC+TGG + chr1_4:66539877-66539896 Msa0179120:CDS 35.0%
TCAAAACATTGGGTCAATCA+TGG + chr1_4:66539906-66539925 Msa0179120:CDS 35.0%
CAAAACATTGGGTCAATCAT+GGG + chr1_4:66539907-66539926 Msa0179120:CDS 35.0%
AAACTGCATCATTAAAGCTG+AGG - chr1_4:66540119-66540138 None:intergenic 35.0%
ACATCCAAGCAATATAGGTT+GGG - chr1_4:66540214-66540233 None:intergenic 35.0%
AATGCACATCCAAGCAATAT+AGG - chr1_4:66540219-66540238 None:intergenic 35.0%
TATATTGCTTGGATGTGCAT+TGG + chr1_4:66540218-66540237 Msa0179120:CDS 35.0%
CTCAGTAACCAAACAAAAGT+GGG - chr1_4:66540261-66540280 None:intergenic 35.0%
TTCTTCAATTGCTTCCTTCA+AGG - chr1_4:66540346-66540365 None:intergenic 35.0%
AAAAGCAATGACGTACACTT+GGG - chr1_4:66540374-66540393 None:intergenic 35.0%
ATGAACAGTTTGACATGAGA+TGG + chr1_4:66540502-66540521 Msa0179120:CDS 35.0%
! TTGAACTCCATGATGATGTT+TGG + chr1_4:66540544-66540563 Msa0179120:CDS 35.0%
AGTGAAACCAAACATCATCA+TGG - chr1_4:66540554-66540573 None:intergenic 35.0%
AAAGAAAGAGTTCACACTGT+CGG - chr1_4:66540658-66540677 None:intergenic 35.0%
TCTTCTGAATAGGTATGATG+AGG + chr1_4:66540737-66540756 Msa0179120:CDS 35.0%
ACTTAAATCTCCTTCACCTT+GGG + chr1_4:66540800-66540819 Msa0179120:CDS 35.0%
!! ATTTGTTTTTCCCAAGGTGA+AGG - chr1_4:66540813-66540832 None:intergenic 35.0%
!! GTTGACATTTGTTTTTCCCA+AGG - chr1_4:66540819-66540838 None:intergenic 35.0%
! GAAATTCCAAGTTGAAGTGT+TGG + chr1_4:66540863-66540882 Msa0179120:CDS 35.0%
GACCAAAGATGCCAAAATTA+GGG + chr1_4:66541121-66541140 Msa0179120:CDS 35.0%
!! TTCCCTAATTTTGGCATCTT+TGG - chr1_4:66541126-66541145 None:intergenic 35.0%
CACACATCATTATAACGTTG+AGG - chr1_4:66541185-66541204 None:intergenic 35.0%
!!! CTTACTTGGTTTTGAAGCAA+GGG - chr1_4:66541387-66541406 None:intergenic 35.0%
!!! TCTTACTTGGTTTTGAAGCA+AGG - chr1_4:66541388-66541407 None:intergenic 35.0%
CTTCAAAACCAAGTAAGAAG+AGG + chr1_4:66541390-66541409 Msa0179120:CDS 35.0%
GAACACAACTAGGAAAAGAA+AGG + chr1_4:66541412-66541431 Msa0179120:CDS 35.0%
!! GCTTACGTGTTAAGTTGTTT+TGG + chr1_4:66541460-66541479 Msa0179120:intron 35.0%
AAATGCAATTCTCAAGAGGA+TGG - chr1_4:66541656-66541675 None:intergenic 35.0%
! ACATGTGCTTTCGTTCTTTT+AGG + chr1_4:66541748-66541767 Msa0179120:intron 35.0%
GCATGTACAGTTGAACTTAA+TGG + chr1_4:66541932-66541951 Msa0179120:intron 35.0%
! GAACACAACAAAGCATTCAT+GGG + chr1_4:66542190-66542209 Msa0179120:CDS 35.0%
CTATATCCAAAAGTGGTTGT+CGG - chr1_4:66542334-66542353 None:intergenic 35.0%
TAAGGTTATGTGCAAACAGA+CGG - chr1_4:66542452-66542471 None:intergenic 35.0%
AAATACAGGAAGGTTACATG+AGG - chr1_4:66542694-66542713 None:intergenic 35.0%
GAAATTGCCCATTGAAATCT+AGG + chr1_4:66542721-66542740 Msa0179120:three_prime_UTR 35.0%
! TGGATGGATGTTTTCATCAA+TGG - chr1_4:66542799-66542818 None:intergenic 35.0%
! ATTGAACCTGACCACATTTT+TGG + chr1_4:66542853-66542872 Msa0179120:three_prime_UTR 35.0%
TGGATTTCTCACCAAAAATG+TGG - chr1_4:66542867-66542886 None:intergenic 35.0%
AGATTCCATCTACTATATCG+CGG - chr1_4:66542923-66542942 None:intergenic 35.0%
GTGATACCAGACATAATAGA+TGG - chr1_4:66542967-66542986 None:intergenic 35.0%
AATGTGGAGATTTCATTCCC+AGG + chr1_4:66537895-66537914 Msa0179120:CDS 40.0%
!! GGTCTGGAATTTTCTATTCC+TGG - chr1_4:66537916-66537935 None:intergenic 40.0%
! AATTTTATTCCCGAGGGTGA+GGG - chr1_4:66537937-66537956 None:intergenic 40.0%
! TAATTTTATTCCCGAGGGTG+AGG - chr1_4:66537938-66537957 None:intergenic 40.0%
CCCAGAAATAAATGATTCCC+AGG - chr1_4:66537985-66538004 None:intergenic 40.0%
TGTTCCCTTCTACCAAACAT+AGG + chr1_4:66538016-66538035 Msa0179120:intron 40.0%
GGGCTGATTATAGTTGTGTA+GGG - chr1_4:66538219-66538238 None:intergenic 40.0%
AGGGCTGATTATAGTTGTGT+AGG - chr1_4:66538220-66538239 None:intergenic 40.0%
AGATTAGGGAAAGAAAGGCA+AGG + chr1_4:66538384-66538403 Msa0179120:intron 40.0%
GATTAGGGAAAGAAAGGCAA+GGG + chr1_4:66538385-66538404 Msa0179120:intron 40.0%
! TATTTTTCGTACTCGCTGCT+TGG + chr1_4:66538702-66538721 Msa0179120:intron 40.0%
! GCATTTTTCACCGCTCTTTA+AGG + chr1_4:66538724-66538743 Msa0179120:intron 40.0%
GAACAAAACACAAGGGAAGA+AGG - chr1_4:66538762-66538781 None:intergenic 40.0%
GGAATGCTAAAACATGATGC+GGG + chr1_4:66538844-66538863 Msa0179120:intron 40.0%
TCTGTTCAGTGTTCCTGATT+GGG + chr1_4:66539046-66539065 Msa0179120:intron 40.0%
! TTGGTGCATTTTACAGCAAG+TGG + chr1_4:66539275-66539294 Msa0179120:CDS 40.0%
!! TGTCAATGAAGAGCATCACA+CGG + chr1_4:66539381-66539400 Msa0179120:CDS 40.0%
TCAAATTCAATGCCGTTAGG+TGG - chr1_4:66539472-66539491 None:intergenic 40.0%
AGTGGTGAATCCCATAGATT+TGG - chr1_4:66539533-66539552 None:intergenic 40.0%
ACGTGAAGAAAAACCCAGAT+GGG + chr1_4:66539701-66539720 Msa0179120:CDS 40.0%
AGAAAAACCCAGATGGGAAA+TGG + chr1_4:66539707-66539726 Msa0179120:CDS 40.0%
CGAAAATGATATGCCAAAGC+TGG - chr1_4:66539775-66539794 None:intergenic 40.0%
GAAATGTCTAGACAATCTGG+TGG + chr1_4:66539880-66539899 Msa0179120:CDS 40.0%
ACGAGTTATCAGTTTGACAG+AGG + chr1_4:66539934-66539953 Msa0179120:CDS 40.0%
CGAGTTATCAGTTTGACAGA+GGG + chr1_4:66539935-66539954 Msa0179120:CDS 40.0%
! TTGCCTTTTGCTCCTTTTGT+TGG + chr1_4:66540174-66540193 Msa0179120:CDS 40.0%
ACTCCAACAAAAGGAGCAAA+AGG - chr1_4:66540180-66540199 None:intergenic 40.0%
TGATGGTTCACTCCAACAAA+AGG - chr1_4:66540189-66540208 None:intergenic 40.0%
CACATCCAAGCAATATAGGT+TGG - chr1_4:66540215-66540234 None:intergenic 40.0%
!! AGACTAAGCCCACTTTTGTT+TGG + chr1_4:66540250-66540269 Msa0179120:CDS 40.0%
CCTCAGTAACCAAACAAAAG+TGG - chr1_4:66540262-66540281 None:intergenic 40.0%
!! CCACTTTTGTTTGGTTACTG+AGG + chr1_4:66540259-66540278 Msa0179120:CDS 40.0%
TTGTTTGGTTACTGAGGACA+TGG + chr1_4:66540265-66540284 Msa0179120:CDS 40.0%
TGATCAAGACAAAGCCTTGA+AGG + chr1_4:66540329-66540348 Msa0179120:CDS 40.0%
GAAAAGCAATGACGTACACT+TGG - chr1_4:66540375-66540394 None:intergenic 40.0%
AACAGTTTGACATGAGATGG+TGG + chr1_4:66540505-66540524 Msa0179120:CDS 40.0%
ACAGTTTGACATGAGATGGT+GGG + chr1_4:66540506-66540525 Msa0179120:CDS 40.0%
TTCACTCATTGTACGAAGAC+CGG + chr1_4:66540568-66540587 Msa0179120:CDS 40.0%
!! ATGGGAGATGTCTTTTTAGC+TGG + chr1_4:66540612-66540631 Msa0179120:CDS 40.0%
CACTTAAATCTCCTTCACCT+TGG + chr1_4:66540799-66540818 Msa0179120:CDS 40.0%
! CGAGAAGGATGAAGAGTTTT+TGG + chr1_4:66540956-66540975 Msa0179120:CDS 40.0%
GGACCAAAGATGCCAAAATT+AGG + chr1_4:66541120-66541139 Msa0179120:CDS 40.0%
! TGCTACAGGTTCCCTAATTT+TGG - chr1_4:66541135-66541154 None:intergenic 40.0%
GGACACAAAGGATACAAACT+AGG + chr1_4:66541159-66541178 Msa0179120:CDS 40.0%
AGTATTGCGTTGAGTGAAGA+AGG + chr1_4:66541212-66541231 Msa0179120:CDS 40.0%
GTTGTGTTCCTCTTCTTACT+TGG - chr1_4:66541401-66541420 None:intergenic 40.0%
GTAAGAAGAGGAACACAACT+AGG + chr1_4:66541402-66541421 Msa0179120:CDS 40.0%
AGGAAAAGAAAGGTCAGTTC+TGG + chr1_4:66541422-66541441 Msa0179120:intron 40.0%
! AAAGGTCAGTTCTGGTAATG+TGG + chr1_4:66541430-66541449 Msa0179120:intron 40.0%
! AACACAAACCATTTGCTGCA+GGG - chr1_4:66541579-66541598 None:intergenic 40.0%
! AAACACAAACCATTTGCTGC+AGG - chr1_4:66541580-66541599 None:intergenic 40.0%
ACATAGTAACCATCATGAGG+TGG - chr1_4:66541960-66541979 None:intergenic 40.0%
GTTAATCAACACAGCATGCA+AGG + chr1_4:66541978-66541997 Msa0179120:CDS 40.0%
CATGATTAGGACAACTTACC+AGG - chr1_4:66542004-66542023 None:intergenic 40.0%
GTAGGGTCCATTGAATTCTA+TGG + chr1_4:66542143-66542162 Msa0179120:intron 40.0%
GTGTTCCAAAATACCCATCA+TGG - chr1_4:66542176-66542195 None:intergenic 40.0%
! GGAACACAACAAAGCATTCA+TGG + chr1_4:66542189-66542208 Msa0179120:CDS 40.0%
! ACAACAAAGCATTCATGGGA+TGG + chr1_4:66542194-66542213 Msa0179120:CDS 40.0%
!! CAAGTTTGCTAACTATGGGT+TGG + chr1_4:66542278-66542297 Msa0179120:intron 40.0%
!! AACTATGGGTTGGTTCATGT+AGG + chr1_4:66542288-66542307 Msa0179120:intron 40.0%
!! ACTATGGGTTGGTTCATGTA+GGG + chr1_4:66542289-66542308 Msa0179120:intron 40.0%
CTGAAGGCTATATCCAAAAG+TGG - chr1_4:66542341-66542360 None:intergenic 40.0%
! CACTTTTGGATATAGCCTTC+AGG + chr1_4:66542339-66542358 Msa0179120:CDS 40.0%
CATGTCATGAACAAACCTGA+AGG - chr1_4:66542357-66542376 None:intergenic 40.0%
TCAGGCTCATCCTACAATTA+AGG - chr1_4:66542470-66542489 None:intergenic 40.0%
! ACTCCATCTAAGGTGATCTA+AGG - chr1_4:66542822-66542841 None:intergenic 40.0%
TTCTCACCAAAAATGTGGTC+AGG - chr1_4:66542862-66542881 None:intergenic 40.0%
!! CCTATAGGGGGTGTTTGTTT+GGG - chr1_4:66538088-66538107 None:intergenic 45.0%
!! TCCTATAGGGGGTGTTTGTT+TGG - chr1_4:66538089-66538108 None:intergenic 45.0%
AAACGCGAGTGAGAAAGCTA+GGG - chr1_4:66538655-66538674 None:intergenic 45.0%
AAAACGCGAGTGAGAAAGCT+AGG - chr1_4:66538656-66538675 None:intergenic 45.0%
CTCTGTTCAGTGTTCCTGAT+TGG + chr1_4:66539045-66539064 Msa0179120:intron 45.0%
AGCAGGAATCCAATTGTAGC+CGG - chr1_4:66539308-66539327 None:intergenic 45.0%
TAGTGCAGTGAGTGGAAGTA+TGG + chr1_4:66539351-66539370 Msa0179120:CDS 45.0%
! AGTGCAGTGAGTGGAAGTAT+GGG + chr1_4:66539352-66539371 Msa0179120:CDS 45.0%
!! GTCAATGAAGAGCATCACAC+GGG + chr1_4:66539382-66539401 Msa0179120:CDS 45.0%
AGAAAGCTATGCCCCTCTTA+GGG - chr1_4:66539426-66539445 None:intergenic 45.0%
AAGAAAGCTATGCCCCTCTT+AGG - chr1_4:66539427-66539446 None:intergenic 45.0%
! AGGGGCATAGCTTTCTTTGA+AGG + chr1_4:66539430-66539449 Msa0179120:CDS 45.0%
GGGGCATAGCTTTCTTTGAA+GGG + chr1_4:66539431-66539450 Msa0179120:CDS 45.0%
! GGGCATAGCTTTCTTTGAAG+GGG + chr1_4:66539432-66539451 Msa0179120:CDS 45.0%
! AGCTTTCTTTGAAGGGGACA+CGG + chr1_4:66539438-66539457 Msa0179120:CDS 45.0%
! ACGGATTTTGAGCCACCTAA+CGG + chr1_4:66539457-66539476 Msa0179120:CDS 45.0%
ATACCTAGAGCACGCGAATT+TGG - chr1_4:66539605-66539624 None:intergenic 45.0%
! AAATTCGCGTGCTCTAGGTA+TGG + chr1_4:66539604-66539623 Msa0179120:CDS 45.0%
TAACACCTGAGTCTGATGGT+AGG + chr1_4:66539629-66539648 Msa0179120:CDS 45.0%
CACGTGAAGAAAAACCCAGA+TGG + chr1_4:66539700-66539719 Msa0179120:CDS 45.0%
TCTGGTGGCTGTCAAAACAT+TGG + chr1_4:66539895-66539914 Msa0179120:CDS 45.0%
CTGGTGGCTGTCAAAACATT+GGG + chr1_4:66539896-66539915 Msa0179120:CDS 45.0%
!! CAGTATCTGGCTTTGGATGA+GGG + chr1_4:66539958-66539977 Msa0179120:CDS 45.0%
! GCAATATAGGTTGGGAGTGA+TGG - chr1_4:66540206-66540225 None:intergenic 45.0%
CACTCCCAACCTATATTGCT+TGG + chr1_4:66540207-66540226 Msa0179120:CDS 45.0%
GTCAAACTGTTCATCTGTCC+AGG - chr1_4:66540496-66540515 None:intergenic 45.0%
TGTACGAAGACCGGAAAAAG+TGG + chr1_4:66540577-66540596 Msa0179120:CDS 45.0%
GTACGAAGACCGGAAAAAGT+GGG + chr1_4:66540578-66540597 Msa0179120:CDS 45.0%
AAGACATCTCCCATGTACGT+CGG - chr1_4:66540606-66540625 None:intergenic 45.0%
GGTGAAGGAGATTTAAGTGC+AGG - chr1_4:66540798-66540817 None:intergenic 45.0%
CTACACCCAACACTTCAACT+TGG - chr1_4:66540872-66540891 None:intergenic 45.0%
GTGTAGCTGGATGTCAATCT+AGG + chr1_4:66540886-66540905 Msa0179120:CDS 45.0%
! TGGATGTCAATCTAGGACAG+AGG + chr1_4:66540893-66540912 Msa0179120:CDS 45.0%
! TGTCAATCTAGGACAGAGGT+TGG + chr1_4:66540897-66540916 Msa0179120:CDS 45.0%
CACTCAATGCATGTCTGCAA+AGG - chr1_4:66541046-66541065 None:intergenic 45.0%
TTGAGTGTTCTCCAACGTTG+CGG + chr1_4:66541059-66541078 Msa0179120:CDS 45.0%
TTAGGGAACCTGTAGCAGAT+AGG + chr1_4:66541138-66541157 Msa0179120:CDS 45.0%
CTTTGTGTCCTATCTGCTAC+AGG - chr1_4:66541149-66541168 None:intergenic 45.0%
CTGTAGCAGATAGGACACAA+AGG + chr1_4:66541147-66541166 Msa0179120:CDS 45.0%
AACGACAATGGTGCAGAAAC+TGG + chr1_4:66541317-66541336 Msa0179120:CDS 45.0%
TCAAGATACCCTGCAGCAAA+TGG + chr1_4:66541568-66541587 Msa0179120:CDS 45.0%
CTTGATGCAATGCAAGCAGT+AGG - chr1_4:66541694-66541713 None:intergenic 45.0%
CTACTGCTTGCATTGCATCA+AGG + chr1_4:66541692-66541711 Msa0179120:intron 45.0%
GTTACATGAAGCGCATGCTA+TGG - chr1_4:66541730-66541749 None:intergenic 45.0%
TCGGATGCAATTGCCCTTAA+TGG + chr1_4:66541782-66541801 Msa0179120:CDS 45.0%
TTAATGGAGCCACCTCATGA+TGG + chr1_4:66541948-66541967 Msa0179120:CDS 45.0%
CTCGGAGCCATAGAATTCAA+TGG - chr1_4:66542153-66542172 None:intergenic 45.0%
CCAAAATACCCATCATGGCT+CGG - chr1_4:66542171-66542190 None:intergenic 45.0%
! TATCGTCCGACAACCACTTT+TGG + chr1_4:66542325-66542344 Msa0179120:CDS 45.0%
! TTGCTGTGAAAGTGTGGATC+AGG - chr1_4:66542488-66542507 None:intergenic 45.0%
GAACTGTTGCTGTGAAAGTG+TGG - chr1_4:66542494-66542513 None:intergenic 45.0%
! TGAACTTGACGGGTGAGAAT+TGG + chr1_4:66542773-66542792 Msa0179120:three_prime_UTR 45.0%
! CTAAGGTGATCTAAGGTGGA+TGG - chr1_4:66542815-66542834 None:intergenic 45.0%
! CCATCTAAGGTGATCTAAGG+TGG - chr1_4:66542819-66542838 None:intergenic 45.0%
CCACCTTAGATCACCTTAGA+TGG + chr1_4:66542816-66542835 Msa0179120:three_prime_UTR 45.0%
AGTCACCGCGATATAGTAGA+TGG + chr1_4:66542915-66542934 Msa0179120:three_prime_UTR 45.0%
TAGTAGATGGAATCTCACCG+TGG + chr1_4:66542928-66542947 Msa0179120:three_prime_UTR 45.0%
AAATTCCAGACCCTCACCCT+CGG + chr1_4:66537924-66537943 Msa0179120:CDS 50.0%
CCCAAACAAACACCCCCTAT+AGG + chr1_4:66538085-66538104 Msa0179120:intron 50.0%
GGAAAGAAAGGCAAGGGATG+CGG + chr1_4:66538391-66538410 Msa0179120:intron 50.0%
! AGAGAGTGCAAAAACGCGTG+TGG + chr1_4:66538458-66538477 Msa0179120:intron 50.0%
TATGAAGTGGATCCGCGAGT+GGG - chr1_4:66538684-66538703 None:intergenic 50.0%
ATATGAAGTGGATCCGCGAG+TGG - chr1_4:66538685-66538704 None:intergenic 50.0%
GCAGGAATCCAATTGTAGCC+GGG - chr1_4:66539307-66539326 None:intergenic 50.0%
! AATGGTGGTAGTGCAGTGAG+TGG + chr1_4:66539343-66539362 Msa0179120:CDS 50.0%
!! AATGAAGAGCATCACACGGG+TGG + chr1_4:66539385-66539404 Msa0179120:CDS 50.0%
ACTGGTTGCTTCCCCTAAGA+GGG + chr1_4:66539411-66539430 Msa0179120:CDS 50.0%
GAAAGCTATGCCCCTCTTAG+GGG - chr1_4:66539425-66539444 None:intergenic 50.0%
ATGCCAAATTCGCGTGCTCT+AGG + chr1_4:66539599-66539618 Msa0179120:CDS 50.0%
GGAGTAACACCTGAGTCTGA+TGG + chr1_4:66539625-66539644 Msa0179120:CDS 50.0%
GTTTGACAGAGGGCAGTATC+TGG + chr1_4:66539945-66539964 Msa0179120:CDS 50.0%
!! GCAGTATCTGGCTTTGGATG+AGG + chr1_4:66539957-66539976 Msa0179120:CDS 50.0%
!! TGGCTTTGGATGAGGGAGAT+GGG + chr1_4:66539965-66539984 Msa0179120:CDS 50.0%
AGGACATGGCTTAGAGCGAT+GGG + chr1_4:66540279-66540298 Msa0179120:CDS 50.0%
!!! ACGTCGGTACCCACTTTTTC+CGG - chr1_4:66540590-66540609 None:intergenic 50.0%
!! AAAGTGGGTACCGACGTACA+TGG + chr1_4:66540593-66540612 Msa0179120:CDS 50.0%
!! AAGTGGGTACCGACGTACAT+GGG + chr1_4:66540594-66540613 Msa0179120:CDS 50.0%
TTCACACTGTCGGAACGTTG+AGG - chr1_4:66540648-66540667 None:intergenic 50.0%
!! GTTGAAGTGTTGGGTGTAGC+TGG + chr1_4:66540873-66540892 Msa0179120:CDS 50.0%
! TCTAGGACAGAGGTTGGAGA+TGG + chr1_4:66540903-66540922 Msa0179120:CDS 50.0%
! TTGGAACGAGTTGAGCTCAG+AGG + chr1_4:66540983-66541002 Msa0179120:CDS 50.0%
CACTTGAACAACCGCAACGT+TGG - chr1_4:66541073-66541092 None:intergenic 50.0%
GGTGCAGAAACTGGCAACAA+TGG + chr1_4:66541326-66541345 Msa0179120:CDS 50.0%
!! TCTTGAGCGTCGACAAGTAC+AGG - chr1_4:66541554-66541573 None:intergenic 50.0%
GGTACTCAGCAGAATGTGCA+AGG + chr1_4:66541812-66541831 Msa0179120:CDS 50.0%
TCAGCAGAATGTGCAAGGAC+TGG + chr1_4:66541817-66541836 Msa0179120:CDS 50.0%
!!! CCGAGCCATGATGGGTATTT+TGG + chr1_4:66542168-66542187 Msa0179120:CDS 50.0%
!! ATGGGTTGGTTCATGTAGGG+AGG + chr1_4:66542292-66542311 Msa0179120:intron 50.0%
!! TGGGTTGGTTCATGTAGGGA+GGG + chr1_4:66542293-66542312 Msa0179120:intron 50.0%
GTTCATGTAGGGAGGGCAAT+TGG + chr1_4:66542300-66542319 Msa0179120:intron 50.0%
TAGCTTCCTCAGAAGCTGTG+AGG + chr1_4:66542550-66542569 Msa0179120:three_prime_UTR 50.0%
CAATCACCTCACAGCTTCTG+AGG - chr1_4:66542559-66542578 None:intergenic 50.0%
AATTCCAGACCCTCACCCTC+GGG + chr1_4:66537925-66537944 Msa0179120:CDS 55.0%
AGGACGCGCTGTTAATGCAG+AGG + chr1_4:66538529-66538548 Msa0179120:intron 55.0%
!!! GCGTTTTTTTCCCCCACTCG+CGG + chr1_4:66538669-66538688 Msa0179120:intron 55.0%
ATGAAGTGGATCCGCGAGTG+GGG - chr1_4:66538683-66538702 None:intergenic 55.0%
CAAACATGGGCAGCCCAATC+AGG - chr1_4:66539062-66539081 None:intergenic 55.0%
CTGATTGGGCTGCCCATGTT+TGG + chr1_4:66539060-66539079 Msa0179120:intron 55.0%
ATCCAATTGTAGCCGGGCTG+CGG - chr1_4:66539301-66539320 None:intergenic 55.0%
! CACTGGTTGCTTCCCCTAAG+AGG + chr1_4:66539410-66539429 Msa0179120:CDS 55.0%
CTGGTTGCTTCCCCTAAGAG+GGG + chr1_4:66539412-66539431 Msa0179120:CDS 55.0%
CTGCTCCTACCATCAGACTC+AGG - chr1_4:66539637-66539656 None:intergenic 55.0%
! CAGAGGGCAGTATCTGGCTT+TGG + chr1_4:66539951-66539970 Msa0179120:CDS 55.0%
!! CTGGCTTTGGATGAGGGAGA+TGG + chr1_4:66539964-66539983 Msa0179120:CDS 55.0%
GGGAGATGGGCAAGTTATGC+TGG + chr1_4:66539978-66539997 Msa0179120:CDS 55.0%
GAGGACATGGCTTAGAGCGA+TGG + chr1_4:66540278-66540297 Msa0179120:CDS 55.0%
ACATGGCTTAGAGCGATGGG+AGG + chr1_4:66540282-66540301 Msa0179120:CDS 55.0%
CATGGCTTAGAGCGATGGGA+GGG + chr1_4:66540283-66540302 Msa0179120:CDS 55.0%
ACTGTCGGAACGTTGAGGTG+TGG - chr1_4:66540643-66540662 None:intergenic 55.0%
TCAACACAGCATGCAAGGCC+TGG + chr1_4:66541983-66542002 Msa0179120:CDS 55.0%
TCTATGGCTCCGAGCCATGA+TGG + chr1_4:66542159-66542178 Msa0179120:CDS 55.0%
CTATGGCTCCGAGCCATGAT+GGG + chr1_4:66542160-66542179 Msa0179120:CDS 55.0%
TATTCCCGAGGGTGAGGGTC+TGG - chr1_4:66537932-66537951 None:intergenic 60.0%
TGAAGTGGATCCGCGAGTGG+GGG - chr1_4:66538682-66538701 None:intergenic 60.0%
TACAGCAAGTGGCCGCAGCC+CGG + chr1_4:66539286-66539305 Msa0179120:CDS 65.0%
GCATCACACGGGTGGTGCAC+TGG + chr1_4:66539393-66539412 Msa0179120:CDS 65.0%
GGCCGCAGCCCGGCTACAAT+TGG + chr1_4:66539296-66539315 Msa0179120:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 66537892 66543011 66537892 ID=Msa0179120;Name=Msa0179120
chr1_4 mRNA 66537892 66543011 66537892 ID=Msa0179120-mRNA-1;Parent=Msa0179120;Name=Msa0179120-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.85|0.75|0.87|1|1|8|485|889
chr1_4 exon 66537892 66538003 66537892 ID=Msa0179120-mRNA-1:exon:21797;Parent=Msa0179120-mRNA-1
chr1_4 exon 66539242 66541433 66539242 ID=Msa0179120-mRNA-1:exon:21798;Parent=Msa0179120-mRNA-1
chr1_4 exon 66541533 66541589 66541533 ID=Msa0179120-mRNA-1:exon:21799;Parent=Msa0179120-mRNA-1
chr1_4 exon 66541770 66541838 66541770 ID=Msa0179120-mRNA-1:exon:21800;Parent=Msa0179120-mRNA-1
chr1_4 exon 66541933 66542004 66541933 ID=Msa0179120-mRNA-1:exon:21801;Parent=Msa0179120-mRNA-1
chr1_4 exon 66542147 66542215 66542147 ID=Msa0179120-mRNA-1:exon:21802;Parent=Msa0179120-mRNA-1
chr1_4 exon 66542310 66542360 66542310 ID=Msa0179120-mRNA-1:exon:21803;Parent=Msa0179120-mRNA-1
chr1_4 exon 66542479 66543011 66542479 ID=Msa0179120-mRNA-1:exon:21804;Parent=Msa0179120-mRNA-1
chr1_4 CDS 66537892 66538003 66537892 ID=Msa0179120-mRNA-1:cds;Parent=Msa0179120-mRNA-1
chr1_4 CDS 66539242 66541433 66539242 ID=Msa0179120-mRNA-1:cds;Parent=Msa0179120-mRNA-1
chr1_4 CDS 66541533 66541589 66541533 ID=Msa0179120-mRNA-1:cds;Parent=Msa0179120-mRNA-1
chr1_4 CDS 66541770 66541838 66541770 ID=Msa0179120-mRNA-1:cds;Parent=Msa0179120-mRNA-1
chr1_4 CDS 66541933 66542004 66541933 ID=Msa0179120-mRNA-1:cds;Parent=Msa0179120-mRNA-1
chr1_4 CDS 66542147 66542215 66542147 ID=Msa0179120-mRNA-1:cds;Parent=Msa0179120-mRNA-1
chr1_4 CDS 66542310 66542360 66542310 ID=Msa0179120-mRNA-1:cds;Parent=Msa0179120-mRNA-1
chr1_4 CDS 66542479 66542526 66542479 ID=Msa0179120-mRNA-1:cds;Parent=Msa0179120-mRNA-1
chr1_4 three_prime_UTR 66542527 66543011 66542527 ID=Msa0179120-mRNA-1:three_prime_utr;Parent=Msa0179120-mRNA-1
Gene Sequence

>Msa0179120

ATGAATGTGGAGATTTCATTCCCAGGAATAGAAAATTCCAGACCCTCACCCTCGGGAATAAAATTAGAGAGTCAATGGGTTAATAAGATTCCTGGGAATCATTTATTTCTGGAGTTTGATGGTTTCGCTAATTGGAAACTTTGTTTTGGTGCATTTTACAGCAAGTGGCCGCAGCCCGGCTACAATTGGATTCCTGCTAGTTCATCAAAATGGAATGGTGGTAGTGCAGTGAGTGGAAGTATGGGTGACTCTGTCAATGAAGAGCATCACACGGGTGGTGCACTGGTTGCTTCCCCTAAGAGGGGCATAGCTTTCTTTGAAGGGGACACGGATTTTGAGCCACCTAACGGCATTGAATTTGAAACTCATGAAGCAGCATATTCATTTTATCAAGAGTATGCCAAATCTATGGGATTCACCACTTCCATTAAAAACAGCAGACGATCAAAGAAGACCAAAGAATTTATTGATGCCAAATTCGCGTGCTCTAGGTATGGAGTAACACCTGAGTCTGATGGTAGGAGCAGTCGAAGATCGAGTGTAAAGAAGACAGATTGCAAAGCTTGCATGCACGTGAAGAAAAACCCAGATGGGAAATGGAACATTTTTGAATTTATAAAGGATCATAATCATGAACTTTTACCAGCTTTGGCATATCATTTTCGGATTCATGGAAACGTGAAGTTAGCTGACAAGAATAATATTGATATCTTGCATGCTGTTAGTGAACGTACCCGAAAGATGTATGTTGAAATGTCTAGACAATCTGGTGGCTGTCAAAACATTGGGTCAATCATGGGTGATACGAGTTATCAGTTTGACAGAGGGCAGTATCTGGCTTTGGATGAGGGAGATGGGCAAGTTATGCTGGAGTATTTCAAGCATATTCAAAAGGAGGATCCCAACTTCTTCTATTCTATAGATTTAAACGAGGAACAACGTTTAAGAAATATATTTTGGGTTGATTCAAAAAGCATCGATGATTACCTCAGCTTTAATGATGCAGTTTCATTTGATACTTCCTACATAAAAAGCAACGATAAGTTGCCTTTTGCTCCTTTTGTTGGAGTGAACCATCACTCCCAACCTATATTGCTTGGATGTGCATTGGTTGCTGATGAGACTAAGCCCACTTTTGTTTGGTTACTGAGGACATGGCTTAGAGCGATGGGAGGGCAAGCTCCCAAAGTTATAGTCACTGATCAAGACAAAGCCTTGAAGGAAGCAATTGAAGAAGTCTTCCCAAGTGTACGTCATTGCTTTTCTCTTTGTCACATATTGGAAAAGATACCTGAAAATCTGTCTTTTGTGATAAAACAGTACAAGAACTTCTTGCCAAAGTTTAAGAATTGCATTTTTAAGTCCTGGACAGATGAACAGTTTGACATGAGATGGTGGGAAATAGTGACTATATTTGAACTCCATGATGATGTTTGGTTTCACTCATTGTACGAAGACCGGAAAAAGTGGGTACCGACGTACATGGGAGATGTCTTTTTAGCTGGAATGTCCACACCTCAACGTTCCGACAGTGTGAACTCTTTCTTTGACAAATACATTCATAAGAAAATCACCCTTAAAGAGTTTGTGAAACAGTATAGGTTAATTCTTCTGAATAGGTATGATGAGGAAGAAATCGCAGATTTTGATACATTGCACAAACAACCTGCACTTAAATCTCCTTCACCTTGGGAAAAACAAATGTCAACAATTTATACACATGCAATATTTAAGAAATTCCAAGTTGAAGTGTTGGGTGTAGCTGGATGTCAATCTAGGACAGAGGTTGGAGATGGAACTGTTGTGAGATATATAGTTCAAGATTACGAGAAGGATGAAGAGTTTTTGGTAACTTGGAACGAGTTGAGCTCAGAGGTCTCTTGCTTCTGTCGATTGTTCGAATATAAAGGTTTCCTTTGCAGACATGCATTGAGTGTTCTCCAACGTTGCGGTTGTTCAAGTGTTCCATCTCATTATATCATGAAGAGATGGACCAAAGATGCCAAAATTAGGGAACCTGTAGCAGATAGGACACAAAGGATACAAACTAGGCCTCAACGTTATAATGATGTGTGCAAACGAAGTATTGCGTTGAGTGAAGAAGGATCATCATCCGAAGAGAGTTATAATGTTGCTTTGCGCGCACTTGTTGATGCTTTGAAGAACTGTGTACTTGTAAATAACTCTAACGACAATGGTGCAGAAACTGGCAACAATGGTTACAGTCTTCGCGAAGCAGAAGAATATCAGAGTACCCTTGCTTCAAAACCAAGTAAGAAGAGGAACACAACTAGGAAAAGAAAGGTGCAACAAGAGCAGAGTCCTGTACTTGTCGACGCTCAAGATACCCTGCAGCAAATGGATAATCTTAGCTCGGATGCAATTGCCCTTAATGGATATTATGGTACTCAGCAGAATGTGCAAGGACTGCATGTACAGTTGAACTTAATGGAGCCACCTCATGATGGTTACTATGTTAATCAACACAGCATGCAAGGCCTGGGTCCATTGAATTCTATGGCTCCGAGCCATGATGGGTATTTTGGAACACAACAAAGCATTCATGGGATGGGAGGGCAATTGGAGTATCGTCCGACAACCACTTTTGGATATAGCCTTCAGGATGAGCCTGATCCACACTTTCACAGCAACAGTTCAAGAAATACTTAG
Protein sequence

>Msa0179120

MNVEISFPGIENSRPSPSGIKLESQWVNKIPGNHLFLEFDGFANWKLCFGAFYSKWPQPGYNWIPASSSKWNGGSAVSGSMGDSVNEEHHTGGALVASPKRGIAFFEGDTDFEPPNGIEFETHEAAYSFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDGRSSRRSSVKKTDCKACMHVKKNPDGKWNIFEFIKDHNHELLPALAYHFRIHGNVKLADKNNIDILHAVSERTRKMYVEMSRQSGGCQNIGSIMGDTSYQFDRGQYLALDEGDGQVMLEYFKHIQKEDPNFFYSIDLNEEQRLRNIFWVDSKSIDDYLSFNDAVSFDTSYIKSNDKLPFAPFVGVNHHSQPILLGCALVADETKPTFVWLLRTWLRAMGGQAPKVIVTDQDKALKEAIEEVFPSVRHCFSLCHILEKIPENLSFVIKQYKNFLPKFKNCIFKSWTDEQFDMRWWEIVTIFELHDDVWFHSLYEDRKKWVPTYMGDVFLAGMSTPQRSDSVNSFFDKYIHKKITLKEFVKQYRLILLNRYDEEEIADFDTLHKQPALKSPSPWEKQMSTIYTHAIFKKFQVEVLGVAGCQSRTEVGDGTVVRYIVQDYEKDEEFLVTWNELSSEVSCFCRLFEYKGFLCRHALSVLQRCGCSSVPSHYIMKRWTKDAKIREPVADRTQRIQTRPQRYNDVCKRSIALSEEGSSSEESYNVALRALVDALKNCVLVNNSNDNGAETGNNGYSLREAEEYQSTLASKPSKKRNTTRKRKVQQEQSPVLVDAQDTLQQMDNLSSDAIALNGYYGTQQNVQGLHVQLNLMEPPHDGYYVNQHSMQGLGPLNSMAPSHDGYFGTQQSIHGMGGQLEYRPTTTFGYSLQDEPDPHFHSNSSRNT*