AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0041860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0041860 MtrunA17_Chr1g0207551 97.411 811 19 1 116 924 1 811 0.0 1668
Msa0041860 MtrunA17_Chr3g0080351 49.465 841 376 9 105 924 32 844 0.0 795
Msa0041860 MtrunA17_Chr2g0329031 49.424 694 326 8 143 826 8 686 0.0 677
Msa0041860 MtrunA17_Chr5g0448761 36.505 641 390 8 137 761 48 687 8.54e-143 443
Msa0041860 MtrunA17_Chr1g0202341 34.281 633 401 6 147 767 49 678 1.33e-123 390
Msa0041860 MtrunA17_Chr2g0291581 34.450 627 385 10 142 755 63 676 2.21e-120 382
Msa0041860 MtrunA17_Chr5g0441581 34.548 631 386 7 147 768 30 642 2.01e-118 377
Msa0041860 MtrunA17_Chr2g0296781 35.273 567 353 6 153 710 1 562 9.48e-115 368
Msa0041860 MtrunA17_Chr5g0440451 32.669 652 387 15 148 765 42 675 7.54e-111 363
Msa0041860 MtrunA17_Chr6g0477261 39.720 428 250 3 290 710 25 451 3.64e-105 340
Msa0041860 MtrunA17_Chr1g0196541 32.630 616 386 9 153 753 1 602 3.72e-104 340
Msa0041860 MtrunA17_Chr3g0118611 37.194 449 276 3 320 764 118 564 3.85e-100 330
Msa0041860 MtrunA17_Chr2g0291591 34.195 503 325 4 148 648 63 561 4.08e-97 316
Msa0041860 MtrunA17_Chr2g0287061 34.744 567 327 9 141 704 175 701 2.77e-94 315
Msa0041860 MtrunA17_Chr5g0448511 34.009 444 287 2 319 756 11 454 2.81e-94 308
Msa0041860 MtrunA17_Chr3g0082121 31.331 616 394 13 142 744 36 635 2.48e-91 305
Msa0041860 MtrunA17_Chr8g0363841 31.127 559 368 7 157 704 25 577 9.79e-90 300
Msa0041860 MtrunA17_Chr1g0203721 28.031 635 443 6 152 773 66 699 3.15e-82 284
Msa0041860 MtrunA17_Chr2g0324011 27.768 569 400 6 144 705 5 569 3.93e-82 276
Msa0041860 MtrunA17_Chr6g0458391 29.401 568 378 5 142 705 218 766 1.26e-80 277
Msa0041860 MtrunA17_Chr2g0287651 29.893 562 376 9 153 704 79 632 1.56e-80 279
Msa0041860 MtrunA17_Chr2g0276841 29.887 619 396 15 149 747 70 670 3.35e-73 255
Msa0041860 MtrunA17_Chr1g0203051 28.924 567 365 16 144 691 74 621 2.35e-68 240
Msa0041860 MtrunA17_Chr1g0198761 29.340 576 373 14 152 705 50 613 2.72e-67 239
Msa0041860 MtrunA17_Chr2g0294841 27.018 607 421 11 108 699 4 603 9.50e-60 218
Msa0041860 MtrunA17_Chr2g0290391 26.180 657 425 19 149 771 51 681 1.81e-58 213
Msa0041860 MtrunA17_Chr1g0164591 29.870 308 206 4 233 539 10 308 2.55e-47 172
Msa0041860 MtrunA17_Chr5g0431001 28.221 489 311 13 89 555 10 480 1.43e-46 174
Msa0041860 MtrunA17_Chr7g0258861 27.431 288 200 5 144 424 5 290 1.19e-32 129
Msa0041860 MtrunA17_Chr2g0308841 26.800 250 155 4 480 714 1 237 6.08e-20 90.9
Msa0041860 MtrunA17_Chr7g0233911 38.053 113 66 2 148 257 33 144 2.77e-16 79.0
Msa0041860 MtrunA17_Chr3g0078041 37.383 107 60 2 148 249 49 153 3.99e-16 78.6
Msa0041860 MtrunA17_Chr4g0033611 29.630 135 91 2 118 251 48 179 3.72e-14 73.6
Msa0041860 MtrunA17_Chr2g0329361 31.250 112 72 2 143 249 54 165 8.53e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0041860 AT4G15090.1 66.710 778 252 4 137 911 39 812 0.0 1088
Msa0041860 AT4G15090.5 66.710 778 252 4 137 911 39 812 0.0 1088
Msa0041860 AT4G15090.3 66.710 778 252 4 137 911 39 812 0.0 1088
Msa0041860 AT4G15090.2 66.710 778 252 4 137 911 39 812 0.0 1088
Msa0041860 AT4G15090.4 66.710 778 252 4 137 911 39 812 0.0 1088
Msa0041860 AT3G22170.2 49.692 811 353 10 138 924 60 839 0.0 800
Msa0041860 AT3G22170.1 49.692 811 353 10 138 924 60 839 0.0 800
Msa0041860 AT1G76320.1 42.663 736 388 6 153 862 1 728 0.0 623
Msa0041860 AT1G76320.4 42.663 736 388 6 153 862 1 728 0.0 623
Msa0041860 AT1G76320.2 46.479 639 330 4 153 787 1 631 0.0 622
Msa0041860 AT1G76320.3 46.479 639 330 4 153 787 1 631 0.0 621
Msa0041860 AT4G19990.6 43.798 774 340 13 146 895 18 720 0.0 550
Msa0041860 AT4G19990.5 43.798 774 340 13 146 895 18 720 0.0 550
Msa0041860 AT4G19990.2 43.798 774 340 13 146 895 18 720 0.0 550
Msa0041860 AT4G19990.3 43.798 774 340 13 146 895 18 720 0.0 549
Msa0041860 AT4G19990.4 43.798 774 340 13 146 895 18 720 0.0 549
Msa0041860 AT4G19990.7 43.798 774 340 13 146 895 32 734 0.0 549
Msa0041860 AT2G32250.2 39.130 782 406 10 148 905 37 772 5.07e-176 531
Msa0041860 AT2G32250.4 39.130 782 406 10 148 905 37 772 5.07e-176 531
Msa0041860 AT2G32250.6 39.080 783 407 10 148 905 37 774 1.64e-175 530
Msa0041860 AT2G32250.1 39.080 783 407 10 148 905 37 774 1.64e-175 530
Msa0041860 AT2G32250.3 39.080 783 407 10 148 905 37 774 1.64e-175 530
Msa0041860 AT2G32250.5 39.323 768 397 9 148 891 37 759 3.89e-175 527
Msa0041860 AT2G32250.8 38.996 777 404 10 153 905 1 731 3.11e-174 525
Msa0041860 AT2G32250.7 38.946 778 405 10 153 905 1 733 4.97e-174 524
Msa0041860 AT4G19990.1 43.111 733 322 13 187 895 2 663 5.28e-167 504
Msa0041860 AT4G38180.1 37.778 630 379 5 146 763 70 698 3.87e-145 450
Msa0041860 AT2G27110.2 33.816 621 374 9 148 761 48 638 3.31e-116 375
Msa0041860 AT2G27110.1 33.816 621 374 9 148 761 48 638 3.31e-116 375
Msa0041860 AT1G52520.1 34.694 637 379 13 149 766 85 703 3.72e-113 363
Msa0041860 AT2G27110.3 36.907 485 285 6 283 761 24 493 2.03e-105 343
Msa0041860 AT1G80010.1 32.432 629 396 14 149 758 95 713 5.66e-105 342
Msa0041860 AT3G06250.2 34.286 560 323 8 148 705 189 705 7.57e-99 327
Msa0041860 AT3G06250.2 33.929 112 63 1 137 248 16 116 6.90e-11 66.6
Msa0041860 AT3G06250.1 34.286 560 323 8 148 705 189 705 7.57e-99 327
Msa0041860 AT3G06250.1 33.929 112 63 1 137 248 16 116 6.90e-11 66.6
Msa0041860 AT3G06250.3 34.286 560 323 8 148 705 189 705 7.57e-99 327
Msa0041860 AT3G06250.3 33.929 112 63 1 137 248 16 116 6.90e-11 66.6
Msa0041860 AT5G18960.2 33.333 567 328 9 145 705 207 729 3.14e-94 315
Msa0041860 AT5G18960.1 33.333 567 328 9 145 705 207 729 3.14e-94 315
Msa0041860 AT4G38170.1 32.911 474 291 6 324 783 21 481 6.20e-86 286
Msa0041860 AT1G10240.2 29.322 590 384 13 149 717 48 625 8.65e-71 248
Msa0041860 AT1G10240.1 29.322 590 384 13 149 717 48 625 8.65e-71 248
Msa0041860 AT5G28530.3 27.721 588 376 16 144 703 50 616 2.04e-56 207
Msa0041860 AT5G28530.2 27.721 588 376 16 144 703 50 616 2.04e-56 207
Msa0041860 AT5G28530.1 27.211 588 383 15 144 703 50 620 3.27e-56 207
Msa0041860 AT5G28530.5 26.343 577 335 21 144 703 50 553 9.71e-40 157
Msa0041860 AT5G28530.4 25.823 577 342 20 144 703 50 557 1.37e-39 156
Msa0041860 AT2G43280.1 36.975 119 66 3 144 255 17 133 1.35e-15 77.0
Msa0041860 AT4G12850.4 39.604 101 60 1 148 248 10 109 5.87e-15 73.2
Msa0041860 AT4G12850.2 39.604 101 60 1 148 248 10 109 8.01e-15 72.8
Msa0041860 AT3G59470.2 34.286 105 68 1 148 251 81 185 3.57e-14 74.3
Msa0041860 AT3G59470.3 34.286 105 68 1 148 251 69 173 3.62e-14 73.9
Msa0041860 AT3G59470.1 34.286 105 68 1 148 251 69 173 3.62e-14 73.9
Msa0041860 AT4G12850.1 39.604 101 60 1 148 248 10 109 4.15e-14 72.0
Msa0041860 AT3G07500.1 30.323 155 98 2 142 294 26 172 8.84e-14 72.0
Msa0041860 AT2G43280.2 35.354 99 55 3 164 255 2 98 7.67e-11 62.4

Find 216 sgRNAs with CRISPR-Local

Find 619 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTTTCCTATGTTACCTTTA+TGG 0.105788 1_1:+72437712 None:intergenic
TACTACAGGTTCCCTAATTT+TGG 0.145787 1_1:+72429904 None:intergenic
CCGAGCCATGATGGGTATTT+TGG 0.151356 1_1:-72428867 Msa0041860:CDS
GCTTCTTCTGTTCTACTAAA+TGG 0.168219 1_1:+72437734 None:intergenic
ACTGTTTCACAAACTCTTTA+AGG 0.204134 1_1:+72430332 None:intergenic
AACGTTTAAGAAATATATTT+TGG 0.206444 1_1:-72430969 Msa0041860:CDS
TCGGATGCAATTGCCCTTAA+TGG 0.236596 1_1:-72429254 Msa0041860:CDS
ATTGCCCTTAATGGATATTA+TGG 0.237741 1_1:-72429245 Msa0041860:CDS
AGTTTGATGGTTTCGCTAAT+TGG 0.252792 1_1:-72431794 Msa0041860:CDS
GGACCAAAGATGCCAAAATT+AGG 0.253094 1_1:-72429916 Msa0041860:CDS
TTTGGCATCAATAAATTCTT+TGG 0.254194 1_1:+72431452 None:intergenic
CATTTCAACATACATCTTTC+GGG 0.258771 1_1:+72431173 None:intergenic
TGTCGATTGTTCGAATATAA+AGG 0.270665 1_1:-72430019 Msa0041860:CDS
GAGTACCATAATATCCATTA+AGG 0.276199 1_1:+72429240 None:intergenic
TCAAGAGTATGCCAAATCTA+TGG 0.278613 1_1:-72431517 Msa0041860:CDS
ATACCTAGAGCACGCGAATT+TGG 0.279686 1_1:+72431434 None:intergenic
ACATTTCAACATACATCTTT+CGG 0.295052 1_1:+72431172 None:intergenic
AAGAAAGCTATGCCCCTCTT+AGG 0.295788 1_1:+72431612 None:intergenic
CTGTTTCACAAACTCTTTAA+GGG 0.296391 1_1:+72430333 None:intergenic
ATATTCAGAAGAAATGAAAT+TGG 0.307598 1_1:+72428165 None:intergenic
TTCCTGCTAGTTCATCAAAA+TGG 0.314122 1_1:-72431716 Msa0041860:CDS
TTGATCAGTGACTATAACTT+TGG 0.317440 1_1:+72430723 None:intergenic
GCATGTACAGTTGAACTTAA+TGG 0.318417 1_1:-72429104 Msa0041860:CDS
TAGGCTTCAAGAATTGAAAA+AGG 0.321072 1_1:-72436093 Msa0041860:CDS
AATTTGTCTCTTCTTTGATA+TGG 0.325090 1_1:-72428511 Msa0041860:three_prime_UTR
TATCGTCCGACAACCACTTT+TGG 0.332110 1_1:-72428713 Msa0041860:CDS
AAAATGCAATTCTTAAACTT+TGG 0.338533 1_1:+72430571 None:intergenic
TAGTGCAGTGAGTGGAAGTA+TGG 0.343019 1_1:-72431685 Msa0041860:CDS
GAAATTGCCCATTGAAATCT+AGG 0.344447 1_1:-72428317 Msa0041860:three_prime_UTR
AAAATGTTCCATTTCCCATC+TGG 0.352283 1_1:+72431321 None:intergenic
ATAAAAGTTCACTCCATCTA+AGG 0.353032 1_1:+72428219 None:intergenic
GCTAATTGGAAACTTTGTTT+TGG 0.353265 1_1:-72431780 Msa0041860:CDS
TTCTTCAATTGCTTCCTTCA+AGG 0.360322 1_1:+72430693 None:intergenic
GTAGGGTCCATTGAATTCTA+TGG 0.362242 1_1:-72428892 Msa0041860:intron
AACGACAATGGTGCAGAAAC+TGG 0.362647 1_1:-72429719 Msa0041860:CDS
GTTTGACAGAGGGCAGTATC+TGG 0.368111 1_1:-72431091 Msa0041860:CDS
GGCCGCAGCCCGGCTACAAT+TGG 0.381550 1_1:-72431740 Msa0041860:CDS
ATAGGTTAATTCTTCTGAAT+AGG 0.384277 1_1:-72430309 Msa0041860:CDS
TAGAACAGAAGAAGCCATAA+AGG 0.386304 1_1:-72437726 Msa0041860:intron
GTTGTGTTCCTCTTCTTACT+TGG 0.388273 1_1:+72429638 None:intergenic
AAAAGAGAATTGAAAGAACT+TGG 0.390296 1_1:-72428459 Msa0041860:three_prime_UTR
GGAACACAACAAAGCATTCA+TGG 0.390771 1_1:-72428846 Msa0041860:CDS
AAACATCCATCCACCTTAGA+TGG 0.394409 1_1:-72428232 Msa0041860:three_prime_UTR
TGAACTTGACGGGTGAGAAT+TGG 0.396608 1_1:-72428265 Msa0041860:three_prime_UTR
TGATCAAGACAAAGCCTTGA+AGG 0.399103 1_1:-72430707 Msa0041860:CDS
AGAAAGCTATGCCCCTCTTA+GGG 0.402896 1_1:+72431613 None:intergenic
ATCTATAGAATAGAAGAAGT+TGG 0.403398 1_1:+72431005 None:intergenic
TACTTTACCTAGATTTCAAT+GGG 0.408447 1_1:+72428310 None:intergenic
AAGAGTTTGTGAAACAGTAT+AGG 0.409635 1_1:-72430327 Msa0041860:CDS
AGTGGTGAATCCCATAGATT+TGG 0.415385 1_1:+72431506 None:intergenic
CAGAGGGCAGTATCTGGCTT+TGG 0.416018 1_1:-72431085 Msa0041860:CDS
CACTGGTTGCTTCCCCTAAG+AGG 0.417880 1_1:-72431626 Msa0041860:CDS
TATGTTCCATCTATTATGTC+TGG 0.422350 1_1:-72428091 Msa0041860:three_prime_UTR
AATGCACATCCAAGCAATAT+AGG 0.426423 1_1:+72430820 None:intergenic
GACCAAAGATGCCAAAATTA+GGG 0.426826 1_1:-72429915 Msa0041860:CDS
GTACTTTACCTAGATTTCAA+TGG 0.431371 1_1:+72428309 None:intergenic
AGTCACCGCGATATAGTAGA+TGG 0.432401 1_1:-72428134 Msa0041860:three_prime_UTR
TTGAACTCCATGATGATGTT+TGG 0.435488 1_1:-72430492 Msa0041860:CDS
TGATCAGTGACTATAACTTT+GGG 0.440778 1_1:+72430724 None:intergenic
AAATGTTCCATTTCCCATCT+GGG 0.441346 1_1:+72431322 None:intergenic
TTGCTGTGAAAGTGTGGATC+AGG 0.445132 1_1:+72428553 None:intergenic
TCAAAACATTGGGTCAATCA+TGG 0.447302 1_1:-72431130 Msa0041860:CDS
GTGATACCAGACATAATAGA+TGG 0.447657 1_1:+72428085 None:intergenic
CTTTGTGTCCTATCTACTAC+AGG 0.448746 1_1:+72429890 None:intergenic
GTTGAAGTGTTGGGTGTAGC+TGG 0.449517 1_1:-72430163 Msa0041860:CDS
GTTCATGTAGGGAGGGCAAT+TGG 0.449744 1_1:-72428738 Msa0041860:intron
TCTATAGAATAGAAGAAGTT+GGG 0.462776 1_1:+72431006 None:intergenic
CCATTCACCTCCTTGGCATA+CGG 0.464982 1_1:+72436039 None:intergenic
CACTCCCAACCTATATTGCT+TGG 0.465721 1_1:-72430829 Msa0041860:CDS
GGGAGATGGGCAAGTTATGC+TGG 0.466240 1_1:-72431058 Msa0041860:CDS
GCAGTATCTGGCTTTGGATG+AGG 0.466634 1_1:-72431079 Msa0041860:CDS
CGACCTCCGGCTCTGATGCT+TGG 0.467383 1_1:-72432743 Msa0041860:intron
TCAAGATACCCTGCAGCAAA+TGG 0.469548 1_1:-72429468 Msa0041860:intron
ACTTAAATCTCCTTCACCTT+GGG 0.470138 1_1:-72430236 Msa0041860:CDS
GTTGAAATGTCTAGACAATC+TGG 0.471543 1_1:-72431159 Msa0041860:CDS
GAAATTCCAAGTTGAAGTGT+TGG 0.475026 1_1:-72430173 Msa0041860:CDS
AGCAACATTATAACTCTCTT+CGG 0.478706 1_1:+72429793 None:intergenic
ATGCCAAATTCGCGTGCTCT+AGG 0.479668 1_1:-72431437 Msa0041860:CDS
AGGGGCATAGCTTTCTTTGA+AGG 0.480618 1_1:-72431606 Msa0041860:CDS
GCAATATAGGTTGGGAGTGA+TGG 0.483077 1_1:+72430833 None:intergenic
ACTGGTTGCTTCCCCTAAGA+GGG 0.487153 1_1:-72431625 Msa0041860:CDS
AAATTCCAAGTTGAAGTGTT+GGG 0.488182 1_1:-72430172 Msa0041860:CDS
TTAGGGAACCTGTAGTAGAT+AGG 0.488222 1_1:-72429898 Msa0041860:CDS
CTGGTGGCTGTCAAAACATT+GGG 0.488703 1_1:-72431140 Msa0041860:CDS
GTATTTCAAGCATATTCAAA+AGG 0.489011 1_1:-72431034 Msa0041860:CDS
GTCAAACTGTTCATCTGTCC+AGG 0.491245 1_1:+72430543 None:intergenic
GTGTAGCTGGATGTCAATCT+AGG 0.493252 1_1:-72430150 Msa0041860:CDS
TTCACTCATTGTACGAAGAC+CGG 0.494147 1_1:-72430468 Msa0041860:CDS
CTGGCTTTGGATGAGGGAGA+TGG 0.494760 1_1:-72431072 Msa0041860:CDS
ACTCCAACAAAAGGAGCAAA+AGG 0.494816 1_1:+72430859 None:intergenic
ATCCAATTGTAGCCGGGCTG+CGG 0.496113 1_1:+72431738 None:intergenic
ATCTATTATGTCTGGTATCA+CGG 0.498288 1_1:-72428083 Msa0041860:three_prime_UTR
CACATCCAAGCAATATAGGT+TGG 0.500060 1_1:+72430824 None:intergenic
GTTTCAAATTCAATGCCGTT+AGG 0.501314 1_1:+72431564 None:intergenic
AGCAGGAATCCAATTGTAGC+CGG 0.501519 1_1:+72431731 None:intergenic
CACTTAAATCTCCTTCACCT+TGG 0.501635 1_1:-72430237 Msa0041860:CDS
CGCTGACTACCAACGACCTC+CGG 0.501974 1_1:-72432756 Msa0041860:CDS
AAAATTCAAAATGAACTTGA+CGG 0.502637 1_1:-72428276 Msa0041860:three_prime_UTR
CGAAAATGATATGCCAAAGC+TGG 0.503037 1_1:+72431264 None:intergenic
AGTACCATAATATCCATTAA+GGG 0.503128 1_1:+72429241 None:intergenic
TGATGGTTCACTCCAACAAA+AGG 0.509844 1_1:+72430850 None:intergenic
AGTATTGCGTTGAGTGAAGA+AGG 0.512046 1_1:-72429824 Msa0041860:CDS
GGTGAAGGAGATTTAAGTGC+AGG 0.515427 1_1:+72430241 None:intergenic
GCATCACACGGGTGGTGCAC+TGG 0.518829 1_1:-72431643 Msa0041860:CDS
TTACATGAGGTAAACTTCAA+TGG 0.519199 1_1:+72428360 None:intergenic
CAATCACCTCACAGCTTCTG+AGG 0.522696 1_1:+72428482 None:intergenic
CAGTATCTGGCTTTGGATGA+GGG 0.524524 1_1:-72431078 Msa0041860:CDS
CAAGAGTATGCCAAATCTAT+GGG 0.524696 1_1:-72431516 Msa0041860:CDS
TACAGTAAGTGGCCGCAGCC+CGG 0.528136 1_1:-72431750 Msa0041860:CDS
ACATCCAAGCAATATAGGTT+GGG 0.528400 1_1:+72430825 None:intergenic
CAAAACATTGGGTCAATCAT+GGG 0.529150 1_1:-72431129 Msa0041860:CDS
TCTATGGCTCCGAGCCATGA+TGG 0.529480 1_1:-72428876 Msa0041860:CDS
GGGGCATAGCTTTCTTTGAA+GGG 0.530599 1_1:-72431605 Msa0041860:CDS
TTGTTTGGTTACTGAGGACA+TGG 0.530723 1_1:-72430771 Msa0041860:CDS
TCTTGAGCGTCGACAAGTAC+AGG 0.531111 1_1:+72429485 None:intergenic
TCAACACAGCATGCAAGGCC+TGG 0.531717 1_1:-72429053 Msa0041860:intron
CACTTGAACAACCGCAACGT+TGG 0.534327 1_1:+72429966 None:intergenic
TGGCTTTGGATGAGGGAGAT+GGG 0.535356 1_1:-72431071 Msa0041860:CDS
AAATTCAAAATGAACTTGAC+GGG 0.536740 1_1:-72428275 Msa0041860:three_prime_UTR
AGCTTTCTTTGAAGGGGACA+CGG 0.537323 1_1:-72431598 Msa0041860:CDS
AAACACAAACCATTTGCTGC+AGG 0.538027 1_1:+72429459 None:intergenic
CAAGTGGTGTGGTACTCTAC+CGG 0.541649 1_1:-72432782 Msa0041860:CDS
GAGGACATGGCTTAGAGCGA+TGG 0.543287 1_1:-72430758 Msa0041860:CDS
GAAAAGCAATGACGTACACT+TGG 0.544275 1_1:+72430664 None:intergenic
CTATGGCTCCGAGCCATGAT+GGG 0.544403 1_1:-72428875 Msa0041860:CDS
CTGAAGGCTATATCCAAAAG+TGG 0.546535 1_1:+72428700 None:intergenic
CTACACCCAACACTTCAACT+TGG 0.546709 1_1:+72430167 None:intergenic
CTCGGAGCCATAGAATTCAA+TGG 0.548526 1_1:+72428885 None:intergenic
TATATTGCTTGGATGTGCAT+TGG 0.548998 1_1:-72430818 Msa0041860:CDS
TCTGGTGGCTGTCAAAACAT+TGG 0.549465 1_1:-72431141 Msa0041860:CDS
CTCATTATATCATGAAGAGA+TGG 0.550080 1_1:-72429937 Msa0041860:CDS
GAACACAACAAAGCATTCAT+GGG 0.550109 1_1:-72428845 Msa0041860:CDS
TTCACTCCATCTAAGGTGGA+TGG 0.551670 1_1:+72428226 None:intergenic
AAATTCGCGTGCTCTAGGTA+TGG 0.552712 1_1:-72431432 Msa0041860:CDS
CCTCAGTAACCAAACAAAAG+TGG 0.552907 1_1:+72430777 None:intergenic
AGTGAAACCAAACATCATCA+TGG 0.555179 1_1:+72430485 None:intergenic
CACTCAATGCATGTCTGCAA+AGG 0.555274 1_1:+72429993 None:intergenic
CACTCACCAAGCATCAGAGC+CGG 0.555941 1_1:+72432737 None:intergenic
CTATATCCAAAAGTGGTTGT+CGG 0.558538 1_1:+72428707 None:intergenic
TGTCAATCTAGGACAGAGGT+TGG 0.561454 1_1:-72430139 Msa0041860:CDS
GAACACAACTAGGAAAAGAA+AGG 0.562569 1_1:-72429624 Msa0041860:intron
CCAAAATACCCATCATGGCT+CGG 0.565207 1_1:+72428867 None:intergenic
TCAGCAGAATGTGCAAGGAC+TGG 0.567200 1_1:-72429219 Msa0041860:intron
GTTAATCAACACAGCATGCA+AGG 0.568293 1_1:-72429058 Msa0041860:CDS
GTAAGAAGAGGAACACAACT+AGG 0.569051 1_1:-72429634 Msa0041860:CDS
CTTCAAAACCAAGTAAGAAG+AGG 0.570332 1_1:-72429646 Msa0041860:CDS
TCGTTGGTAGTCAGCGGCGC+CGG 0.570485 1_1:+72432763 None:intergenic
GTGTTCCAAAATACCCATCA+TGG 0.572223 1_1:+72428862 None:intergenic
CTCAGTAACCAAACAAAAGT+GGG 0.573591 1_1:+72430778 None:intergenic
TTTCAAGCATATTCAAAAGG+AGG 0.574379 1_1:-72431031 Msa0041860:CDS
CTCTTCATGATATAATGAGA+TGG 0.574857 1_1:+72429941 None:intergenic
GCAGGAATCCAATTGTAGCC+GGG 0.576667 1_1:+72431732 None:intergenic
GTAAATAACTCTAACGACAA+TGG 0.578738 1_1:-72429731 Msa0041860:CDS
GGGCATAGCTTTCTTTGAAG+GGG 0.579841 1_1:-72431604 Msa0041860:CDS
GGACACAAAGGATACAAACT+AGG 0.580462 1_1:-72429877 Msa0041860:CDS
AGGACATGGCTTAGAGCGAT+GGG 0.585225 1_1:-72430757 Msa0041860:CDS
GAACTGTTGCTGTGAAAGTG+TGG 0.585833 1_1:+72428547 None:intergenic
GGTGCAGAAACTGGCAACAA+TGG 0.585898 1_1:-72429710 Msa0041860:CDS
GCATCAGAGCCGGAGGTCGT+TGG 0.588511 1_1:+72432747 None:intergenic
TCAAATTCAATGCCGTTAGG+TGG 0.590422 1_1:+72431567 None:intergenic
CACACATCATTATAACGTTG+AGG 0.592933 1_1:+72429854 None:intergenic
TGAGGAGGTTCCGTATGCCA+AGG 0.594771 1_1:-72436049 Msa0041860:CDS
TCTAGGACAGAGGTTGGAGA+TGG 0.594905 1_1:-72430133 Msa0041860:CDS
AAAGTTCACTCCATCTAAGG+TGG 0.598830 1_1:+72428222 None:intergenic
AAAGTGGGTACCGACATACA+TGG 0.603217 1_1:-72430443 Msa0041860:CDS
GCTAGTTCATCAAAATGGAA+TGG 0.603258 1_1:-72431711 Msa0041860:CDS
AACACAAACCATTTGCTGCA+GGG 0.603531 1_1:+72429460 None:intergenic
GAAAGCTATGCCCCTCTTAG+GGG 0.607330 1_1:+72431614 None:intergenic
CTGACAAAGTGACAAGGCAT+AGG 0.608799 1_1:+72428045 None:intergenic
GGTACTCAGCAGAATGTGCA+AGG 0.609447 1_1:-72429224 Msa0041860:CDS
CGAGTTATCAGTTTGACAGA+GGG 0.612110 1_1:-72431101 Msa0041860:CDS
TTCTACTAAATGGATACCTG+TGG 0.620219 1_1:+72437744 None:intergenic
TTAATGGAGCCACCTCATGA+TGG 0.620785 1_1:-72429088 Msa0041860:CDS
AACAGTTTGACATGAGATGG+TGG 0.621739 1_1:-72430531 Msa0041860:CDS
AAACTGCATCATTAAAGCTG+AGG 0.622221 1_1:+72430920 None:intergenic
CTGGTTGCTTCCCCTAAGAG+GGG 0.625137 1_1:-72431624 Msa0041860:CDS
GGAGTAACACCTGAGTCTGA+TGG 0.629153 1_1:-72431411 Msa0041860:CDS
AAAAGCAATGACGTACACTT+GGG 0.629160 1_1:+72430665 None:intergenic
ACTGTCGGAACGTTGAGGTG+TGG 0.629360 1_1:+72430396 None:intergenic
CTGCTCCTACCATCAGACTC+AGG 0.632022 1_1:+72431402 None:intergenic
AGTTCATCAAAATGGAATGG+TGG 0.634115 1_1:-72431708 Msa0041860:CDS
AAAGAAAGAGTTCACACTGT+CGG 0.634665 1_1:+72430381 None:intergenic
ACAACAAAGCATTCATGGGA+TGG 0.635224 1_1:-72428841 Msa0041860:intron
CATGGCTTAGAGCGATGGGA+GGG 0.635529 1_1:-72430753 Msa0041860:CDS
TCTTCTGAATAGGTATGATG+AGG 0.638772 1_1:-72430299 Msa0041860:CDS
TTGAGTGTTCTCCAACGTTG+CGG 0.639483 1_1:-72429977 Msa0041860:CDS
CGGAGGTCGTTGGTAGTCAG+CGG 0.640353 1_1:+72432757 None:intergenic
AGTGCAGTGAGTGGAAGTAT+GGG 0.641203 1_1:-72431684 Msa0041860:CDS
GTCAATGAAGAGCATCACAC+GGG 0.641639 1_1:-72431654 Msa0041860:CDS
ATGAACAGTTTGACATGAGA+TGG 0.648940 1_1:-72430534 Msa0041860:CDS
TGGATGTCAATCTAGGACAG+AGG 0.649330 1_1:-72430143 Msa0041860:CDS
AAGTGGGTACCGACATACAT+GGG 0.651329 1_1:-72430442 Msa0041860:CDS
ACATGGCTTAGAGCGATGGG+AGG 0.651552 1_1:-72430754 Msa0041860:CDS
AATGGTGGTAGTGCAGTGAG+TGG 0.652328 1_1:-72431693 Msa0041860:CDS
AAGACATCTCCCATGTATGT+CGG 0.652653 1_1:+72430433 None:intergenic
TCACCAAGCATCAGAGCCGG+AGG 0.654411 1_1:+72432740 None:intergenic
TATAGTTCAAGATTACGAGA+AGG 0.655112 1_1:-72430095 Msa0041860:CDS
TTCACACTGTCGGAACGTTG+AGG 0.659741 1_1:+72430391 None:intergenic
CTATTCTATAGATTTAAACG+AGG 0.660746 1_1:-72430995 Msa0041860:CDS
ACATAGTAACCATCATGAGG+TGG 0.662349 1_1:+72429079 None:intergenic
ACGAGTTATCAGTTTGACAG+AGG 0.665307 1_1:-72431102 Msa0041860:CDS
TGTCAATGAAGAGCATCACA+CGG 0.667976 1_1:-72431655 Msa0041860:CDS
AATGAAGAGCATCACACGGG+TGG 0.670295 1_1:-72431651 Msa0041860:CDS
TAACACCTGAGTCTGATGGT+AGG 0.675623 1_1:-72431407 Msa0041860:CDS
AAATACAGGAAGGTTACATG+AGG 0.676957 1_1:+72428347 None:intergenic
CTGTAGTAGATAGGACACAA+AGG 0.687200 1_1:-72429889 Msa0041860:CDS
CAAGTGATGGTCAAGTGGTG+TGG 0.688613 1_1:-72432793 Msa0041860:CDS
TTAACATAGTAACCATCATG+AGG 0.693243 1_1:+72429076 None:intergenic
GGAGGTTCCGTATGCCAAGG+AGG 0.698000 1_1:-72436046 Msa0041860:intron
TTGGAACGAGTTGAGCTCAG+AGG 0.703393 1_1:-72430053 Msa0041860:CDS
ACAGTTTGACATGAGATGGT+GGG 0.706939 1_1:-72430530 Msa0041860:CDS
AGATTCCATCTACTATATCG+CGG 0.707268 1_1:+72428129 None:intergenic
TAGCTTCCTCAGAAGCTGTG+AGG 0.718551 1_1:-72428488 Msa0041860:three_prime_UTR
ATGGAACATAATGAATACCA+CGG 0.720170 1_1:+72428104 None:intergenic
GAAATGTCTAGACAATCTGG+TGG 0.763154 1_1:-72431156 Msa0041860:CDS
TAGTAGATGGAATCTCACCG+TGG 0.811751 1_1:-72428121 Msa0041860:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATATATATATATATA+GGG - chr1_1:72428375-72428394 Msa0041860:three_prime_UTR 0.0%
!! ATATATATATATATATATAT+GGG + chr1_1:72429999-72430018 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG + chr1_1:72430000-72430019 None:intergenic 0.0%
!! TAATTAATTATTAATTATAA+AGG - chr1_1:72436848-72436867 Msa0041860:intron 0.0%
!!! AGTATTAATATTTATTTTTG+CGG + chr1_1:72428581-72428600 None:intergenic 10.0%
!!! TAATACTTATTTTTTTTTGA+AGG - chr1_1:72428594-72428613 Msa0041860:intron 10.0%
!!! AAAAAATATATTTTGCATTT+TGG - chr1_1:72428871-72428890 Msa0041860:CDS 10.0%
!! TTAACTAATAATAGAATTAA+AGG + chr1_1:72429111-72429130 None:intergenic 10.0%
!! TTAATTCTATTATTAGTTAA+TGG - chr1_1:72429111-72429130 Msa0041860:intron 10.0%
!!! AGATAATTATTTTTTTTTGT+TGG - chr1_1:72429325-72429344 Msa0041860:intron 10.0%
!! TAATAATAATAATAATCGTT+AGG - chr1_1:72429450-72429469 Msa0041860:intron 10.0%
!! AATAATAATAATAATCGTTA+GGG - chr1_1:72429451-72429470 Msa0041860:intron 10.0%
!! TTAATTCTAATATCAATTAA+TGG + chr1_1:72429921-72429940 None:intergenic 10.0%
!! TTAATTGATATTAGAATTAA+AGG - chr1_1:72429921-72429940 Msa0041860:CDS 10.0%
!! ATATATATATATATATAGAG+CGG - chr1_1:72430017-72430036 Msa0041860:CDS 10.0%
!!! TTTTTTATAATTTTTTGTAG+AGG - chr1_1:72431958-72431977 Msa0041860:intron 10.0%
!!! TTTTTATAATTTTTTGTAGA+GGG - chr1_1:72431959-72431978 Msa0041860:intron 10.0%
!! CATAAAATTCAAAATATTAT+AGG - chr1_1:72432094-72432113 Msa0041860:intron 10.0%
!! ATACTAATAATTATTAGATA+AGG - chr1_1:72432333-72432352 Msa0041860:intron 10.0%
!! AAAATTTCAAAATTGAATTA+TGG + chr1_1:72433407-72433426 None:intergenic 10.0%
!! ATATATATATATATATAGGG+AGG - chr1_1:72428378-72428397 Msa0041860:three_prime_UTR 15.0%
!! ATATTAATATTACACAAACA+CGG + chr1_1:72428814-72428833 None:intergenic 15.0%
!!! CTGTTTTTTTTTTTTTTACA+TGG + chr1_1:72429423-72429442 None:intergenic 15.0%
!! CATGTAAAAAAAAAAAAAAC+AGG - chr1_1:72429421-72429440 Msa0041860:intron 15.0%
!!! ATAAAATTGATTTCAAATCA+CGG + chr1_1:72429570-72429589 None:intergenic 15.0%
!!! TGATTTGAAATCAATTTTAT+TGG - chr1_1:72429570-72429589 Msa0041860:intron 15.0%
!!! TTACGAATCAATTTTTTTTT+AGG + chr1_1:72429659-72429678 None:intergenic 15.0%
!!! ATTAAAATCATTGATTGTTT+TGG - chr1_1:72429830-72429849 Msa0041860:CDS 15.0%
!!! TTAAAATCATTGATTGTTTT+GGG - chr1_1:72429831-72429850 Msa0041860:CDS 15.0%
!! TATATATATATATATAGAGC+GGG - chr1_1:72430018-72430037 Msa0041860:CDS 15.0%
!!! AGGTTTTTTTTTTTTTTTTG+TGG - chr1_1:72430306-72430325 Msa0041860:CDS 15.0%
!!! TTTTTTTTTTTTTTTTGTGG+TGG - chr1_1:72430309-72430328 Msa0041860:CDS 15.0%
!! AAACAATATTGGTAAAAAAT+TGG - chr1_1:72430531-72430550 Msa0041860:CDS 15.0%
!!! ATGACATTTTTGTATAATAA+TGG + chr1_1:72431191-72431210 None:intergenic 15.0%
!!! AATCTAATAGTTTTCTTTAA+AGG + chr1_1:72431322-72431341 None:intergenic 15.0%
!! AGTTATTATATTCATTAAGT+TGG - chr1_1:72431345-72431364 Msa0041860:CDS 15.0%
!!! TTTGAATTTTATGATTTGAA+CGG + chr1_1:72432087-72432106 None:intergenic 15.0%
!! AATAATTATTAGATAAGGTT+AGG - chr1_1:72432338-72432357 Msa0041860:intron 15.0%
!! ATAATTATTAGATAAGGTTA+GGG - chr1_1:72432339-72432358 Msa0041860:intron 15.0%
!! CAGTATCTATTATTAAAAAA+TGG - chr1_1:72432633-72432652 Msa0041860:intron 15.0%
!!! GAAATTATGTTTCTAAATAA+TGG + chr1_1:72432911-72432930 None:intergenic 15.0%
!!! GAAAATTATGTTTTAATGAA+TGG + chr1_1:72432987-72433006 None:intergenic 15.0%
!!! ATAATTTTCAATGTAAATCA+TGG - chr1_1:72432998-72433017 Msa0041860:intron 15.0%
!!! TAATTTTCAATGTAAATCAT+GGG - chr1_1:72432999-72433018 Msa0041860:intron 15.0%
!! ATTATTATTACGCTTATTTA+TGG - chr1_1:72433596-72433615 Msa0041860:intron 15.0%
!! ATAATGTTAACATATACTTA+AGG + chr1_1:72433948-72433967 None:intergenic 15.0%
!!! GAACATTTTTGAATTTATAA+AGG - chr1_1:72434523-72434542 Msa0041860:intron 15.0%
!!! AACGTTTAAGAAATATATTT+TGG - chr1_1:72434861-72434880 Msa0041860:intron 15.0%
!!! ACGTTTAAGAAATATATTTT+GGG - chr1_1:72434862-72434881 Msa0041860:intron 15.0%
!!! TAATATTTATTTTTGCGGTT+CGG + chr1_1:72428576-72428595 None:intergenic 20.0%
!!! ATGTGATTTTTATTTTGGAT+CGG - chr1_1:72428987-72429006 Msa0041860:intron 20.0%
!!! ATTAATTGTTTTGCCATTTT+GGG + chr1_1:72429208-72429227 None:intergenic 20.0%
!! TTGTGTATAAAAAAAGCAAA+GGG + chr1_1:72429262-72429281 None:intergenic 20.0%
!! TTTGTGTATAAAAAAAGCAA+AGG + chr1_1:72429263-72429282 None:intergenic 20.0%
!!! GGTTTAATTATTTTCTTAAC+TGG - chr1_1:72429477-72429496 Msa0041860:CDS 20.0%
!!! TTAAATTATAAGTGTCATTG+AGG - chr1_1:72429687-72429706 Msa0041860:CDS 20.0%
!! TTGATTCATAACAATTGATA+TGG + chr1_1:72429892-72429911 None:intergenic 20.0%
!! ATATATATATATATAGAGCG+GGG - chr1_1:72430019-72430038 Msa0041860:CDS 20.0%
!! TAATAACTAAAAATAAACGG+AGG + chr1_1:72430281-72430300 None:intergenic 20.0%
!! AACAATGCATAATATATGTA+AGG + chr1_1:72430353-72430372 None:intergenic 20.0%
!!! AATAAGCATTAAGGATTTTA+TGG + chr1_1:72430457-72430476 None:intergenic 20.0%
!! AAATGAGATAATAAGCATTA+AGG + chr1_1:72430466-72430485 None:intergenic 20.0%
!! GTATATTGACAAAACAATAT+TGG - chr1_1:72430520-72430539 Msa0041860:CDS 20.0%
!!! CTTAATCTTATTTTCTTTCT+CGG - chr1_1:72430936-72430955 Msa0041860:CDS 20.0%
!!! TGTATAATAATGGAAGATTA+GGG + chr1_1:72431181-72431200 None:intergenic 20.0%
!!! TTGTATAATAATGGAAGATT+AGG + chr1_1:72431182-72431201 None:intergenic 20.0%
!!! CAATGACTAATTTTTATCAA+AGG + chr1_1:72431583-72431602 None:intergenic 20.0%
!! TAATAGTGAATTTGATCATA+TGG - chr1_1:72431608-72431627 Msa0041860:CDS 20.0%
!! TAACATTTATCTTCTAAGTA+TGG - chr1_1:72431873-72431892 Msa0041860:intron 20.0%
!! TATGCGATAATTATAGAAAT+TGG + chr1_1:72432273-72432292 None:intergenic 20.0%
!! ATTAATAAATTTAAGCAACG+TGG + chr1_1:72432540-72432559 None:intergenic 20.0%
!! AAAATGCAATTCTTAAACTT+TGG + chr1_1:72435262-72435281 None:intergenic 20.0%
!! TTAGATTATACAAATAAGCA+TGG - chr1_1:72436419-72436438 Msa0041860:intron 20.0%
!!! TGCTTAATAGATTGTAATTT+TGG - chr1_1:72436695-72436714 Msa0041860:intron 20.0%
!! AGAAGATTATATTCATGATT+AGG + chr1_1:72436811-72436830 None:intergenic 20.0%
!! TACTTTCCTATGAAATTATT+GGG - chr1_1:72437017-72437036 Msa0041860:intron 20.0%
!! TAATTTCCCAATAATTTCAT+AGG + chr1_1:72437026-72437045 None:intergenic 20.0%
!! CTAATAAGTAACTAAGTATA+CGG + chr1_1:72437174-72437193 None:intergenic 20.0%
!! CAATTTCTATGTAAAAATAC+AGG + chr1_1:72437500-72437519 None:intergenic 20.0%
!! AAAATTCAAAATGAACTTGA+CGG - chr1_1:72437554-72437573 Msa0041860:intron 20.0%
!! ATATTCAGAAGAAATGAAAT+TGG + chr1_1:72437668-72437687 None:intergenic 20.0%
! ATATATATATAGGGAGGATT+AGG - chr1_1:72428384-72428403 Msa0041860:three_prime_UTR 25.0%
! TATATATATAGGGAGGATTA+GGG - chr1_1:72428385-72428404 Msa0041860:three_prime_UTR 25.0%
!!! CAAATATATTCGGTTTTTTG+CGG + chr1_1:72428470-72428489 None:intergenic 25.0%
! CAAATATATGCGGTTTAATT+TGG + chr1_1:72428913-72428932 None:intergenic 25.0%
! CAAATTAAACCGCATATATT+TGG - chr1_1:72428911-72428930 Msa0041860:intron 25.0%
! TCCAAAATAAAAATCACATG+CGG + chr1_1:72428986-72429005 None:intergenic 25.0%
!! AGTTTGTTTACTTCAAATCT+TGG - chr1_1:72429085-72429104 Msa0041860:CDS 25.0%
!!! GCTTTATTTTTCTTCTCTAT+TGG - chr1_1:72429166-72429185 Msa0041860:intron 25.0%
!!! TTAATTGTTTTGCCATTTTG+GGG + chr1_1:72429207-72429226 None:intergenic 25.0%
!!! CATTAATTGTTTTGCCATTT+TGG + chr1_1:72429209-72429228 None:intergenic 25.0%
! ACACAAAAATTAATACAGCA+AGG - chr1_1:72429276-72429295 Msa0041860:intron 25.0%
! TTCAAGAATTGAAAAAGGAA+GGG - chr1_1:72429742-72429761 Msa0041860:CDS 25.0%
! TAGAATTAAAGGTCAAGATT+TGG - chr1_1:72429932-72429951 Msa0041860:CDS 25.0%
! TAAGTTATTACACTTACTCT+TGG - chr1_1:72429957-72429976 Msa0041860:CDS 25.0%
! TATATATATATATAGAGCGG+GGG - chr1_1:72430020-72430039 Msa0041860:CDS 25.0%
! ATAAGATTAAGAGATGTTGA+AGG + chr1_1:72430927-72430946 None:intergenic 25.0%
! AGATTGAAAAGACAATAACT+TGG + chr1_1:72431002-72431021 None:intergenic 25.0%
!!! ATCTATACCTGTTGATTTAA+AGG - chr1_1:72431094-72431113 Msa0041860:CDS 25.0%
! TCTTGATTACAATATTTCCA+TGG - chr1_1:72431282-72431301 Msa0041860:CDS 25.0%
! TATGAAAAAGTTTAACCTGA+AGG - chr1_1:72431529-72431548 Msa0041860:CDS 25.0%
! ATGAAAAAGTTTAACCTGAA+GGG - chr1_1:72431530-72431549 Msa0041860:CDS 25.0%
!!! TAAACTCTCTTTATTTTTCC+CGG - chr1_1:72431663-72431682 Msa0041860:CDS 25.0%
! GTTTGATTCAATAAGAGAAT+GGG + chr1_1:72431752-72431771 None:intergenic 25.0%
! AGTTTGATTCAATAAGAGAA+TGG + chr1_1:72431753-72431772 None:intergenic 25.0%
! TTATTGAATCAAACTTGTGT+GGG - chr1_1:72431758-72431777 Msa0041860:CDS 25.0%
! GAAATGAATATCACATAAAC+TGG - chr1_1:72431793-72431812 Msa0041860:CDS 25.0%
! TCCAAAATATTATAGAGTGT+TGG - chr1_1:72432037-72432056 Msa0041860:intron 25.0%
!! TCCAACACTCTATAATATTT+TGG + chr1_1:72432041-72432060 None:intergenic 25.0%
! TAAGGCTGATTATACATAAT+AGG + chr1_1:72432201-72432220 None:intergenic 25.0%
!! CAAGTTGGAGATTAAATATA+GGG + chr1_1:72432239-72432258 None:intergenic 25.0%
!! ACAAGTTGGAGATTAAATAT+AGG + chr1_1:72432240-72432259 None:intergenic 25.0%
!!! AATCTCCAACTTGTATTTTT+TGG - chr1_1:72432246-72432265 Msa0041860:intron 25.0%
!!! AATAAGTTTTAGCATAGAAC+CGG + chr1_1:72432577-72432596 None:intergenic 25.0%
! TGTCAAAATTAATGAAGAAG+AGG + chr1_1:72432766-72432785 None:intergenic 25.0%
!!! AGAATTTTAGAGAGAGAAAA+GGG + chr1_1:72432827-72432846 None:intergenic 25.0%
!!! AAGAATTTTAGAGAGAGAAA+AGG + chr1_1:72432828-72432847 None:intergenic 25.0%
! TTCTAATTAAGTAGTGTTAC+AGG + chr1_1:72433197-72433216 None:intergenic 25.0%
! ACTTAATTAGAATAATGACG+TGG - chr1_1:72433205-72433224 Msa0041860:intron 25.0%
! ACAACAAAATTAGTAGTAAC+AGG - chr1_1:72433301-72433320 Msa0041860:intron 25.0%
! AATTGAATTATGGATGAGAT+CGG + chr1_1:72433397-72433416 None:intergenic 25.0%
! TGAAGATAATTGTAGCATAA+AGG - chr1_1:72433678-72433697 Msa0041860:intron 25.0%
!! TTTTAATGACTAGAGTTTGA+TGG - chr1_1:72434023-72434042 Msa0041860:intron 25.0%
! TTTGGCATCAATAAATTCTT+TGG + chr1_1:72434381-72434400 None:intergenic 25.0%
! ACATTTCAACATACATCTTT+CGG + chr1_1:72434661-72434680 None:intergenic 25.0%
! GTATTTCAAGCATATTCAAA+AGG - chr1_1:72434796-72434815 Msa0041860:intron 25.0%
! TCTATAGAATAGAAGAAGTT+GGG + chr1_1:72434827-72434846 None:intergenic 25.0%
! ATCTATAGAATAGAAGAAGT+TGG + chr1_1:72434828-72434847 None:intergenic 25.0%
! CTATTCTATAGATTTAAACG+AGG - chr1_1:72434835-72434854 Msa0041860:intron 25.0%
! ATAGGTTAATTCTTCTGAAT+AGG - chr1_1:72435521-72435540 Msa0041860:intron 25.0%
!! TTTCTAGCATTTAAAAGATC+AGG - chr1_1:72436278-72436297 Msa0041860:intron 25.0%
! AGTACCATAATATCCATTAA+GGG + chr1_1:72436592-72436611 None:intergenic 25.0%
! AGAACATTGTAATCATTTGA+TGG + chr1_1:72436653-72436672 None:intergenic 25.0%
! ATTGATATTCATATCGTTGT+AGG - chr1_1:72436920-72436939 Msa0041860:intron 25.0%
! TTGATATTCATATCGTTGTA+GGG - chr1_1:72436921-72436940 Msa0041860:intron 25.0%
! GTACTTTCCTATGAAATTAT+TGG - chr1_1:72437016-72437035 Msa0041860:intron 25.0%
! TACTTATTAGCATTTGAACT+TGG - chr1_1:72437184-72437203 Msa0041860:intron 25.0%
!! TGAATAGAATAATTTGTGCT+TGG - chr1_1:72437212-72437231 Msa0041860:intron 25.0%
! AATTTGTCTCTTCTTTGATA+TGG - chr1_1:72437319-72437338 Msa0041860:intron 25.0%
! AAAAGAGAATTGAAAGAACT+TGG - chr1_1:72437371-72437390 Msa0041860:intron 25.0%
! TTCTATGTAAAAATACAGGA+AGG + chr1_1:72437496-72437515 None:intergenic 25.0%
! TACTTTACCTAGATTTCAAT+GGG + chr1_1:72437523-72437542 None:intergenic 25.0%
! AAATTCAAAATGAACTTGAC+GGG - chr1_1:72437555-72437574 Msa0041860:intron 25.0%
TTCAACTATAATCGAGTTTC+AGG - chr1_1:72428217-72428236 Msa0041860:three_prime_UTR 30.0%
AAAGATGAAAATTGTGTTCG+AGG - chr1_1:72428281-72428300 Msa0041860:three_prime_UTR 30.0%
AAGATGAAAATTGTGTTCGA+GGG - chr1_1:72428282-72428301 Msa0041860:three_prime_UTR 30.0%
! CTTTTATTACCGTAGGAAAA+AGG + chr1_1:72428351-72428370 None:intergenic 30.0%
! CTTTTTCCTACGGTAATAAA+AGG - chr1_1:72428349-72428368 Msa0041860:three_prime_UTR 30.0%
! ATTCATCCTTTTATTACCGT+AGG + chr1_1:72428358-72428377 None:intergenic 30.0%
ATATATATAGGGAGGATTAG+GGG - chr1_1:72428386-72428405 Msa0041860:three_prime_UTR 30.0%
!!! TTTGCGGTTTTATTTTGGAT+CGG + chr1_1:72428426-72428445 None:intergenic 30.0%
CGCAAAAAACCGAATATATT+TGG - chr1_1:72428468-72428487 Msa0041860:three_prime_UTR 30.0%
CAAACGCATCCAAATATATT+CGG + chr1_1:72428480-72428499 None:intergenic 30.0%
TTTGTAAAAACCGCTAAGAT+CGG - chr1_1:72428508-72428527 Msa0041860:three_prime_UTR 30.0%
CACAAACACGGTAAAATAAT+AGG + chr1_1:72428802-72428821 None:intergenic 30.0%
!!! GTTTAATTTGGATCGGTTTT+TGG + chr1_1:72428901-72428920 None:intergenic 30.0%
!! ATATGCGGTTTAATTTGGAT+CGG + chr1_1:72428908-72428927 None:intergenic 30.0%
TAAACCGCATATATTTGGAT+CGG - chr1_1:72428916-72428935 Msa0041860:intron 30.0%
AATAAAAATCACATGCGGTT+CGG + chr1_1:72428981-72429000 None:intergenic 30.0%
!! ACCGCATGTGATTTTTATTT+TGG - chr1_1:72428982-72429001 Msa0041860:intron 30.0%
GAAGTAAACAAACTTACTCT+TGG + chr1_1:72429079-72429098 None:intergenic 30.0%
TAATAATAATCGTTAGGGTG+AGG - chr1_1:72429456-72429475 Msa0041860:intron 30.0%
TAACACAACGAAACATTTAC+TGG - chr1_1:72429508-72429527 Msa0041860:intron 30.0%
! ATTGATTTCAAATCACGGAA+GGG + chr1_1:72429565-72429584 None:intergenic 30.0%
! AATTGATTTCAAATCACGGA+AGG + chr1_1:72429566-72429585 None:intergenic 30.0%
! AATTATAAGTGTCATTGAGG+AGG - chr1_1:72429690-72429709 Msa0041860:CDS 30.0%
TGCTTGTGGATAATTATTGT+AGG - chr1_1:72429718-72429737 Msa0041860:CDS 30.0%
TAGGCTTCAAGAATTGAAAA+AGG - chr1_1:72429737-72429756 Msa0041860:CDS 30.0%
CTTCAAGAATTGAAAAAGGA+AGG - chr1_1:72429741-72429760 Msa0041860:CDS 30.0%
!! TTTTGCTATATAACTCGATC+CGG - chr1_1:72430174-72430193 Msa0041860:CDS 30.0%
CATGTCTAGGTAAATTTCAA+AGG - chr1_1:72430208-72430227 Msa0041860:CDS 30.0%
TCTAGGTAAATTTCAAAGGT+TGG - chr1_1:72430212-72430231 Msa0041860:CDS 30.0%
TGCATAATATATGTAAGGTC+CGG + chr1_1:72430348-72430367 None:intergenic 30.0%
! AAGCATTAAGGATTTTATGG+AGG + chr1_1:72430454-72430473 None:intergenic 30.0%
TTGGTAAAAAATTGGAGATC+AGG - chr1_1:72430539-72430558 Msa0041860:CDS 30.0%
TGGTAAAAAATTGGAGATCA+GGG - chr1_1:72430540-72430559 Msa0041860:CDS 30.0%
! TTTATGAAGTGTCAACTCAA+CGG + chr1_1:72430618-72430637 None:intergenic 30.0%
! TTCATTTTAAATTGTCCTCG+TGG + chr1_1:72430713-72430732 None:intergenic 30.0%
!!! ATCACTTTTGAGTTTTCTTG+TGG + chr1_1:72430782-72430801 None:intergenic 30.0%
! CTTTTCAATCTTGATCGATT+AGG - chr1_1:72431011-72431030 Msa0041860:CDS 30.0%
AAAGTAAACATAGGTCAAGA+TGG + chr1_1:72431045-72431064 None:intergenic 30.0%
TCTTGACCTATGTTTACTTT+CGG - chr1_1:72431045-72431064 Msa0041860:CDS 30.0%
TTATTCCCGAAAGTAAACAT+AGG + chr1_1:72431054-72431073 None:intergenic 30.0%
ATTTAAAGGTCTGCTCATTT+AGG - chr1_1:72431108-72431127 Msa0041860:CDS 30.0%
TTTAAAGGTCTGCTCATTTA+GGG - chr1_1:72431109-72431128 Msa0041860:CDS 30.0%
AGGATGAATATCATAAACCA+TGG + chr1_1:72431302-72431321 None:intergenic 30.0%
! TTTTTCATATGCAAGAGTCA+TGG + chr1_1:72431518-72431537 None:intergenic 30.0%
ATCAATCTTATGTGTCAAAC+AGG - chr1_1:72431557-72431576 Msa0041860:CDS 30.0%
CTTATTGAATCAAACTTGTG+TGG - chr1_1:72431757-72431776 Msa0041860:CDS 30.0%
TCATTCGAATCAGATGTAAA+AGG + chr1_1:72432012-72432031 None:intergenic 30.0%
TTGGTCCAAAAAATACAAGT+TGG + chr1_1:72432254-72432273 None:intergenic 30.0%
! AATAAGTACATGTTGGTTGA+AGG + chr1_1:72432737-72432756 None:intergenic 30.0%
GACAGATAATAAGTACATGT+TGG + chr1_1:72432744-72432763 None:intergenic 30.0%
TCAAACTTAAATCATCCATG+TGG - chr1_1:72432794-72432813 Msa0041860:CDS 30.0%
! TTTTCAATGTAAATCATGGG+AGG - chr1_1:72433002-72433021 Msa0041860:intron 30.0%
AATTTAGAAACAAGTTGTGC+CGG - chr1_1:72433168-72433187 Msa0041860:intron 30.0%
!!! AGCTAGGGTTTTGAAATTTT+GGG + chr1_1:72433432-72433451 None:intergenic 30.0%
!!! AAGCTAGGGTTTTGAAATTT+TGG + chr1_1:72433433-72433452 None:intergenic 30.0%
AAAGAAGAAACCTTAAAGAG+CGG + chr1_1:72433528-72433547 None:intergenic 30.0%
ATGTGAAGAACAAAACACAA+GGG + chr1_1:72433560-72433579 None:intergenic 30.0%
AATGTGAAGAACAAAACACA+AGG + chr1_1:72433561-72433580 None:intergenic 30.0%
TTACGCTTATTTATGGTTTG+TGG - chr1_1:72433603-72433622 Msa0041860:intron 30.0%
AACGTGAATTATGAATGTAG+AGG - chr1_1:72433801-72433820 Msa0041860:intron 30.0%
TTCTAACTGTTTCCAAACAT+GGG + chr1_1:72433870-72433889 None:intergenic 30.0%
ATTCTAACTGTTTCCAAACA+TGG + chr1_1:72433871-72433890 None:intergenic 30.0%
!!! ATGCACTCTTATTTTTTGTC+TGG - chr1_1:72433981-72434000 Msa0041860:intron 30.0%
!! GCTAATTGGAAACTTTGTTT+TGG - chr1_1:72434050-72434069 Msa0041860:intron 30.0%
CATTTCAACATACATCTTTC+GGG + chr1_1:72434660-72434679 None:intergenic 30.0%
TTTCAAGCATATTCAAAAGG+AGG - chr1_1:72434799-72434818 Msa0041860:intron 30.0%
!!! CTTATCGTTGCTTTTTATGT+AGG + chr1_1:72434948-72434967 None:intergenic 30.0%
TGATCAGTGACTATAACTTT+GGG + chr1_1:72435109-72435128 None:intergenic 30.0%
TTGATCAGTGACTATAACTT+TGG + chr1_1:72435110-72435129 None:intergenic 30.0%
! CTTTTCTCTTTGTCACATAT+TGG - chr1_1:72435183-72435202 Msa0041860:intron 30.0%
! ATCACAAAAGACAGATTTTC+AGG + chr1_1:72435217-72435236 None:intergenic 30.0%
!!! AGAATTGCATTTTTAAGTCC+TGG - chr1_1:72435269-72435288 Msa0041860:intron 30.0%
CTGTTTCACAAACTCTTTAA+GGG + chr1_1:72435500-72435519 None:intergenic 30.0%
ACTGTTTCACAAACTCTTTA+AGG + chr1_1:72435501-72435520 None:intergenic 30.0%
AAGAGTTTGTGAAACAGTAT+AGG - chr1_1:72435503-72435522 Msa0041860:intron 30.0%
! AAATTCCAAGTTGAAGTGTT+GGG - chr1_1:72435658-72435677 Msa0041860:intron 30.0%
TATAGTTCAAGATTACGAGA+AGG - chr1_1:72435735-72435754 Msa0041860:intron 30.0%
!!! ATGAAGAGTTTTTGGTAACT+TGG - chr1_1:72435758-72435777 Msa0041860:intron 30.0%
! TGTCGATTGTTCGAATATAA+AGG - chr1_1:72435811-72435830 Msa0041860:intron 30.0%
CTCTTCATGATATAATGAGA+TGG + chr1_1:72435892-72435911 None:intergenic 30.0%
CTCATTATATCATGAAGAGA+TGG - chr1_1:72435893-72435912 Msa0041860:intron 30.0%
AGCAACATTATAACTCTCTT+CGG + chr1_1:72436040-72436059 None:intergenic 30.0%
GTAAATAACTCTAACGACAA+TGG - chr1_1:72436099-72436118 Msa0041860:intron 30.0%
TGATACGAGAATCACTTTAT+AGG - chr1_1:72436305-72436324 Msa0041860:intron 30.0%
CAGATCATGAATGAAAAAAG+AGG + chr1_1:72436397-72436416 None:intergenic 30.0%
ATAGAAATGCAATTCTCAAG+AGG + chr1_1:72436454-72436473 None:intergenic 30.0%
!!! CTTTTAGGATAATCTTAGCT+CGG - chr1_1:72436557-72436576 Msa0041860:intron 30.0%
! ATTGCCCTTAATGGATATTA+TGG - chr1_1:72436585-72436604 Msa0041860:intron 30.0%
GAGTACCATAATATCCATTA+AGG + chr1_1:72436593-72436612 None:intergenic 30.0%
TTAACATAGTAACCATCATG+AGG + chr1_1:72436757-72436776 None:intergenic 30.0%
!! TGATACAAGTTTGCTAACTA+TGG - chr1_1:72437065-72437084 Msa0041860:intron 30.0%
!! GATACAAGTTTGCTAACTAT+GGG - chr1_1:72437066-72437085 Msa0041860:intron 30.0%
TTGCACATAACCTTAATTGT+AGG - chr1_1:72437249-72437268 Msa0041860:intron 30.0%
TTACATGAGGTAAACTTCAA+TGG + chr1_1:72437473-72437492 None:intergenic 30.0%
GTACTTTACCTAGATTTCAA+TGG + chr1_1:72437524-72437543 None:intergenic 30.0%
ATAAAAGTTCACTCCATCTA+AGG + chr1_1:72437614-72437633 None:intergenic 30.0%
ATGGAACATAATGAATACCA+CGG + chr1_1:72437729-72437748 None:intergenic 30.0%
TATGTTCCATCTATTATGTC+TGG - chr1_1:72437739-72437758 Msa0041860:CDS 30.0%
ATCTATTATGTCTGGTATCA+CGG - chr1_1:72437747-72437766 Msa0041860:CDS 30.0%
GTAATGAGAGAAAAATCCAC+AGG - chr1_1:72428070-72428089 Msa0041860:three_prime_UTR 35.0%
TTCTACTAAATGGATACCTG+TGG + chr1_1:72428089-72428108 None:intergenic 35.0%
GCTTCTTCTGTTCTACTAAA+TGG + chr1_1:72428099-72428118 None:intergenic 35.0%
TAGAACAGAAGAAGCCATAA+AGG - chr1_1:72428104-72428123 Msa0041860:three_prime_UTR 35.0%
AGAAGCCATAAAGGTAACAT+AGG - chr1_1:72428113-72428132 Msa0041860:three_prime_UTR 35.0%
CGTTTCCTATGTTACCTTTA+TGG + chr1_1:72428121-72428140 None:intergenic 35.0%
AGATGAAAATTGTGTTCGAG+GGG - chr1_1:72428283-72428302 Msa0041860:three_prime_UTR 35.0%
! TGTAGTATGCCTTTTTCCTA+CGG - chr1_1:72428339-72428358 Msa0041860:three_prime_UTR 35.0%
!!! GGTTTTATTTTGGATCGGTT+TGG + chr1_1:72428421-72428440 None:intergenic 35.0%
!!! ATCGGTTTGCGGTTTTATTT+TGG + chr1_1:72428431-72428450 None:intergenic 35.0%
!!! GGTTTTCGGTTTTTTTGGAT+CGG + chr1_1:72428449-72428468 None:intergenic 35.0%
! TTTGCGGTTTTCGGTTTTTT+TGG + chr1_1:72428454-72428473 None:intergenic 35.0%
!!! ATTCGGTTTTTTGCGGTTTT+CGG + chr1_1:72428463-72428482 None:intergenic 35.0%
CGAATATATTTGGATGCGTT+TGG - chr1_1:72428478-72428497 Msa0041860:three_prime_UTR 35.0%
!!! TTTATTTTTGCGGTTCGGTT+CGG + chr1_1:72428571-72428590 None:intergenic 35.0%
GTGCTTGTAAGAGAAAAGAA+AGG - chr1_1:72429374-72429393 Msa0041860:intron 35.0%
AAACATTTACTGGCGCAAAA+GGG - chr1_1:72429518-72429537 Msa0041860:intron 35.0%
! GGATAACTTTTGTCTTTGTG+AGG - chr1_1:72429763-72429782 Msa0041860:CDS 35.0%
! TAACTTTTGTCTTTGTGAGG+AGG - chr1_1:72429766-72429785 Msa0041860:CDS 35.0%
!!! TTTTTTTCCATTCACCTCCT+TGG + chr1_1:72429801-72429820 None:intergenic 35.0%
! TTTGCTATATAACTCGATCC+GGG - chr1_1:72430175-72430194 Msa0041860:CDS 35.0%
! GCTTGATTTTGTAACCTTGA+AGG + chr1_1:72430590-72430609 None:intergenic 35.0%
GAAAGAAAAAATCTACCACG+AGG - chr1_1:72430695-72430714 Msa0041860:CDS 35.0%
CTTGACCTATGTTTACTTTC+GGG - chr1_1:72431046-72431065 Msa0041860:CDS 35.0%
! TAAGATTGATTAGTCCCTTC+AGG + chr1_1:72431547-72431566 None:intergenic 35.0%
AGAGTTTAGACACTAAGTGT+TGG + chr1_1:72431651-72431670 None:intergenic 35.0%
TACCTTCTTGAAGAGAAACT+TGG + chr1_1:72431926-72431945 None:intergenic 35.0%
TCGAATCAGATGTAAAAGGT+TGG + chr1_1:72432008-72432027 None:intergenic 35.0%
AGATAAGGTTAGGGAAAGAA+AGG - chr1_1:72432348-72432367 Msa0041860:intron 35.0%
TTAATCACTCACCTGTTAAC+CGG - chr1_1:72432555-72432574 Msa0041860:intron 35.0%
AAATTAACGATGAAGCCACA+GGG + chr1_1:72432697-72432716 None:intergenic 35.0%
AAAATTAACGATGAAGCCAC+AGG + chr1_1:72432698-72432717 None:intergenic 35.0%
! GATCTAGTCTTTGATGTGTA+AGG + chr1_1:72432877-72432896 None:intergenic 35.0%
TCTATAGTGAGAACGATTGT+TGG + chr1_1:72432947-72432966 None:intergenic 35.0%
!! GAGAGTAGTTTTACAAGTGA+TGG - chr1_1:72433024-72433043 Msa0041860:intron 35.0%
! TTTTACAAGTGATGGTCAAG+TGG - chr1_1:72433032-72433051 Msa0041860:intron 35.0%
TAGCATCACTCACACAAAAA+AGG - chr1_1:72433277-72433296 Msa0041860:intron 35.0%
AGCATCACTCACACAAAAAA+GGG - chr1_1:72433278-72433297 Msa0041860:intron 35.0%
!!! GCTAGGGTTTTGAAATTTTG+GGG + chr1_1:72433431-72433450 None:intergenic 35.0%
CGAGTACGAAAAATATGAAG+TGG + chr1_1:72433488-72433507 None:intergenic 35.0%
!! TCATTTTTCACCGCTCTTTA+AGG - chr1_1:72433515-72433534 Msa0041860:intron 35.0%
! TATGGTTTGTGGAAAATGCT+TGG - chr1_1:72433614-72433633 Msa0041860:intron 35.0%
TGGAATGCTAAAACATGATG+CGG - chr1_1:72433634-72433653 Msa0041860:intron 35.0%
GTGAATTATGAATGTAGAGG+TGG - chr1_1:72433804-72433823 Msa0041860:intron 35.0%
! AGTTTGATGGTTTCGCTAAT+TGG - chr1_1:72434036-72434055 Msa0041860:intron 35.0%
! TTGGTGCATTTTACAGTAAG+TGG - chr1_1:72434069-72434088 Msa0041860:intron 35.0%
TTCCTGCTAGTTCATCAAAA+TGG - chr1_1:72434114-72434133 Msa0041860:intron 35.0%
!! TTCCATTTTGATGAACTAGC+AGG + chr1_1:72434119-72434138 None:intergenic 35.0%
GCTAGTTCATCAAAATGGAA+TGG - chr1_1:72434119-72434138 Msa0041860:intron 35.0%
AGTTCATCAAAATGGAATGG+TGG - chr1_1:72434122-72434141 Msa0041860:intron 35.0%
GTTTCAAATTCAATGCCGTT+AGG + chr1_1:72434269-72434288 None:intergenic 35.0%
! TCAAGAGTATGCCAAATCTA+TGG - chr1_1:72434313-72434332 Msa0041860:intron 35.0%
! CAAGAGTATGCCAAATCTAT+GGG - chr1_1:72434314-72434333 Msa0041860:intron 35.0%
!!! TCTGCTGTTTTTAATGGAAG+TGG + chr1_1:72434345-72434364 None:intergenic 35.0%
!!! TGATCGTCTGCTGTTTTTAA+TGG + chr1_1:72434351-72434370 None:intergenic 35.0%
AAATGTTCCATTTCCCATCT+GGG + chr1_1:72434511-72434530 None:intergenic 35.0%
AAAATGTTCCATTTCCCATC+TGG + chr1_1:72434512-72434531 None:intergenic 35.0%
! TCATGAACTTTTACCAGCTT+TGG - chr1_1:72434553-72434572 Msa0041860:intron 35.0%
!! CAGCTTTGGCATATCATTTT+CGG - chr1_1:72434567-72434586 Msa0041860:intron 35.0%
! GCATATCATTTTCGGATTCA+TGG - chr1_1:72434575-72434594 Msa0041860:intron 35.0%
GTTGAAATGTCTAGACAATC+TGG - chr1_1:72434671-72434690 Msa0041860:intron 35.0%
TCAAAACATTGGGTCAATCA+TGG - chr1_1:72434700-72434719 Msa0041860:intron 35.0%
CAAAACATTGGGTCAATCAT+GGG - chr1_1:72434701-72434720 Msa0041860:intron 35.0%
AAACTGCATCATTAAAGCTG+AGG + chr1_1:72434913-72434932 None:intergenic 35.0%
ACATCCAAGCAATATAGGTT+GGG + chr1_1:72435008-72435027 None:intergenic 35.0%
AATGCACATCCAAGCAATAT+AGG + chr1_1:72435013-72435032 None:intergenic 35.0%
TATATTGCTTGGATGTGCAT+TGG - chr1_1:72435012-72435031 Msa0041860:intron 35.0%
CTCAGTAACCAAACAAAAGT+GGG + chr1_1:72435055-72435074 None:intergenic 35.0%
TTCTTCAATTGCTTCCTTCA+AGG + chr1_1:72435140-72435159 None:intergenic 35.0%
AAAAGCAATGACGTACACTT+GGG + chr1_1:72435168-72435187 None:intergenic 35.0%
ATGAACAGTTTGACATGAGA+TGG - chr1_1:72435296-72435315 Msa0041860:intron 35.0%
! TTGAACTCCATGATGATGTT+TGG - chr1_1:72435338-72435357 Msa0041860:intron 35.0%
AGTGAAACCAAACATCATCA+TGG + chr1_1:72435348-72435367 None:intergenic 35.0%
AAAGAAAGAGTTCACACTGT+CGG + chr1_1:72435452-72435471 None:intergenic 35.0%
TCTTCTGAATAGGTATGATG+AGG - chr1_1:72435531-72435550 Msa0041860:intron 35.0%
ACTTAAATCTCCTTCACCTT+GGG - chr1_1:72435594-72435613 Msa0041860:intron 35.0%
!! ATTTGTTTTTCCCAAGGTGA+AGG + chr1_1:72435607-72435626 None:intergenic 35.0%
!! GTTGACATTTGTTTTTCCCA+AGG + chr1_1:72435613-72435632 None:intergenic 35.0%
! GAAATTCCAAGTTGAAGTGT+TGG - chr1_1:72435657-72435676 Msa0041860:intron 35.0%
GACCAAAGATGCCAAAATTA+GGG - chr1_1:72435915-72435934 Msa0041860:intron 35.0%
!! TTCCCTAATTTTGGCATCTT+TGG + chr1_1:72435920-72435939 None:intergenic 35.0%
! TACTACAGGTTCCCTAATTT+TGG + chr1_1:72435929-72435948 None:intergenic 35.0%
CACACATCATTATAACGTTG+AGG + chr1_1:72435979-72435998 None:intergenic 35.0%
!!! CTTACTTGGTTTTGAAGCAA+GGG + chr1_1:72436181-72436200 None:intergenic 35.0%
!!! TCTTACTTGGTTTTGAAGCA+AGG + chr1_1:72436182-72436201 None:intergenic 35.0%
CTTCAAAACCAAGTAAGAAG+AGG - chr1_1:72436184-72436203 Msa0041860:intron 35.0%
GAACACAACTAGGAAAAGAA+AGG - chr1_1:72436206-72436225 Msa0041860:intron 35.0%
!! GCTTACGTGTTAAGTTGTTT+TGG - chr1_1:72436254-72436273 Msa0041860:intron 35.0%
AAATGCAATTCTCAAGAGGA+TGG + chr1_1:72436450-72436469 None:intergenic 35.0%
! ACATGTGCTTTCGTTCTTTT+AGG - chr1_1:72436542-72436561 Msa0041860:intron 35.0%
GCATGTACAGTTGAACTTAA+TGG - chr1_1:72436726-72436745 Msa0041860:intron 35.0%
! GAACACAACAAAGCATTCAT+GGG - chr1_1:72436985-72437004 Msa0041860:intron 35.0%
CTATATCCAAAAGTGGTTGT+CGG + chr1_1:72437126-72437145 None:intergenic 35.0%
TAAGGTTATGTGCAAACAGA+CGG + chr1_1:72437244-72437263 None:intergenic 35.0%
AAATACAGGAAGGTTACATG+AGG + chr1_1:72437486-72437505 None:intergenic 35.0%
GAAATTGCCCATTGAAATCT+AGG - chr1_1:72437513-72437532 Msa0041860:intron 35.0%
! TGGATGGATGTTTTCATCAA+TGG + chr1_1:72437591-72437610 None:intergenic 35.0%
! ATTGAACCTGACCACATTTT+TGG - chr1_1:72437634-72437653 Msa0041860:intron 35.0%
TGGATTTCTCACCAAAAATG+TGG + chr1_1:72437648-72437667 None:intergenic 35.0%
AGATTCCATCTACTATATCG+CGG + chr1_1:72437704-72437723 None:intergenic 35.0%
GTGATACCAGACATAATAGA+TGG + chr1_1:72437748-72437767 None:intergenic 35.0%
!!! GGTTTTTTTGGATCGGTTTG+CGG + chr1_1:72428442-72428461 None:intergenic 40.0%
AAAAACCGCTAAGATCGGAT+CGG - chr1_1:72428513-72428532 Msa0041860:three_prime_UTR 40.0%
CGAACCGATCCAAATATATG+CGG + chr1_1:72428923-72428942 None:intergenic 40.0%
CGCATATATTTGGATCGGTT+CGG - chr1_1:72428921-72428940 Msa0041860:intron 40.0%
!! ATATTTGGATCGGTTCGGTT+TGG - chr1_1:72428926-72428945 Msa0041860:intron 40.0%
AGTCAAAATATCCTCCCTAG+GGG + chr1_1:72429056-72429075 None:intergenic 40.0%
GAGTCAAAATATCCTCCCTA+GGG + chr1_1:72429057-72429076 None:intergenic 40.0%
TAACACTCATCACCCCAAAA+TGG - chr1_1:72429192-72429211 Msa0041860:intron 40.0%
GAAACATTTACTGGCGCAAA+AGG - chr1_1:72429517-72429536 Msa0041860:intron 40.0%
TTGGGTGATGAGTGTTTAAC+TGG - chr1_1:72429849-72429868 Msa0041860:CDS 40.0%
! AGCTCACGAGGACTATTTTA+AGG - chr1_1:72430389-72430408 Msa0041860:CDS 40.0%
GATAACAGCTATGTCCTTCA+AGG - chr1_1:72430573-72430592 Msa0041860:CDS 40.0%
ACTTGGTCGAGAAAGATTGA+GGG + chr1_1:72430985-72431004 None:intergenic 40.0%
AACTTGGTCGAGAAAGATTG+AGG + chr1_1:72430986-72431005 None:intergenic 40.0%
GTAAACATAGGTCAAGATGG+AGG + chr1_1:72431042-72431061 None:intergenic 40.0%
GAGCAGACCTTTAAATCAAC+AGG + chr1_1:72431104-72431123 None:intergenic 40.0%
! TGCTCATTTAGGGTTTGAAG+AGG - chr1_1:72431119-72431138 Msa0041860:CDS 40.0%
GTAGGCACTTGAGAGATATT+TGG + chr1_1:72431460-72431479 None:intergenic 40.0%
AACTAGGTGTTAGATTGCGT+AGG + chr1_1:72431478-72431497 None:intergenic 40.0%
TACGCAATCTAACACCTAGT+TGG - chr1_1:72431477-72431496 Msa0041860:CDS 40.0%
! GTCATATTCAACTCGACTTG+TGG + chr1_1:72431723-72431742 None:intergenic 40.0%
! CTTGTGTGGGTCTTATACTT+TGG - chr1_1:72431771-72431790 Msa0041860:CDS 40.0%
GACCAAGTTTCTCTTCAAGA+AGG - chr1_1:72431921-72431940 Msa0041860:intron 40.0%
GGGCTGATTATAGTTGTGTA+AGG + chr1_1:72432219-72432238 None:intergenic 40.0%
GTTAGGGAAAGAAAGGCAAT+GGG - chr1_1:72432355-72432374 Msa0041860:intron 40.0%
TTAGCATAGAACCGGTTAAC+AGG + chr1_1:72432569-72432588 None:intergenic 40.0%
AATTAACGATGAAGCCACAG+GGG + chr1_1:72432696-72432715 None:intergenic 40.0%
! TTGGTTGAAGGATGTTGCTT+GGG + chr1_1:72432725-72432744 None:intergenic 40.0%
TCTTTGATGTGTAAGGTGGT+TGG + chr1_1:72432870-72432889 None:intergenic 40.0%
! CTAGTCTTTGATGTGTAAGG+TGG + chr1_1:72432874-72432893 None:intergenic 40.0%
TAAGTAGTGTTACAGGCAAC+CGG + chr1_1:72433190-72433209 None:intergenic 40.0%
!! ATAATAGTGGGCGTGTTTGT+TGG - chr1_1:72433232-72433251 Msa0041860:intron 40.0%
GAACAAAACACAAGGGAAGA+AGG + chr1_1:72433553-72433572 None:intergenic 40.0%
GGAATGCTAAAACATGATGC+GGG - chr1_1:72433635-72433654 Msa0041860:intron 40.0%
TCTGTTCAGTGTTCCTGATT+GGG - chr1_1:72433841-72433860 Msa0041860:intron 40.0%
!! TGTCAATGAAGAGCATCACA+CGG - chr1_1:72434175-72434194 Msa0041860:intron 40.0%
TCAAATTCAATGCCGTTAGG+TGG + chr1_1:72434266-72434285 None:intergenic 40.0%
AGTGGTGAATCCCATAGATT+TGG + chr1_1:72434327-72434346 None:intergenic 40.0%
ACGTGAAGAAAAACCCAGAT+GGG - chr1_1:72434495-72434514 Msa0041860:intron 40.0%
AGAAAAACCCAGATGGGAAA+TGG - chr1_1:72434501-72434520 Msa0041860:intron 40.0%
CGAAAATGATATGCCAAAGC+TGG + chr1_1:72434569-72434588 None:intergenic 40.0%
GAAATGTCTAGACAATCTGG+TGG - chr1_1:72434674-72434693 Msa0041860:intron 40.0%
ACGAGTTATCAGTTTGACAG+AGG - chr1_1:72434728-72434747 Msa0041860:intron 40.0%
CGAGTTATCAGTTTGACAGA+GGG - chr1_1:72434729-72434748 Msa0041860:intron 40.0%
! TTGCCTTTTGCTCCTTTTGT+TGG - chr1_1:72434968-72434987 Msa0041860:intron 40.0%
ACTCCAACAAAAGGAGCAAA+AGG + chr1_1:72434974-72434993 None:intergenic 40.0%
TGATGGTTCACTCCAACAAA+AGG + chr1_1:72434983-72435002 None:intergenic 40.0%
CACATCCAAGCAATATAGGT+TGG + chr1_1:72435009-72435028 None:intergenic 40.0%
!! AGACTAAGCCCACTTTTGTT+TGG - chr1_1:72435044-72435063 Msa0041860:intron 40.0%
CCTCAGTAACCAAACAAAAG+TGG + chr1_1:72435056-72435075 None:intergenic 40.0%
!! CCACTTTTGTTTGGTTACTG+AGG - chr1_1:72435053-72435072 Msa0041860:intron 40.0%
TTGTTTGGTTACTGAGGACA+TGG - chr1_1:72435059-72435078 Msa0041860:intron 40.0%
TGATCAAGACAAAGCCTTGA+AGG - chr1_1:72435123-72435142 Msa0041860:intron 40.0%
GAAAAGCAATGACGTACACT+TGG + chr1_1:72435169-72435188 None:intergenic 40.0%
AACAGTTTGACATGAGATGG+TGG - chr1_1:72435299-72435318 Msa0041860:intron 40.0%
ACAGTTTGACATGAGATGGT+GGG - chr1_1:72435300-72435319 Msa0041860:intron 40.0%
TTCACTCATTGTACGAAGAC+CGG - chr1_1:72435362-72435381 Msa0041860:intron 40.0%
AAGACATCTCCCATGTATGT+CGG + chr1_1:72435400-72435419 None:intergenic 40.0%
!! ATGGGAGATGTCTTTTTAGC+TGG - chr1_1:72435406-72435425 Msa0041860:intron 40.0%
CACTTAAATCTCCTTCACCT+TGG - chr1_1:72435593-72435612 Msa0041860:intron 40.0%
! CGAGAAGGATGAAGAGTTTT+TGG - chr1_1:72435750-72435769 Msa0041860:intron 40.0%
GGACCAAAGATGCCAAAATT+AGG - chr1_1:72435914-72435933 Msa0041860:intron 40.0%
TTAGGGAACCTGTAGTAGAT+AGG - chr1_1:72435932-72435951 Msa0041860:intron 40.0%
CTTTGTGTCCTATCTACTAC+AGG + chr1_1:72435943-72435962 None:intergenic 40.0%
CTGTAGTAGATAGGACACAA+AGG - chr1_1:72435941-72435960 Msa0041860:intron 40.0%
GGACACAAAGGATACAAACT+AGG - chr1_1:72435953-72435972 Msa0041860:intron 40.0%
AGTATTGCGTTGAGTGAAGA+AGG - chr1_1:72436006-72436025 Msa0041860:intron 40.0%
GTTGTGTTCCTCTTCTTACT+TGG + chr1_1:72436195-72436214 None:intergenic 40.0%
GTAAGAAGAGGAACACAACT+AGG - chr1_1:72436196-72436215 Msa0041860:intron 40.0%
AGGAAAAGAAAGGTCAGTTC+TGG - chr1_1:72436216-72436235 Msa0041860:intron 40.0%
! AAAGGTCAGTTCTGGTAATG+TGG - chr1_1:72436224-72436243 Msa0041860:intron 40.0%
! AACACAAACCATTTGCTGCA+GGG + chr1_1:72436373-72436392 None:intergenic 40.0%
! AAACACAAACCATTTGCTGC+AGG + chr1_1:72436374-72436393 None:intergenic 40.0%
ACATAGTAACCATCATGAGG+TGG + chr1_1:72436754-72436773 None:intergenic 40.0%
GTTAATCAACACAGCATGCA+AGG - chr1_1:72436772-72436791 Msa0041860:intron 40.0%
CATGATTAGGACAACTTACC+AGG + chr1_1:72436798-72436817 None:intergenic 40.0%
GTAGGGTCCATTGAATTCTA+TGG - chr1_1:72436938-72436957 Msa0041860:intron 40.0%
GTGTTCCAAAATACCCATCA+TGG + chr1_1:72436971-72436990 None:intergenic 40.0%
! GGAACACAACAAAGCATTCA+TGG - chr1_1:72436984-72437003 Msa0041860:intron 40.0%
! ACAACAAAGCATTCATGGGA+TGG - chr1_1:72436989-72437008 Msa0041860:intron 40.0%
!! CAAGTTTGCTAACTATGGGT+TGG - chr1_1:72437070-72437089 Msa0041860:intron 40.0%
!! AACTATGGGTTGGTTCATGT+AGG - chr1_1:72437080-72437099 Msa0041860:intron 40.0%
!! ACTATGGGTTGGTTCATGTA+GGG - chr1_1:72437081-72437100 Msa0041860:intron 40.0%
CTGAAGGCTATATCCAAAAG+TGG + chr1_1:72437133-72437152 None:intergenic 40.0%
! CACTTTTGGATATAGCCTTC+AGG - chr1_1:72437131-72437150 Msa0041860:intron 40.0%
CATGTCATGAACAAACCTGA+AGG + chr1_1:72437149-72437168 None:intergenic 40.0%
TCAGGCTCATCCTACAATTA+AGG + chr1_1:72437262-72437281 None:intergenic 40.0%
AAACATCCATCCACCTTAGA+TGG - chr1_1:72437598-72437617 Msa0041860:intron 40.0%
AAAGTTCACTCCATCTAAGG+TGG + chr1_1:72437611-72437630 None:intergenic 40.0%
TTCTCACCAAAAATGTGGTC+AGG + chr1_1:72437643-72437662 None:intergenic 40.0%
GAAATCCGATCCGATCTTAG+CGG + chr1_1:72428521-72428540 None:intergenic 45.0%
GCTAAGATCGGATCGGATTT+CGG - chr1_1:72428520-72428539 Msa0041860:exon 45.0%
!! AAATCACATGCGGTTCGGTT+CGG + chr1_1:72428976-72428995 None:intergenic 45.0%
GGAGTCAAAATATCCTCCCT+AGG + chr1_1:72429058-72429077 None:intergenic 45.0%
ATATATATAGAGCGGGGGAG+CGG - chr1_1:72430025-72430044 Msa0041860:CDS 45.0%
TAGACATGCTCGAACTAACC+CGG + chr1_1:72430196-72430215 None:intergenic 45.0%
! GAGGGGACACTTAGAAGTAT+CGG + chr1_1:72430967-72430986 None:intergenic 45.0%
CTTGGTCGAGAAAGATTGAG+GGG + chr1_1:72430984-72431003 None:intergenic 45.0%
! CATTTAGGGTTTGAAGAGGC+TGG - chr1_1:72431123-72431142 Msa0041860:CDS 45.0%
CTGGTTCAATGAATCGCAAC+AGG - chr1_1:72431142-72431161 Msa0041860:CDS 45.0%
! CTGTGTTACTCACACCAACT+AGG + chr1_1:72431494-72431513 None:intergenic 45.0%
AAAAGCAAGGAGAAAACGCC+GGG + chr1_1:72431684-72431703 None:intergenic 45.0%
CAAAAGCAAGGAGAAAACGC+CGG + chr1_1:72431685-72431704 None:intergenic 45.0%
TAGTTGGCAGCACAAAAGCA+AGG + chr1_1:72431697-72431716 None:intergenic 45.0%
GGTTAGGGAAAGAAAGGCAA+TGG - chr1_1:72432354-72432373 Msa0041860:intron 45.0%
GAAAGAAAGGCAATGGGATG+CGG - chr1_1:72432361-72432380 Msa0041860:intron 45.0%
! TCTGAAGTAGGTTGGATGGA+AGG + chr1_1:72432660-72432679 None:intergenic 45.0%
! GCTATCTGAAGTAGGTTGGA+TGG + chr1_1:72432664-72432683 None:intergenic 45.0%
GTTGGTTGAAGGATGTTGCT+TGG + chr1_1:72432726-72432745 None:intergenic 45.0%
GAAAAGGGATTCTGACCACA+TGG + chr1_1:72432812-72432831 None:intergenic 45.0%
ATGACGTGGCAGCATAATAG+TGG - chr1_1:72433219-72433238 Msa0041860:intron 45.0%
TGACGTGGCAGCATAATAGT+GGG - chr1_1:72433220-72433239 Msa0041860:intron 45.0%
AAACGCGAGTGAGAAAGCTA+GGG + chr1_1:72433447-72433466 None:intergenic 45.0%
AAAACGCGAGTGAGAAAGCT+AGG + chr1_1:72433448-72433467 None:intergenic 45.0%
GAGCGGTGAAAAATGACAAG+CGG + chr1_1:72433511-72433530 None:intergenic 45.0%
CTCTGTTCAGTGTTCCTGAT+TGG - chr1_1:72433840-72433859 Msa0041860:intron 45.0%
AGCAGGAATCCAATTGTAGC+CGG + chr1_1:72434102-72434121 None:intergenic 45.0%
TAGTGCAGTGAGTGGAAGTA+TGG - chr1_1:72434145-72434164 Msa0041860:intron 45.0%
! AGTGCAGTGAGTGGAAGTAT+GGG - chr1_1:72434146-72434165 Msa0041860:intron 45.0%
!! GTCAATGAAGAGCATCACAC+GGG - chr1_1:72434176-72434195 Msa0041860:intron 45.0%
AGAAAGCTATGCCCCTCTTA+GGG + chr1_1:72434220-72434239 None:intergenic 45.0%
AAGAAAGCTATGCCCCTCTT+AGG + chr1_1:72434221-72434240 None:intergenic 45.0%
! AGGGGCATAGCTTTCTTTGA+AGG - chr1_1:72434224-72434243 Msa0041860:intron 45.0%
GGGGCATAGCTTTCTTTGAA+GGG - chr1_1:72434225-72434244 Msa0041860:intron 45.0%
! GGGCATAGCTTTCTTTGAAG+GGG - chr1_1:72434226-72434245 Msa0041860:intron 45.0%
! AGCTTTCTTTGAAGGGGACA+CGG - chr1_1:72434232-72434251 Msa0041860:intron 45.0%
! ACGGATTTTGAGCCACCTAA+CGG - chr1_1:72434251-72434270 Msa0041860:intron 45.0%
ATACCTAGAGCACGCGAATT+TGG + chr1_1:72434399-72434418 None:intergenic 45.0%
! AAATTCGCGTGCTCTAGGTA+TGG - chr1_1:72434398-72434417 Msa0041860:intron 45.0%
TAACACCTGAGTCTGATGGT+AGG - chr1_1:72434423-72434442 Msa0041860:intron 45.0%
CACGTGAAGAAAAACCCAGA+TGG - chr1_1:72434494-72434513 Msa0041860:intron 45.0%
TCTGGTGGCTGTCAAAACAT+TGG - chr1_1:72434689-72434708 Msa0041860:intron 45.0%
CTGGTGGCTGTCAAAACATT+GGG - chr1_1:72434690-72434709 Msa0041860:intron 45.0%
!! CAGTATCTGGCTTTGGATGA+GGG - chr1_1:72434752-72434771 Msa0041860:intron 45.0%
! GCAATATAGGTTGGGAGTGA+TGG + chr1_1:72435000-72435019 None:intergenic 45.0%
CACTCCCAACCTATATTGCT+TGG - chr1_1:72435001-72435020 Msa0041860:intron 45.0%
GTCAAACTGTTCATCTGTCC+AGG + chr1_1:72435290-72435309 None:intergenic 45.0%
TGTACGAAGACCGGAAAAAG+TGG - chr1_1:72435371-72435390 Msa0041860:intron 45.0%
GTACGAAGACCGGAAAAAGT+GGG - chr1_1:72435372-72435391 Msa0041860:intron 45.0%
!!! ATGTCGGTACCCACTTTTTC+CGG + chr1_1:72435384-72435403 None:intergenic 45.0%
!! AAAGTGGGTACCGACATACA+TGG - chr1_1:72435387-72435406 Msa0041860:intron 45.0%
!! AAGTGGGTACCGACATACAT+GGG - chr1_1:72435388-72435407 Msa0041860:intron 45.0%
GGTGAAGGAGATTTAAGTGC+AGG + chr1_1:72435592-72435611 None:intergenic 45.0%
CTACACCCAACACTTCAACT+TGG + chr1_1:72435666-72435685 None:intergenic 45.0%
GTGTAGCTGGATGTCAATCT+AGG - chr1_1:72435680-72435699 Msa0041860:intron 45.0%
! TGGATGTCAATCTAGGACAG+AGG - chr1_1:72435687-72435706 Msa0041860:intron 45.0%
! TGTCAATCTAGGACAGAGGT+TGG - chr1_1:72435691-72435710 Msa0041860:intron 45.0%
CACTCAATGCATGTCTGCAA+AGG + chr1_1:72435840-72435859 None:intergenic 45.0%
TTGAGTGTTCTCCAACGTTG+CGG - chr1_1:72435853-72435872 Msa0041860:intron 45.0%
AACGACAATGGTGCAGAAAC+TGG - chr1_1:72436111-72436130 Msa0041860:intron 45.0%
TCAAGATACCCTGCAGCAAA+TGG - chr1_1:72436362-72436381 Msa0041860:intron 45.0%
CTTGATGCAATGCAAGCAGT+AGG + chr1_1:72436488-72436507 None:intergenic 45.0%
CTACTGCTTGCATTGCATCA+AGG - chr1_1:72436486-72436505 Msa0041860:intron 45.0%
GTTACATGAAGCGCATGCTA+TGG + chr1_1:72436524-72436543 None:intergenic 45.0%
TCGGATGCAATTGCCCTTAA+TGG - chr1_1:72436576-72436595 Msa0041860:intron 45.0%
TTAATGGAGCCACCTCATGA+TGG - chr1_1:72436742-72436761 Msa0041860:intron 45.0%
CTCGGAGCCATAGAATTCAA+TGG + chr1_1:72436948-72436967 None:intergenic 45.0%
CCAAAATACCCATCATGGCT+CGG + chr1_1:72436966-72436985 None:intergenic 45.0%
! TATCGTCCGACAACCACTTT+TGG - chr1_1:72437117-72437136 Msa0041860:intron 45.0%
! TTGCTGTGAAAGTGTGGATC+AGG + chr1_1:72437280-72437299 None:intergenic 45.0%
GAACTGTTGCTGTGAAAGTG+TGG + chr1_1:72437286-72437305 None:intergenic 45.0%
! TGAACTTGACGGGTGAGAAT+TGG - chr1_1:72437565-72437584 Msa0041860:intron 45.0%
! TTCACTCCATCTAAGGTGGA+TGG + chr1_1:72437607-72437626 None:intergenic 45.0%
AGTCACCGCGATATAGTAGA+TGG - chr1_1:72437696-72437715 Msa0041860:intron 45.0%
TAGTAGATGGAATCTCACCG+TGG - chr1_1:72437709-72437728 Msa0041860:intron 45.0%
!! GAATATATATATATATATAT+AGG - chr1_1:72428374-72428393 Msa0041860:three_prime_UTR 5.0%
!! TATATATATATATATATATG+GGG + chr1_1:72429998-72430017 None:intergenic 5.0%
!! TTATATAAACAAATATATAA+AGG - chr1_1:72430089-72430108 Msa0041860:CDS 5.0%
!! AAATAATAACTAAAAATAAA+CGG + chr1_1:72430284-72430303 None:intergenic 5.0%
!!! TATTTTTAGTTATTATTTTA+AGG - chr1_1:72430286-72430305 Msa0041860:CDS 5.0%
!!! TTTTGCGGTTCGGTTCGGTT+TGG + chr1_1:72428566-72428585 None:intergenic 50.0%
!! TGCGGTTTGGATCGGTTTTG+AGG + chr1_1:72429024-72429043 None:intergenic 50.0%
TTGAGGAGGTGAGATGCTTG+TGG - chr1_1:72429704-72429723 Msa0041860:CDS 50.0%
CCATTCACCTCCTTGGCATA+CGG + chr1_1:72429794-72429813 None:intergenic 50.0%
TATATATAGAGCGGGGGAGC+GGG - chr1_1:72430026-72430045 Msa0041860:CDS 50.0%
!! GGGTTAGTTCGAGCATGTCT+AGG - chr1_1:72430195-72430214 Msa0041860:CDS 50.0%
TGGTGGCTGAGTTTGAACTC+CGG - chr1_1:72430326-72430345 Msa0041860:CDS 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr1_1:72433139-72433158 None:intergenic 50.0%
! ACTCGACTTGTGGCGATAGT+TGG + chr1_1:72431713-72431732 None:intergenic 50.0%
CATCGCATGCATGACAAAGC+AGG + chr1_1:72431902-72431921 None:intergenic 50.0%
! AGAGAGTGCAAAAACGCGTG+TGG - chr1_1:72432428-72432447 Msa0041860:intron 50.0%
TCCATCACACGCTCAACTAG+TGG - chr1_1:72432513-72432532 Msa0041860:intron 50.0%
CCATCACACGCTCAACTAGT+GGG - chr1_1:72432514-72432533 Msa0041860:intron 50.0%
! GGCTGCTATCTGAAGTAGGT+TGG + chr1_1:72432668-72432687 None:intergenic 50.0%
! GGTTGGCTGCTATCTGAAGT+AGG + chr1_1:72432672-72432691 None:intergenic 50.0%
CAAGTGATGGTCAAGTGGTG+TGG - chr1_1:72433037-72433056 Msa0041860:intron 50.0%
CAAGTGGTGTGGTACTCTAC+CGG - chr1_1:72433048-72433067 Msa0041860:intron 50.0%
! ATGCTTGGTGAGTGAGACAG+CGG - chr1_1:72433102-72433121 Msa0041860:intron 50.0%
! AGAGAGAGAGAGAGAGTGTG+TGG - chr1_1:72433143-72433162 Msa0041860:intron 50.0%
! GAGAGAGAGAGAGAGTGTGT+GGG - chr1_1:72433144-72433163 Msa0041860:intron 50.0%
TATGAAGTGGATCCGCGAGT+GGG + chr1_1:72433475-72433494 None:intergenic 50.0%
ATATGAAGTGGATCCGCGAG+TGG + chr1_1:72433476-72433495 None:intergenic 50.0%
GCAGGAATCCAATTGTAGCC+GGG + chr1_1:72434101-72434120 None:intergenic 50.0%
! AATGGTGGTAGTGCAGTGAG+TGG - chr1_1:72434137-72434156 Msa0041860:intron 50.0%
!! AATGAAGAGCATCACACGGG+TGG - chr1_1:72434179-72434198 Msa0041860:intron 50.0%
ACTGGTTGCTTCCCCTAAGA+GGG - chr1_1:72434205-72434224 Msa0041860:intron 50.0%
GAAAGCTATGCCCCTCTTAG+GGG + chr1_1:72434219-72434238 None:intergenic 50.0%
ATGCCAAATTCGCGTGCTCT+AGG - chr1_1:72434393-72434412 Msa0041860:intron 50.0%
GGAGTAACACCTGAGTCTGA+TGG - chr1_1:72434419-72434438 Msa0041860:intron 50.0%
GTTTGACAGAGGGCAGTATC+TGG - chr1_1:72434739-72434758 Msa0041860:intron 50.0%
!! GCAGTATCTGGCTTTGGATG+AGG - chr1_1:72434751-72434770 Msa0041860:intron 50.0%
!! TGGCTTTGGATGAGGGAGAT+GGG - chr1_1:72434759-72434778 Msa0041860:intron 50.0%
AGGACATGGCTTAGAGCGAT+GGG - chr1_1:72435073-72435092 Msa0041860:intron 50.0%
TTCACACTGTCGGAACGTTG+AGG + chr1_1:72435442-72435461 None:intergenic 50.0%
!! GTTGAAGTGTTGGGTGTAGC+TGG - chr1_1:72435667-72435686 Msa0041860:intron 50.0%
! TCTAGGACAGAGGTTGGAGA+TGG - chr1_1:72435697-72435716 Msa0041860:intron 50.0%
! TTGGAACGAGTTGAGCTCAG+AGG - chr1_1:72435777-72435796 Msa0041860:intron 50.0%
CACTTGAACAACCGCAACGT+TGG + chr1_1:72435867-72435886 None:intergenic 50.0%
GGTGCAGAAACTGGCAACAA+TGG - chr1_1:72436120-72436139 Msa0041860:intron 50.0%
!! TCTTGAGCGTCGACAAGTAC+AGG + chr1_1:72436348-72436367 None:intergenic 50.0%
GGTACTCAGCAGAATGTGCA+AGG - chr1_1:72436606-72436625 Msa0041860:intron 50.0%
TCAGCAGAATGTGCAAGGAC+TGG - chr1_1:72436611-72436630 Msa0041860:intron 50.0%
!!! CCGAGCCATGATGGGTATTT+TGG - chr1_1:72436963-72436982 Msa0041860:intron 50.0%
!! ATGGGTTGGTTCATGTAGGG+AGG - chr1_1:72437084-72437103 Msa0041860:intron 50.0%
!! TGGGTTGGTTCATGTAGGGA+GGG - chr1_1:72437085-72437104 Msa0041860:intron 50.0%
GTTCATGTAGGGAGGGCAAT+TGG - chr1_1:72437092-72437111 Msa0041860:intron 50.0%
TAGCTTCCTCAGAAGCTGTG+AGG - chr1_1:72437342-72437361 Msa0041860:intron 50.0%
CAATCACCTCACAGCTTCTG+AGG + chr1_1:72437351-72437370 None:intergenic 50.0%
!! CGGTTCGGTTCGGTTTGGTT+CGG + chr1_1:72428561-72428580 None:intergenic 55.0%
!! ACATGCGGTTCGGTTCGGTT+TGG + chr1_1:72428971-72428990 None:intergenic 55.0%
TGAGGAGGTTCCGTATGCCA+AGG - chr1_1:72429781-72429800 Msa0041860:CDS 55.0%
CCGTATGCCAAGGAGGTGAA+TGG - chr1_1:72429791-72429810 Msa0041860:CDS 55.0%
ATATATAGAGCGGGGGAGCG+GGG - chr1_1:72430027-72430046 Msa0041860:CDS 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + chr1_1:72430380-72430399 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG - chr1_1:72430377-72430396 Msa0041860:CDS 55.0%
CCCACTAGTTGAGCGTGTGA+TGG + chr1_1:72432517-72432536 None:intergenic 55.0%
TAACGATGAAGCCACAGGGG+AGG + chr1_1:72432693-72432712 None:intergenic 55.0%
CACTCACCAAGCATCAGAGC+CGG + chr1_1:72433096-72433115 None:intergenic 55.0%
AGTGAGACAGCGGTGACTAG+TGG - chr1_1:72433112-72433131 Msa0041860:intron 55.0%
AGGACGCGCTGTTAATGCAG+AGG - chr1_1:72433321-72433340 Msa0041860:intron 55.0%
ATGAAGTGGATCCGCGAGTG+GGG + chr1_1:72433474-72433493 None:intergenic 55.0%
CAAACATGGGCAGCCCAATC+AGG + chr1_1:72433857-72433876 None:intergenic 55.0%
CTGATTGGGCTGCCCATGTT+TGG - chr1_1:72433855-72433874 Msa0041860:intron 55.0%
ATCCAATTGTAGCCGGGCTG+CGG + chr1_1:72434095-72434114 None:intergenic 55.0%
! CACTGGTTGCTTCCCCTAAG+AGG - chr1_1:72434204-72434223 Msa0041860:intron 55.0%
CTGGTTGCTTCCCCTAAGAG+GGG - chr1_1:72434206-72434225 Msa0041860:intron 55.0%
CTGCTCCTACCATCAGACTC+AGG + chr1_1:72434431-72434450 None:intergenic 55.0%
! CAGAGGGCAGTATCTGGCTT+TGG - chr1_1:72434745-72434764 Msa0041860:intron 55.0%
!! CTGGCTTTGGATGAGGGAGA+TGG - chr1_1:72434758-72434777 Msa0041860:intron 55.0%
GGGAGATGGGCAAGTTATGC+TGG - chr1_1:72434772-72434791 Msa0041860:intron 55.0%
GAGGACATGGCTTAGAGCGA+TGG - chr1_1:72435072-72435091 Msa0041860:intron 55.0%
ACATGGCTTAGAGCGATGGG+AGG - chr1_1:72435076-72435095 Msa0041860:intron 55.0%
CATGGCTTAGAGCGATGGGA+GGG - chr1_1:72435077-72435096 Msa0041860:intron 55.0%
ACTGTCGGAACGTTGAGGTG+TGG + chr1_1:72435437-72435456 None:intergenic 55.0%
TCAACACAGCATGCAAGGCC+TGG - chr1_1:72436777-72436796 Msa0041860:intron 55.0%
TCTATGGCTCCGAGCCATGA+TGG - chr1_1:72436954-72436973 Msa0041860:intron 55.0%
CTATGGCTCCGAGCCATGAT+GGG - chr1_1:72436955-72436974 Msa0041860:intron 55.0%
! GTTCGCGGTGCGGTTTGGAT+CGG + chr1_1:72429032-72429051 None:intergenic 60.0%
!! ATCCTCCCTAGGGGTGTTCG+CGG + chr1_1:72429047-72429066 None:intergenic 60.0%
GGAGGTTCCGTATGCCAAGG+AGG - chr1_1:72429784-72429803 Msa0041860:CDS 60.0%
TATATAGAGCGGGGGAGCGG+GGG - chr1_1:72430028-72430047 Msa0041860:CDS 60.0%
ATAGCAGCCAACCTCCCCTG+TGG - chr1_1:72432679-72432698 Msa0041860:intron 60.0%
GATGAAGCCACAGGGGAGGT+TGG + chr1_1:72432689-72432708 None:intergenic 60.0%
!! CGGAGGTCGTTGGTAGTCAG+CGG + chr1_1:72433076-72433095 None:intergenic 60.0%
! CGCTGACTACCAACGACCTC+CGG - chr1_1:72433074-72433093 Msa0041860:intron 60.0%
TCACCAAGCATCAGAGCCGG+AGG + chr1_1:72433093-72433112 None:intergenic 60.0%
!!! CGCGTTTTTTCCCCCACTCG+CGG - chr1_1:72433460-72433479 Msa0041860:intron 60.0%
TGAAGTGGATCCGCGAGTGG+GGG + chr1_1:72433473-72433492 None:intergenic 60.0%
TACAGTAAGTGGCCGCAGCC+CGG - chr1_1:72434080-72434099 Msa0041860:intron 60.0%
!! TCGTTGGTAGTCAGCGGCGC+CGG + chr1_1:72433070-72433089 None:intergenic 65.0%
GCATCAGAGCCGGAGGTCGT+TGG + chr1_1:72433086-72433105 None:intergenic 65.0%
! CGACCTCCGGCTCTGATGCT+TGG - chr1_1:72433087-72433106 Msa0041860:intron 65.0%
GCATCACACGGGTGGTGCAC+TGG - chr1_1:72434187-72434206 Msa0041860:intron 65.0%
! GGGGTGTTCGCGGTGCGGTT+TGG + chr1_1:72429037-72429056 None:intergenic 70.0%
ACCGCACCGCGAACACCCCT+AGG - chr1_1:72429038-72429057 Msa0041860:intron 70.0%
!! CCCTAGGGGTGTTCGCGGTG+CGG + chr1_1:72429042-72429061 None:intergenic 70.0%
CCGCACCGCGAACACCCCTA+GGG - chr1_1:72429039-72429058 Msa0041860:intron 70.0%
CACCGCGAACACCCCTAGGG+AGG - chr1_1:72429042-72429061 Msa0041860:intron 70.0%
GGCCGCAGCCCGGCTACAAT+TGG - chr1_1:72434090-72434109 Msa0041860:intron 70.0%
ATAGAGCGGGGGAGCGGGGG+AGG - chr1_1:72430031-72430050 Msa0041860:CDS 75.0%
TAGAGCGGGGGAGCGGGGGA+GGG - chr1_1:72430032-72430051 Msa0041860:CDS 75.0%
! AGAGCGGGGGAGCGGGGGAG+GGG - chr1_1:72430033-72430052 Msa0041860:CDS 80.0%
! GAGCGGGGGAGCGGGGGAGG+GGG - chr1_1:72430034-72430053 Msa0041860:CDS 85.0%
! AGCGGGGGAGCGGGGGAGGG+GGG - chr1_1:72430035-72430054 Msa0041860:CDS 85.0%
! GCGGGGGAGCGGGGGAGGGG+GGG - chr1_1:72430036-72430055 Msa0041860:CDS 90.0%
! CGGGGGAGCGGGGGAGGGGG+GGG - chr1_1:72430037-72430056 Msa0041860:CDS 90.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 72428060 72437792 72428060 ID=Msa0041860;Name=Msa0041860
chr1_1 mRNA 72428060 72437792 72428060 ID=Msa0041860-mRNA-1;Parent=Msa0041860;Name=Msa0041860-mRNA-1;_AED=0.14;_eAED=0.16;_QI=0|0.66|0.6|0.8|1|1|10|474|924
chr1_1 exon 72428060 72428581 72428060 ID=Msa0041860-mRNA-1:exon:24108;Parent=Msa0041860-mRNA-1
chr1_1 exon 72428700 72428750 72428700 ID=Msa0041860-mRNA-1:exon:24107;Parent=Msa0041860-mRNA-1
chr1_1 exon 72428842 72428910 72428842 ID=Msa0041860-mRNA-1:exon:24106;Parent=Msa0041860-mRNA-1
chr1_1 exon 72429054 72429125 72429054 ID=Msa0041860-mRNA-1:exon:24105;Parent=Msa0041860-mRNA-1
chr1_1 exon 72429220 72429288 72429220 ID=Msa0041860-mRNA-1:exon:24104;Parent=Msa0041860-mRNA-1
chr1_1 exon 72429469 72429525 72429469 ID=Msa0041860-mRNA-1:exon:24103;Parent=Msa0041860-mRNA-1
chr1_1 exon 72429625 72431816 72429625 ID=Msa0041860-mRNA-1:exon:24102;Parent=Msa0041860-mRNA-1
chr1_1 exon 72432744 72432828 72432744 ID=Msa0041860-mRNA-1:exon:24101;Parent=Msa0041860-mRNA-1
chr1_1 exon 72436047 72436112 72436047 ID=Msa0041860-mRNA-1:exon:24100;Parent=Msa0041860-mRNA-1
chr1_1 exon 72437727 72437792 72437727 ID=Msa0041860-mRNA-1:exon:24099;Parent=Msa0041860-mRNA-1
chr1_1 CDS 72437727 72437792 72437727 ID=Msa0041860-mRNA-1:cds;Parent=Msa0041860-mRNA-1
chr1_1 CDS 72436047 72436112 72436047 ID=Msa0041860-mRNA-1:cds;Parent=Msa0041860-mRNA-1
chr1_1 CDS 72432744 72432828 72432744 ID=Msa0041860-mRNA-1:cds;Parent=Msa0041860-mRNA-1
chr1_1 CDS 72429625 72431816 72429625 ID=Msa0041860-mRNA-1:cds;Parent=Msa0041860-mRNA-1
chr1_1 CDS 72429469 72429525 72429469 ID=Msa0041860-mRNA-1:cds;Parent=Msa0041860-mRNA-1
chr1_1 CDS 72429220 72429288 72429220 ID=Msa0041860-mRNA-1:cds;Parent=Msa0041860-mRNA-1
chr1_1 CDS 72429054 72429125 72429054 ID=Msa0041860-mRNA-1:cds;Parent=Msa0041860-mRNA-1
chr1_1 CDS 72428842 72428910 72428842 ID=Msa0041860-mRNA-1:cds;Parent=Msa0041860-mRNA-1
chr1_1 CDS 72428700 72428750 72428700 ID=Msa0041860-mRNA-1:cds;Parent=Msa0041860-mRNA-1
chr1_1 CDS 72428534 72428581 72428534 ID=Msa0041860-mRNA-1:cds;Parent=Msa0041860-mRNA-1
chr1_1 three_prime_UTR 72428060 72428533 72428060 ID=Msa0041860-mRNA-1:three_prime_utr;Parent=Msa0041860-mRNA-1
Gene Sequence

>Msa0041860

ATGGAAAAATGTAATGAGAGAAAAATCCACAGGTATCCATTTAGTAGAACAGAAGAAGCCATAAAGGCTTCAAGAATTGAAAAAGGAAGGGATAACTTTTGTCTTTGTGAGGAGGTTCCGTATGCCAAGGAGGAGAGTAGTTTTACAAGTGATGGTCAAGTGGTGTGGTACTCTACCGGCGCCGCTGACTACCAACGACCTCCGGCTCTGATGCTTGAGTTTGATGGTTTCGCTAATTGGAAACTTTGTTTTGGTGCATTTTACAGTAAGTGGCCGCAGCCCGGCTACAATTGGATTCCTGCTAGTTCATCAAAATGGAATGGTGGTAGTGCAGTGAGTGGAAGTATGGGTGACTCTGTCAATGAAGAGCATCACACGGGTGGTGCACTGGTTGCTTCCCCTAAGAGGGGCATAGCTTTCTTTGAAGGGGACACGGATTTTGAGCCACCTAACGGCATTGAATTTGAAACTCATGAAGCAGCATATTCATTTTATCAAGAGTATGCCAAATCTATGGGATTCACCACTTCCATTAAAAACAGCAGACGATCAAAGAAGACCAAAGAATTTATTGATGCCAAATTCGCGTGCTCTAGGTATGGAGTAACACCTGAGTCTGATGGTAGGAGCAGTCGAAGATCGAGTGTAAAGAAGACAGATTGCAAAGCTTGCATGCACGTGAAGAAAAACCCAGATGGGAAATGGAACATTTTTGAATTTATAAAGGATCATAATCATGAACTTTTACCAGCTTTGGCATATCATTTTCGGATTCATGGAAACGTGAAGTTAGCTGACAAGAATAATATTGATATCTTGCATGCTGTTAGTGAACGTACCCGAAAGATGTATGTTGAAATGTCTAGACAATCTGGTGGCTGTCAAAACATTGGGTCAATCATGGGTGATACGAGTTATCAGTTTGACAGAGGGCAGTATCTGGCTTTGGATGAGGGAGATGGGCAAGTTATGCTGGAGTATTTCAAGCATATTCAAAAGGAGGATCCCAACTTCTTCTATTCTATAGATTTAAACGAGGAACAACGTTTAAGAAATATATTTTGGGTTGATTCAAAAAGCATCGATGATTACCTCAGCTTTAATGATGCAGTTTCATTTGATACTTCCTACATAAAAAGCAACGATAAGTTGCCTTTTGCTCCTTTTGTTGGAGTGAACCATCACTCCCAACCTATATTGCTTGGATGTGCATTGGTTGCTGATGAGACTAAGCCCACTTTTGTTTGGTTACTGAGGACATGGCTTAGAGCGATGGGAGGGCAAGCTCCCAAAGTTATAGTCACTGATCAAGACAAAGCCTTGAAGGAAGCAATTGAAGAAGTCTTCCCAAGTGTACGTCATTGCTTTTCTCTTTGTCACATATTGGAAAAGATACCTGAAAATCTGTCTTTTGTGATAAAACAGTACAAGAACTTCTTGCCAAAGTTTAAGAATTGCATTTTTAAGTCCTGGACAGATGAACAGTTTGACATGAGATGGTGGGAAATAGTGACTATATTTGAACTCCATGATGATGTTTGGTTTCACTCATTGTACGAAGACCGGAAAAAGTGGGTACCGACATACATGGGAGATGTCTTTTTAGCTGGAATGTCCACACCTCAACGTTCCGACAGTGTGAACTCTTTCTTTGACAAATACATTCATAAGAAAATCACCCTTAAAGAGTTTGTGAAACAGTATAGGTTAATTCTTCTGAATAGGTATGATGAGGAAGAAATCGCAGATTTTGATACATTGCACAAACAACCTGCACTTAAATCTCCTTCACCTTGGGAAAAACAAATGTCAACAATTTATACACATGCAATATTTAAGAAATTCCAAGTTGAAGTGTTGGGTGTAGCTGGATGTCAATCTAGGACAGAGGTTGGAGATGGAACTGTTGTGAGATATATAGTTCAAGATTACGAGAAGGATGAAGAGTTTTTGGTAACTTGGAACGAGTTGAGCTCAGAGGTCTCTTGCTTCTGTCGATTGTTCGAATATAAAGGTTTCCTTTGCAGACATGCATTGAGTGTTCTCCAACGTTGCGGTTGTTCAAGTGTTCCATCTCATTATATCATGAAGAGATGGACCAAAGATGCCAAAATTAGGGAACCTGTAGTAGATAGGACACAAAGGATACAAACTAGGCCTCAACGTTATAATGATGTGTGCAAACGAAGTATTGCGTTGAGTGAAGAAGGATCATCATCCGAAGAGAGTTATAATGTTGCTTTGCGCGCGCTTGTTGATGCTTTGAAGAACTGTGTACTTGTAAATAACTCTAACGACAATGGTGCAGAAACTGGCAACAATGGTTACAGTCTTCGCGAAGCAGAAGAATATCAGAGTACCCTTGCTTCAAAACCAAGTAAGAAGAGGAACACAACTAGGAAAAGAAAGGTGCAACAAGAGCAGAGTCCTGTACTTGTCGACGCTCAAGATACCCTGCAGCAAATGGATAATCTTAGCTCGGATGCAATTGCCCTTAATGGATATTATGGTACTCAGCAGAATGTGCAAGGACTGCATGTACAGTTGAACTTAATGGAGCCACCTCATGATGGTTACTATGTTAATCAACACAGCATGCAAGGCCTGGGTCCATTGAATTCTATGGCTCCGAGCCATGATGGGTATTTTGGAACACAACAAAGCATTCATGGGATGGGAGGGCAATTGGAGTATCGTCCGACAACCACTTTTGGATATAGCCTTCAGGATGAGCCTGATCCACACTTTCACAGCAACAGTTCAAGAAATACTTAG
Protein sequence

>Msa0041860

MEKCNERKIHRYPFSRTEEAIKASRIEKGRDNFCLCEEVPYAKEESSFTSDGQVVWYSTGAADYQRPPALMLEFDGFANWKLCFGAFYSKWPQPGYNWIPASSSKWNGGSAVSGSMGDSVNEEHHTGGALVASPKRGIAFFEGDTDFEPPNGIEFETHEAAYSFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDGRSSRRSSVKKTDCKACMHVKKNPDGKWNIFEFIKDHNHELLPALAYHFRIHGNVKLADKNNIDILHAVSERTRKMYVEMSRQSGGCQNIGSIMGDTSYQFDRGQYLALDEGDGQVMLEYFKHIQKEDPNFFYSIDLNEEQRLRNIFWVDSKSIDDYLSFNDAVSFDTSYIKSNDKLPFAPFVGVNHHSQPILLGCALVADETKPTFVWLLRTWLRAMGGQAPKVIVTDQDKALKEAIEEVFPSVRHCFSLCHILEKIPENLSFVIKQYKNFLPKFKNCIFKSWTDEQFDMRWWEIVTIFELHDDVWFHSLYEDRKKWVPTYMGDVFLAGMSTPQRSDSVNSFFDKYIHKKITLKEFVKQYRLILLNRYDEEEIADFDTLHKQPALKSPSPWEKQMSTIYTHAIFKKFQVEVLGVAGCQSRTEVGDGTVVRYIVQDYEKDEEFLVTWNELSSEVSCFCRLFEYKGFLCRHALSVLQRCGCSSVPSHYIMKRWTKDAKIREPVVDRTQRIQTRPQRYNDVCKRSIALSEEGSSSEESYNVALRALVDALKNCVLVNNSNDNGAETGNNGYSLREAEEYQSTLASKPSKKRNTTRKRKVQQEQSPVLVDAQDTLQQMDNLSSDAIALNGYYGTQQNVQGLHVQLNLMEPPHDGYYVNQHSMQGLGPLNSMAPSHDGYFGTQQSIHGMGGQLEYRPTTTFGYSLQDEPDPHFHSNSSRNT*