AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0089870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0089870 MtrunA17_Chr1g0207551 97.411 811 19 1 100 908 1 811 0.0 1668
Msa0089870 MtrunA17_Chr3g0080351 49.465 841 376 9 89 908 32 844 0.0 797
Msa0089870 MtrunA17_Chr2g0329031 49.280 694 327 8 127 810 8 686 0.0 676
Msa0089870 MtrunA17_Chr5g0448761 36.349 641 391 8 121 745 48 687 4.11e-142 441
Msa0089870 MtrunA17_Chr1g0202341 34.123 633 402 6 131 751 49 678 3.15e-123 389
Msa0089870 MtrunA17_Chr2g0291581 34.395 628 384 11 126 739 63 676 7.20e-120 380
Msa0089870 MtrunA17_Chr5g0441581 34.548 631 386 7 131 752 30 642 6.73e-118 375
Msa0089870 MtrunA17_Chr2g0296781 35.346 563 350 6 137 690 1 558 8.86e-114 365
Msa0089870 MtrunA17_Chr5g0440451 32.669 652 387 14 132 749 42 675 1.79e-112 367
Msa0089870 MtrunA17_Chr6g0477261 39.858 424 247 3 274 690 25 447 3.92e-104 337
Msa0089870 MtrunA17_Chr1g0196541 33.919 569 350 8 137 690 1 558 4.77e-103 337
Msa0089870 MtrunA17_Chr3g0118611 37.194 449 276 3 304 748 118 564 1.84e-100 331
Msa0089870 MtrunA17_Chr2g0291591 34.195 503 325 4 132 632 63 561 4.06e-97 316
Msa0089870 MtrunA17_Chr5g0448511 33.784 444 288 2 303 740 11 454 1.18e-93 306
Msa0089870 MtrunA17_Chr2g0287061 34.568 567 328 9 125 688 175 701 2.06e-93 312
Msa0089870 MtrunA17_Chr3g0082121 31.331 616 394 13 126 728 36 635 3.61e-91 304
Msa0089870 MtrunA17_Chr8g0363841 30.948 559 369 7 141 688 25 577 8.64e-89 296
Msa0089870 MtrunA17_Chr1g0203721 28.031 635 443 6 136 757 66 699 6.66e-83 285
Msa0089870 MtrunA17_Chr2g0287651 30.071 562 375 9 137 688 79 632 1.30e-81 282
Msa0089870 MtrunA17_Chr2g0324011 27.592 569 401 6 128 689 5 569 4.30e-81 273
Msa0089870 MtrunA17_Chr6g0458391 29.401 568 378 5 126 689 218 766 2.76e-80 276
Msa0089870 MtrunA17_Chr2g0276841 30.756 569 366 13 133 685 70 626 6.89e-73 254
Msa0089870 MtrunA17_Chr1g0203051 28.924 567 365 16 128 675 74 621 4.58e-68 239
Msa0089870 MtrunA17_Chr1g0198761 29.340 576 373 14 136 689 50 613 2.74e-67 239
Msa0089870 MtrunA17_Chr2g0294841 27.018 607 421 11 92 683 4 603 3.73e-60 219
Msa0089870 MtrunA17_Chr2g0290391 26.917 587 376 16 133 689 51 614 2.84e-58 212
Msa0089870 MtrunA17_Chr1g0164591 29.870 308 206 4 217 523 10 308 6.81e-47 171
Msa0089870 MtrunA17_Chr5g0431001 28.221 489 311 13 73 539 10 480 1.21e-46 174
Msa0089870 MtrunA17_Chr7g0258861 27.431 288 200 5 128 408 5 290 1.26e-32 129
Msa0089870 MtrunA17_Chr2g0308841 25.267 281 168 5 464 729 1 254 1.81e-18 86.3
Msa0089870 MtrunA17_Chr7g0233911 38.053 113 66 2 132 241 33 144 2.93e-16 79.0
Msa0089870 MtrunA17_Chr3g0078041 37.383 107 60 2 132 233 49 153 4.30e-16 78.6
Msa0089870 MtrunA17_Chr4g0033611 29.630 135 91 2 102 235 48 179 4.27e-14 73.6
Msa0089870 MtrunA17_Chr2g0329361 31.250 112 72 2 127 233 54 165 1.01e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0089870 AT4G15090.1 66.710 778 252 4 121 895 39 812 0.0 1089
Msa0089870 AT4G15090.5 66.710 778 252 4 121 895 39 812 0.0 1089
Msa0089870 AT4G15090.3 66.710 778 252 4 121 895 39 812 0.0 1089
Msa0089870 AT4G15090.2 66.710 778 252 4 121 895 39 812 0.0 1089
Msa0089870 AT4G15090.4 66.710 778 252 4 121 895 39 812 0.0 1089
Msa0089870 AT3G22170.2 49.566 807 360 9 122 908 60 839 0.0 799
Msa0089870 AT3G22170.1 49.566 807 360 9 122 908 60 839 0.0 799
Msa0089870 AT1G76320.1 46.322 639 331 4 137 771 1 631 0.0 622
Msa0089870 AT1G76320.4 46.322 639 331 4 137 771 1 631 0.0 622
Msa0089870 AT1G76320.2 46.322 639 331 4 137 771 1 631 0.0 622
Msa0089870 AT1G76320.3 46.322 639 331 4 137 771 1 631 0.0 620
Msa0089870 AT4G19990.6 43.669 774 341 13 130 879 18 720 0.0 548
Msa0089870 AT4G19990.3 43.669 774 341 13 130 879 18 720 0.0 548
Msa0089870 AT4G19990.2 43.669 774 341 13 130 879 18 720 0.0 548
Msa0089870 AT4G19990.4 43.669 774 341 13 130 879 18 720 0.0 548
Msa0089870 AT4G19990.7 43.669 774 341 13 130 879 32 734 0.0 548
Msa0089870 AT4G19990.5 43.669 774 341 13 130 879 18 720 0.0 548
Msa0089870 AT2G32250.2 39.130 782 406 10 132 889 37 772 1.01e-175 530
Msa0089870 AT2G32250.4 39.130 782 406 10 132 889 37 772 1.01e-175 530
Msa0089870 AT2G32250.6 39.080 783 407 10 132 889 37 774 2.55e-175 528
Msa0089870 AT2G32250.1 39.080 783 407 10 132 889 37 774 2.55e-175 528
Msa0089870 AT2G32250.3 39.080 783 407 10 132 889 37 774 2.55e-175 528
Msa0089870 AT2G32250.5 39.323 768 397 9 132 875 37 759 5.05e-175 526
Msa0089870 AT2G32250.8 38.996 777 404 10 137 889 1 731 3.26e-174 524
Msa0089870 AT2G32250.7 38.946 778 405 10 137 889 1 733 8.72e-174 523
Msa0089870 AT4G19990.1 42.974 733 323 13 171 879 2 663 4.41e-167 503
Msa0089870 AT4G38180.1 37.619 630 380 5 130 747 70 698 1.12e-144 448
Msa0089870 AT2G27110.2 34.032 620 374 9 132 745 48 638 1.12e-116 377
Msa0089870 AT2G27110.1 34.032 620 374 9 132 745 48 638 1.12e-116 377
Msa0089870 AT1G52520.1 34.796 638 377 14 133 750 85 703 2.42e-112 361
Msa0089870 AT2G27110.3 37.190 484 285 6 267 745 24 493 5.96e-106 344
Msa0089870 AT1G80010.1 32.432 629 396 14 133 742 95 713 3.52e-105 342
Msa0089870 AT3G06250.2 34.107 560 324 8 132 689 189 705 5.89e-98 324
Msa0089870 AT3G06250.2 33.929 112 63 1 121 232 16 116 6.79e-11 66.6
Msa0089870 AT3G06250.1 34.107 560 324 8 132 689 189 705 5.89e-98 324
Msa0089870 AT3G06250.1 33.929 112 63 1 121 232 16 116 6.79e-11 66.6
Msa0089870 AT3G06250.3 34.107 560 324 8 132 689 189 705 5.89e-98 324
Msa0089870 AT3G06250.3 33.929 112 63 1 121 232 16 116 6.79e-11 66.6
Msa0089870 AT5G18960.2 33.157 567 329 9 129 689 207 729 1.74e-93 313
Msa0089870 AT5G18960.1 33.157 567 329 9 129 689 207 729 1.74e-93 313
Msa0089870 AT4G38170.1 32.700 474 292 6 308 767 21 481 3.92e-85 283
Msa0089870 AT1G10240.2 29.322 590 384 13 133 701 48 625 5.08e-71 248
Msa0089870 AT1G10240.1 29.322 590 384 13 133 701 48 625 5.08e-71 248
Msa0089870 AT5G28530.3 27.721 588 376 16 128 687 50 616 3.17e-56 206
Msa0089870 AT5G28530.2 27.721 588 376 16 128 687 50 616 3.17e-56 206
Msa0089870 AT5G28530.1 27.211 588 383 15 128 687 50 620 5.32e-56 206
Msa0089870 AT5G28530.5 26.343 577 335 21 128 687 50 553 1.30e-39 156
Msa0089870 AT5G28530.4 25.823 577 342 20 128 687 50 557 1.49e-39 156
Msa0089870 AT2G43280.1 36.975 119 66 3 128 239 17 133 1.40e-15 77.0
Msa0089870 AT4G12850.4 39.604 101 60 1 132 232 10 109 6.28e-15 73.2
Msa0089870 AT4G12850.2 39.604 101 60 1 132 232 10 109 8.09e-15 72.8
Msa0089870 AT3G59470.3 34.286 105 68 1 132 235 69 173 4.01e-14 73.9
Msa0089870 AT3G59470.1 34.286 105 68 1 132 235 69 173 4.01e-14 73.9
Msa0089870 AT3G59470.2 34.286 105 68 1 132 235 81 185 4.02e-14 73.9
Msa0089870 AT4G12850.1 39.604 101 60 1 132 232 10 109 4.35e-14 72.0
Msa0089870 AT3G07500.1 30.323 155 98 2 126 278 26 172 7.03e-14 72.4
Msa0089870 AT2G43280.2 35.354 99 55 3 148 239 2 98 6.97e-11 62.4

Find 215 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTACAGGTTCCCTAATTT+TGG 0.141551 1_2:-71636160 None:intergenic
CCGAGCCATGATGGGTATTT+TGG 0.151356 1_2:+71637196 Msa0089870:CDS
ACTGTTTCACAAACTCTTTA+AGG 0.204134 1_2:-71635732 None:intergenic
AACGTTTAAGAAATATATTT+TGG 0.206444 1_2:+71635095 Msa0089870:CDS
GCAGCCTTTGCCTTTGTTTC+CGG 0.213358 1_2:-71632997 None:intergenic
TCGGATGCAATTGCCCTTAA+TGG 0.236596 1_2:+71636810 Msa0089870:CDS
ATTGCCCTTAATGGATATTA+TGG 0.237741 1_2:+71636819 Msa0089870:CDS
AGTTTGATGGTTTCGCTAAT+TGG 0.252792 1_2:+71634270 Msa0089870:CDS
GGACCAAAGATGCCAAAATT+AGG 0.253094 1_2:+71636148 Msa0089870:CDS
TTTGGCATCAATAAATTCTT+TGG 0.254194 1_2:-71634612 None:intergenic
CATTTCAACATACATCTTTC+GGG 0.258771 1_2:-71634891 None:intergenic
TGTCGATTGTTCGAATATAA+AGG 0.270665 1_2:+71636045 Msa0089870:CDS
GAGTACCATAATATCCATTA+AGG 0.276199 1_2:-71636824 None:intergenic
TCAAGAGTATGCCAAATCTA+TGG 0.278613 1_2:+71634547 Msa0089870:CDS
ATACCTAGAGCACGCGAATT+TGG 0.279686 1_2:-71634630 None:intergenic
ACATTTCAACATACATCTTT+CGG 0.295052 1_2:-71634892 None:intergenic
AAGAAAGCTATGCCCCTCTT+AGG 0.295788 1_2:-71634452 None:intergenic
CTGTTTCACAAACTCTTTAA+GGG 0.296391 1_2:-71635731 None:intergenic
TTTACGATTCTCTATGGAAA+TGG 0.303715 1_2:+71633044 Msa0089870:CDS
ATATTCAGAAGAAATGAAAT+TGG 0.307598 1_2:-71637901 None:intergenic
TTCCTGCTAGTTCATCAAAA+TGG 0.314122 1_2:+71634348 Msa0089870:CDS
TTGATCAGTGACTATAACTT+TGG 0.317440 1_2:-71635341 None:intergenic
GCATGTACAGTTGAACTTAA+TGG 0.318417 1_2:+71636960 Msa0089870:intron
AATTTGTCTCTTCTTTGATA+TGG 0.325090 1_2:+71637555 Msa0089870:three_prime_UTR
TATCGTCCGACAACCACTTT+TGG 0.332110 1_2:+71637353 Msa0089870:CDS
AAAATGCAATTCTTAAACTT+TGG 0.338533 1_2:-71635493 None:intergenic
TAGTGCAGTGAGTGGAAGTA+TGG 0.343019 1_2:+71634379 Msa0089870:CDS
GAAATTGCCCATTGAAATCT+AGG 0.344447 1_2:+71637748 Msa0089870:three_prime_UTR
AAAATGTTCCATTTCCCATC+TGG 0.352283 1_2:-71634743 None:intergenic
GCTAATTGGAAACTTTGTTT+TGG 0.353265 1_2:+71634284 Msa0089870:CDS
TTCTTCAATTGCTTCCTTCA+AGG 0.360322 1_2:-71635371 None:intergenic
GTAGGGTCCATTGAATTCTA+TGG 0.362242 1_2:+71637171 Msa0089870:intron
AACGACAATGGTGCAGAAAC+TGG 0.362647 1_2:+71636345 Msa0089870:CDS
GTTTGACAGAGGGCAGTATC+TGG 0.368111 1_2:+71634973 Msa0089870:CDS
GGCCGCAGCCCGGCTACAAT+TGG 0.381550 1_2:+71634324 Msa0089870:CDS
ATAGGTTAATTCTTCTGAAT+AGG 0.384277 1_2:+71635755 Msa0089870:CDS
GTTGTGTTCCTCTTCTTACT+TGG 0.388273 1_2:-71636426 None:intergenic
AAAAGAGAATTGAAAGAACT+TGG 0.390296 1_2:+71637607 Msa0089870:three_prime_UTR
GGAACACAACAAAGCATTCA+TGG 0.390771 1_2:+71637217 Msa0089870:CDS
AAACATCCATCCACCTTAGA+TGG 0.394409 1_2:+71637833 Msa0089870:three_prime_UTR
TGAACTTGACGGGTGAGAAT+TGG 0.396608 1_2:+71637800 Msa0089870:three_prime_UTR
TGATCAAGACAAAGCCTTGA+AGG 0.399103 1_2:+71635357 Msa0089870:CDS
AGAAAGCTATGCCCCTCTTA+GGG 0.402896 1_2:-71634451 None:intergenic
ATCTATAGAATAGAAGAAGT+TGG 0.403398 1_2:-71635059 None:intergenic
CTTTGTGTCCTATCTGCTAC+AGG 0.407215 1_2:-71636174 None:intergenic
AAGAGTTTGTGAAACAGTAT+AGG 0.409635 1_2:+71635737 Msa0089870:CDS
AGTGGTGAATCCCATAGATT+TGG 0.415385 1_2:-71634558 None:intergenic
CAGAGGGCAGTATCTGGCTT+TGG 0.416018 1_2:+71634979 Msa0089870:CDS
CACTGGTTGCTTCCCCTAAG+AGG 0.417880 1_2:+71634438 Msa0089870:CDS
TATGTTCCATCTATTATGTC+TGG 0.422350 1_2:+71637975 Msa0089870:three_prime_UTR
ATCTTGCTGCTTCTTATCCA+TGG 0.424251 1_2:-71632755 None:intergenic
AATGCACATCCAAGCAATAT+AGG 0.426423 1_2:-71635244 None:intergenic
GACCAAAGATGCCAAAATTA+GGG 0.426826 1_2:+71636149 Msa0089870:CDS
TTACGATTCTCTATGGAAAT+GGG 0.429895 1_2:+71633045 Msa0089870:CDS
AGTCACCGCGATATAGTAGA+TGG 0.432401 1_2:+71637932 Msa0089870:three_prime_UTR
GTAATTTACCTAGATTTCAA+TGG 0.434851 1_2:-71637756 None:intergenic
TGATCAGTGACTATAACTTT+GGG 0.440778 1_2:-71635340 None:intergenic
AAATGTTCCATTTCCCATCT+GGG 0.441346 1_2:-71634742 None:intergenic
TTGAACTCCATGGTGATGTT+TGG 0.443678 1_2:+71635572 Msa0089870:CDS
TTGCTGTGAAAGTGTGGATC+AGG 0.445132 1_2:-71637513 None:intergenic
TCAAAACATTGGGTCAATCA+TGG 0.447302 1_2:+71634934 Msa0089870:CDS
GTGATACCAGACATAATAGA+TGG 0.447657 1_2:-71637981 None:intergenic
TAATTTACCTAGATTTCAAT+GGG 0.448920 1_2:-71637755 None:intergenic
GTTGAAGTGTTGGGTGTAGC+TGG 0.449517 1_2:+71635901 Msa0089870:CDS
GTTCATGTAGGGAGGGCAAT+TGG 0.449744 1_2:+71637328 Msa0089870:intron
TCTATAGAATAGAAGAAGTT+GGG 0.462776 1_2:-71635058 None:intergenic
CTGCAACTGTCAGTGGTGCT+TGG 0.462967 1_2:+71633016 Msa0089870:CDS
CACTCCCAACCTATATTGCT+TGG 0.465721 1_2:+71635235 Msa0089870:CDS
GGGAGATGGGCAAGTTATGC+TGG 0.466240 1_2:+71635006 Msa0089870:CDS
GCAGTATCTGGCTTTGGATG+AGG 0.466634 1_2:+71634985 Msa0089870:CDS
TCAAGATACCCTGCAGCAAA+TGG 0.469548 1_2:+71636596 Msa0089870:CDS
ACTTAAATCTCCTTCACCTT+GGG 0.470138 1_2:+71635828 Msa0089870:CDS
GAGAAAATGTTTCGGTATCA+TGG 0.471252 1_2:+71633080 Msa0089870:CDS
GTTGAAATGTCTAGACAATC+TGG 0.471543 1_2:+71634905 Msa0089870:CDS
GAAATTCCAAGTTGAAGTGT+TGG 0.475026 1_2:+71635891 Msa0089870:CDS
AGCAACATTATAACTCTCTT+CGG 0.478706 1_2:-71636271 None:intergenic
ATGCCAAATTCGCGTGCTCT+AGG 0.479668 1_2:+71634627 Msa0089870:CDS
AGGGGCATAGCTTTCTTTGA+AGG 0.480618 1_2:+71634458 Msa0089870:CDS
GCAATATAGGTTGGGAGTGA+TGG 0.483077 1_2:-71635231 None:intergenic
ACTGGTTGCTTCCCCTAAGA+GGG 0.487153 1_2:+71634439 Msa0089870:CDS
AAATTCCAAGTTGAAGTGTT+GGG 0.488182 1_2:+71635892 Msa0089870:CDS
CTGGTGGCTGTCAAAACATT+GGG 0.488703 1_2:+71634924 Msa0089870:CDS
GTATTTCAAGCATATTCAAA+AGG 0.489011 1_2:+71635030 Msa0089870:CDS
GTCAAACTGTTCATCTGTCC+AGG 0.491245 1_2:-71635521 None:intergenic
GTGTAGCTGGATGTCAATCT+AGG 0.493252 1_2:+71635914 Msa0089870:CDS
TTCACTCATTGTACGAAGAC+CGG 0.494147 1_2:+71635596 Msa0089870:CDS
CTGGCTTTGGATGAGGGAGA+TGG 0.494760 1_2:+71634992 Msa0089870:CDS
ACTCCAACAAAAGGAGCAAA+AGG 0.494816 1_2:-71635205 None:intergenic
ATCCAATTGTAGCCGGGCTG+CGG 0.496113 1_2:-71634326 None:intergenic
AAATGTTTCGGTATCATGGC+AGG 0.497190 1_2:+71633084 Msa0089870:CDS
ATCTATTATGTCTGGTATCA+CGG 0.498288 1_2:+71637983 Msa0089870:three_prime_UTR
CTCTATGGAAATGGGTTCCA+TGG 0.498375 1_2:+71633053 Msa0089870:CDS
CACATCCAAGCAATATAGGT+TGG 0.500060 1_2:-71635240 None:intergenic
ATGGAAATGGGTTCCATGGA+TGG 0.500788 1_2:+71633057 Msa0089870:CDS
GTTTCAAATTCAATGCCGTT+AGG 0.501314 1_2:-71634500 None:intergenic
AGCAGGAATCCAATTGTAGC+CGG 0.501519 1_2:-71634333 None:intergenic
CACTTAAATCTCCTTCACCT+TGG 0.501635 1_2:+71635827 Msa0089870:CDS
GATAAGAAGCAGCAAGATGA+AGG 0.501882 1_2:+71632760 Msa0089870:CDS
AAAATTCAAAATGAACTTGA+CGG 0.502637 1_2:+71637789 Msa0089870:three_prime_UTR
CGAAAATGATATGCCAAAGC+TGG 0.503037 1_2:-71634800 None:intergenic
AGTACCATAATATCCATTAA+GGG 0.503128 1_2:-71636823 None:intergenic
TGATGGTTCACTCCAACAAA+AGG 0.509844 1_2:-71635214 None:intergenic
ATGGATGGGAGAAAATGTTT+CGG 0.509882 1_2:+71633072 Msa0089870:CDS
GTTACATGAGGTAAACTTCA+AGG 0.510286 1_2:-71637706 None:intergenic
AGTATTGCGTTGAGTGAAGA+AGG 0.512046 1_2:+71636240 Msa0089870:CDS
GGTGAAGGAGATTTAAGTGC+AGG 0.515427 1_2:-71635823 None:intergenic
GCATCACACGGGTGGTGCAC+TGG 0.518829 1_2:+71634421 Msa0089870:CDS
CAATCACCTCACAGCTTCTG+AGG 0.522696 1_2:-71637584 None:intergenic
CAGTATCTGGCTTTGGATGA+GGG 0.524524 1_2:+71634986 Msa0089870:CDS
CAAGAGTATGCCAAATCTAT+GGG 0.524696 1_2:+71634548 Msa0089870:CDS
TACAGTAAGTGGCCGCAGCC+CGG 0.528136 1_2:+71634314 Msa0089870:CDS
ACATCCAAGCAATATAGGTT+GGG 0.528400 1_2:-71635239 None:intergenic
CAAAACATTGGGTCAATCAT+GGG 0.529150 1_2:+71634935 Msa0089870:CDS
TCTATGGCTCCGAGCCATGA+TGG 0.529480 1_2:+71637187 Msa0089870:CDS
GGGGCATAGCTTTCTTTGAA+GGG 0.530599 1_2:+71634459 Msa0089870:CDS
TTGTTTGGTTACTGAGGACA+TGG 0.530723 1_2:+71635293 Msa0089870:CDS
TCTTGAGCGTCGACAAGTAC+AGG 0.531111 1_2:-71636579 None:intergenic
TCAACACAGCATGCAAGGCC+TGG 0.531717 1_2:+71637011 Msa0089870:CDS
CACTTGAACAACCGCAACGT+TGG 0.534327 1_2:-71636098 None:intergenic
TGGCTTTGGATGAGGGAGAT+GGG 0.535356 1_2:+71634993 Msa0089870:CDS
AAATTCAAAATGAACTTGAC+GGG 0.536740 1_2:+71637790 Msa0089870:three_prime_UTR
AGCTTTCTTTGAAGGGGACA+CGG 0.537323 1_2:+71634466 Msa0089870:CDS
AAACACAAACCATTTGCTGC+AGG 0.538027 1_2:-71636605 None:intergenic
GAGGACATGGCTTAGAGCGA+TGG 0.543287 1_2:+71635306 Msa0089870:CDS
GAAAAGCAATGACGTACACT+TGG 0.544275 1_2:-71635400 None:intergenic
CTATGGCTCCGAGCCATGAT+GGG 0.544403 1_2:+71637188 Msa0089870:CDS
CTGAAGGCTATATCCAAAAG+TGG 0.546535 1_2:-71637366 None:intergenic
CTACACCCAACACTTCAACT+TGG 0.546709 1_2:-71635897 None:intergenic
TTAGGGAACCTGTAGCAGAT+AGG 0.546715 1_2:+71636166 Msa0089870:CDS
CTCGGAGCCATAGAATTCAA+TGG 0.548526 1_2:-71637178 None:intergenic
TATATTGCTTGGATGTGCAT+TGG 0.548998 1_2:+71635246 Msa0089870:CDS
TCTGGTGGCTGTCAAAACAT+TGG 0.549465 1_2:+71634923 Msa0089870:CDS
CTCATTATATCATGAAGAGA+TGG 0.550080 1_2:+71636127 Msa0089870:CDS
GAACACAACAAAGCATTCAT+GGG 0.550109 1_2:+71637218 Msa0089870:CDS
TTCACTCCATCTAAGGTGGA+TGG 0.551670 1_2:-71637839 None:intergenic
AAATTCGCGTGCTCTAGGTA+TGG 0.552712 1_2:+71634632 Msa0089870:CDS
CCTCAGTAACCAAACAAAAG+TGG 0.552907 1_2:-71635287 None:intergenic
CACTCAATGCATGTCTGCAA+AGG 0.555274 1_2:-71636071 None:intergenic
CTATATCCAAAAGTGGTTGT+CGG 0.558538 1_2:-71637359 None:intergenic
TGTCAATCTAGGACAGAGGT+TGG 0.561454 1_2:+71635925 Msa0089870:CDS
GAACACAACTAGGAAAAGAA+AGG 0.562569 1_2:+71636440 Msa0089870:CDS
CCAAAATACCCATCATGGCT+CGG 0.565207 1_2:-71637196 None:intergenic
TCAGCAGAATGTGCAAGGAC+TGG 0.567200 1_2:+71636845 Msa0089870:CDS
GTTAATCAACACAGCATGCA+AGG 0.568293 1_2:+71637006 Msa0089870:CDS
GTAAGAAGAGGAACACAACT+AGG 0.569051 1_2:+71636430 Msa0089870:CDS
CTTCAAAACCAAGTAAGAAG+AGG 0.570332 1_2:+71636418 Msa0089870:CDS
GTGTTCCAAAATACCCATCA+TGG 0.572223 1_2:-71637201 None:intergenic
CTCAGTAACCAAACAAAAGT+GGG 0.573591 1_2:-71635286 None:intergenic
TTTCAAGCATATTCAAAAGG+AGG 0.574379 1_2:+71635033 Msa0089870:CDS
CTCTTCATGATATAATGAGA+TGG 0.574857 1_2:-71636123 None:intergenic
GCAGGAATCCAATTGTAGCC+GGG 0.576667 1_2:-71634332 None:intergenic
GTGACTATATTTGAACTCCA+TGG 0.577467 1_2:+71635562 Msa0089870:CDS
GTAAATAACTCTAACGACAA+TGG 0.578738 1_2:+71636333 Msa0089870:CDS
GGGCATAGCTTTCTTTGAAG+GGG 0.579841 1_2:+71634460 Msa0089870:CDS
GGACACAAAGGATACAAACT+AGG 0.580462 1_2:+71636187 Msa0089870:CDS
TGGAAATGGGTTCCATGGAT+GGG 0.580688 1_2:+71633058 Msa0089870:CDS
AGGACATGGCTTAGAGCGAT+GGG 0.585225 1_2:+71635307 Msa0089870:CDS
GAACTGTTGCTGTGAAAGTG+TGG 0.585833 1_2:-71637519 None:intergenic
GGTGCAGAAACTGGCAACAA+TGG 0.585898 1_2:+71636354 Msa0089870:CDS
TCAAATTCAATGCCGTTAGG+TGG 0.590422 1_2:-71634497 None:intergenic
AAAGTTCACTCCATCTAAGG+TGG 0.592009 1_2:-71637843 None:intergenic
TTCAAGCACACCGGAAACAA+AGG 0.592690 1_2:+71632987 Msa0089870:CDS
CACACATCATTATAACGTTG+AGG 0.592933 1_2:-71636210 None:intergenic
TCTAGGACAGAGGTTGGAGA+TGG 0.594905 1_2:+71635931 Msa0089870:CDS
AAAGTGGGTACCGACGTACA+TGG 0.600111 1_2:+71635621 Msa0089870:CDS
GCTAGTTCATCAAAATGGAA+TGG 0.603258 1_2:+71634353 Msa0089870:CDS
GCAAAGGCTGCAACTGTCAG+TGG 0.603434 1_2:+71633009 Msa0089870:CDS
AACACAAACCATTTGCTGCA+GGG 0.603531 1_2:-71636604 None:intergenic
GAAAGCTATGCCCCTCTTAG+GGG 0.607330 1_2:-71634450 None:intergenic
CTGACAAAGTGACAAGGCAT+AGG 0.608799 1_2:-71638021 None:intergenic
GGTACTCAGCAGAATGTGCA+AGG 0.609447 1_2:+71636840 Msa0089870:CDS
CGAGTTATCAGTTTGACAGA+GGG 0.612110 1_2:+71634963 Msa0089870:CDS
AAGTGGGTACCGACGTACAT+GGG 0.612237 1_2:+71635622 Msa0089870:CDS
TTAATGGAGCCACCTCATGA+TGG 0.620785 1_2:+71636976 Msa0089870:CDS
AACAGTTTGACATGAGATGG+TGG 0.621739 1_2:+71635533 Msa0089870:CDS
AAACTGCATCATTAAAGCTG+AGG 0.622221 1_2:-71635144 None:intergenic
CTGGTTGCTTCCCCTAAGAG+GGG 0.625137 1_2:+71634440 Msa0089870:CDS
GGAGTAACACCTGAGTCTGA+TGG 0.629153 1_2:+71634653 Msa0089870:CDS
AAAAGCAATGACGTACACTT+GGG 0.629160 1_2:-71635399 None:intergenic
ACTGTCGGAACGTTGAGGTG+TGG 0.629360 1_2:-71635668 None:intergenic
CTGCTCCTACCATCAGACTC+AGG 0.632022 1_2:-71634662 None:intergenic
AGTTCATCAAAATGGAATGG+TGG 0.634115 1_2:+71634356 Msa0089870:CDS
AAAGAAAGAGTTCACACTGT+CGG 0.634665 1_2:-71635683 None:intergenic
ACAACAAAGCATTCATGGGA+TGG 0.635224 1_2:+71637222 Msa0089870:CDS
CATGGCTTAGAGCGATGGGA+GGG 0.635529 1_2:+71635311 Msa0089870:CDS
TCTTCTGAATAGGTATGATG+AGG 0.638772 1_2:+71635765 Msa0089870:CDS
TTGAGTGTTCTCCAACGTTG+CGG 0.639483 1_2:+71636087 Msa0089870:CDS
AGTGCAGTGAGTGGAAGTAT+GGG 0.641203 1_2:+71634380 Msa0089870:CDS
GTCAATGAAGAGCATCACAC+GGG 0.641639 1_2:+71634410 Msa0089870:CDS
CACACCGGAAACAAAGGCAA+AGG 0.644268 1_2:+71632993 Msa0089870:CDS
GGTATCATGTTCAAGCACAC+CGG 0.644645 1_2:+71632978 Msa0089870:CDS
ATGAACAGTTTGACATGAGA+TGG 0.648940 1_2:+71635530 Msa0089870:CDS
TGGATGTCAATCTAGGACAG+AGG 0.649330 1_2:+71635921 Msa0089870:CDS
ACATGGCTTAGAGCGATGGG+AGG 0.651552 1_2:+71635310 Msa0089870:CDS
AATGGTGGTAGTGCAGTGAG+TGG 0.652328 1_2:+71634371 Msa0089870:CDS
TATAGTTCAAGATTACGAGA+AGG 0.655112 1_2:+71635969 Msa0089870:CDS
TTCACACTGTCGGAACGTTG+AGG 0.659741 1_2:-71635673 None:intergenic
CTATTCTATAGATTTAAACG+AGG 0.660746 1_2:+71635069 Msa0089870:CDS
ACATAGTAACCATCATGAGG+TGG 0.662349 1_2:-71636985 None:intergenic
ACGAGTTATCAGTTTGACAG+AGG 0.665307 1_2:+71634962 Msa0089870:CDS
TGTCAATGAAGAGCATCACA+CGG 0.667976 1_2:+71634409 Msa0089870:CDS
AATGAAGAGCATCACACGGG+TGG 0.670295 1_2:+71634413 Msa0089870:CDS
TAACACCTGAGTCTGATGGT+AGG 0.675623 1_2:+71634657 Msa0089870:CDS
AAATACAGGAAGGTTACATG+AGG 0.676957 1_2:-71637718 None:intergenic
CTGTAGCAGATAGGACACAA+AGG 0.688770 1_2:+71636175 Msa0089870:CDS
AGTGAAACCAAACATCACCA+TGG 0.690952 1_2:-71635579 None:intergenic
TTAACATAGTAACCATCATG+AGG 0.693243 1_2:-71636988 None:intergenic
TTGGAACGAGTTGAGCTCAG+AGG 0.703393 1_2:+71636011 Msa0089870:CDS
ACAGTTTGACATGAGATGGT+GGG 0.706939 1_2:+71635534 Msa0089870:CDS
AGATTCCATCTACTATATCG+CGG 0.707268 1_2:-71637937 None:intergenic
TAGCTTCCTCAGAAGCTGTG+AGG 0.718551 1_2:+71637578 Msa0089870:three_prime_UTR
ATGGAACATAATGAATACCA+CGG 0.720170 1_2:-71637962 None:intergenic
AAGACATCTCCCATGTACGT+CGG 0.734961 1_2:-71635631 None:intergenic
GAAATGTCTAGACAATCTGG+TGG 0.763154 1_2:+71634908 Msa0089870:CDS
TAGTAGATGGAATCTCACCG+TGG 0.811751 1_2:+71637945 Msa0089870:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTAATTATTAATTATAA+AGG + chr1_2:71637082-71637101 Msa0089870:intron 0.0%
!!! TTTTTTATATCAATATTCTA+AGG + chr1_2:71633126-71633145 Msa0089870:intron 10.0%
!! AAAATTTCAAAATTGAATTA+TGG - chr1_2:71633645-71633664 None:intergenic 10.0%
!! TATTAAAAATAATAATGACG+TGG + chr1_2:71633286-71633305 Msa0089870:intron 15.0%
!! ATCAATAATTAGATAAGATT+AGG + chr1_2:71633398-71633417 Msa0089870:intron 15.0%
!! TCAATAATTAGATAAGATTA+GGG + chr1_2:71633399-71633418 Msa0089870:intron 15.0%
!! AAAAAATAAACAAAAACACA+AGG + chr1_2:71633515-71633534 Msa0089870:intron 15.0%
!! AAAAATAAACAAAAACACAA+GGG + chr1_2:71633516-71633535 Msa0089870:intron 15.0%
!! ATTATTATTACGCTTATTTA+TGG + chr1_2:71633835-71633854 Msa0089870:intron 15.0%
!! ATAATGTTAACATATACTTA+AGG - chr1_2:71634182-71634201 None:intergenic 15.0%
!!! GAACATTTTTGAATTTATAA+AGG + chr1_2:71634757-71634776 Msa0089870:CDS 15.0%
!!! AACGTTTAAGAAATATATTT+TGG + chr1_2:71635095-71635114 Msa0089870:CDS 15.0%
!!! ACGTTTAAGAAATATATTTT+GGG + chr1_2:71635096-71635115 Msa0089870:CDS 15.0%
!! TCTTTACTTGATAAAAATGA+AGG + chr1_2:71632931-71632950 Msa0089870:intron 20.0%
!! TCAATTCTCATAAATCTTAA+AGG - chr1_2:71633165-71633184 None:intergenic 20.0%
!! TTATTGATATATTCTTGCAT+AGG - chr1_2:71633386-71633405 None:intergenic 20.0%
!! AAAATGCAATTCTTAAACTT+TGG - chr1_2:71635496-71635515 None:intergenic 20.0%
!! TTAGATTATACAAATAAGCA+TGG + chr1_2:71636653-71636672 Msa0089870:intron 20.0%
!!! TGCTTAATAGATTGTAATTT+TGG + chr1_2:71636929-71636948 Msa0089870:intron 20.0%
!! AGAAGATTATATTCATGATT+AGG - chr1_2:71637045-71637064 None:intergenic 20.0%
!! TACTTTCCTATGAAATTATT+GGG + chr1_2:71637250-71637269 Msa0089870:intron 20.0%
!! TAATTTCCCAATAATTTCAT+AGG - chr1_2:71637259-71637278 None:intergenic 20.0%
!! CTAATAAGTAACTAAGTATA+TGG - chr1_2:71637410-71637429 None:intergenic 20.0%
!! CAATTTCTATGTAAAAATAC+AGG - chr1_2:71637735-71637754 None:intergenic 20.0%
!! TAATTTACCTAGATTTCAAT+GGG - chr1_2:71637758-71637777 None:intergenic 20.0%
!! AAAATTCAAAATGAACTTGA+CGG + chr1_2:71637789-71637808 Msa0089870:three_prime_UTR 20.0%
!! ATATTCAGAAGAAATGAAAT+TGG - chr1_2:71637904-71637923 None:intergenic 20.0%
! AAACACAGTACAAAAACAAA+TGG + chr1_2:71632786-71632805 Msa0089870:intron 25.0%
! TCTGTAACAAATTTAACGTT+CGG - chr1_2:71632812-71632831 None:intergenic 25.0%
!!! TTAAATTTGTTACAGAGCAA+AGG + chr1_2:71632816-71632835 Msa0089870:intron 25.0%
! CAAAAAGTAATATCTGTTGT+AGG + chr1_2:71632954-71632973 Msa0089870:intron 25.0%
!!! ACGACTTGTCTTATTTTTAT+TGG + chr1_2:71633329-71633348 Msa0089870:intron 25.0%
! ACAACAAAATTAGTAGTAAC+AGG + chr1_2:71633539-71633558 Msa0089870:intron 25.0%
! AATTGAATTATGGATGAGAT+CGG - chr1_2:71633635-71633654 None:intergenic 25.0%
! TGAAGATAATTGTAGCATAA+AGG + chr1_2:71633917-71633936 Msa0089870:intron 25.0%
!! TTTTAATGACTAGAGTTTGA+TGG + chr1_2:71634257-71634276 Msa0089870:intron 25.0%
! TTTGGCATCAATAAATTCTT+TGG - chr1_2:71634615-71634634 None:intergenic 25.0%
! ACATTTCAACATACATCTTT+CGG - chr1_2:71634895-71634914 None:intergenic 25.0%
! GTATTTCAAGCATATTCAAA+AGG + chr1_2:71635030-71635049 Msa0089870:CDS 25.0%
! TCTATAGAATAGAAGAAGTT+GGG - chr1_2:71635061-71635080 None:intergenic 25.0%
! ATCTATAGAATAGAAGAAGT+TGG - chr1_2:71635062-71635081 None:intergenic 25.0%
! CTATTCTATAGATTTAAACG+AGG + chr1_2:71635069-71635088 Msa0089870:CDS 25.0%
! ATAGGTTAATTCTTCTGAAT+AGG + chr1_2:71635755-71635774 Msa0089870:CDS 25.0%
!! TTTCTAGCATTTAAAAGATC+AGG + chr1_2:71636512-71636531 Msa0089870:intron 25.0%
! AGTACCATAATATCCATTAA+GGG - chr1_2:71636826-71636845 None:intergenic 25.0%
! AGAACATTGTAATCATTTGA+TGG - chr1_2:71636887-71636906 None:intergenic 25.0%
! ATTGATATTCATATCGTTGT+AGG + chr1_2:71637153-71637172 Msa0089870:intron 25.0%
! TTGATATTCATATCGTTGTA+GGG + chr1_2:71637154-71637173 Msa0089870:intron 25.0%
! GTACTTTCCTATGAAATTAT+TGG + chr1_2:71637249-71637268 Msa0089870:intron 25.0%
! TACTTATTAGCATTTGAACT+TGG + chr1_2:71637420-71637439 Msa0089870:intron 25.0%
!! TGAATAGAATAATTTGTGCT+TGG + chr1_2:71637448-71637467 Msa0089870:intron 25.0%
! AATTTGTCTCTTCTTTGATA+TGG + chr1_2:71637555-71637574 Msa0089870:three_prime_UTR 25.0%
! AAAAGAGAATTGAAAGAACT+TGG + chr1_2:71637607-71637626 Msa0089870:three_prime_UTR 25.0%
! TTCTATGTAAAAATACAGGA+AGG - chr1_2:71637731-71637750 None:intergenic 25.0%
! GTAATTTACCTAGATTTCAA+TGG - chr1_2:71637759-71637778 None:intergenic 25.0%
! AAATTCAAAATGAACTTGAC+GGG + chr1_2:71637790-71637809 Msa0089870:three_prime_UTR 25.0%
AAAGTAATATCTGTTGTAGG+AGG + chr1_2:71632957-71632976 Msa0089870:intron 30.0%
! GTTTCTTTTACGATTCTCTA+TGG + chr1_2:71633038-71633057 Msa0089870:CDS 30.0%
TTTACGATTCTCTATGGAAA+TGG + chr1_2:71633044-71633063 Msa0089870:CDS 30.0%
TTACGATTCTCTATGGAAAT+GGG + chr1_2:71633045-71633064 Msa0089870:CDS 30.0%
! TATTCTAAGGATGACAAACA+TGG + chr1_2:71633139-71633158 Msa0089870:intron 30.0%
!! ATTTTTATTGGCTGTTTGCA+AGG + chr1_2:71633341-71633360 Msa0089870:intron 30.0%
AGATAAGATTAGGGAAAGAA+AGG + chr1_2:71633408-71633427 Msa0089870:intron 30.0%
!!! AGCTAGGGTTTTGAAAATTT+GGG - chr1_2:71633670-71633689 None:intergenic 30.0%
!!! AAGCTAGGGTTTTGAAAATT+TGG - chr1_2:71633671-71633690 None:intergenic 30.0%
AAAGAAGAAACCTTAAAGAG+CGG - chr1_2:71633767-71633786 None:intergenic 30.0%
TTACGCTTATTTATGGTTTG+TGG + chr1_2:71633842-71633861 Msa0089870:intron 30.0%
AACGTGAATTATGAATGTAG+AGG + chr1_2:71634034-71634053 Msa0089870:intron 30.0%
TTCTAACTGTTTCCAAACAT+GGG - chr1_2:71634103-71634122 None:intergenic 30.0%
ATTCTAACTGTTTCCAAACA+TGG - chr1_2:71634104-71634123 None:intergenic 30.0%
!!! ATGCACTCTTATTTTTTGTC+TGG + chr1_2:71634215-71634234 Msa0089870:intron 30.0%
!! GCTAATTGGAAACTTTGTTT+TGG + chr1_2:71634284-71634303 Msa0089870:CDS 30.0%
CATTTCAACATACATCTTTC+GGG - chr1_2:71634894-71634913 None:intergenic 30.0%
TTTCAAGCATATTCAAAAGG+AGG + chr1_2:71635033-71635052 Msa0089870:CDS 30.0%
!!! CTTATCGTTGCTTTTTATGT+AGG - chr1_2:71635182-71635201 None:intergenic 30.0%
TGATCAGTGACTATAACTTT+GGG - chr1_2:71635343-71635362 None:intergenic 30.0%
TTGATCAGTGACTATAACTT+TGG - chr1_2:71635344-71635363 None:intergenic 30.0%
! CTTTTCTCTTTGTCACATAT+TGG + chr1_2:71635417-71635436 Msa0089870:CDS 30.0%
! ATCACAAAAGACAGATTTTC+AGG - chr1_2:71635451-71635470 None:intergenic 30.0%
!!! AGAATTGCATTTTTAAGTCC+TGG + chr1_2:71635503-71635522 Msa0089870:CDS 30.0%
CTGTTTCACAAACTCTTTAA+GGG - chr1_2:71635734-71635753 None:intergenic 30.0%
ACTGTTTCACAAACTCTTTA+AGG - chr1_2:71635735-71635754 None:intergenic 30.0%
AAGAGTTTGTGAAACAGTAT+AGG + chr1_2:71635737-71635756 Msa0089870:CDS 30.0%
! AAATTCCAAGTTGAAGTGTT+GGG + chr1_2:71635892-71635911 Msa0089870:CDS 30.0%
TATAGTTCAAGATTACGAGA+AGG + chr1_2:71635969-71635988 Msa0089870:CDS 30.0%
!!! ATGAAGAGTTTTTGGTAACT+TGG + chr1_2:71635992-71636011 Msa0089870:CDS 30.0%
! TGTCGATTGTTCGAATATAA+AGG + chr1_2:71636045-71636064 Msa0089870:CDS 30.0%
CTCTTCATGATATAATGAGA+TGG - chr1_2:71636126-71636145 None:intergenic 30.0%
CTCATTATATCATGAAGAGA+TGG + chr1_2:71636127-71636146 Msa0089870:CDS 30.0%
AGCAACATTATAACTCTCTT+CGG - chr1_2:71636274-71636293 None:intergenic 30.0%
GTAAATAACTCTAACGACAA+TGG + chr1_2:71636333-71636352 Msa0089870:CDS 30.0%
TGATACGAGAATCACTTTAT+AGG + chr1_2:71636539-71636558 Msa0089870:intron 30.0%
CAGATCATGAATGAAAAAAG+AGG - chr1_2:71636631-71636650 None:intergenic 30.0%
ATAGAAATGCAATTCTCAAG+AGG - chr1_2:71636688-71636707 None:intergenic 30.0%
!!! CTTTTAGGATAATCTTAGCT+CGG + chr1_2:71636791-71636810 Msa0089870:intron 30.0%
! ATTGCCCTTAATGGATATTA+TGG + chr1_2:71636819-71636838 Msa0089870:CDS 30.0%
GAGTACCATAATATCCATTA+AGG - chr1_2:71636827-71636846 None:intergenic 30.0%
TTAACATAGTAACCATCATG+AGG - chr1_2:71636991-71637010 None:intergenic 30.0%
!! TGATACAAGTTTGCTAACTA+TGG + chr1_2:71637301-71637320 Msa0089870:intron 30.0%
!! GATACAAGTTTGCTAACTAT+GGG + chr1_2:71637302-71637321 Msa0089870:intron 30.0%
TTGCACATAACCTTAATTGT+AGG + chr1_2:71637485-71637504 Msa0089870:intron 30.0%
TAAAAAGTTCACTCCATCTA+AGG - chr1_2:71637849-71637868 None:intergenic 30.0%
ATGGAACATAATGAATACCA+CGG - chr1_2:71637965-71637984 None:intergenic 30.0%
TATGTTCCATCTATTATGTC+TGG + chr1_2:71637975-71637994 Msa0089870:three_prime_UTR 30.0%
ATCTATTATGTCTGGTATCA+CGG + chr1_2:71637983-71638002 Msa0089870:three_prime_UTR 30.0%
ATGGATGGGAGAAAATGTTT+CGG + chr1_2:71633072-71633091 Msa0089870:CDS 35.0%
GAGAAAATGTTTCGGTATCA+TGG + chr1_2:71633080-71633099 Msa0089870:CDS 35.0%
GAAGCTTGAAATTTCACCAT+TGG + chr1_2:71633185-71633204 Msa0089870:intron 35.0%
TTGAAATTTCACCATTGGTG+TGG + chr1_2:71633190-71633209 Msa0089870:intron 35.0%
ATTATTCCATTCCACACCAA+TGG - chr1_2:71633204-71633223 None:intergenic 35.0%
TGGAATGGAATAATAGCAAC+AGG + chr1_2:71633210-71633229 Msa0089870:intron 35.0%
GGAATGGAATAATAGCAACA+GGG + chr1_2:71633211-71633230 Msa0089870:intron 35.0%
ATTAGGGAAAGAAAGGCAAT+GGG + chr1_2:71633415-71633434 Msa0089870:intron 35.0%
!!! GCTAGGGTTTTGAAAATTTG+GGG - chr1_2:71633669-71633688 None:intergenic 35.0%
CGAGTACGAAAAATATGAAG+TGG - chr1_2:71633727-71633746 None:intergenic 35.0%
!! TCATTTTTCACCGCTCTTTA+AGG + chr1_2:71633754-71633773 Msa0089870:intron 35.0%
AGTGTGAAGAACAAAACACA+GGG - chr1_2:71633800-71633819 None:intergenic 35.0%
AAGTGTGAAGAACAAAACAC+AGG - chr1_2:71633801-71633820 None:intergenic 35.0%
! TATGGTTTGTGGAAAATGCT+TGG + chr1_2:71633853-71633872 Msa0089870:intron 35.0%
TGGAATGCTAAAACATGATG+CGG + chr1_2:71633873-71633892 Msa0089870:intron 35.0%
GTGAATTATGAATGTAGAGG+TGG + chr1_2:71634037-71634056 Msa0089870:intron 35.0%
! AGTTTGATGGTTTCGCTAAT+TGG + chr1_2:71634270-71634289 Msa0089870:CDS 35.0%
! TTGGTGCATTTTACAGTAAG+TGG + chr1_2:71634303-71634322 Msa0089870:CDS 35.0%
TTCCTGCTAGTTCATCAAAA+TGG + chr1_2:71634348-71634367 Msa0089870:CDS 35.0%
!! TTCCATTTTGATGAACTAGC+AGG - chr1_2:71634353-71634372 None:intergenic 35.0%
GCTAGTTCATCAAAATGGAA+TGG + chr1_2:71634353-71634372 Msa0089870:CDS 35.0%
AGTTCATCAAAATGGAATGG+TGG + chr1_2:71634356-71634375 Msa0089870:CDS 35.0%
GTTTCAAATTCAATGCCGTT+AGG - chr1_2:71634503-71634522 None:intergenic 35.0%
! TCAAGAGTATGCCAAATCTA+TGG + chr1_2:71634547-71634566 Msa0089870:CDS 35.0%
! CAAGAGTATGCCAAATCTAT+GGG + chr1_2:71634548-71634567 Msa0089870:CDS 35.0%
!!! TCTGCTGTTTTTAATGGAAG+TGG - chr1_2:71634579-71634598 None:intergenic 35.0%
!!! TGATCGTCTGCTGTTTTTAA+TGG - chr1_2:71634585-71634604 None:intergenic 35.0%
AAATGTTCCATTTCCCATCT+GGG - chr1_2:71634745-71634764 None:intergenic 35.0%
AAAATGTTCCATTTCCCATC+TGG - chr1_2:71634746-71634765 None:intergenic 35.0%
! TCATGAACTTTTACCAGCTT+TGG + chr1_2:71634787-71634806 Msa0089870:CDS 35.0%
!! CAGCTTTGGCATATCATTTT+CGG + chr1_2:71634801-71634820 Msa0089870:CDS 35.0%
! GCATATCATTTTCGGATTCA+TGG + chr1_2:71634809-71634828 Msa0089870:CDS 35.0%
GTTGAAATGTCTAGACAATC+TGG + chr1_2:71634905-71634924 Msa0089870:CDS 35.0%
TCAAAACATTGGGTCAATCA+TGG + chr1_2:71634934-71634953 Msa0089870:CDS 35.0%
CAAAACATTGGGTCAATCAT+GGG + chr1_2:71634935-71634954 Msa0089870:CDS 35.0%
AAACTGCATCATTAAAGCTG+AGG - chr1_2:71635147-71635166 None:intergenic 35.0%
ACATCCAAGCAATATAGGTT+GGG - chr1_2:71635242-71635261 None:intergenic 35.0%
AATGCACATCCAAGCAATAT+AGG - chr1_2:71635247-71635266 None:intergenic 35.0%
TATATTGCTTGGATGTGCAT+TGG + chr1_2:71635246-71635265 Msa0089870:CDS 35.0%
CTCAGTAACCAAACAAAAGT+GGG - chr1_2:71635289-71635308 None:intergenic 35.0%
TTCTTCAATTGCTTCCTTCA+AGG - chr1_2:71635374-71635393 None:intergenic 35.0%
AAAAGCAATGACGTACACTT+GGG - chr1_2:71635402-71635421 None:intergenic 35.0%
ATGAACAGTTTGACATGAGA+TGG + chr1_2:71635530-71635549 Msa0089870:CDS 35.0%
GTGACTATATTTGAACTCCA+TGG + chr1_2:71635562-71635581 Msa0089870:CDS 35.0%
AAAGAAAGAGTTCACACTGT+CGG - chr1_2:71635686-71635705 None:intergenic 35.0%
TCTTCTGAATAGGTATGATG+AGG + chr1_2:71635765-71635784 Msa0089870:CDS 35.0%
ACTTAAATCTCCTTCACCTT+GGG + chr1_2:71635828-71635847 Msa0089870:CDS 35.0%
!! ATTTGTTTTTCCCAAGGTGA+AGG - chr1_2:71635841-71635860 None:intergenic 35.0%
!! GTTGACATTTGTTTTTCCCA+AGG - chr1_2:71635847-71635866 None:intergenic 35.0%
! GAAATTCCAAGTTGAAGTGT+TGG + chr1_2:71635891-71635910 Msa0089870:CDS 35.0%
GACCAAAGATGCCAAAATTA+GGG + chr1_2:71636149-71636168 Msa0089870:CDS 35.0%
!! TTCCCTAATTTTGGCATCTT+TGG - chr1_2:71636154-71636173 None:intergenic 35.0%
CACACATCATTATAACGTTG+AGG - chr1_2:71636213-71636232 None:intergenic 35.0%
!!! CTTACTTGGTTTTGAAGCAA+GGG - chr1_2:71636415-71636434 None:intergenic 35.0%
!!! TCTTACTTGGTTTTGAAGCA+AGG - chr1_2:71636416-71636435 None:intergenic 35.0%
CTTCAAAACCAAGTAAGAAG+AGG + chr1_2:71636418-71636437 Msa0089870:CDS 35.0%
GAACACAACTAGGAAAAGAA+AGG + chr1_2:71636440-71636459 Msa0089870:CDS 35.0%
!! GCTTACGTGTTAAGTTGTTT+TGG + chr1_2:71636488-71636507 Msa0089870:intron 35.0%
AAATGCAATTCTCAAGAGGA+TGG - chr1_2:71636684-71636703 None:intergenic 35.0%
! ACATGTGCTTTCGTTCTTTT+AGG + chr1_2:71636776-71636795 Msa0089870:intron 35.0%
GCATGTACAGTTGAACTTAA+TGG + chr1_2:71636960-71636979 Msa0089870:intron 35.0%
! GAACACAACAAAGCATTCAT+GGG + chr1_2:71637218-71637237 Msa0089870:CDS 35.0%
CTATATCCAAAAGTGGTTGT+CGG - chr1_2:71637362-71637381 None:intergenic 35.0%
TAAGGTTATGTGCAAACAGA+CGG - chr1_2:71637480-71637499 None:intergenic 35.0%
GTTACATGAGGTAAACTTCA+AGG - chr1_2:71637709-71637728 None:intergenic 35.0%
AAATACAGGAAGGTTACATG+AGG - chr1_2:71637721-71637740 None:intergenic 35.0%
GAAATTGCCCATTGAAATCT+AGG + chr1_2:71637748-71637767 Msa0089870:three_prime_UTR 35.0%
! TGGATGGATGTTTTCATCAA+TGG - chr1_2:71637826-71637845 None:intergenic 35.0%
! ATTGAACCTGACCACATTTT+TGG + chr1_2:71637870-71637889 Msa0089870:three_prime_UTR 35.0%
TGGATTTCTCACCAAAAATG+TGG - chr1_2:71637884-71637903 None:intergenic 35.0%
AGATTCCATCTACTATATCG+CGG - chr1_2:71637940-71637959 None:intergenic 35.0%
GTGATACCAGACATAATAGA+TGG - chr1_2:71637984-71638003 None:intergenic 35.0%
GATAAGAAGCAGCAAGATGA+AGG + chr1_2:71632760-71632779 Msa0089870:CDS 40.0%
! GAAACATTTTCTCCCATCCA+TGG - chr1_2:71633073-71633092 None:intergenic 40.0%
AAATGTTTCGGTATCATGGC+AGG + chr1_2:71633084-71633103 Msa0089870:CDS 40.0%
ATTTCACCATTGGTGTGGAA+TGG + chr1_2:71633195-71633214 Msa0089870:intron 40.0%
GGAACAGAAAAGGATGATGA+TGG + chr1_2:71633238-71633257 Msa0089870:intron 40.0%
!! ACAGAAAAGGATGATGATGG+TGG + chr1_2:71633241-71633260 Msa0089870:intron 40.0%
! TTTATTGGCTGTTTGCAAGG+AGG + chr1_2:71633344-71633363 Msa0089870:intron 40.0%
GATTAGGGAAAGAAAGGCAA+TGG + chr1_2:71633414-71633433 Msa0089870:intron 40.0%
GTGTGAAGAACAAAACACAG+GGG - chr1_2:71633799-71633818 None:intergenic 40.0%
GGAATGCTAAAACATGATGC+GGG + chr1_2:71633874-71633893 Msa0089870:intron 40.0%
TCTGTTCAGTGTTCCTGATT+GGG + chr1_2:71634074-71634093 Msa0089870:intron 40.0%
!! TGTCAATGAAGAGCATCACA+CGG + chr1_2:71634409-71634428 Msa0089870:CDS 40.0%
TCAAATTCAATGCCGTTAGG+TGG - chr1_2:71634500-71634519 None:intergenic 40.0%
AGTGGTGAATCCCATAGATT+TGG - chr1_2:71634561-71634580 None:intergenic 40.0%
ACGTGAAGAAAAACCCAGAT+GGG + chr1_2:71634729-71634748 Msa0089870:CDS 40.0%
AGAAAAACCCAGATGGGAAA+TGG + chr1_2:71634735-71634754 Msa0089870:CDS 40.0%
CGAAAATGATATGCCAAAGC+TGG - chr1_2:71634803-71634822 None:intergenic 40.0%
GAAATGTCTAGACAATCTGG+TGG + chr1_2:71634908-71634927 Msa0089870:CDS 40.0%
ACGAGTTATCAGTTTGACAG+AGG + chr1_2:71634962-71634981 Msa0089870:CDS 40.0%
CGAGTTATCAGTTTGACAGA+GGG + chr1_2:71634963-71634982 Msa0089870:CDS 40.0%
! TTGCCTTTTGCTCCTTTTGT+TGG + chr1_2:71635202-71635221 Msa0089870:CDS 40.0%
ACTCCAACAAAAGGAGCAAA+AGG - chr1_2:71635208-71635227 None:intergenic 40.0%
TGATGGTTCACTCCAACAAA+AGG - chr1_2:71635217-71635236 None:intergenic 40.0%
CACATCCAAGCAATATAGGT+TGG - chr1_2:71635243-71635262 None:intergenic 40.0%
!! AGACTAAGCCCACTTTTGTT+TGG + chr1_2:71635278-71635297 Msa0089870:CDS 40.0%
CCTCAGTAACCAAACAAAAG+TGG - chr1_2:71635290-71635309 None:intergenic 40.0%
!! CCACTTTTGTTTGGTTACTG+AGG + chr1_2:71635287-71635306 Msa0089870:CDS 40.0%
TTGTTTGGTTACTGAGGACA+TGG + chr1_2:71635293-71635312 Msa0089870:CDS 40.0%
TGATCAAGACAAAGCCTTGA+AGG + chr1_2:71635357-71635376 Msa0089870:CDS 40.0%
GAAAAGCAATGACGTACACT+TGG - chr1_2:71635403-71635422 None:intergenic 40.0%
AACAGTTTGACATGAGATGG+TGG + chr1_2:71635533-71635552 Msa0089870:CDS 40.0%
ACAGTTTGACATGAGATGGT+GGG + chr1_2:71635534-71635553 Msa0089870:CDS 40.0%
! TTGAACTCCATGGTGATGTT+TGG + chr1_2:71635572-71635591 Msa0089870:CDS 40.0%
AGTGAAACCAAACATCACCA+TGG - chr1_2:71635582-71635601 None:intergenic 40.0%
TTCACTCATTGTACGAAGAC+CGG + chr1_2:71635596-71635615 Msa0089870:CDS 40.0%
!! ATGGGAGATGTCTTTTTAGC+TGG + chr1_2:71635640-71635659 Msa0089870:CDS 40.0%
CACTTAAATCTCCTTCACCT+TGG + chr1_2:71635827-71635846 Msa0089870:CDS 40.0%
! CGAGAAGGATGAAGAGTTTT+TGG + chr1_2:71635984-71636003 Msa0089870:CDS 40.0%
GGACCAAAGATGCCAAAATT+AGG + chr1_2:71636148-71636167 Msa0089870:CDS 40.0%
! TGCTACAGGTTCCCTAATTT+TGG - chr1_2:71636163-71636182 None:intergenic 40.0%
GGACACAAAGGATACAAACT+AGG + chr1_2:71636187-71636206 Msa0089870:CDS 40.0%
GTTGTGTTCCTCTTCTTACT+TGG - chr1_2:71636429-71636448 None:intergenic 40.0%
GTAAGAAGAGGAACACAACT+AGG + chr1_2:71636430-71636449 Msa0089870:CDS 40.0%
AGGAAAAGAAAGGTCAGTTC+TGG + chr1_2:71636450-71636469 Msa0089870:intron 40.0%
! AAAGGTCAGTTCTGGTAATG+TGG + chr1_2:71636458-71636477 Msa0089870:intron 40.0%
! AACACAAACCATTTGCTGCA+GGG - chr1_2:71636607-71636626 None:intergenic 40.0%
! AAACACAAACCATTTGCTGC+AGG - chr1_2:71636608-71636627 None:intergenic 40.0%
ACATAGTAACCATCATGAGG+TGG - chr1_2:71636988-71637007 None:intergenic 40.0%
GTTAATCAACACAGCATGCA+AGG + chr1_2:71637006-71637025 Msa0089870:CDS 40.0%
CATGATTAGGACAACTTACC+AGG - chr1_2:71637032-71637051 None:intergenic 40.0%
GTAGGGTCCATTGAATTCTA+TGG + chr1_2:71637171-71637190 Msa0089870:intron 40.0%
GTGTTCCAAAATACCCATCA+TGG - chr1_2:71637204-71637223 None:intergenic 40.0%
! GGAACACAACAAAGCATTCA+TGG + chr1_2:71637217-71637236 Msa0089870:CDS 40.0%
! ACAACAAAGCATTCATGGGA+TGG + chr1_2:71637222-71637241 Msa0089870:CDS 40.0%
!! CAAGTTTGCTAACTATGGGT+TGG + chr1_2:71637306-71637325 Msa0089870:intron 40.0%
!! AACTATGGGTTGGTTCATGT+AGG + chr1_2:71637316-71637335 Msa0089870:intron 40.0%
!! ACTATGGGTTGGTTCATGTA+GGG + chr1_2:71637317-71637336 Msa0089870:intron 40.0%
CTGAAGGCTATATCCAAAAG+TGG - chr1_2:71637369-71637388 None:intergenic 40.0%
! CACTTTTGGATATAGCCTTC+AGG + chr1_2:71637367-71637386 Msa0089870:CDS 40.0%
CATGTCATGAACAAACCTGA+AGG - chr1_2:71637385-71637404 None:intergenic 40.0%
TCAGGCTCATCCTACAATTA+AGG - chr1_2:71637498-71637517 None:intergenic 40.0%
AAACATCCATCCACCTTAGA+TGG + chr1_2:71637833-71637852 Msa0089870:three_prime_UTR 40.0%
AAAGTTCACTCCATCTAAGG+TGG - chr1_2:71637846-71637865 None:intergenic 40.0%
TTCTCACCAAAAATGTGGTC+AGG - chr1_2:71637879-71637898 None:intergenic 40.0%
GGTATCATGTTCAAGCACAC+CGG + chr1_2:71632978-71632997 Msa0089870:CDS 45.0%
TTCAAGCACACCGGAAACAA+AGG + chr1_2:71632987-71633006 Msa0089870:CDS 45.0%
! CTCTATGGAAATGGGTTCCA+TGG + chr1_2:71633053-71633072 Msa0089870:CDS 45.0%
! ATGGAAATGGGTTCCATGGA+TGG + chr1_2:71633057-71633076 Msa0089870:CDS 45.0%
! TGGAAATGGGTTCCATGGAT+GGG + chr1_2:71633058-71633077 Msa0089870:CDS 45.0%
GAATAATAGCAACAGGGTCG+TGG + chr1_2:71633217-71633236 Msa0089870:intron 45.0%
GAAAGAAAGGCAATGGGATG+CGG + chr1_2:71633421-71633440 Msa0089870:intron 45.0%
AAACGCGAGTGAGAAAGCTA+GGG - chr1_2:71633685-71633704 None:intergenic 45.0%
AAAACGCGAGTGAGAAAGCT+AGG - chr1_2:71633686-71633705 None:intergenic 45.0%
GAACAAAACACAGGGGAAGA+AGG - chr1_2:71633792-71633811 None:intergenic 45.0%
CTCTGTTCAGTGTTCCTGAT+TGG + chr1_2:71634073-71634092 Msa0089870:intron 45.0%
AGCAGGAATCCAATTGTAGC+CGG - chr1_2:71634336-71634355 None:intergenic 45.0%
TAGTGCAGTGAGTGGAAGTA+TGG + chr1_2:71634379-71634398 Msa0089870:CDS 45.0%
! AGTGCAGTGAGTGGAAGTAT+GGG + chr1_2:71634380-71634399 Msa0089870:CDS 45.0%
!! GTCAATGAAGAGCATCACAC+GGG + chr1_2:71634410-71634429 Msa0089870:CDS 45.0%
AGAAAGCTATGCCCCTCTTA+GGG - chr1_2:71634454-71634473 None:intergenic 45.0%
AAGAAAGCTATGCCCCTCTT+AGG - chr1_2:71634455-71634474 None:intergenic 45.0%
! AGGGGCATAGCTTTCTTTGA+AGG + chr1_2:71634458-71634477 Msa0089870:CDS 45.0%
GGGGCATAGCTTTCTTTGAA+GGG + chr1_2:71634459-71634478 Msa0089870:CDS 45.0%
! GGGCATAGCTTTCTTTGAAG+GGG + chr1_2:71634460-71634479 Msa0089870:CDS 45.0%
! AGCTTTCTTTGAAGGGGACA+CGG + chr1_2:71634466-71634485 Msa0089870:CDS 45.0%
! ACGGATTTTGAGCCACCTAA+CGG + chr1_2:71634485-71634504 Msa0089870:CDS 45.0%
ATACCTAGAGCACGCGAATT+TGG - chr1_2:71634633-71634652 None:intergenic 45.0%
! AAATTCGCGTGCTCTAGGTA+TGG + chr1_2:71634632-71634651 Msa0089870:CDS 45.0%
TAACACCTGAGTCTGATGGT+AGG + chr1_2:71634657-71634676 Msa0089870:CDS 45.0%
CACGTGAAGAAAAACCCAGA+TGG + chr1_2:71634728-71634747 Msa0089870:CDS 45.0%
TCTGGTGGCTGTCAAAACAT+TGG + chr1_2:71634923-71634942 Msa0089870:CDS 45.0%
CTGGTGGCTGTCAAAACATT+GGG + chr1_2:71634924-71634943 Msa0089870:CDS 45.0%
!! CAGTATCTGGCTTTGGATGA+GGG + chr1_2:71634986-71635005 Msa0089870:CDS 45.0%
! GCAATATAGGTTGGGAGTGA+TGG - chr1_2:71635234-71635253 None:intergenic 45.0%
CACTCCCAACCTATATTGCT+TGG + chr1_2:71635235-71635254 Msa0089870:CDS 45.0%
GTCAAACTGTTCATCTGTCC+AGG - chr1_2:71635524-71635543 None:intergenic 45.0%
TGTACGAAGACCGGAAAAAG+TGG + chr1_2:71635605-71635624 Msa0089870:CDS 45.0%
GTACGAAGACCGGAAAAAGT+GGG + chr1_2:71635606-71635625 Msa0089870:CDS 45.0%
AAGACATCTCCCATGTACGT+CGG - chr1_2:71635634-71635653 None:intergenic 45.0%
GGTGAAGGAGATTTAAGTGC+AGG - chr1_2:71635826-71635845 None:intergenic 45.0%
CTACACCCAACACTTCAACT+TGG - chr1_2:71635900-71635919 None:intergenic 45.0%
GTGTAGCTGGATGTCAATCT+AGG + chr1_2:71635914-71635933 Msa0089870:CDS 45.0%
! TGGATGTCAATCTAGGACAG+AGG + chr1_2:71635921-71635940 Msa0089870:CDS 45.0%
! TGTCAATCTAGGACAGAGGT+TGG + chr1_2:71635925-71635944 Msa0089870:CDS 45.0%
CACTCAATGCATGTCTGCAA+AGG - chr1_2:71636074-71636093 None:intergenic 45.0%
TTGAGTGTTCTCCAACGTTG+CGG + chr1_2:71636087-71636106 Msa0089870:CDS 45.0%
TTAGGGAACCTGTAGCAGAT+AGG + chr1_2:71636166-71636185 Msa0089870:CDS 45.0%
CTTTGTGTCCTATCTGCTAC+AGG - chr1_2:71636177-71636196 None:intergenic 45.0%
CTGTAGCAGATAGGACACAA+AGG + chr1_2:71636175-71636194 Msa0089870:CDS 45.0%
AACGACAATGGTGCAGAAAC+TGG + chr1_2:71636345-71636364 Msa0089870:CDS 45.0%
TCAAGATACCCTGCAGCAAA+TGG + chr1_2:71636596-71636615 Msa0089870:CDS 45.0%
CTTGATGCAATGCAAGCAGT+AGG - chr1_2:71636722-71636741 None:intergenic 45.0%
CTACTGCTTGCATTGCATCA+AGG + chr1_2:71636720-71636739 Msa0089870:intron 45.0%
TCGGATGCAATTGCCCTTAA+TGG + chr1_2:71636810-71636829 Msa0089870:CDS 45.0%
TTAATGGAGCCACCTCATGA+TGG + chr1_2:71636976-71636995 Msa0089870:CDS 45.0%
CTCGGAGCCATAGAATTCAA+TGG - chr1_2:71637181-71637200 None:intergenic 45.0%
CCAAAATACCCATCATGGCT+CGG - chr1_2:71637199-71637218 None:intergenic 45.0%
! TATCGTCCGACAACCACTTT+TGG + chr1_2:71637353-71637372 Msa0089870:CDS 45.0%
! TTGCTGTGAAAGTGTGGATC+AGG - chr1_2:71637516-71637535 None:intergenic 45.0%
GAACTGTTGCTGTGAAAGTG+TGG - chr1_2:71637522-71637541 None:intergenic 45.0%
! TGAACTTGACGGGTGAGAAT+TGG + chr1_2:71637800-71637819 Msa0089870:three_prime_UTR 45.0%
! TTCACTCCATCTAAGGTGGA+TGG - chr1_2:71637842-71637861 None:intergenic 45.0%
AGTCACCGCGATATAGTAGA+TGG + chr1_2:71637932-71637951 Msa0089870:three_prime_UTR 45.0%
TAGTAGATGGAATCTCACCG+TGG + chr1_2:71637945-71637964 Msa0089870:three_prime_UTR 45.0%
CACACCGGAAACAAAGGCAA+AGG + chr1_2:71632993-71633012 Msa0089870:CDS 50.0%
! GCAGCCTTTGCCTTTGTTTC+CGG - chr1_2:71633000-71633019 None:intergenic 50.0%
ACAGGGTCGTGGAACAGAAA+AGG + chr1_2:71633228-71633247 Msa0089870:intron 50.0%
GTTTGCAAGGAGGACGTGTT+AGG + chr1_2:71633354-71633373 Msa0089870:intron 50.0%
! AGAGAGTGCAAAAACGCGTG+TGG + chr1_2:71633488-71633507 Msa0089870:intron 50.0%
TATGAAGTGGATCCGCGAGT+GGG - chr1_2:71633714-71633733 None:intergenic 50.0%
ATATGAAGTGGATCCGCGAG+TGG - chr1_2:71633715-71633734 None:intergenic 50.0%
GCAGGAATCCAATTGTAGCC+GGG - chr1_2:71634335-71634354 None:intergenic 50.0%
! AATGGTGGTAGTGCAGTGAG+TGG + chr1_2:71634371-71634390 Msa0089870:CDS 50.0%
!! AATGAAGAGCATCACACGGG+TGG + chr1_2:71634413-71634432 Msa0089870:CDS 50.0%
ACTGGTTGCTTCCCCTAAGA+GGG + chr1_2:71634439-71634458 Msa0089870:CDS 50.0%
GAAAGCTATGCCCCTCTTAG+GGG - chr1_2:71634453-71634472 None:intergenic 50.0%
ATGCCAAATTCGCGTGCTCT+AGG + chr1_2:71634627-71634646 Msa0089870:CDS 50.0%
GGAGTAACACCTGAGTCTGA+TGG + chr1_2:71634653-71634672 Msa0089870:CDS 50.0%
GTTTGACAGAGGGCAGTATC+TGG + chr1_2:71634973-71634992 Msa0089870:CDS 50.0%
!! GCAGTATCTGGCTTTGGATG+AGG + chr1_2:71634985-71635004 Msa0089870:CDS 50.0%
!! TGGCTTTGGATGAGGGAGAT+GGG + chr1_2:71634993-71635012 Msa0089870:CDS 50.0%
AGGACATGGCTTAGAGCGAT+GGG + chr1_2:71635307-71635326 Msa0089870:CDS 50.0%
!!! ACGTCGGTACCCACTTTTTC+CGG - chr1_2:71635618-71635637 None:intergenic 50.0%
!! AAAGTGGGTACCGACGTACA+TGG + chr1_2:71635621-71635640 Msa0089870:CDS 50.0%
!! AAGTGGGTACCGACGTACAT+GGG + chr1_2:71635622-71635641 Msa0089870:CDS 50.0%
TTCACACTGTCGGAACGTTG+AGG - chr1_2:71635676-71635695 None:intergenic 50.0%
!! GTTGAAGTGTTGGGTGTAGC+TGG + chr1_2:71635901-71635920 Msa0089870:CDS 50.0%
! TCTAGGACAGAGGTTGGAGA+TGG + chr1_2:71635931-71635950 Msa0089870:CDS 50.0%
! TTGGAACGAGTTGAGCTCAG+AGG + chr1_2:71636011-71636030 Msa0089870:CDS 50.0%
CACTTGAACAACCGCAACGT+TGG - chr1_2:71636101-71636120 None:intergenic 50.0%
GGTGCAGAAACTGGCAACAA+TGG + chr1_2:71636354-71636373 Msa0089870:CDS 50.0%
!! TCTTGAGCGTCGACAAGTAC+AGG - chr1_2:71636582-71636601 None:intergenic 50.0%
GTTACGTGAAGCGCATGCTA+TGG - chr1_2:71636758-71636777 None:intergenic 50.0%
GGTACTCAGCAGAATGTGCA+AGG + chr1_2:71636840-71636859 Msa0089870:CDS 50.0%
TCAGCAGAATGTGCAAGGAC+TGG + chr1_2:71636845-71636864 Msa0089870:CDS 50.0%
!!! CCGAGCCATGATGGGTATTT+TGG + chr1_2:71637196-71637215 Msa0089870:CDS 50.0%
!! ATGGGTTGGTTCATGTAGGG+AGG + chr1_2:71637320-71637339 Msa0089870:intron 50.0%
!! TGGGTTGGTTCATGTAGGGA+GGG + chr1_2:71637321-71637340 Msa0089870:intron 50.0%
GTTCATGTAGGGAGGGCAAT+TGG + chr1_2:71637328-71637347 Msa0089870:intron 50.0%
TAGCTTCCTCAGAAGCTGTG+AGG + chr1_2:71637578-71637597 Msa0089870:three_prime_UTR 50.0%
CAATCACCTCACAGCTTCTG+AGG - chr1_2:71637587-71637606 None:intergenic 50.0%
GCAAAGGCTGCAACTGTCAG+TGG + chr1_2:71633009-71633028 Msa0089870:CDS 55.0%
CTGCAACTGTCAGTGGTGCT+TGG + chr1_2:71633016-71633035 Msa0089870:CDS 55.0%
AGGACGCGCTGTTAATGCAG+AGG + chr1_2:71633559-71633578 Msa0089870:intron 55.0%
!!! GCGTTTTTTTCCCCCACTCG+CGG + chr1_2:71633699-71633718 Msa0089870:intron 55.0%
ATGAAGTGGATCCGCGAGTG+GGG - chr1_2:71633713-71633732 None:intergenic 55.0%
CAAACATGGGCAGCCCAATC+AGG - chr1_2:71634090-71634109 None:intergenic 55.0%
CTGATTGGGCTGCCCATGTT+TGG + chr1_2:71634088-71634107 Msa0089870:intron 55.0%
ATCCAATTGTAGCCGGGCTG+CGG - chr1_2:71634329-71634348 None:intergenic 55.0%
! CACTGGTTGCTTCCCCTAAG+AGG + chr1_2:71634438-71634457 Msa0089870:CDS 55.0%
CTGGTTGCTTCCCCTAAGAG+GGG + chr1_2:71634440-71634459 Msa0089870:CDS 55.0%
CTGCTCCTACCATCAGACTC+AGG - chr1_2:71634665-71634684 None:intergenic 55.0%
! CAGAGGGCAGTATCTGGCTT+TGG + chr1_2:71634979-71634998 Msa0089870:CDS 55.0%
!! CTGGCTTTGGATGAGGGAGA+TGG + chr1_2:71634992-71635011 Msa0089870:CDS 55.0%
GGGAGATGGGCAAGTTATGC+TGG + chr1_2:71635006-71635025 Msa0089870:CDS 55.0%
GAGGACATGGCTTAGAGCGA+TGG + chr1_2:71635306-71635325 Msa0089870:CDS 55.0%
ACATGGCTTAGAGCGATGGG+AGG + chr1_2:71635310-71635329 Msa0089870:CDS 55.0%
CATGGCTTAGAGCGATGGGA+GGG + chr1_2:71635311-71635330 Msa0089870:CDS 55.0%
ACTGTCGGAACGTTGAGGTG+TGG - chr1_2:71635671-71635690 None:intergenic 55.0%
TCAACACAGCATGCAAGGCC+TGG + chr1_2:71637011-71637030 Msa0089870:CDS 55.0%
TCTATGGCTCCGAGCCATGA+TGG + chr1_2:71637187-71637206 Msa0089870:CDS 55.0%
CTATGGCTCCGAGCCATGAT+GGG + chr1_2:71637188-71637207 Msa0089870:CDS 55.0%
TGAAGTGGATCCGCGAGTGG+GGG - chr1_2:71633712-71633731 None:intergenic 60.0%
TACAGTAAGTGGCCGCAGCC+CGG + chr1_2:71634314-71634333 Msa0089870:CDS 60.0%
GCATCACACGGGTGGTGCAC+TGG + chr1_2:71634421-71634440 Msa0089870:CDS 65.0%
GGCCGCAGCCCGGCTACAAT+TGG + chr1_2:71634324-71634343 Msa0089870:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 71632757 71638028 71632757 ID=Msa0089870;Name=Msa0089870
chr1_2 mRNA 71632757 71638028 71632757 ID=Msa0089870-mRNA-1;Parent=Msa0089870;Name=Msa0089870-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.75|0.66|0.77|1|1|9|474|908
chr1_2 exon 71632757 71632792 71632757 ID=Msa0089870-mRNA-1:exon:24698;Parent=Msa0089870-mRNA-1
chr1_2 exon 71632976 71633108 71632976 ID=Msa0089870-mRNA-1:exon:24699;Parent=Msa0089870-mRNA-1
chr1_2 exon 71634270 71636461 71634270 ID=Msa0089870-mRNA-1:exon:24700;Parent=Msa0089870-mRNA-1
chr1_2 exon 71636561 71636617 71636561 ID=Msa0089870-mRNA-1:exon:24701;Parent=Msa0089870-mRNA-1
chr1_2 exon 71636798 71636866 71636798 ID=Msa0089870-mRNA-1:exon:24702;Parent=Msa0089870-mRNA-1
chr1_2 exon 71636961 71637032 71636961 ID=Msa0089870-mRNA-1:exon:24703;Parent=Msa0089870-mRNA-1
chr1_2 exon 71637175 71637243 71637175 ID=Msa0089870-mRNA-1:exon:24704;Parent=Msa0089870-mRNA-1
chr1_2 exon 71637338 71637388 71637338 ID=Msa0089870-mRNA-1:exon:24705;Parent=Msa0089870-mRNA-1
chr1_2 exon 71637507 71638028 71637507 ID=Msa0089870-mRNA-1:exon:24706;Parent=Msa0089870-mRNA-1
chr1_2 CDS 71632757 71632792 71632757 ID=Msa0089870-mRNA-1:cds;Parent=Msa0089870-mRNA-1
chr1_2 CDS 71632976 71633108 71632976 ID=Msa0089870-mRNA-1:cds;Parent=Msa0089870-mRNA-1
chr1_2 CDS 71634270 71636461 71634270 ID=Msa0089870-mRNA-1:cds;Parent=Msa0089870-mRNA-1
chr1_2 CDS 71636561 71636617 71636561 ID=Msa0089870-mRNA-1:cds;Parent=Msa0089870-mRNA-1
chr1_2 CDS 71636798 71636866 71636798 ID=Msa0089870-mRNA-1:cds;Parent=Msa0089870-mRNA-1
chr1_2 CDS 71636961 71637032 71636961 ID=Msa0089870-mRNA-1:cds;Parent=Msa0089870-mRNA-1
chr1_2 CDS 71637175 71637243 71637175 ID=Msa0089870-mRNA-1:cds;Parent=Msa0089870-mRNA-1
chr1_2 CDS 71637338 71637388 71637338 ID=Msa0089870-mRNA-1:cds;Parent=Msa0089870-mRNA-1
chr1_2 CDS 71637507 71637554 71637507 ID=Msa0089870-mRNA-1:cds;Parent=Msa0089870-mRNA-1
chr1_2 three_prime_UTR 71637555 71638028 71637555 ID=Msa0089870-mRNA-1:three_prime_utr;Parent=Msa0089870-mRNA-1
Gene Sequence

>Msa0089870

ATGGATAAGAAGCAGCAAGATGAAGGAAAAAACACAGAGGTATCATGTTCAAGCACACCGGAAACAAAGGCAAAGGCTGCAACTGTCAGTGGTGCTTGGTTTCTTTTACGATTCTCTATGGAAATGGGTTCCATGGATGGGAGAAAATGTTTCGGTATCATGGCAGGAAAGTTTGATGGTTTCGCTAATTGGAAACTTTGTTTTGGTGCATTTTACAGTAAGTGGCCGCAGCCCGGCTACAATTGGATTCCTGCTAGTTCATCAAAATGGAATGGTGGTAGTGCAGTGAGTGGAAGTATGGGTGACTCTGTCAATGAAGAGCATCACACGGGTGGTGCACTGGTTGCTTCCCCTAAGAGGGGCATAGCTTTCTTTGAAGGGGACACGGATTTTGAGCCACCTAACGGCATTGAATTTGAAACTCATGAAGCAGCATATTCATTTTATCAAGAGTATGCCAAATCTATGGGATTCACCACTTCCATTAAAAACAGCAGACGATCAAAGAAGACCAAAGAATTTATTGATGCCAAATTCGCGTGCTCTAGGTATGGAGTAACACCTGAGTCTGATGGTAGGAGCAGTCGAAGATCGAGTGTAAAGAAGACAGATTGCAAAGCTTGCATGCACGTGAAGAAAAACCCAGATGGGAAATGGAACATTTTTGAATTTATAAAGGATCATAATCATGAACTTTTACCAGCTTTGGCATATCATTTTCGGATTCATGGAAACGTGAAGTTAGCTGACAAGAATAATATTGATATCTTGCATGCTGTTAGTGAACGTACCCGAAAGATGTATGTTGAAATGTCTAGACAATCTGGTGGCTGTCAAAACATTGGGTCAATCATGGGTGATACGAGTTATCAGTTTGACAGAGGGCAGTATCTGGCTTTGGATGAGGGAGATGGGCAAGTTATGCTGGAGTATTTCAAGCATATTCAAAAGGAGGATCCCAACTTCTTCTATTCTATAGATTTAAACGAGGAACAACGTTTAAGAAATATATTTTGGGTTGATTCAAAAAGCATCGATGATTACCTCAGCTTTAATGATGCAGTTTCATTTGATACTTCCTACATAAAAAGCAACGATAAGTTGCCTTTTGCTCCTTTTGTTGGAGTGAACCATCACTCCCAACCTATATTGCTTGGATGTGCATTGGTTGCTGATGAGACTAAGCCCACTTTTGTTTGGTTACTGAGGACATGGCTTAGAGCGATGGGAGGGCAAGCTCCCAAAGTTATAGTCACTGATCAAGACAAAGCCTTGAAGGAAGCAATTGAAGAAGTCTTCCCAAGTGTACGTCATTGCTTTTCTCTTTGTCACATATTGGAAAAGATACCTGAAAATCTGTCTTTTGTGATAAAACAGTACAAGAACTTCTTGCCAAAGTTTAAGAATTGCATTTTTAAGTCCTGGACAGATGAACAGTTTGACATGAGATGGTGGGAAATAGTGACTATATTTGAACTCCATGGTGATGTTTGGTTTCACTCATTGTACGAAGACCGGAAAAAGTGGGTACCGACGTACATGGGAGATGTCTTTTTAGCTGGAATGTCCACACCTCAACGTTCCGACAGTGTGAACTCTTTCTTTGACAAATACATTCATAAGAAAATCACCCTTAAAGAGTTTGTGAAACAGTATAGGTTAATTCTTCTGAATAGGTATGATGAGGAAGAAATCGCAGATTTTGATACATTGCACAAACAACCTGCACTTAAATCTCCTTCACCTTGGGAAAAACAAATGTCAACAATTTATACACATGCAATATTTAAGAAATTCCAAGTTGAAGTGTTGGGTGTAGCTGGATGTCAATCTAGGACAGAGGTTGGAGATGGAACTGTTGTGAGATATATAGTTCAAGATTACGAGAAGGATGAAGAGTTTTTGGTAACTTGGAACGAGTTGAGCTCAGAGGTCTCTTGCTTCTGTCGATTGTTCGAATATAAAGGTTTCCTTTGCAGACATGCATTGAGTGTTCTCCAACGTTGCGGTTGTTCAAGTGTTCCATCTCATTATATCATGAAGAGATGGACCAAAGATGCCAAAATTAGGGAACCTGTAGCAGATAGGACACAAAGGATACAAACTAGGCCTCAACGTTATAATGATGTGTGCAAACGAAGTATTGCGTTGAGTGAAGAAGGATCATCATCCGAAGAGAGTTATAATGTTGCTTTGCGCGCGCTTGTTGATGCTTTGAAGAACTGTGTACTTGTAAATAACTCTAACGACAATGGTGCAGAAACTGGCAACAATGGTTACAGTCTTCGCGAAGCAGAAGAATATCAGAGTACCCTTGCTTCAAAACCAAGTAAGAAGAGGAACACAACTAGGAAAAGAAAGGTGCAACAAGAGCAGAGTCCTGTACTTGTCGACGCTCAAGATACCCTGCAGCAAATGGATAATCTTAGCTCGGATGCAATTGCCCTTAATGGATATTATGGTACTCAGCAGAATGTGCAAGGACTGCATGTACAGTTGAACTTAATGGAGCCACCTCATGATGGTTACTATGTTAATCAACACAGCATGCAAGGCCTGGGTCCATTGAATTCTATGGCTCCGAGCCATGATGGGTATTTTGGAACACAACAAAGCATTCATGGGATGGGAGGGCAATTGGAGTATCGTCCGACAACCACTTTTGGATATAGCCTTCAGGATGAGCCTGATCCACACTTTCACAGCAACAGTTCAAGAAATACTTAG
Protein sequence

>Msa0089870

MDKKQQDEGKNTEVSCSSTPETKAKAATVSGAWFLLRFSMEMGSMDGRKCFGIMAGKFDGFANWKLCFGAFYSKWPQPGYNWIPASSSKWNGGSAVSGSMGDSVNEEHHTGGALVASPKRGIAFFEGDTDFEPPNGIEFETHEAAYSFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDGRSSRRSSVKKTDCKACMHVKKNPDGKWNIFEFIKDHNHELLPALAYHFRIHGNVKLADKNNIDILHAVSERTRKMYVEMSRQSGGCQNIGSIMGDTSYQFDRGQYLALDEGDGQVMLEYFKHIQKEDPNFFYSIDLNEEQRLRNIFWVDSKSIDDYLSFNDAVSFDTSYIKSNDKLPFAPFVGVNHHSQPILLGCALVADETKPTFVWLLRTWLRAMGGQAPKVIVTDQDKALKEAIEEVFPSVRHCFSLCHILEKIPENLSFVIKQYKNFLPKFKNCIFKSWTDEQFDMRWWEIVTIFELHGDVWFHSLYEDRKKWVPTYMGDVFLAGMSTPQRSDSVNSFFDKYIHKKITLKEFVKQYRLILLNRYDEEEIADFDTLHKQPALKSPSPWEKQMSTIYTHAIFKKFQVEVLGVAGCQSRTEVGDGTVVRYIVQDYEKDEEFLVTWNELSSEVSCFCRLFEYKGFLCRHALSVLQRCGCSSVPSHYIMKRWTKDAKIREPVADRTQRIQTRPQRYNDVCKRSIALSEEGSSSEESYNVALRALVDALKNCVLVNNSNDNGAETGNNGYSLREAEEYQSTLASKPSKKRNTTRKRKVQQEQSPVLVDAQDTLQQMDNLSSDAIALNGYYGTQQNVQGLHVQLNLMEPPHDGYYVNQHSMQGLGPLNSMAPSHDGYFGTQQSIHGMGGQLEYRPTTTFGYSLQDEPDPHFHSNSSRNT*