AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0136260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0136260 MtrunA17_Chr1g0207551 97.411 811 19 1 100 908 1 811 0.0 1668
Msa0136260 MtrunA17_Chr3g0080351 49.465 841 376 9 89 908 32 844 0.0 797
Msa0136260 MtrunA17_Chr2g0329031 49.280 694 327 8 127 810 8 686 0.0 676
Msa0136260 MtrunA17_Chr5g0448761 36.349 641 391 8 121 745 48 687 4.11e-142 441
Msa0136260 MtrunA17_Chr1g0202341 34.123 633 402 6 131 751 49 678 3.15e-123 389
Msa0136260 MtrunA17_Chr2g0291581 34.395 628 384 11 126 739 63 676 7.20e-120 380
Msa0136260 MtrunA17_Chr5g0441581 34.548 631 386 7 131 752 30 642 6.73e-118 375
Msa0136260 MtrunA17_Chr2g0296781 35.346 563 350 6 137 690 1 558 8.86e-114 365
Msa0136260 MtrunA17_Chr5g0440451 32.669 652 387 14 132 749 42 675 1.79e-112 367
Msa0136260 MtrunA17_Chr6g0477261 39.858 424 247 3 274 690 25 447 3.92e-104 337
Msa0136260 MtrunA17_Chr1g0196541 33.919 569 350 8 137 690 1 558 4.77e-103 337
Msa0136260 MtrunA17_Chr3g0118611 37.194 449 276 3 304 748 118 564 1.84e-100 331
Msa0136260 MtrunA17_Chr2g0291591 34.195 503 325 4 132 632 63 561 4.06e-97 316
Msa0136260 MtrunA17_Chr5g0448511 33.784 444 288 2 303 740 11 454 1.18e-93 306
Msa0136260 MtrunA17_Chr2g0287061 34.568 567 328 9 125 688 175 701 2.06e-93 312
Msa0136260 MtrunA17_Chr3g0082121 31.331 616 394 13 126 728 36 635 3.61e-91 304
Msa0136260 MtrunA17_Chr8g0363841 30.948 559 369 7 141 688 25 577 8.64e-89 296
Msa0136260 MtrunA17_Chr1g0203721 28.031 635 443 6 136 757 66 699 6.66e-83 285
Msa0136260 MtrunA17_Chr2g0287651 30.071 562 375 9 137 688 79 632 1.30e-81 282
Msa0136260 MtrunA17_Chr2g0324011 27.592 569 401 6 128 689 5 569 4.30e-81 273
Msa0136260 MtrunA17_Chr6g0458391 29.401 568 378 5 126 689 218 766 2.76e-80 276
Msa0136260 MtrunA17_Chr2g0276841 30.756 569 366 13 133 685 70 626 6.89e-73 254
Msa0136260 MtrunA17_Chr1g0203051 28.924 567 365 16 128 675 74 621 4.58e-68 239
Msa0136260 MtrunA17_Chr1g0198761 29.340 576 373 14 136 689 50 613 2.74e-67 239
Msa0136260 MtrunA17_Chr2g0294841 27.018 607 421 11 92 683 4 603 3.73e-60 219
Msa0136260 MtrunA17_Chr2g0290391 26.917 587 376 16 133 689 51 614 2.84e-58 212
Msa0136260 MtrunA17_Chr1g0164591 29.870 308 206 4 217 523 10 308 6.81e-47 171
Msa0136260 MtrunA17_Chr5g0431001 28.221 489 311 13 73 539 10 480 1.21e-46 174
Msa0136260 MtrunA17_Chr7g0258861 27.431 288 200 5 128 408 5 290 1.26e-32 129
Msa0136260 MtrunA17_Chr2g0308841 25.267 281 168 5 464 729 1 254 1.81e-18 86.3
Msa0136260 MtrunA17_Chr7g0233911 38.053 113 66 2 132 241 33 144 2.93e-16 79.0
Msa0136260 MtrunA17_Chr3g0078041 37.383 107 60 2 132 233 49 153 4.30e-16 78.6
Msa0136260 MtrunA17_Chr4g0033611 29.630 135 91 2 102 235 48 179 4.27e-14 73.6
Msa0136260 MtrunA17_Chr2g0329361 31.250 112 72 2 127 233 54 165 1.01e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0136260 AT4G15090.1 66.710 778 252 4 121 895 39 812 0.0 1089
Msa0136260 AT4G15090.5 66.710 778 252 4 121 895 39 812 0.0 1089
Msa0136260 AT4G15090.3 66.710 778 252 4 121 895 39 812 0.0 1089
Msa0136260 AT4G15090.2 66.710 778 252 4 121 895 39 812 0.0 1089
Msa0136260 AT4G15090.4 66.710 778 252 4 121 895 39 812 0.0 1089
Msa0136260 AT3G22170.2 49.566 807 360 9 122 908 60 839 0.0 799
Msa0136260 AT3G22170.1 49.566 807 360 9 122 908 60 839 0.0 799
Msa0136260 AT1G76320.1 46.322 639 331 4 137 771 1 631 0.0 622
Msa0136260 AT1G76320.4 46.322 639 331 4 137 771 1 631 0.0 622
Msa0136260 AT1G76320.2 46.322 639 331 4 137 771 1 631 0.0 622
Msa0136260 AT1G76320.3 46.322 639 331 4 137 771 1 631 0.0 620
Msa0136260 AT4G19990.6 43.669 774 341 13 130 879 18 720 0.0 548
Msa0136260 AT4G19990.3 43.669 774 341 13 130 879 18 720 0.0 548
Msa0136260 AT4G19990.2 43.669 774 341 13 130 879 18 720 0.0 548
Msa0136260 AT4G19990.4 43.669 774 341 13 130 879 18 720 0.0 548
Msa0136260 AT4G19990.7 43.669 774 341 13 130 879 32 734 0.0 548
Msa0136260 AT4G19990.5 43.669 774 341 13 130 879 18 720 0.0 548
Msa0136260 AT2G32250.2 39.130 782 406 10 132 889 37 772 1.01e-175 530
Msa0136260 AT2G32250.4 39.130 782 406 10 132 889 37 772 1.01e-175 530
Msa0136260 AT2G32250.6 39.080 783 407 10 132 889 37 774 2.55e-175 528
Msa0136260 AT2G32250.1 39.080 783 407 10 132 889 37 774 2.55e-175 528
Msa0136260 AT2G32250.3 39.080 783 407 10 132 889 37 774 2.55e-175 528
Msa0136260 AT2G32250.5 39.323 768 397 9 132 875 37 759 5.05e-175 526
Msa0136260 AT2G32250.8 38.996 777 404 10 137 889 1 731 3.26e-174 524
Msa0136260 AT2G32250.7 38.946 778 405 10 137 889 1 733 8.72e-174 523
Msa0136260 AT4G19990.1 42.974 733 323 13 171 879 2 663 4.41e-167 503
Msa0136260 AT4G38180.1 37.619 630 380 5 130 747 70 698 1.12e-144 448
Msa0136260 AT2G27110.2 34.032 620 374 9 132 745 48 638 1.12e-116 377
Msa0136260 AT2G27110.1 34.032 620 374 9 132 745 48 638 1.12e-116 377
Msa0136260 AT1G52520.1 34.796 638 377 14 133 750 85 703 2.42e-112 361
Msa0136260 AT2G27110.3 37.190 484 285 6 267 745 24 493 5.96e-106 344
Msa0136260 AT1G80010.1 32.432 629 396 14 133 742 95 713 3.52e-105 342
Msa0136260 AT3G06250.2 34.107 560 324 8 132 689 189 705 5.89e-98 324
Msa0136260 AT3G06250.2 33.929 112 63 1 121 232 16 116 6.79e-11 66.6
Msa0136260 AT3G06250.1 34.107 560 324 8 132 689 189 705 5.89e-98 324
Msa0136260 AT3G06250.1 33.929 112 63 1 121 232 16 116 6.79e-11 66.6
Msa0136260 AT3G06250.3 34.107 560 324 8 132 689 189 705 5.89e-98 324
Msa0136260 AT3G06250.3 33.929 112 63 1 121 232 16 116 6.79e-11 66.6
Msa0136260 AT5G18960.2 33.157 567 329 9 129 689 207 729 1.74e-93 313
Msa0136260 AT5G18960.1 33.157 567 329 9 129 689 207 729 1.74e-93 313
Msa0136260 AT4G38170.1 32.700 474 292 6 308 767 21 481 3.92e-85 283
Msa0136260 AT1G10240.2 29.322 590 384 13 133 701 48 625 5.08e-71 248
Msa0136260 AT1G10240.1 29.322 590 384 13 133 701 48 625 5.08e-71 248
Msa0136260 AT5G28530.3 27.721 588 376 16 128 687 50 616 3.17e-56 206
Msa0136260 AT5G28530.2 27.721 588 376 16 128 687 50 616 3.17e-56 206
Msa0136260 AT5G28530.1 27.211 588 383 15 128 687 50 620 5.32e-56 206
Msa0136260 AT5G28530.5 26.343 577 335 21 128 687 50 553 1.30e-39 156
Msa0136260 AT5G28530.4 25.823 577 342 20 128 687 50 557 1.49e-39 156
Msa0136260 AT2G43280.1 36.975 119 66 3 128 239 17 133 1.40e-15 77.0
Msa0136260 AT4G12850.4 39.604 101 60 1 132 232 10 109 6.28e-15 73.2
Msa0136260 AT4G12850.2 39.604 101 60 1 132 232 10 109 8.09e-15 72.8
Msa0136260 AT3G59470.3 34.286 105 68 1 132 235 69 173 4.01e-14 73.9
Msa0136260 AT3G59470.1 34.286 105 68 1 132 235 69 173 4.01e-14 73.9
Msa0136260 AT3G59470.2 34.286 105 68 1 132 235 81 185 4.02e-14 73.9
Msa0136260 AT4G12850.1 39.604 101 60 1 132 232 10 109 4.35e-14 72.0
Msa0136260 AT3G07500.1 30.323 155 98 2 126 278 26 172 7.03e-14 72.4
Msa0136260 AT2G43280.2 35.354 99 55 3 148 239 2 98 6.97e-11 62.4

Find 215 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTACAGGTTCCCTAATTT+TGG 0.141551 1_3:+68089976 None:intergenic
CCGAGCCATGATGGGTATTT+TGG 0.151356 1_3:-68088940 Msa0136260:CDS
ACTGTTTCACAAACTCTTTA+AGG 0.204134 1_3:+68090404 None:intergenic
AACGTTTAAGAAATATATTT+TGG 0.206444 1_3:-68091041 Msa0136260:CDS
GCAGCCTTTGCCTTTGTTTC+CGG 0.213358 1_3:+68093139 None:intergenic
TCGGATGCAATTGCCCTTAA+TGG 0.236596 1_3:-68089326 Msa0136260:CDS
ATTGCCCTTAATGGATATTA+TGG 0.237741 1_3:-68089317 Msa0136260:CDS
AGTTTGATGGTTTCGCTAAT+TGG 0.252792 1_3:-68091866 Msa0136260:CDS
GGACCAAAGATGCCAAAATT+AGG 0.253094 1_3:-68089988 Msa0136260:CDS
TTTGGCATCAATAAATTCTT+TGG 0.254194 1_3:+68091524 None:intergenic
CATTTCAACATACATCTTTC+GGG 0.258771 1_3:+68091245 None:intergenic
TGTCGATTGTTCGAATATAA+AGG 0.270665 1_3:-68090091 Msa0136260:CDS
GAGTACCATAATATCCATTA+AGG 0.276199 1_3:+68089312 None:intergenic
TCAAGAGTATGCCAAATCTA+TGG 0.278613 1_3:-68091589 Msa0136260:CDS
ATACCTAGAGCACGCGAATT+TGG 0.279686 1_3:+68091506 None:intergenic
ACATTTCAACATACATCTTT+CGG 0.295052 1_3:+68091244 None:intergenic
AAGAAAGCTATGCCCCTCTT+AGG 0.295788 1_3:+68091684 None:intergenic
CTGTTTCACAAACTCTTTAA+GGG 0.296391 1_3:+68090405 None:intergenic
TTTACGATTCTCTATGGAAA+TGG 0.303715 1_3:-68093092 Msa0136260:CDS
ATATTCAGAAGAAATGAAAT+TGG 0.307598 1_3:+68088235 None:intergenic
TTCCTGCTAGTTCATCAAAA+TGG 0.314122 1_3:-68091788 Msa0136260:CDS
TTGATCAGTGACTATAACTT+TGG 0.317440 1_3:+68090795 None:intergenic
GCATGTACAGTTGAACTTAA+TGG 0.318417 1_3:-68089176 Msa0136260:CDS
AATTTGTCTCTTCTTTGATA+TGG 0.325090 1_3:-68088581 Msa0136260:three_prime_UTR
TATCGTCCGACAACCACTTT+TGG 0.332110 1_3:-68088783 Msa0136260:CDS
AAAATGCAATTCTTAAACTT+TGG 0.338533 1_3:+68090643 None:intergenic
TAGTGCAGTGAGTGGAAGTA+TGG 0.343019 1_3:-68091757 Msa0136260:CDS
GAAATTGCCCATTGAAATCT+AGG 0.344447 1_3:-68088388 Msa0136260:three_prime_UTR
AAAATGTTCCATTTCCCATC+TGG 0.352283 1_3:+68091393 None:intergenic
GCTAATTGGAAACTTTGTTT+TGG 0.353265 1_3:-68091852 Msa0136260:CDS
TTCTTCAATTGCTTCCTTCA+AGG 0.360322 1_3:+68090765 None:intergenic
GTAGGGTCCATTGAATTCTA+TGG 0.362242 1_3:-68088965 Msa0136260:intron
AACGACAATGGTGCAGAAAC+TGG 0.362647 1_3:-68089791 Msa0136260:CDS
GTTTGACAGAGGGCAGTATC+TGG 0.368111 1_3:-68091163 Msa0136260:CDS
GGCCGCAGCCCGGCTACAAT+TGG 0.381550 1_3:-68091812 Msa0136260:CDS
ATAGGTTAATTCTTCTGAAT+AGG 0.384277 1_3:-68090381 Msa0136260:CDS
GTTGTGTTCCTCTTCTTACT+TGG 0.388273 1_3:+68089710 None:intergenic
AAAAGAGAATTGAAAGAACT+TGG 0.390296 1_3:-68088529 Msa0136260:three_prime_UTR
GGAACACAACAAAGCATTCA+TGG 0.390771 1_3:-68088919 Msa0136260:CDS
AAACATCCATCCACCTTAGA+TGG 0.394409 1_3:-68088303 Msa0136260:three_prime_UTR
TGAACTTGACGGGTGAGAAT+TGG 0.396608 1_3:-68088336 Msa0136260:three_prime_UTR
TGATCAAGACAAAGCCTTGA+AGG 0.399103 1_3:-68090779 Msa0136260:CDS
AGAAAGCTATGCCCCTCTTA+GGG 0.402896 1_3:+68091685 None:intergenic
ATCTATAGAATAGAAGAAGT+TGG 0.403398 1_3:+68091077 None:intergenic
CTTTGTGTCCTATCTGCTAC+AGG 0.407215 1_3:+68089962 None:intergenic
AAGAGTTTGTGAAACAGTAT+AGG 0.409635 1_3:-68090399 Msa0136260:CDS
AGTGGTGAATCCCATAGATT+TGG 0.415385 1_3:+68091578 None:intergenic
CAGAGGGCAGTATCTGGCTT+TGG 0.416018 1_3:-68091157 Msa0136260:CDS
CACTGGTTGCTTCCCCTAAG+AGG 0.417880 1_3:-68091698 Msa0136260:CDS
TATGTTCCATCTATTATGTC+TGG 0.422350 1_3:-68088161 Msa0136260:three_prime_UTR
ATCTTGCTGCTTCTTATCCA+TGG 0.424251 1_3:+68093381 None:intergenic
AATGCACATCCAAGCAATAT+AGG 0.426423 1_3:+68090892 None:intergenic
GACCAAAGATGCCAAAATTA+GGG 0.426826 1_3:-68089987 Msa0136260:CDS
TTACGATTCTCTATGGAAAT+GGG 0.429895 1_3:-68093091 Msa0136260:CDS
AGTCACCGCGATATAGTAGA+TGG 0.432401 1_3:-68088204 Msa0136260:three_prime_UTR
GTAATTTACCTAGATTTCAA+TGG 0.434851 1_3:+68088380 None:intergenic
TGATCAGTGACTATAACTTT+GGG 0.440778 1_3:+68090796 None:intergenic
AAATGTTCCATTTCCCATCT+GGG 0.441346 1_3:+68091394 None:intergenic
TTGAACTCCATGGTGATGTT+TGG 0.443678 1_3:-68090564 Msa0136260:CDS
TTGCTGTGAAAGTGTGGATC+AGG 0.445132 1_3:+68088623 None:intergenic
TCAAAACATTGGGTCAATCA+TGG 0.447302 1_3:-68091202 Msa0136260:CDS
GTGATACCAGACATAATAGA+TGG 0.447657 1_3:+68088155 None:intergenic
TAATTTACCTAGATTTCAAT+GGG 0.448920 1_3:+68088381 None:intergenic
GTTGAAGTGTTGGGTGTAGC+TGG 0.449517 1_3:-68090235 Msa0136260:CDS
GTTCATGTAGGGAGGGCAAT+TGG 0.449744 1_3:-68088808 Msa0136260:intron
TCTATAGAATAGAAGAAGTT+GGG 0.462776 1_3:+68091078 None:intergenic
CTGCAACTGTCAGTGGTGCT+TGG 0.462967 1_3:-68093120 Msa0136260:CDS
CACTCCCAACCTATATTGCT+TGG 0.465721 1_3:-68090901 Msa0136260:CDS
GGGAGATGGGCAAGTTATGC+TGG 0.466240 1_3:-68091130 Msa0136260:CDS
GCAGTATCTGGCTTTGGATG+AGG 0.466634 1_3:-68091151 Msa0136260:CDS
TCAAGATACCCTGCAGCAAA+TGG 0.469548 1_3:-68089540 Msa0136260:intron
ACTTAAATCTCCTTCACCTT+GGG 0.470138 1_3:-68090308 Msa0136260:CDS
GAGAAAATGTTTCGGTATCA+TGG 0.471252 1_3:-68093056 Msa0136260:CDS
GTTGAAATGTCTAGACAATC+TGG 0.471543 1_3:-68091231 Msa0136260:CDS
GAAATTCCAAGTTGAAGTGT+TGG 0.475026 1_3:-68090245 Msa0136260:CDS
AGCAACATTATAACTCTCTT+CGG 0.478706 1_3:+68089865 None:intergenic
ATGCCAAATTCGCGTGCTCT+AGG 0.479668 1_3:-68091509 Msa0136260:CDS
AGGGGCATAGCTTTCTTTGA+AGG 0.480618 1_3:-68091678 Msa0136260:CDS
GCAATATAGGTTGGGAGTGA+TGG 0.483077 1_3:+68090905 None:intergenic
ACTGGTTGCTTCCCCTAAGA+GGG 0.487153 1_3:-68091697 Msa0136260:CDS
AAATTCCAAGTTGAAGTGTT+GGG 0.488182 1_3:-68090244 Msa0136260:CDS
CTGGTGGCTGTCAAAACATT+GGG 0.488703 1_3:-68091212 Msa0136260:CDS
GTATTTCAAGCATATTCAAA+AGG 0.489011 1_3:-68091106 Msa0136260:CDS
GTCAAACTGTTCATCTGTCC+AGG 0.491245 1_3:+68090615 None:intergenic
GTGTAGCTGGATGTCAATCT+AGG 0.493252 1_3:-68090222 Msa0136260:CDS
TTCACTCATTGTACGAAGAC+CGG 0.494147 1_3:-68090540 Msa0136260:CDS
CTGGCTTTGGATGAGGGAGA+TGG 0.494760 1_3:-68091144 Msa0136260:CDS
ACTCCAACAAAAGGAGCAAA+AGG 0.494816 1_3:+68090931 None:intergenic
ATCCAATTGTAGCCGGGCTG+CGG 0.496113 1_3:+68091810 None:intergenic
AAATGTTTCGGTATCATGGC+AGG 0.497190 1_3:-68093052 Msa0136260:CDS
ATCTATTATGTCTGGTATCA+CGG 0.498288 1_3:-68088153 Msa0136260:three_prime_UTR
CTCTATGGAAATGGGTTCCA+TGG 0.498375 1_3:-68093083 Msa0136260:CDS
CACATCCAAGCAATATAGGT+TGG 0.500060 1_3:+68090896 None:intergenic
ATGGAAATGGGTTCCATGGA+TGG 0.500788 1_3:-68093079 Msa0136260:CDS
GTTTCAAATTCAATGCCGTT+AGG 0.501314 1_3:+68091636 None:intergenic
AGCAGGAATCCAATTGTAGC+CGG 0.501519 1_3:+68091803 None:intergenic
CACTTAAATCTCCTTCACCT+TGG 0.501635 1_3:-68090309 Msa0136260:CDS
GATAAGAAGCAGCAAGATGA+AGG 0.501882 1_3:-68093376 Msa0136260:CDS
AAAATTCAAAATGAACTTGA+CGG 0.502637 1_3:-68088347 Msa0136260:three_prime_UTR
CGAAAATGATATGCCAAAGC+TGG 0.503037 1_3:+68091336 None:intergenic
AGTACCATAATATCCATTAA+GGG 0.503128 1_3:+68089313 None:intergenic
TGATGGTTCACTCCAACAAA+AGG 0.509844 1_3:+68090922 None:intergenic
ATGGATGGGAGAAAATGTTT+CGG 0.509882 1_3:-68093064 Msa0136260:CDS
GTTACATGAGGTAAACTTCA+AGG 0.510286 1_3:+68088430 None:intergenic
AGTATTGCGTTGAGTGAAGA+AGG 0.512046 1_3:-68089896 Msa0136260:CDS
GGTGAAGGAGATTTAAGTGC+AGG 0.515427 1_3:+68090313 None:intergenic
GCATCACACGGGTGGTGCAC+TGG 0.518829 1_3:-68091715 Msa0136260:CDS
CAATCACCTCACAGCTTCTG+AGG 0.522696 1_3:+68088552 None:intergenic
CAGTATCTGGCTTTGGATGA+GGG 0.524524 1_3:-68091150 Msa0136260:CDS
CAAGAGTATGCCAAATCTAT+GGG 0.524696 1_3:-68091588 Msa0136260:CDS
TACAGTAAGTGGCCGCAGCC+CGG 0.528136 1_3:-68091822 Msa0136260:CDS
ACATCCAAGCAATATAGGTT+GGG 0.528400 1_3:+68090897 None:intergenic
CAAAACATTGGGTCAATCAT+GGG 0.529150 1_3:-68091201 Msa0136260:CDS
TCTATGGCTCCGAGCCATGA+TGG 0.529480 1_3:-68088949 Msa0136260:CDS
GGGGCATAGCTTTCTTTGAA+GGG 0.530599 1_3:-68091677 Msa0136260:CDS
TTGTTTGGTTACTGAGGACA+TGG 0.530723 1_3:-68090843 Msa0136260:CDS
TCTTGAGCGTCGACAAGTAC+AGG 0.531111 1_3:+68089557 None:intergenic
TCAACACAGCATGCAAGGCC+TGG 0.531717 1_3:-68089125 Msa0136260:intron
CACTTGAACAACCGCAACGT+TGG 0.534327 1_3:+68090038 None:intergenic
TGGCTTTGGATGAGGGAGAT+GGG 0.535356 1_3:-68091143 Msa0136260:CDS
AAATTCAAAATGAACTTGAC+GGG 0.536740 1_3:-68088346 Msa0136260:three_prime_UTR
AGCTTTCTTTGAAGGGGACA+CGG 0.537323 1_3:-68091670 Msa0136260:CDS
AAACACAAACCATTTGCTGC+AGG 0.538027 1_3:+68089531 None:intergenic
GAGGACATGGCTTAGAGCGA+TGG 0.543287 1_3:-68090830 Msa0136260:CDS
GAAAAGCAATGACGTACACT+TGG 0.544275 1_3:+68090736 None:intergenic
CTATGGCTCCGAGCCATGAT+GGG 0.544403 1_3:-68088948 Msa0136260:CDS
CTGAAGGCTATATCCAAAAG+TGG 0.546535 1_3:+68088770 None:intergenic
CTACACCCAACACTTCAACT+TGG 0.546709 1_3:+68090239 None:intergenic
TTAGGGAACCTGTAGCAGAT+AGG 0.546715 1_3:-68089970 Msa0136260:CDS
CTCGGAGCCATAGAATTCAA+TGG 0.548526 1_3:+68088958 None:intergenic
TATATTGCTTGGATGTGCAT+TGG 0.548998 1_3:-68090890 Msa0136260:CDS
TCTGGTGGCTGTCAAAACAT+TGG 0.549465 1_3:-68091213 Msa0136260:CDS
CTCATTATATCATGAAGAGA+TGG 0.550080 1_3:-68090009 Msa0136260:CDS
GAACACAACAAAGCATTCAT+GGG 0.550109 1_3:-68088918 Msa0136260:CDS
TTCACTCCATCTAAGGTGGA+TGG 0.551670 1_3:+68088297 None:intergenic
AAATTCGCGTGCTCTAGGTA+TGG 0.552712 1_3:-68091504 Msa0136260:CDS
CCTCAGTAACCAAACAAAAG+TGG 0.552907 1_3:+68090849 None:intergenic
CACTCAATGCATGTCTGCAA+AGG 0.555274 1_3:+68090065 None:intergenic
CTATATCCAAAAGTGGTTGT+CGG 0.558538 1_3:+68088777 None:intergenic
TGTCAATCTAGGACAGAGGT+TGG 0.561454 1_3:-68090211 Msa0136260:CDS
GAACACAACTAGGAAAAGAA+AGG 0.562569 1_3:-68089696 Msa0136260:intron
CCAAAATACCCATCATGGCT+CGG 0.565207 1_3:+68088940 None:intergenic
TCAGCAGAATGTGCAAGGAC+TGG 0.567200 1_3:-68089291 Msa0136260:intron
GTTAATCAACACAGCATGCA+AGG 0.568293 1_3:-68089130 Msa0136260:CDS
GTAAGAAGAGGAACACAACT+AGG 0.569051 1_3:-68089706 Msa0136260:CDS
CTTCAAAACCAAGTAAGAAG+AGG 0.570332 1_3:-68089718 Msa0136260:CDS
GTGTTCCAAAATACCCATCA+TGG 0.572223 1_3:+68088935 None:intergenic
CTCAGTAACCAAACAAAAGT+GGG 0.573591 1_3:+68090850 None:intergenic
TTTCAAGCATATTCAAAAGG+AGG 0.574379 1_3:-68091103 Msa0136260:CDS
CTCTTCATGATATAATGAGA+TGG 0.574857 1_3:+68090013 None:intergenic
GCAGGAATCCAATTGTAGCC+GGG 0.576667 1_3:+68091804 None:intergenic
GTGACTATATTTGAACTCCA+TGG 0.577467 1_3:-68090574 Msa0136260:CDS
GTAAATAACTCTAACGACAA+TGG 0.578738 1_3:-68089803 Msa0136260:CDS
GGGCATAGCTTTCTTTGAAG+GGG 0.579841 1_3:-68091676 Msa0136260:CDS
GGACACAAAGGATACAAACT+AGG 0.580462 1_3:-68089949 Msa0136260:CDS
TGGAAATGGGTTCCATGGAT+GGG 0.580688 1_3:-68093078 Msa0136260:CDS
AGGACATGGCTTAGAGCGAT+GGG 0.585225 1_3:-68090829 Msa0136260:CDS
GAACTGTTGCTGTGAAAGTG+TGG 0.585833 1_3:+68088617 None:intergenic
GGTGCAGAAACTGGCAACAA+TGG 0.585898 1_3:-68089782 Msa0136260:CDS
TCAAATTCAATGCCGTTAGG+TGG 0.590422 1_3:+68091639 None:intergenic
AAAGTTCACTCCATCTAAGG+TGG 0.592009 1_3:+68088293 None:intergenic
TTCAAGCACACCGGAAACAA+AGG 0.592690 1_3:-68093149 Msa0136260:CDS
CACACATCATTATAACGTTG+AGG 0.592933 1_3:+68089926 None:intergenic
TCTAGGACAGAGGTTGGAGA+TGG 0.594905 1_3:-68090205 Msa0136260:CDS
AAAGTGGGTACCGACGTACA+TGG 0.600111 1_3:-68090515 Msa0136260:CDS
GCTAGTTCATCAAAATGGAA+TGG 0.603258 1_3:-68091783 Msa0136260:CDS
GCAAAGGCTGCAACTGTCAG+TGG 0.603434 1_3:-68093127 Msa0136260:CDS
AACACAAACCATTTGCTGCA+GGG 0.603531 1_3:+68089532 None:intergenic
GAAAGCTATGCCCCTCTTAG+GGG 0.607330 1_3:+68091686 None:intergenic
CTGACAAAGTGACAAGGCAT+AGG 0.608799 1_3:+68088115 None:intergenic
GGTACTCAGCAGAATGTGCA+AGG 0.609447 1_3:-68089296 Msa0136260:CDS
CGAGTTATCAGTTTGACAGA+GGG 0.612110 1_3:-68091173 Msa0136260:CDS
AAGTGGGTACCGACGTACAT+GGG 0.612237 1_3:-68090514 Msa0136260:CDS
TTAATGGAGCCACCTCATGA+TGG 0.620785 1_3:-68089160 Msa0136260:CDS
AACAGTTTGACATGAGATGG+TGG 0.621739 1_3:-68090603 Msa0136260:CDS
AAACTGCATCATTAAAGCTG+AGG 0.622221 1_3:+68090992 None:intergenic
CTGGTTGCTTCCCCTAAGAG+GGG 0.625137 1_3:-68091696 Msa0136260:CDS
GGAGTAACACCTGAGTCTGA+TGG 0.629153 1_3:-68091483 Msa0136260:CDS
AAAAGCAATGACGTACACTT+GGG 0.629160 1_3:+68090737 None:intergenic
ACTGTCGGAACGTTGAGGTG+TGG 0.629360 1_3:+68090468 None:intergenic
CTGCTCCTACCATCAGACTC+AGG 0.632022 1_3:+68091474 None:intergenic
AGTTCATCAAAATGGAATGG+TGG 0.634115 1_3:-68091780 Msa0136260:CDS
AAAGAAAGAGTTCACACTGT+CGG 0.634665 1_3:+68090453 None:intergenic
ACAACAAAGCATTCATGGGA+TGG 0.635224 1_3:-68088914 Msa0136260:intron
CATGGCTTAGAGCGATGGGA+GGG 0.635529 1_3:-68090825 Msa0136260:CDS
TCTTCTGAATAGGTATGATG+AGG 0.638772 1_3:-68090371 Msa0136260:CDS
TTGAGTGTTCTCCAACGTTG+CGG 0.639483 1_3:-68090049 Msa0136260:CDS
AGTGCAGTGAGTGGAAGTAT+GGG 0.641203 1_3:-68091756 Msa0136260:CDS
GTCAATGAAGAGCATCACAC+GGG 0.641639 1_3:-68091726 Msa0136260:CDS
CACACCGGAAACAAAGGCAA+AGG 0.644268 1_3:-68093143 Msa0136260:CDS
GGTATCATGTTCAAGCACAC+CGG 0.644645 1_3:-68093158 Msa0136260:CDS
ATGAACAGTTTGACATGAGA+TGG 0.648940 1_3:-68090606 Msa0136260:CDS
TGGATGTCAATCTAGGACAG+AGG 0.649330 1_3:-68090215 Msa0136260:CDS
ACATGGCTTAGAGCGATGGG+AGG 0.651552 1_3:-68090826 Msa0136260:CDS
AATGGTGGTAGTGCAGTGAG+TGG 0.652328 1_3:-68091765 Msa0136260:CDS
TATAGTTCAAGATTACGAGA+AGG 0.655112 1_3:-68090167 Msa0136260:CDS
TTCACACTGTCGGAACGTTG+AGG 0.659741 1_3:+68090463 None:intergenic
CTATTCTATAGATTTAAACG+AGG 0.660746 1_3:-68091067 Msa0136260:CDS
ACATAGTAACCATCATGAGG+TGG 0.662349 1_3:+68089151 None:intergenic
ACGAGTTATCAGTTTGACAG+AGG 0.665307 1_3:-68091174 Msa0136260:CDS
TGTCAATGAAGAGCATCACA+CGG 0.667976 1_3:-68091727 Msa0136260:CDS
AATGAAGAGCATCACACGGG+TGG 0.670295 1_3:-68091723 Msa0136260:CDS
TAACACCTGAGTCTGATGGT+AGG 0.675623 1_3:-68091479 Msa0136260:CDS
AAATACAGGAAGGTTACATG+AGG 0.676957 1_3:+68088418 None:intergenic
CTGTAGCAGATAGGACACAA+AGG 0.688770 1_3:-68089961 Msa0136260:CDS
AGTGAAACCAAACATCACCA+TGG 0.690952 1_3:+68090557 None:intergenic
TTAACATAGTAACCATCATG+AGG 0.693243 1_3:+68089148 None:intergenic
TTGGAACGAGTTGAGCTCAG+AGG 0.703393 1_3:-68090125 Msa0136260:CDS
ACAGTTTGACATGAGATGGT+GGG 0.706939 1_3:-68090602 Msa0136260:CDS
AGATTCCATCTACTATATCG+CGG 0.707268 1_3:+68088199 None:intergenic
TAGCTTCCTCAGAAGCTGTG+AGG 0.718551 1_3:-68088558 Msa0136260:three_prime_UTR
ATGGAACATAATGAATACCA+CGG 0.720170 1_3:+68088174 None:intergenic
AAGACATCTCCCATGTACGT+CGG 0.734961 1_3:+68090505 None:intergenic
GAAATGTCTAGACAATCTGG+TGG 0.763154 1_3:-68091228 Msa0136260:CDS
TAGTAGATGGAATCTCACCG+TGG 0.811751 1_3:-68088191 Msa0136260:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTAATTATTAATTATAA+AGG - chr1_3:68092455-68092474 Msa0136260:intron 0.0%
!!! TTTTTTATATCAATATTCTA+AGG - chr1_3:68088499-68088518 Msa0136260:three_prime_UTR 10.0%
!! AAAATTTCAAAATTGAATTA+TGG + chr1_3:68089018-68089037 None:intergenic 10.0%
!! TATTAAAAATAATAATGACG+TGG - chr1_3:68088659-68088678 Msa0136260:intron 15.0%
!! ATCAATAATTAGATAAGATT+AGG - chr1_3:68088771-68088790 Msa0136260:CDS 15.0%
!! TCAATAATTAGATAAGATTA+GGG - chr1_3:68088772-68088791 Msa0136260:CDS 15.0%
!! AAAAAATAAACAAAAACACA+AGG - chr1_3:68088888-68088907 Msa0136260:intron 15.0%
!! AAAAATAAACAAAAACACAA+GGG - chr1_3:68088889-68088908 Msa0136260:intron 15.0%
!! ATTATTATTACGCTTATTTA+TGG - chr1_3:68089208-68089227 Msa0136260:intron 15.0%
!! ATAATGTTAACATATACTTA+AGG + chr1_3:68089555-68089574 None:intergenic 15.0%
!!! GAACATTTTTGAATTTATAA+AGG - chr1_3:68090130-68090149 Msa0136260:CDS 15.0%
!!! AACGTTTAAGAAATATATTT+TGG - chr1_3:68090468-68090487 Msa0136260:CDS 15.0%
!!! ACGTTTAAGAAATATATTTT+GGG - chr1_3:68090469-68090488 Msa0136260:CDS 15.0%
!! TCTTTACTTGATAAAAATGA+AGG - chr1_3:68088304-68088323 Msa0136260:three_prime_UTR 20.0%
!! TCAATTCTCATAAATCTTAA+AGG + chr1_3:68088538-68088557 None:intergenic 20.0%
!! TTATTGATATATTCTTGCAT+AGG + chr1_3:68088759-68088778 None:intergenic 20.0%
!! AAAATGCAATTCTTAAACTT+TGG + chr1_3:68090869-68090888 None:intergenic 20.0%
!! TTAGATTATACAAATAAGCA+TGG - chr1_3:68092026-68092045 Msa0136260:intron 20.0%
!!! TGCTTAATAGATTGTAATTT+TGG - chr1_3:68092302-68092321 Msa0136260:intron 20.0%
!! AGAAGATTATATTCATGATT+AGG + chr1_3:68092418-68092437 None:intergenic 20.0%
!! TACTTTCCTATGAAATTATT+GGG - chr1_3:68092623-68092642 Msa0136260:intron 20.0%
!! TAATTTCCCAATAATTTCAT+AGG + chr1_3:68092632-68092651 None:intergenic 20.0%
!! CTAATAAGTAACTAAGTATA+TGG + chr1_3:68092783-68092802 None:intergenic 20.0%
!! CAATTTCTATGTAAAAATAC+AGG + chr1_3:68093108-68093127 None:intergenic 20.0%
!! TAATTTACCTAGATTTCAAT+GGG + chr1_3:68093131-68093150 None:intergenic 20.0%
!! AAAATTCAAAATGAACTTGA+CGG - chr1_3:68093162-68093181 Msa0136260:CDS 20.0%
!! ATATTCAGAAGAAATGAAAT+TGG + chr1_3:68093277-68093296 None:intergenic 20.0%
! AAACACAGTACAAAAACAAA+TGG - chr1_3:68088159-68088178 Msa0136260:three_prime_UTR 25.0%
! TCTGTAACAAATTTAACGTT+CGG + chr1_3:68088185-68088204 None:intergenic 25.0%
!!! TTAAATTTGTTACAGAGCAA+AGG - chr1_3:68088189-68088208 Msa0136260:three_prime_UTR 25.0%
! CAAAAAGTAATATCTGTTGT+AGG - chr1_3:68088327-68088346 Msa0136260:three_prime_UTR 25.0%
!!! ACGACTTGTCTTATTTTTAT+TGG - chr1_3:68088702-68088721 Msa0136260:intron 25.0%
! ACAACAAAATTAGTAGTAAC+AGG - chr1_3:68088912-68088931 Msa0136260:intron 25.0%
! AATTGAATTATGGATGAGAT+CGG + chr1_3:68089008-68089027 None:intergenic 25.0%
! TGAAGATAATTGTAGCATAA+AGG - chr1_3:68089290-68089309 Msa0136260:intron 25.0%
!! TTTTAATGACTAGAGTTTGA+TGG - chr1_3:68089630-68089649 Msa0136260:intron 25.0%
! TTTGGCATCAATAAATTCTT+TGG + chr1_3:68089988-68090007 None:intergenic 25.0%
! ACATTTCAACATACATCTTT+CGG + chr1_3:68090268-68090287 None:intergenic 25.0%
! GTATTTCAAGCATATTCAAA+AGG - chr1_3:68090403-68090422 Msa0136260:CDS 25.0%
! TCTATAGAATAGAAGAAGTT+GGG + chr1_3:68090434-68090453 None:intergenic 25.0%
! ATCTATAGAATAGAAGAAGT+TGG + chr1_3:68090435-68090454 None:intergenic 25.0%
! CTATTCTATAGATTTAAACG+AGG - chr1_3:68090442-68090461 Msa0136260:CDS 25.0%
! ATAGGTTAATTCTTCTGAAT+AGG - chr1_3:68091128-68091147 Msa0136260:CDS 25.0%
!! TTTCTAGCATTTAAAAGATC+AGG - chr1_3:68091885-68091904 Msa0136260:intron 25.0%
! AGTACCATAATATCCATTAA+GGG + chr1_3:68092199-68092218 None:intergenic 25.0%
! AGAACATTGTAATCATTTGA+TGG + chr1_3:68092260-68092279 None:intergenic 25.0%
! ATTGATATTCATATCGTTGT+AGG - chr1_3:68092526-68092545 Msa0136260:intron 25.0%
! TTGATATTCATATCGTTGTA+GGG - chr1_3:68092527-68092546 Msa0136260:intron 25.0%
! GTACTTTCCTATGAAATTAT+TGG - chr1_3:68092622-68092641 Msa0136260:intron 25.0%
! TACTTATTAGCATTTGAACT+TGG - chr1_3:68092793-68092812 Msa0136260:intron 25.0%
!! TGAATAGAATAATTTGTGCT+TGG - chr1_3:68092821-68092840 Msa0136260:intron 25.0%
! AATTTGTCTCTTCTTTGATA+TGG - chr1_3:68092928-68092947 Msa0136260:intron 25.0%
! AAAAGAGAATTGAAAGAACT+TGG - chr1_3:68092980-68092999 Msa0136260:intron 25.0%
! TTCTATGTAAAAATACAGGA+AGG + chr1_3:68093104-68093123 None:intergenic 25.0%
! GTAATTTACCTAGATTTCAA+TGG + chr1_3:68093132-68093151 None:intergenic 25.0%
! AAATTCAAAATGAACTTGAC+GGG - chr1_3:68093163-68093182 Msa0136260:CDS 25.0%
AAAGTAATATCTGTTGTAGG+AGG - chr1_3:68088330-68088349 Msa0136260:three_prime_UTR 30.0%
! GTTTCTTTTACGATTCTCTA+TGG - chr1_3:68088411-68088430 Msa0136260:three_prime_UTR 30.0%
TTTACGATTCTCTATGGAAA+TGG - chr1_3:68088417-68088436 Msa0136260:three_prime_UTR 30.0%
TTACGATTCTCTATGGAAAT+GGG - chr1_3:68088418-68088437 Msa0136260:three_prime_UTR 30.0%
! TATTCTAAGGATGACAAACA+TGG - chr1_3:68088512-68088531 Msa0136260:three_prime_UTR 30.0%
!! ATTTTTATTGGCTGTTTGCA+AGG - chr1_3:68088714-68088733 Msa0136260:intron 30.0%
AGATAAGATTAGGGAAAGAA+AGG - chr1_3:68088781-68088800 Msa0136260:CDS 30.0%
!!! AGCTAGGGTTTTGAAAATTT+GGG + chr1_3:68089043-68089062 None:intergenic 30.0%
!!! AAGCTAGGGTTTTGAAAATT+TGG + chr1_3:68089044-68089063 None:intergenic 30.0%
AAAGAAGAAACCTTAAAGAG+CGG + chr1_3:68089140-68089159 None:intergenic 30.0%
TTACGCTTATTTATGGTTTG+TGG - chr1_3:68089215-68089234 Msa0136260:intron 30.0%
AACGTGAATTATGAATGTAG+AGG - chr1_3:68089407-68089426 Msa0136260:intron 30.0%
TTCTAACTGTTTCCAAACAT+GGG + chr1_3:68089476-68089495 None:intergenic 30.0%
ATTCTAACTGTTTCCAAACA+TGG + chr1_3:68089477-68089496 None:intergenic 30.0%
!!! ATGCACTCTTATTTTTTGTC+TGG - chr1_3:68089588-68089607 Msa0136260:intron 30.0%
!! GCTAATTGGAAACTTTGTTT+TGG - chr1_3:68089657-68089676 Msa0136260:intron 30.0%
CATTTCAACATACATCTTTC+GGG + chr1_3:68090267-68090286 None:intergenic 30.0%
TTTCAAGCATATTCAAAAGG+AGG - chr1_3:68090406-68090425 Msa0136260:CDS 30.0%
!!! CTTATCGTTGCTTTTTATGT+AGG + chr1_3:68090555-68090574 None:intergenic 30.0%
TGATCAGTGACTATAACTTT+GGG + chr1_3:68090716-68090735 None:intergenic 30.0%
TTGATCAGTGACTATAACTT+TGG + chr1_3:68090717-68090736 None:intergenic 30.0%
! CTTTTCTCTTTGTCACATAT+TGG - chr1_3:68090790-68090809 Msa0136260:CDS 30.0%
! ATCACAAAAGACAGATTTTC+AGG + chr1_3:68090824-68090843 None:intergenic 30.0%
!!! AGAATTGCATTTTTAAGTCC+TGG - chr1_3:68090876-68090895 Msa0136260:CDS 30.0%
CTGTTTCACAAACTCTTTAA+GGG + chr1_3:68091107-68091126 None:intergenic 30.0%
ACTGTTTCACAAACTCTTTA+AGG + chr1_3:68091108-68091127 None:intergenic 30.0%
AAGAGTTTGTGAAACAGTAT+AGG - chr1_3:68091110-68091129 Msa0136260:CDS 30.0%
! AAATTCCAAGTTGAAGTGTT+GGG - chr1_3:68091265-68091284 Msa0136260:CDS 30.0%
TATAGTTCAAGATTACGAGA+AGG - chr1_3:68091342-68091361 Msa0136260:CDS 30.0%
!!! ATGAAGAGTTTTTGGTAACT+TGG - chr1_3:68091365-68091384 Msa0136260:CDS 30.0%
! TGTCGATTGTTCGAATATAA+AGG - chr1_3:68091418-68091437 Msa0136260:CDS 30.0%
CTCTTCATGATATAATGAGA+TGG + chr1_3:68091499-68091518 None:intergenic 30.0%
CTCATTATATCATGAAGAGA+TGG - chr1_3:68091500-68091519 Msa0136260:CDS 30.0%
AGCAACATTATAACTCTCTT+CGG + chr1_3:68091647-68091666 None:intergenic 30.0%
GTAAATAACTCTAACGACAA+TGG - chr1_3:68091706-68091725 Msa0136260:CDS 30.0%
TGATACGAGAATCACTTTAT+AGG - chr1_3:68091912-68091931 Msa0136260:intron 30.0%
CAGATCATGAATGAAAAAAG+AGG + chr1_3:68092004-68092023 None:intergenic 30.0%
ATAGAAATGCAATTCTCAAG+AGG + chr1_3:68092061-68092080 None:intergenic 30.0%
!!! CTTTTAGGATAATCTTAGCT+CGG - chr1_3:68092164-68092183 Msa0136260:intron 30.0%
! ATTGCCCTTAATGGATATTA+TGG - chr1_3:68092192-68092211 Msa0136260:intron 30.0%
GAGTACCATAATATCCATTA+AGG + chr1_3:68092200-68092219 None:intergenic 30.0%
TTAACATAGTAACCATCATG+AGG + chr1_3:68092364-68092383 None:intergenic 30.0%
!! TGATACAAGTTTGCTAACTA+TGG - chr1_3:68092674-68092693 Msa0136260:intron 30.0%
!! GATACAAGTTTGCTAACTAT+GGG - chr1_3:68092675-68092694 Msa0136260:intron 30.0%
TTGCACATAACCTTAATTGT+AGG - chr1_3:68092858-68092877 Msa0136260:intron 30.0%
TAAAAAGTTCACTCCATCTA+AGG + chr1_3:68093222-68093241 None:intergenic 30.0%
ATGGAACATAATGAATACCA+CGG + chr1_3:68093338-68093357 None:intergenic 30.0%
TATGTTCCATCTATTATGTC+TGG - chr1_3:68093348-68093367 Msa0136260:intron 30.0%
ATCTATTATGTCTGGTATCA+CGG - chr1_3:68093356-68093375 Msa0136260:intron 30.0%
ATGGATGGGAGAAAATGTTT+CGG - chr1_3:68088445-68088464 Msa0136260:three_prime_UTR 35.0%
GAGAAAATGTTTCGGTATCA+TGG - chr1_3:68088453-68088472 Msa0136260:three_prime_UTR 35.0%
GAAGCTTGAAATTTCACCAT+TGG - chr1_3:68088558-68088577 Msa0136260:three_prime_UTR 35.0%
TTGAAATTTCACCATTGGTG+TGG - chr1_3:68088563-68088582 Msa0136260:three_prime_UTR 35.0%
ATTATTCCATTCCACACCAA+TGG + chr1_3:68088577-68088596 None:intergenic 35.0%
TGGAATGGAATAATAGCAAC+AGG - chr1_3:68088583-68088602 Msa0136260:three_prime_UTR 35.0%
GGAATGGAATAATAGCAACA+GGG - chr1_3:68088584-68088603 Msa0136260:three_prime_UTR 35.0%
ATTAGGGAAAGAAAGGCAAT+GGG - chr1_3:68088788-68088807 Msa0136260:CDS 35.0%
!!! GCTAGGGTTTTGAAAATTTG+GGG + chr1_3:68089042-68089061 None:intergenic 35.0%
CGAGTACGAAAAATATGAAG+TGG + chr1_3:68089100-68089119 None:intergenic 35.0%
!! TCATTTTTCACCGCTCTTTA+AGG - chr1_3:68089127-68089146 Msa0136260:CDS 35.0%
AGTGTGAAGAACAAAACACA+GGG + chr1_3:68089173-68089192 None:intergenic 35.0%
AAGTGTGAAGAACAAAACAC+AGG + chr1_3:68089174-68089193 None:intergenic 35.0%
! TATGGTTTGTGGAAAATGCT+TGG - chr1_3:68089226-68089245 Msa0136260:intron 35.0%
TGGAATGCTAAAACATGATG+CGG - chr1_3:68089246-68089265 Msa0136260:intron 35.0%
GTGAATTATGAATGTAGAGG+TGG - chr1_3:68089410-68089429 Msa0136260:intron 35.0%
! AGTTTGATGGTTTCGCTAAT+TGG - chr1_3:68089643-68089662 Msa0136260:intron 35.0%
! TTGGTGCATTTTACAGTAAG+TGG - chr1_3:68089676-68089695 Msa0136260:intron 35.0%
TTCCTGCTAGTTCATCAAAA+TGG - chr1_3:68089721-68089740 Msa0136260:CDS 35.0%
!! TTCCATTTTGATGAACTAGC+AGG + chr1_3:68089726-68089745 None:intergenic 35.0%
GCTAGTTCATCAAAATGGAA+TGG - chr1_3:68089726-68089745 Msa0136260:CDS 35.0%
AGTTCATCAAAATGGAATGG+TGG - chr1_3:68089729-68089748 Msa0136260:CDS 35.0%
GTTTCAAATTCAATGCCGTT+AGG + chr1_3:68089876-68089895 None:intergenic 35.0%
! TCAAGAGTATGCCAAATCTA+TGG - chr1_3:68089920-68089939 Msa0136260:CDS 35.0%
! CAAGAGTATGCCAAATCTAT+GGG - chr1_3:68089921-68089940 Msa0136260:CDS 35.0%
!!! TCTGCTGTTTTTAATGGAAG+TGG + chr1_3:68089952-68089971 None:intergenic 35.0%
!!! TGATCGTCTGCTGTTTTTAA+TGG + chr1_3:68089958-68089977 None:intergenic 35.0%
AAATGTTCCATTTCCCATCT+GGG + chr1_3:68090118-68090137 None:intergenic 35.0%
AAAATGTTCCATTTCCCATC+TGG + chr1_3:68090119-68090138 None:intergenic 35.0%
! TCATGAACTTTTACCAGCTT+TGG - chr1_3:68090160-68090179 Msa0136260:CDS 35.0%
!! CAGCTTTGGCATATCATTTT+CGG - chr1_3:68090174-68090193 Msa0136260:CDS 35.0%
! GCATATCATTTTCGGATTCA+TGG - chr1_3:68090182-68090201 Msa0136260:CDS 35.0%
GTTGAAATGTCTAGACAATC+TGG - chr1_3:68090278-68090297 Msa0136260:CDS 35.0%
TCAAAACATTGGGTCAATCA+TGG - chr1_3:68090307-68090326 Msa0136260:CDS 35.0%
CAAAACATTGGGTCAATCAT+GGG - chr1_3:68090308-68090327 Msa0136260:CDS 35.0%
AAACTGCATCATTAAAGCTG+AGG + chr1_3:68090520-68090539 None:intergenic 35.0%
ACATCCAAGCAATATAGGTT+GGG + chr1_3:68090615-68090634 None:intergenic 35.0%
AATGCACATCCAAGCAATAT+AGG + chr1_3:68090620-68090639 None:intergenic 35.0%
TATATTGCTTGGATGTGCAT+TGG - chr1_3:68090619-68090638 Msa0136260:CDS 35.0%
CTCAGTAACCAAACAAAAGT+GGG + chr1_3:68090662-68090681 None:intergenic 35.0%
TTCTTCAATTGCTTCCTTCA+AGG + chr1_3:68090747-68090766 None:intergenic 35.0%
AAAAGCAATGACGTACACTT+GGG + chr1_3:68090775-68090794 None:intergenic 35.0%
ATGAACAGTTTGACATGAGA+TGG - chr1_3:68090903-68090922 Msa0136260:CDS 35.0%
GTGACTATATTTGAACTCCA+TGG - chr1_3:68090935-68090954 Msa0136260:CDS 35.0%
AAAGAAAGAGTTCACACTGT+CGG + chr1_3:68091059-68091078 None:intergenic 35.0%
TCTTCTGAATAGGTATGATG+AGG - chr1_3:68091138-68091157 Msa0136260:CDS 35.0%
ACTTAAATCTCCTTCACCTT+GGG - chr1_3:68091201-68091220 Msa0136260:CDS 35.0%
!! ATTTGTTTTTCCCAAGGTGA+AGG + chr1_3:68091214-68091233 None:intergenic 35.0%
!! GTTGACATTTGTTTTTCCCA+AGG + chr1_3:68091220-68091239 None:intergenic 35.0%
! GAAATTCCAAGTTGAAGTGT+TGG - chr1_3:68091264-68091283 Msa0136260:CDS 35.0%
GACCAAAGATGCCAAAATTA+GGG - chr1_3:68091522-68091541 Msa0136260:CDS 35.0%
!! TTCCCTAATTTTGGCATCTT+TGG + chr1_3:68091527-68091546 None:intergenic 35.0%
CACACATCATTATAACGTTG+AGG + chr1_3:68091586-68091605 None:intergenic 35.0%
!!! CTTACTTGGTTTTGAAGCAA+GGG + chr1_3:68091788-68091807 None:intergenic 35.0%
!!! TCTTACTTGGTTTTGAAGCA+AGG + chr1_3:68091789-68091808 None:intergenic 35.0%
CTTCAAAACCAAGTAAGAAG+AGG - chr1_3:68091791-68091810 Msa0136260:CDS 35.0%
GAACACAACTAGGAAAAGAA+AGG - chr1_3:68091813-68091832 Msa0136260:CDS 35.0%
!! GCTTACGTGTTAAGTTGTTT+TGG - chr1_3:68091861-68091880 Msa0136260:CDS 35.0%
AAATGCAATTCTCAAGAGGA+TGG + chr1_3:68092057-68092076 None:intergenic 35.0%
! ACATGTGCTTTCGTTCTTTT+AGG - chr1_3:68092149-68092168 Msa0136260:intron 35.0%
GCATGTACAGTTGAACTTAA+TGG - chr1_3:68092333-68092352 Msa0136260:intron 35.0%
! GAACACAACAAAGCATTCAT+GGG - chr1_3:68092591-68092610 Msa0136260:intron 35.0%
CTATATCCAAAAGTGGTTGT+CGG + chr1_3:68092735-68092754 None:intergenic 35.0%
TAAGGTTATGTGCAAACAGA+CGG + chr1_3:68092853-68092872 None:intergenic 35.0%
GTTACATGAGGTAAACTTCA+AGG + chr1_3:68093082-68093101 None:intergenic 35.0%
AAATACAGGAAGGTTACATG+AGG + chr1_3:68093094-68093113 None:intergenic 35.0%
GAAATTGCCCATTGAAATCT+AGG - chr1_3:68093121-68093140 Msa0136260:CDS 35.0%
! TGGATGGATGTTTTCATCAA+TGG + chr1_3:68093199-68093218 None:intergenic 35.0%
! ATTGAACCTGACCACATTTT+TGG - chr1_3:68093243-68093262 Msa0136260:intron 35.0%
TGGATTTCTCACCAAAAATG+TGG + chr1_3:68093257-68093276 None:intergenic 35.0%
AGATTCCATCTACTATATCG+CGG + chr1_3:68093313-68093332 None:intergenic 35.0%
GTGATACCAGACATAATAGA+TGG + chr1_3:68093357-68093376 None:intergenic 35.0%
GATAAGAAGCAGCAAGATGA+AGG - chr1_3:68088133-68088152 Msa0136260:three_prime_UTR 40.0%
! GAAACATTTTCTCCCATCCA+TGG + chr1_3:68088446-68088465 None:intergenic 40.0%
AAATGTTTCGGTATCATGGC+AGG - chr1_3:68088457-68088476 Msa0136260:three_prime_UTR 40.0%
ATTTCACCATTGGTGTGGAA+TGG - chr1_3:68088568-68088587 Msa0136260:three_prime_UTR 40.0%
GGAACAGAAAAGGATGATGA+TGG - chr1_3:68088611-68088630 Msa0136260:CDS 40.0%
!! ACAGAAAAGGATGATGATGG+TGG - chr1_3:68088614-68088633 Msa0136260:CDS 40.0%
! TTTATTGGCTGTTTGCAAGG+AGG - chr1_3:68088717-68088736 Msa0136260:intron 40.0%
GATTAGGGAAAGAAAGGCAA+TGG - chr1_3:68088787-68088806 Msa0136260:CDS 40.0%
GTGTGAAGAACAAAACACAG+GGG + chr1_3:68089172-68089191 None:intergenic 40.0%
GGAATGCTAAAACATGATGC+GGG - chr1_3:68089247-68089266 Msa0136260:intron 40.0%
TCTGTTCAGTGTTCCTGATT+GGG - chr1_3:68089447-68089466 Msa0136260:intron 40.0%
!! TGTCAATGAAGAGCATCACA+CGG - chr1_3:68089782-68089801 Msa0136260:CDS 40.0%
TCAAATTCAATGCCGTTAGG+TGG + chr1_3:68089873-68089892 None:intergenic 40.0%
AGTGGTGAATCCCATAGATT+TGG + chr1_3:68089934-68089953 None:intergenic 40.0%
ACGTGAAGAAAAACCCAGAT+GGG - chr1_3:68090102-68090121 Msa0136260:CDS 40.0%
AGAAAAACCCAGATGGGAAA+TGG - chr1_3:68090108-68090127 Msa0136260:CDS 40.0%
CGAAAATGATATGCCAAAGC+TGG + chr1_3:68090176-68090195 None:intergenic 40.0%
GAAATGTCTAGACAATCTGG+TGG - chr1_3:68090281-68090300 Msa0136260:CDS 40.0%
ACGAGTTATCAGTTTGACAG+AGG - chr1_3:68090335-68090354 Msa0136260:CDS 40.0%
CGAGTTATCAGTTTGACAGA+GGG - chr1_3:68090336-68090355 Msa0136260:CDS 40.0%
! TTGCCTTTTGCTCCTTTTGT+TGG - chr1_3:68090575-68090594 Msa0136260:CDS 40.0%
ACTCCAACAAAAGGAGCAAA+AGG + chr1_3:68090581-68090600 None:intergenic 40.0%
TGATGGTTCACTCCAACAAA+AGG + chr1_3:68090590-68090609 None:intergenic 40.0%
CACATCCAAGCAATATAGGT+TGG + chr1_3:68090616-68090635 None:intergenic 40.0%
!! AGACTAAGCCCACTTTTGTT+TGG - chr1_3:68090651-68090670 Msa0136260:CDS 40.0%
CCTCAGTAACCAAACAAAAG+TGG + chr1_3:68090663-68090682 None:intergenic 40.0%
!! CCACTTTTGTTTGGTTACTG+AGG - chr1_3:68090660-68090679 Msa0136260:CDS 40.0%
TTGTTTGGTTACTGAGGACA+TGG - chr1_3:68090666-68090685 Msa0136260:CDS 40.0%
TGATCAAGACAAAGCCTTGA+AGG - chr1_3:68090730-68090749 Msa0136260:CDS 40.0%
GAAAAGCAATGACGTACACT+TGG + chr1_3:68090776-68090795 None:intergenic 40.0%
AACAGTTTGACATGAGATGG+TGG - chr1_3:68090906-68090925 Msa0136260:CDS 40.0%
ACAGTTTGACATGAGATGGT+GGG - chr1_3:68090907-68090926 Msa0136260:CDS 40.0%
! TTGAACTCCATGGTGATGTT+TGG - chr1_3:68090945-68090964 Msa0136260:CDS 40.0%
AGTGAAACCAAACATCACCA+TGG + chr1_3:68090955-68090974 None:intergenic 40.0%
TTCACTCATTGTACGAAGAC+CGG - chr1_3:68090969-68090988 Msa0136260:CDS 40.0%
!! ATGGGAGATGTCTTTTTAGC+TGG - chr1_3:68091013-68091032 Msa0136260:CDS 40.0%
CACTTAAATCTCCTTCACCT+TGG - chr1_3:68091200-68091219 Msa0136260:CDS 40.0%
! CGAGAAGGATGAAGAGTTTT+TGG - chr1_3:68091357-68091376 Msa0136260:CDS 40.0%
GGACCAAAGATGCCAAAATT+AGG - chr1_3:68091521-68091540 Msa0136260:CDS 40.0%
! TGCTACAGGTTCCCTAATTT+TGG + chr1_3:68091536-68091555 None:intergenic 40.0%
GGACACAAAGGATACAAACT+AGG - chr1_3:68091560-68091579 Msa0136260:CDS 40.0%
GTTGTGTTCCTCTTCTTACT+TGG + chr1_3:68091802-68091821 None:intergenic 40.0%
GTAAGAAGAGGAACACAACT+AGG - chr1_3:68091803-68091822 Msa0136260:CDS 40.0%
AGGAAAAGAAAGGTCAGTTC+TGG - chr1_3:68091823-68091842 Msa0136260:CDS 40.0%
! AAAGGTCAGTTCTGGTAATG+TGG - chr1_3:68091831-68091850 Msa0136260:CDS 40.0%
! AACACAAACCATTTGCTGCA+GGG + chr1_3:68091980-68091999 None:intergenic 40.0%
! AAACACAAACCATTTGCTGC+AGG + chr1_3:68091981-68092000 None:intergenic 40.0%
ACATAGTAACCATCATGAGG+TGG + chr1_3:68092361-68092380 None:intergenic 40.0%
GTTAATCAACACAGCATGCA+AGG - chr1_3:68092379-68092398 Msa0136260:intron 40.0%
CATGATTAGGACAACTTACC+AGG + chr1_3:68092405-68092424 None:intergenic 40.0%
GTAGGGTCCATTGAATTCTA+TGG - chr1_3:68092544-68092563 Msa0136260:intron 40.0%
GTGTTCCAAAATACCCATCA+TGG + chr1_3:68092577-68092596 None:intergenic 40.0%
! GGAACACAACAAAGCATTCA+TGG - chr1_3:68092590-68092609 Msa0136260:intron 40.0%
! ACAACAAAGCATTCATGGGA+TGG - chr1_3:68092595-68092614 Msa0136260:intron 40.0%
!! CAAGTTTGCTAACTATGGGT+TGG - chr1_3:68092679-68092698 Msa0136260:intron 40.0%
!! AACTATGGGTTGGTTCATGT+AGG - chr1_3:68092689-68092708 Msa0136260:intron 40.0%
!! ACTATGGGTTGGTTCATGTA+GGG - chr1_3:68092690-68092709 Msa0136260:intron 40.0%
CTGAAGGCTATATCCAAAAG+TGG + chr1_3:68092742-68092761 None:intergenic 40.0%
! CACTTTTGGATATAGCCTTC+AGG - chr1_3:68092740-68092759 Msa0136260:intron 40.0%
CATGTCATGAACAAACCTGA+AGG + chr1_3:68092758-68092777 None:intergenic 40.0%
TCAGGCTCATCCTACAATTA+AGG + chr1_3:68092871-68092890 None:intergenic 40.0%
AAACATCCATCCACCTTAGA+TGG - chr1_3:68093206-68093225 Msa0136260:intron 40.0%
AAAGTTCACTCCATCTAAGG+TGG + chr1_3:68093219-68093238 None:intergenic 40.0%
TTCTCACCAAAAATGTGGTC+AGG + chr1_3:68093252-68093271 None:intergenic 40.0%
GGTATCATGTTCAAGCACAC+CGG - chr1_3:68088351-68088370 Msa0136260:three_prime_UTR 45.0%
TTCAAGCACACCGGAAACAA+AGG - chr1_3:68088360-68088379 Msa0136260:three_prime_UTR 45.0%
! CTCTATGGAAATGGGTTCCA+TGG - chr1_3:68088426-68088445 Msa0136260:three_prime_UTR 45.0%
! ATGGAAATGGGTTCCATGGA+TGG - chr1_3:68088430-68088449 Msa0136260:three_prime_UTR 45.0%
! TGGAAATGGGTTCCATGGAT+GGG - chr1_3:68088431-68088450 Msa0136260:three_prime_UTR 45.0%
GAATAATAGCAACAGGGTCG+TGG - chr1_3:68088590-68088609 Msa0136260:exon 45.0%
GAAAGAAAGGCAATGGGATG+CGG - chr1_3:68088794-68088813 Msa0136260:CDS 45.0%
AAACGCGAGTGAGAAAGCTA+GGG + chr1_3:68089058-68089077 None:intergenic 45.0%
AAAACGCGAGTGAGAAAGCT+AGG + chr1_3:68089059-68089078 None:intergenic 45.0%
GAACAAAACACAGGGGAAGA+AGG + chr1_3:68089165-68089184 None:intergenic 45.0%
CTCTGTTCAGTGTTCCTGAT+TGG - chr1_3:68089446-68089465 Msa0136260:intron 45.0%
AGCAGGAATCCAATTGTAGC+CGG + chr1_3:68089709-68089728 None:intergenic 45.0%
TAGTGCAGTGAGTGGAAGTA+TGG - chr1_3:68089752-68089771 Msa0136260:CDS 45.0%
! AGTGCAGTGAGTGGAAGTAT+GGG - chr1_3:68089753-68089772 Msa0136260:CDS 45.0%
!! GTCAATGAAGAGCATCACAC+GGG - chr1_3:68089783-68089802 Msa0136260:CDS 45.0%
AGAAAGCTATGCCCCTCTTA+GGG + chr1_3:68089827-68089846 None:intergenic 45.0%
AAGAAAGCTATGCCCCTCTT+AGG + chr1_3:68089828-68089847 None:intergenic 45.0%
! AGGGGCATAGCTTTCTTTGA+AGG - chr1_3:68089831-68089850 Msa0136260:CDS 45.0%
GGGGCATAGCTTTCTTTGAA+GGG - chr1_3:68089832-68089851 Msa0136260:CDS 45.0%
! GGGCATAGCTTTCTTTGAAG+GGG - chr1_3:68089833-68089852 Msa0136260:CDS 45.0%
! AGCTTTCTTTGAAGGGGACA+CGG - chr1_3:68089839-68089858 Msa0136260:CDS 45.0%
! ACGGATTTTGAGCCACCTAA+CGG - chr1_3:68089858-68089877 Msa0136260:CDS 45.0%
ATACCTAGAGCACGCGAATT+TGG + chr1_3:68090006-68090025 None:intergenic 45.0%
! AAATTCGCGTGCTCTAGGTA+TGG - chr1_3:68090005-68090024 Msa0136260:CDS 45.0%
TAACACCTGAGTCTGATGGT+AGG - chr1_3:68090030-68090049 Msa0136260:CDS 45.0%
CACGTGAAGAAAAACCCAGA+TGG - chr1_3:68090101-68090120 Msa0136260:CDS 45.0%
TCTGGTGGCTGTCAAAACAT+TGG - chr1_3:68090296-68090315 Msa0136260:CDS 45.0%
CTGGTGGCTGTCAAAACATT+GGG - chr1_3:68090297-68090316 Msa0136260:CDS 45.0%
!! CAGTATCTGGCTTTGGATGA+GGG - chr1_3:68090359-68090378 Msa0136260:CDS 45.0%
! GCAATATAGGTTGGGAGTGA+TGG + chr1_3:68090607-68090626 None:intergenic 45.0%
CACTCCCAACCTATATTGCT+TGG - chr1_3:68090608-68090627 Msa0136260:CDS 45.0%
GTCAAACTGTTCATCTGTCC+AGG + chr1_3:68090897-68090916 None:intergenic 45.0%
TGTACGAAGACCGGAAAAAG+TGG - chr1_3:68090978-68090997 Msa0136260:CDS 45.0%
GTACGAAGACCGGAAAAAGT+GGG - chr1_3:68090979-68090998 Msa0136260:CDS 45.0%
AAGACATCTCCCATGTACGT+CGG + chr1_3:68091007-68091026 None:intergenic 45.0%
GGTGAAGGAGATTTAAGTGC+AGG + chr1_3:68091199-68091218 None:intergenic 45.0%
CTACACCCAACACTTCAACT+TGG + chr1_3:68091273-68091292 None:intergenic 45.0%
GTGTAGCTGGATGTCAATCT+AGG - chr1_3:68091287-68091306 Msa0136260:CDS 45.0%
! TGGATGTCAATCTAGGACAG+AGG - chr1_3:68091294-68091313 Msa0136260:CDS 45.0%
! TGTCAATCTAGGACAGAGGT+TGG - chr1_3:68091298-68091317 Msa0136260:CDS 45.0%
CACTCAATGCATGTCTGCAA+AGG + chr1_3:68091447-68091466 None:intergenic 45.0%
TTGAGTGTTCTCCAACGTTG+CGG - chr1_3:68091460-68091479 Msa0136260:CDS 45.0%
TTAGGGAACCTGTAGCAGAT+AGG - chr1_3:68091539-68091558 Msa0136260:CDS 45.0%
CTTTGTGTCCTATCTGCTAC+AGG + chr1_3:68091550-68091569 None:intergenic 45.0%
CTGTAGCAGATAGGACACAA+AGG - chr1_3:68091548-68091567 Msa0136260:CDS 45.0%
AACGACAATGGTGCAGAAAC+TGG - chr1_3:68091718-68091737 Msa0136260:CDS 45.0%
TCAAGATACCCTGCAGCAAA+TGG - chr1_3:68091969-68091988 Msa0136260:intron 45.0%
CTTGATGCAATGCAAGCAGT+AGG + chr1_3:68092095-68092114 None:intergenic 45.0%
CTACTGCTTGCATTGCATCA+AGG - chr1_3:68092093-68092112 Msa0136260:intron 45.0%
TCGGATGCAATTGCCCTTAA+TGG - chr1_3:68092183-68092202 Msa0136260:intron 45.0%
TTAATGGAGCCACCTCATGA+TGG - chr1_3:68092349-68092368 Msa0136260:intron 45.0%
CTCGGAGCCATAGAATTCAA+TGG + chr1_3:68092554-68092573 None:intergenic 45.0%
CCAAAATACCCATCATGGCT+CGG + chr1_3:68092572-68092591 None:intergenic 45.0%
! TATCGTCCGACAACCACTTT+TGG - chr1_3:68092726-68092745 Msa0136260:intron 45.0%
! TTGCTGTGAAAGTGTGGATC+AGG + chr1_3:68092889-68092908 None:intergenic 45.0%
GAACTGTTGCTGTGAAAGTG+TGG + chr1_3:68092895-68092914 None:intergenic 45.0%
! TGAACTTGACGGGTGAGAAT+TGG - chr1_3:68093173-68093192 Msa0136260:intron 45.0%
! TTCACTCCATCTAAGGTGGA+TGG + chr1_3:68093215-68093234 None:intergenic 45.0%
AGTCACCGCGATATAGTAGA+TGG - chr1_3:68093305-68093324 Msa0136260:intron 45.0%
TAGTAGATGGAATCTCACCG+TGG - chr1_3:68093318-68093337 Msa0136260:intron 45.0%
CACACCGGAAACAAAGGCAA+AGG - chr1_3:68088366-68088385 Msa0136260:three_prime_UTR 50.0%
! GCAGCCTTTGCCTTTGTTTC+CGG + chr1_3:68088373-68088392 None:intergenic 50.0%
ACAGGGTCGTGGAACAGAAA+AGG - chr1_3:68088601-68088620 Msa0136260:exon 50.0%
GTTTGCAAGGAGGACGTGTT+AGG - chr1_3:68088727-68088746 Msa0136260:intron 50.0%
! AGAGAGTGCAAAAACGCGTG+TGG - chr1_3:68088861-68088880 Msa0136260:intron 50.0%
TATGAAGTGGATCCGCGAGT+GGG + chr1_3:68089087-68089106 None:intergenic 50.0%
ATATGAAGTGGATCCGCGAG+TGG + chr1_3:68089088-68089107 None:intergenic 50.0%
GCAGGAATCCAATTGTAGCC+GGG + chr1_3:68089708-68089727 None:intergenic 50.0%
! AATGGTGGTAGTGCAGTGAG+TGG - chr1_3:68089744-68089763 Msa0136260:CDS 50.0%
!! AATGAAGAGCATCACACGGG+TGG - chr1_3:68089786-68089805 Msa0136260:CDS 50.0%
ACTGGTTGCTTCCCCTAAGA+GGG - chr1_3:68089812-68089831 Msa0136260:CDS 50.0%
GAAAGCTATGCCCCTCTTAG+GGG + chr1_3:68089826-68089845 None:intergenic 50.0%
ATGCCAAATTCGCGTGCTCT+AGG - chr1_3:68090000-68090019 Msa0136260:CDS 50.0%
GGAGTAACACCTGAGTCTGA+TGG - chr1_3:68090026-68090045 Msa0136260:CDS 50.0%
GTTTGACAGAGGGCAGTATC+TGG - chr1_3:68090346-68090365 Msa0136260:CDS 50.0%
!! GCAGTATCTGGCTTTGGATG+AGG - chr1_3:68090358-68090377 Msa0136260:CDS 50.0%
!! TGGCTTTGGATGAGGGAGAT+GGG - chr1_3:68090366-68090385 Msa0136260:CDS 50.0%
AGGACATGGCTTAGAGCGAT+GGG - chr1_3:68090680-68090699 Msa0136260:CDS 50.0%
!!! ACGTCGGTACCCACTTTTTC+CGG + chr1_3:68090991-68091010 None:intergenic 50.0%
!! AAAGTGGGTACCGACGTACA+TGG - chr1_3:68090994-68091013 Msa0136260:CDS 50.0%
!! AAGTGGGTACCGACGTACAT+GGG - chr1_3:68090995-68091014 Msa0136260:CDS 50.0%
TTCACACTGTCGGAACGTTG+AGG + chr1_3:68091049-68091068 None:intergenic 50.0%
!! GTTGAAGTGTTGGGTGTAGC+TGG - chr1_3:68091274-68091293 Msa0136260:CDS 50.0%
! TCTAGGACAGAGGTTGGAGA+TGG - chr1_3:68091304-68091323 Msa0136260:CDS 50.0%
! TTGGAACGAGTTGAGCTCAG+AGG - chr1_3:68091384-68091403 Msa0136260:CDS 50.0%
CACTTGAACAACCGCAACGT+TGG + chr1_3:68091474-68091493 None:intergenic 50.0%
GGTGCAGAAACTGGCAACAA+TGG - chr1_3:68091727-68091746 Msa0136260:CDS 50.0%
!! TCTTGAGCGTCGACAAGTAC+AGG + chr1_3:68091955-68091974 None:intergenic 50.0%
GTTACGTGAAGCGCATGCTA+TGG + chr1_3:68092131-68092150 None:intergenic 50.0%
GGTACTCAGCAGAATGTGCA+AGG - chr1_3:68092213-68092232 Msa0136260:intron 50.0%
TCAGCAGAATGTGCAAGGAC+TGG - chr1_3:68092218-68092237 Msa0136260:intron 50.0%
!!! CCGAGCCATGATGGGTATTT+TGG - chr1_3:68092569-68092588 Msa0136260:intron 50.0%
!! ATGGGTTGGTTCATGTAGGG+AGG - chr1_3:68092693-68092712 Msa0136260:intron 50.0%
!! TGGGTTGGTTCATGTAGGGA+GGG - chr1_3:68092694-68092713 Msa0136260:intron 50.0%
GTTCATGTAGGGAGGGCAAT+TGG - chr1_3:68092701-68092720 Msa0136260:intron 50.0%
TAGCTTCCTCAGAAGCTGTG+AGG - chr1_3:68092951-68092970 Msa0136260:intron 50.0%
CAATCACCTCACAGCTTCTG+AGG + chr1_3:68092960-68092979 None:intergenic 50.0%
GCAAAGGCTGCAACTGTCAG+TGG - chr1_3:68088382-68088401 Msa0136260:three_prime_UTR 55.0%
CTGCAACTGTCAGTGGTGCT+TGG - chr1_3:68088389-68088408 Msa0136260:three_prime_UTR 55.0%
AGGACGCGCTGTTAATGCAG+AGG - chr1_3:68088932-68088951 Msa0136260:CDS 55.0%
!!! GCGTTTTTTTCCCCCACTCG+CGG - chr1_3:68089072-68089091 Msa0136260:intron 55.0%
ATGAAGTGGATCCGCGAGTG+GGG + chr1_3:68089086-68089105 None:intergenic 55.0%
CAAACATGGGCAGCCCAATC+AGG + chr1_3:68089463-68089482 None:intergenic 55.0%
CTGATTGGGCTGCCCATGTT+TGG - chr1_3:68089461-68089480 Msa0136260:intron 55.0%
ATCCAATTGTAGCCGGGCTG+CGG + chr1_3:68089702-68089721 None:intergenic 55.0%
! CACTGGTTGCTTCCCCTAAG+AGG - chr1_3:68089811-68089830 Msa0136260:CDS 55.0%
CTGGTTGCTTCCCCTAAGAG+GGG - chr1_3:68089813-68089832 Msa0136260:CDS 55.0%
CTGCTCCTACCATCAGACTC+AGG + chr1_3:68090038-68090057 None:intergenic 55.0%
! CAGAGGGCAGTATCTGGCTT+TGG - chr1_3:68090352-68090371 Msa0136260:CDS 55.0%
!! CTGGCTTTGGATGAGGGAGA+TGG - chr1_3:68090365-68090384 Msa0136260:CDS 55.0%
GGGAGATGGGCAAGTTATGC+TGG - chr1_3:68090379-68090398 Msa0136260:CDS 55.0%
GAGGACATGGCTTAGAGCGA+TGG - chr1_3:68090679-68090698 Msa0136260:CDS 55.0%
ACATGGCTTAGAGCGATGGG+AGG - chr1_3:68090683-68090702 Msa0136260:CDS 55.0%
CATGGCTTAGAGCGATGGGA+GGG - chr1_3:68090684-68090703 Msa0136260:CDS 55.0%
ACTGTCGGAACGTTGAGGTG+TGG + chr1_3:68091044-68091063 None:intergenic 55.0%
TCAACACAGCATGCAAGGCC+TGG - chr1_3:68092384-68092403 Msa0136260:intron 55.0%
TCTATGGCTCCGAGCCATGA+TGG - chr1_3:68092560-68092579 Msa0136260:intron 55.0%
CTATGGCTCCGAGCCATGAT+GGG - chr1_3:68092561-68092580 Msa0136260:intron 55.0%
TGAAGTGGATCCGCGAGTGG+GGG + chr1_3:68089085-68089104 None:intergenic 60.0%
TACAGTAAGTGGCCGCAGCC+CGG - chr1_3:68089687-68089706 Msa0136260:intron 60.0%
GCATCACACGGGTGGTGCAC+TGG - chr1_3:68089794-68089813 Msa0136260:CDS 65.0%
GGCCGCAGCCCGGCTACAAT+TGG - chr1_3:68089697-68089716 Msa0136260:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 68088130 68093401 68088130 ID=Msa0136260;Name=Msa0136260
chr1_3 mRNA 68088130 68093401 68088130 ID=Msa0136260-mRNA-1;Parent=Msa0136260;Name=Msa0136260-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.75|0.66|0.77|1|1|9|474|908
chr1_3 exon 68088130 68088651 68088130 ID=Msa0136260-mRNA-1:exon:23529;Parent=Msa0136260-mRNA-1
chr1_3 exon 68088770 68088820 68088770 ID=Msa0136260-mRNA-1:exon:23528;Parent=Msa0136260-mRNA-1
chr1_3 exon 68088915 68088983 68088915 ID=Msa0136260-mRNA-1:exon:23527;Parent=Msa0136260-mRNA-1
chr1_3 exon 68089126 68089197 68089126 ID=Msa0136260-mRNA-1:exon:23526;Parent=Msa0136260-mRNA-1
chr1_3 exon 68089292 68089360 68089292 ID=Msa0136260-mRNA-1:exon:23525;Parent=Msa0136260-mRNA-1
chr1_3 exon 68089541 68089597 68089541 ID=Msa0136260-mRNA-1:exon:23524;Parent=Msa0136260-mRNA-1
chr1_3 exon 68089697 68091888 68089697 ID=Msa0136260-mRNA-1:exon:23523;Parent=Msa0136260-mRNA-1
chr1_3 exon 68093050 68093182 68093050 ID=Msa0136260-mRNA-1:exon:23522;Parent=Msa0136260-mRNA-1
chr1_3 exon 68093366 68093401 68093366 ID=Msa0136260-mRNA-1:exon:23521;Parent=Msa0136260-mRNA-1
chr1_3 CDS 68093366 68093401 68093366 ID=Msa0136260-mRNA-1:cds;Parent=Msa0136260-mRNA-1
chr1_3 CDS 68093050 68093182 68093050 ID=Msa0136260-mRNA-1:cds;Parent=Msa0136260-mRNA-1
chr1_3 CDS 68089697 68091888 68089697 ID=Msa0136260-mRNA-1:cds;Parent=Msa0136260-mRNA-1
chr1_3 CDS 68089541 68089597 68089541 ID=Msa0136260-mRNA-1:cds;Parent=Msa0136260-mRNA-1
chr1_3 CDS 68089292 68089360 68089292 ID=Msa0136260-mRNA-1:cds;Parent=Msa0136260-mRNA-1
chr1_3 CDS 68089126 68089197 68089126 ID=Msa0136260-mRNA-1:cds;Parent=Msa0136260-mRNA-1
chr1_3 CDS 68088915 68088983 68088915 ID=Msa0136260-mRNA-1:cds;Parent=Msa0136260-mRNA-1
chr1_3 CDS 68088770 68088820 68088770 ID=Msa0136260-mRNA-1:cds;Parent=Msa0136260-mRNA-1
chr1_3 CDS 68088604 68088651 68088604 ID=Msa0136260-mRNA-1:cds;Parent=Msa0136260-mRNA-1
chr1_3 three_prime_UTR 68088130 68088603 68088130 ID=Msa0136260-mRNA-1:three_prime_utr;Parent=Msa0136260-mRNA-1
Gene Sequence

>Msa0136260

ATGGATAAGAAGCAGCAAGATGAAGGAAAAAACACAGAGGTATCATGTTCAAGCACACCGGAAACAAAGGCAAAGGCTGCAACTGTCAGTGGTGCTTGGTTTCTTTTACGATTCTCTATGGAAATGGGTTCCATGGATGGGAGAAAATGTTTCGGTATCATGGCAGGAAAGTTTGATGGTTTCGCTAATTGGAAACTTTGTTTTGGTGCATTTTACAGTAAGTGGCCGCAGCCCGGCTACAATTGGATTCCTGCTAGTTCATCAAAATGGAATGGTGGTAGTGCAGTGAGTGGAAGTATGGGTGACTCTGTCAATGAAGAGCATCACACGGGTGGTGCACTGGTTGCTTCCCCTAAGAGGGGCATAGCTTTCTTTGAAGGGGACACGGATTTTGAGCCACCTAACGGCATTGAATTTGAAACTCATGAAGCAGCATATTCATTTTATCAAGAGTATGCCAAATCTATGGGATTCACCACTTCCATTAAAAACAGCAGACGATCAAAGAAGACCAAAGAATTTATTGATGCCAAATTCGCGTGCTCTAGGTATGGAGTAACACCTGAGTCTGATGGTAGGAGCAGTCGAAGATCGAGTGTAAAGAAGACAGATTGCAAAGCTTGCATGCACGTGAAGAAAAACCCAGATGGGAAATGGAACATTTTTGAATTTATAAAGGATCATAATCATGAACTTTTACCAGCTTTGGCATATCATTTTCGGATTCATGGAAACGTGAAGTTAGCTGACAAGAATAATATTGATATCTTGCATGCTGTTAGTGAACGTACCCGAAAGATGTATGTTGAAATGTCTAGACAATCTGGTGGCTGTCAAAACATTGGGTCAATCATGGGTGATACGAGTTATCAGTTTGACAGAGGGCAGTATCTGGCTTTGGATGAGGGAGATGGGCAAGTTATGCTGGAGTATTTCAAGCATATTCAAAAGGAGGATCCCAACTTCTTCTATTCTATAGATTTAAACGAGGAACAACGTTTAAGAAATATATTTTGGGTTGATTCAAAAAGCATCGATGATTACCTCAGCTTTAATGATGCAGTTTCATTTGATACTTCCTACATAAAAAGCAACGATAAGTTGCCTTTTGCTCCTTTTGTTGGAGTGAACCATCACTCCCAACCTATATTGCTTGGATGTGCATTGGTTGCTGATGAGACTAAGCCCACTTTTGTTTGGTTACTGAGGACATGGCTTAGAGCGATGGGAGGGCAAGCTCCCAAAGTTATAGTCACTGATCAAGACAAAGCCTTGAAGGAAGCAATTGAAGAAGTCTTCCCAAGTGTACGTCATTGCTTTTCTCTTTGTCACATATTGGAAAAGATACCTGAAAATCTGTCTTTTGTGATAAAACAGTACAAGAACTTCTTGCCAAAGTTTAAGAATTGCATTTTTAAGTCCTGGACAGATGAACAGTTTGACATGAGATGGTGGGAAATAGTGACTATATTTGAACTCCATGGTGATGTTTGGTTTCACTCATTGTACGAAGACCGGAAAAAGTGGGTACCGACGTACATGGGAGATGTCTTTTTAGCTGGAATGTCCACACCTCAACGTTCCGACAGTGTGAACTCTTTCTTTGACAAATACATTCATAAGAAAATCACCCTTAAAGAGTTTGTGAAACAGTATAGGTTAATTCTTCTGAATAGGTATGATGAGGAAGAAATCGCAGATTTTGATACATTGCACAAACAACCTGCACTTAAATCTCCTTCACCTTGGGAAAAACAAATGTCAACAATTTATACACATGCAATATTTAAGAAATTCCAAGTTGAAGTGTTGGGTGTAGCTGGATGTCAATCTAGGACAGAGGTTGGAGATGGAACTGTTGTGAGATATATAGTTCAAGATTACGAGAAGGATGAAGAGTTTTTGGTAACTTGGAACGAGTTGAGCTCAGAGGTCTCTTGCTTCTGTCGATTGTTCGAATATAAAGGTTTCCTTTGCAGACATGCATTGAGTGTTCTCCAACGTTGCGGTTGTTCAAGTGTTCCATCTCATTATATCATGAAGAGATGGACCAAAGATGCCAAAATTAGGGAACCTGTAGCAGATAGGACACAAAGGATACAAACTAGGCCTCAACGTTATAATGATGTGTGCAAACGAAGTATTGCGTTGAGTGAAGAAGGATCATCATCCGAAGAGAGTTATAATGTTGCTTTGCGCGCGCTTGTTGATGCTTTGAAGAACTGTGTACTTGTAAATAACTCTAACGACAATGGTGCAGAAACTGGCAACAATGGTTACAGTCTTCGCGAAGCAGAAGAATATCAGAGTACCCTTGCTTCAAAACCAAGTAAGAAGAGGAACACAACTAGGAAAAGAAAGGTGCAACAAGAGCAGAGTCCTGTACTTGTCGACGCTCAAGATACCCTGCAGCAAATGGATAATCTTAGCTCGGATGCAATTGCCCTTAATGGATATTATGGTACTCAGCAGAATGTGCAAGGACTGCATGTACAGTTGAACTTAATGGAGCCACCTCATGATGGTTACTATGTTAATCAACACAGCATGCAAGGCCTGGGTCCATTGAATTCTATGGCTCCGAGCCATGATGGGTATTTTGGAACACAACAAAGCATTCATGGGATGGGAGGGCAATTGGAGTATCGTCCGACAACCACTTTTGGATATAGCCTTCAGGATGAGCCTGATCCACACTTTCACAGCAACAGTTCAAGAAATACTTAG
Protein sequence

>Msa0136260

MDKKQQDEGKNTEVSCSSTPETKAKAATVSGAWFLLRFSMEMGSMDGRKCFGIMAGKFDGFANWKLCFGAFYSKWPQPGYNWIPASSSKWNGGSAVSGSMGDSVNEEHHTGGALVASPKRGIAFFEGDTDFEPPNGIEFETHEAAYSFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDGRSSRRSSVKKTDCKACMHVKKNPDGKWNIFEFIKDHNHELLPALAYHFRIHGNVKLADKNNIDILHAVSERTRKMYVEMSRQSGGCQNIGSIMGDTSYQFDRGQYLALDEGDGQVMLEYFKHIQKEDPNFFYSIDLNEEQRLRNIFWVDSKSIDDYLSFNDAVSFDTSYIKSNDKLPFAPFVGVNHHSQPILLGCALVADETKPTFVWLLRTWLRAMGGQAPKVIVTDQDKALKEAIEEVFPSVRHCFSLCHILEKIPENLSFVIKQYKNFLPKFKNCIFKSWTDEQFDMRWWEIVTIFELHGDVWFHSLYEDRKKWVPTYMGDVFLAGMSTPQRSDSVNSFFDKYIHKKITLKEFVKQYRLILLNRYDEEEIADFDTLHKQPALKSPSPWEKQMSTIYTHAIFKKFQVEVLGVAGCQSRTEVGDGTVVRYIVQDYEKDEEFLVTWNELSSEVSCFCRLFEYKGFLCRHALSVLQRCGCSSVPSHYIMKRWTKDAKIREPVADRTQRIQTRPQRYNDVCKRSIALSEEGSSSEESYNVALRALVDALKNCVLVNNSNDNGAETGNNGYSLREAEEYQSTLASKPSKKRNTTRKRKVQQEQSPVLVDAQDTLQQMDNLSSDAIALNGYYGTQQNVQGLHVQLNLMEPPHDGYYVNQHSMQGLGPLNSMAPSHDGYFGTQQSIHGMGGQLEYRPTTTFGYSLQDEPDPHFHSNSSRNT*