AlfalfaGEDB | Msa0186430

M. sativa cultivar zhongmu-4 / Msa0186430

KEGG: -
GO: GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016567 GO:0019538 GO:0023051 GO:0023057 GO:0031461 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007 GO:0070647 GO:0071704 GO:0080008 GO:1901419 GO:1901420 GO:1901564 GO:1902494 GO:1905957 GO:1905958 GO:1990234
PFAM: PF00400.35

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0186430	XP_013462258.1	87.714	350	4	2	1	311	1	350	0.0	614

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0186430	sp\|Q6NPN9\|DWA2_ARATH	64.000	350	87	2	1	311	1	350	1.07e-162	459

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0186430	A0A072V4M1	87.714	350	4	2	1	311	1	350	0.0	614

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0186430	Msa0385810	0.861312	1.120531e-63	-8.615850e-47
Msa0186430	Msa0404260	0.860791	1.614466e-63	-8.615850e-47
Msa0186430	Msa0523320	0.871689	5.643356e-67	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0186430	MtrunA17_Chr3g0143791	87.714	350	4	2	1	311	1	350	0.0	614
Msa0186430	MtrunA17_Chr4g0036951	26.131	199	139	5	102	296	183	377	3.79e-12	66.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0186430	AT1G20540.1	66.571	350	77	3	1	310	1	350	6.16e-172	480
Msa0186430	AT1G76260.1	64.000	350	87	2	1	311	1	350	1.09e-163	459
Msa0186430	AT2G16780.1	22.066	213	158	5	89	296	176	385	1.99e-11	64.7

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Find 106 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTATGCTTGTGGAGTT+TGG	0.356150	2_1:-1128122	Msa0186430:CDS
AAAGTTTCAGATACACTGTC+CGG	0.590541	2_1:+1129503	None:intergenic
AACAAGGTCCCAGATCTCAT+TGG	0.464387	2_1:+1129069	None:intergenic
AACAGGATTAGATGTTACAT+TGG	0.530626	2_1:-1125174	Msa0186430:three_prime_UTR
AACGGACAGATGACTCTGCT+TGG	0.526905	2_1:+1125671	None:intergenic
AAGTGTAACCCAGAGTATGA+CGG	0.647448	2_1:-1126143	Msa0186430:CDS
AATTGTTGATTTCTAATCTA+TGG	0.193483	2_1:+1125126	None:intergenic
AATTTATCATGCCTTCCAGT+TGG	0.550107	2_1:+1128163	None:intergenic
ACAAGGTCCCAGATCTCATT+GGG	0.486004	2_1:+1129070	None:intergenic
ACAAGTATGTTGTTCTTTCT+AGG	0.205190	2_1:+1126877	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAAACTTTCCATTCATTCA+GGG	-	chr2_1:1124940-1124959	Msa0186430:three_prime_UTR	30.0%
GAGTGGTAATAATGAGAATT+GGG	+	chr2_1:1125050-1125069	None:intergenic	30.0%
AGAGTGGTAATAATGAGAAT+TGG	+	chr2_1:1125051-1125070	None:intergenic	30.0%
TTGGATTAATTAATGGAGAG+TGG	+	chr2_1:1125067-1125086	None:intergenic	30.0%
AAATCCGATGAAAACTGAAT+TGG	+	chr2_1:1125237-1125256	None:intergenic	30.0%
TCGTTACATCACATTATTAC+AGG	-	chr2_1:1125274-1125293	Msa0186430:three_prime_UTR	30.0%
CAATAAGCACAAACTATCTA+TGG	+	chr2_1:1125464-1125483	None:intergenic	30.0%
TCACCTTTATCAACAACAAA+AGG	+	chr2_1:1125663-1125682	None:intergenic	30.0%
GATGTAATTCTCTCTAATTG+AGG	+	chr2_1:1125741-1125760	None:intergenic	30.0%
AAACGAAGAAATCTGCAAAA+GGG	+	chr2_1:1125808-1125827	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	1124888	1129563	1124888	ID=Msa0186430;Name=Msa0186430
chr2_1	mRNA	1124888	1129563	1124888	ID=Msa0186430-mRNA-1;Parent=Msa0186430;Name=Msa0186430-mRNA-1;_AED=0.28;_eAED=0.28;_QI=106\|0.83\|0.84\|1\|0.83\|0.84\|13\|442\|311
chr2_1	exon	1124888	1125371	1124888	ID=Msa0186430-mRNA-1:exon:517;Parent=Msa0186430-mRNA-1
chr2_1	exon	1125471	1125529	1125471	ID=Msa0186430-mRNA-1:exon:516;Parent=Msa0186430-mRNA-1
chr2_1	exon	1125620	1125693	1125620	ID=Msa0186430-mRNA-1:exon:515;Parent=Msa0186430-mRNA-1
chr2_1	exon	1125768	1125838	1125768	ID=Msa0186430-mRNA-1:exon:514;Parent=Msa0186430-mRNA-1
chr2_1	exon	1126133	1126178	1126133	ID=Msa0186430-mRNA-1:exon:513;Parent=Msa0186430-mRNA-1
chr2_1	exon	1126439	1126527	1126439	ID=Msa0186430-mRNA-1:exon:512;Parent=Msa0186430-mRNA-1
chr2_1	exon	1126879	1126948	1126879	ID=Msa0186430-mRNA-1:exon:511;Parent=Msa0186430-mRNA-1
chr2_1	exon	1127164	1127291	1127164	ID=Msa0186430-mRNA-1:exon:510;Parent=Msa0186430-mRNA-1
chr2_1	exon	1128099	1128198	1128099	ID=Msa0186430-mRNA-1:exon:509;Parent=Msa0186430-mRNA-1
chr2_1	exon	1128736	1128743	1128736	ID=Msa0186430-mRNA-1:exon:508;Parent=Msa0186430-mRNA-1
chr2_1	exon	1129036	1129155	1129036	ID=Msa0186430-mRNA-1:exon:507;Parent=Msa0186430-mRNA-1
chr2_1	exon	1129237	1129320	1129237	ID=Msa0186430-mRNA-1:exon:506;Parent=Msa0186430-mRNA-1
chr2_1	exon	1129413	1129563	1129413	ID=Msa0186430-mRNA-1:exon:505;Parent=Msa0186430-mRNA-1
chr2_1	five_prime_UTR	1129458	1129563	1129458	ID=Msa0186430-mRNA-1:five_prime_utr;Parent=Msa0186430-mRNA-1
chr2_1	CDS	1129413	1129457	1129413	ID=Msa0186430-mRNA-1:cds;Parent=Msa0186430-mRNA-1
chr2_1	CDS	1129237	1129320	1129237	ID=Msa0186430-mRNA-1:cds;Parent=Msa0186430-mRNA-1
chr2_1	CDS	1129036	1129155	1129036	ID=Msa0186430-mRNA-1:cds;Parent=Msa0186430-mRNA-1
chr2_1	CDS	1128736	1128743	1128736	ID=Msa0186430-mRNA-1:cds;Parent=Msa0186430-mRNA-1
chr2_1	CDS	1128099	1128198	1128099	ID=Msa0186430-mRNA-1:cds;Parent=Msa0186430-mRNA-1
chr2_1	CDS	1127164	1127291	1127164	ID=Msa0186430-mRNA-1:cds;Parent=Msa0186430-mRNA-1
chr2_1	CDS	1126879	1126948	1126879	ID=Msa0186430-mRNA-1:cds;Parent=Msa0186430-mRNA-1
chr2_1	CDS	1126439	1126527	1126439	ID=Msa0186430-mRNA-1:cds;Parent=Msa0186430-mRNA-1
chr2_1	CDS	1126133	1126178	1126133	ID=Msa0186430-mRNA-1:cds;Parent=Msa0186430-mRNA-1
chr2_1	CDS	1125768	1125838	1125768	ID=Msa0186430-mRNA-1:cds;Parent=Msa0186430-mRNA-1
chr2_1	CDS	1125620	1125693	1125620	ID=Msa0186430-mRNA-1:cds;Parent=Msa0186430-mRNA-1
chr2_1	CDS	1125471	1125529	1125471	ID=Msa0186430-mRNA-1:cds;Parent=Msa0186430-mRNA-1
chr2_1	CDS	1125330	1125371	1125330	ID=Msa0186430-mRNA-1:cds;Parent=Msa0186430-mRNA-1
chr2_1	three_prime_UTR	1124888	1125329	1124888	ID=Msa0186430-mRNA-1:three_prime_utr;Parent=Msa0186430-mRNA-1

Gene Sequence

>Msa0186430

ATGCAAGCTGTATCATCTGGTATCGGTTATGGTCTCAAATATCAGGCTAGATGCATATCAGATGTAAAAGCAGATACAGATCACACAAGTTTCCTCGCCGGAACTCTTAGCCTTAAAGAAGAAAATGAGGTACATCTTATTCGGCTTTCGGCAAATGGAACCGAACTTTTCTGTGAGGGATTGTTTTCACATCCCAATGAGATCTGGGACCTTGTTTCTTGTCCTTTTGATCAGCGCATTTTCTCAACCATTCCGGATATTCTTTGGTGGCCAACTGGAAGGCATGATAAATTGATTAGCATCGATGATGAAAACCTATGCTTGTGGAGTTTGGATGTTTCCAAGAAAACTGCACAGGTACAATCCCAAGATTCAGCTGGTATGATGCACAAGTTATCTGGAGGGGCATGGGATCCACATGACATGAATTCTGTAGCTGCAACTTCTGAATCATCTCTCCAGTTTTGGGATGTGAGAACGATGAAGAAGACACTTTCAATTGAATGTTCCCATGTCCGCAGTGTTGATTACCATCCTAGAAAGAACAACATACTTGTTACAGCAGAGCATGAGTCAGGGATACACATTTGGGATCAAAGAAAACCAAAAGTTCCAATCCAAGAGCTTCCAGGCCACACACATTGGACATGGATTGTCAAGTGTAACCCAGAGTATGACGGAATGATCCTGAGTGCTGGAACGGATTCGACTGTCAACTTGTGGTCGGCCTCGATAAACCATGATGAGTTACCAACTGAAAGCCAAGCAGAGTCATCTGTCCGTTTGGTTGATCCACTGCTTAATACATACAGTGATTATGAAGACAGTATTTATGGGCTTACATGGAGTTCTCGTCAACCATGGATTTTTGCATCTTTGTCCTATGACGGAAGGGTGGTTCTAGAATCTATAAAGCCTTTCATCTCCAAAAAATGA

Protein sequence

>Msa0186430

MQAVSSGIGYGLKYQARCISDVKADTDHTSFLAGTLSLKEENEVHLIRLSANGTELFCEGLFSHPNEIWDLVSCPFDQRIFSTIPDILWWPTGRHDKLISIDDENLCLWSLDVSKKTAQVQSQDSAGMMHKLSGGAWDPHDMNSVAATSESSLQFWDVRTMKKTLSIECSHVRSVDYHPRKNNILVTAEHESGIHIWDQRKPKVPIQELPGHTHWTWIVKCNPEYDGMILSAGTDSTVNLWSASINHDELPTESQAESSVRLVDPLLNTYSDYEDSIYGLTWSSRQPWIFASLSYDGRVVLESIKPFISKK*