Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385810 | XP_013462258.1 | 98.857 | 350 | 4 | 0 | 1 | 350 | 1 | 350 | 0.0 | 718 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385810 | sp|Q6NPN9|DWA2_ARATH | 70.571 | 350 | 103 | 0 | 1 | 350 | 1 | 350 | 0.0 | 531 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385810 | A0A072V4M1 | 98.857 | 350 | 4 | 0 | 1 | 350 | 1 | 350 | 0.0 | 718 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012080 | Msa0385810 | 0.821205 | 4.569378e-53 | -8.615850e-47 |
| Msa0027230 | Msa0385810 | 0.800252 | 1.572507e-48 | -8.615850e-47 |
| Msa0052610 | Msa0385810 | 0.802299 | 5.991633e-49 | -8.615850e-47 |
| Msa0062120 | Msa0385810 | 0.810259 | 1.259844e-50 | -8.615850e-47 |
| Msa0075220 | Msa0385810 | 0.820473 | 6.733351e-53 | -8.615850e-47 |
| Msa0094120 | Msa0385810 | 0.802461 | 5.549804e-49 | -8.615850e-47 |
| Msa0110970 | Msa0385810 | 0.803305 | 3.714343e-49 | -8.615850e-47 |
| Msa0116770 | Msa0385810 | 0.827724 | 1.335754e-54 | -8.615850e-47 |
| Msa0136070 | Msa0385810 | 0.802406 | 5.695027e-49 | -8.615850e-47 |
| Msa0165210 | Msa0385810 | 0.816019 | 6.862770e-52 | -8.615850e-47 |
| Msa0165220 | Msa0385810 | 0.814108 | 1.822271e-51 | -8.615850e-47 |
| Msa0167520 | Msa0385810 | 0.801883 | 7.296977e-49 | -8.615850e-47 |
| Msa0186430 | Msa0385810 | 0.861312 | 1.120531e-63 | -8.615850e-47 |
| Msa0225740 | Msa0385810 | 0.811195 | 7.903830e-51 | -8.615850e-47 |
| Msa0385810 | Msa0404260 | 0.996854 | 3.503352e-233 | -8.615850e-47 |
| Msa0385810 | Msa0406770 | 0.800894 | 1.163515e-48 | -8.615850e-47 |
| Msa0385810 | Msa0417880 | 0.813100 | 3.036031e-51 | -8.615850e-47 |
| Msa0385810 | Msa0422850 | 0.811021 | 8.622027e-51 | -8.615850e-47 |
| Msa0385810 | Msa0422930 | 0.811843 | 5.714701e-51 | -8.615850e-47 |
| Msa0385810 | Msa0432770 | 0.800148 | 1.651134e-48 | -8.615850e-47 |
| Msa0385810 | Msa0475790 | 0.814322 | 1.634485e-51 | -8.615850e-47 |
| Msa0385810 | Msa0479170 | 0.802997 | 4.301312e-49 | -8.615850e-47 |
| Msa0385810 | Msa0479200 | 0.809657 | 1.697944e-50 | -8.615850e-47 |
| Msa0385810 | Msa0523270 | 0.860591 | 1.856475e-63 | -8.615850e-47 |
| Msa0385810 | Msa0523320 | 0.901770 | 1.914300e-78 | -8.615850e-47 |
| Msa0385810 | Msa0529890 | 0.807639 | 4.580896e-50 | -8.615850e-47 |
| Msa0385810 | Msa0574890 | 0.808637 | 2.808306e-50 | -8.615850e-47 |
| Msa0385810 | Msa0585560 | 0.801316 | 9.538833e-49 | -8.615850e-47 |
| Msa0385810 | Msa0625720 | 0.807471 | 4.974765e-50 | -8.615850e-47 |
| Msa0385810 | Msa0661790 | 0.802670 | 5.025129e-49 | -8.615850e-47 |
| Msa0385810 | Msa0691980 | 0.805396 | 1.362526e-49 | -8.615850e-47 |
| Msa0385810 | Msa0844570 | 0.808333 | 3.260372e-50 | -8.615850e-47 |
| Msa0385810 | Msa0869780 | 0.807022 | 6.193071e-50 | -8.615850e-47 |
| Msa0385810 | Msa1019640 | 0.800314 | 1.527597e-48 | -8.615850e-47 |
| Msa0385810 | Msa1029070 | 0.803629 | 3.181766e-49 | -8.615850e-47 |
| Msa0385810 | Msa1066490 | 0.845609 | 3.650825e-59 | -8.615850e-47 |
| Msa0385810 | Msa1079230 | 0.840449 | 8.638549e-58 | -8.615850e-47 |
| Msa0385810 | Msa1106700 | 0.837883 | 3.996829e-57 | -8.615850e-47 |
| Msa0385810 | Msa1124110 | 0.833336 | 5.655215e-56 | -8.615850e-47 |
| Msa0385810 | Msa1156160 | 0.804042 | 2.611323e-49 | -8.615850e-47 |
| Msa0385810 | Msa1168950 | 0.847856 | 8.874015e-60 | -8.615850e-47 |
| Msa0385810 | Msa1169040 | 0.839702 | 1.353170e-57 | -8.615850e-47 |
| Msa0385810 | Msa1171710 | 0.801442 | 8.988780e-49 | -8.615850e-47 |
| Msa0385810 | Msa1193290 | 0.800477 | 1.414857e-48 | -8.615850e-47 |
| Msa0385810 | Msa1203710 | 0.807535 | 4.821064e-50 | -8.615850e-47 |
| Msa0385810 | Msa1206850 | 0.821433 | 4.048431e-53 | -8.615850e-47 |
| Msa0385810 | Msa1257130 | 0.826496 | 2.627857e-54 | -8.615850e-47 |
| Msa0385810 | Msa1265590 | 0.806172 | 9.358564e-50 | -8.615850e-47 |
| Msa0385810 | Msa1370010 | 0.809065 | 2.274249e-50 | -8.615850e-47 |
| Msa0385810 | Msa1415640 | 0.802052 | 6.735732e-49 | -8.615850e-47 |
| Msa0385810 | Msa1423350 | 0.802846 | 4.621920e-49 | -8.615850e-47 |
| Msa0385810 | Msa1451160 | 0.806598 | 7.608862e-50 | -8.615850e-47 |
| Msa0262050 | Msa0385810 | 0.802842 | 4.629835e-49 | -8.615850e-47 |
| Msa0263080 | Msa0385810 | 0.812167 | 4.859403e-51 | -8.615850e-47 |
| Msa0264870 | Msa0385810 | 0.807772 | 4.293406e-50 | -8.615850e-47 |
| Msa0292400 | Msa0385810 | 0.816190 | 6.282183e-52 | -8.615850e-47 |
| Msa0299870 | Msa0385810 | 0.803995 | 2.670824e-49 | -8.615850e-47 |
| Msa0300690 | Msa0385810 | 0.811714 | 6.099008e-51 | -8.615850e-47 |
| Msa0329320 | Msa0385810 | 0.804521 | 2.075835e-49 | -8.615850e-47 |
| Msa0340290 | Msa0385810 | 0.813170 | 2.931621e-51 | -8.615850e-47 |
| Msa0358890 | Msa0385810 | 0.804267 | 2.344902e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385810 | MtrunA17_Chr3g0143791 | 98.857 | 350 | 4 | 0 | 1 | 350 | 1 | 350 | 0.0 | 718 |
| Msa0385810 | MtrunA17_Chr4g0036951 | 26.131 | 199 | 139 | 5 | 141 | 335 | 183 | 377 | 5.17e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385810 | AT1G20540.1 | 74.571 | 350 | 88 | 1 | 1 | 349 | 1 | 350 | 0.0 | 566 |
| Msa0385810 | AT1G76260.1 | 70.571 | 350 | 103 | 0 | 1 | 350 | 1 | 350 | 0.0 | 531 |
| Msa0385810 | AT1G29260.1 | 26.486 | 185 | 126 | 5 | 100 | 280 | 86 | 264 | 5.53e-12 | 66.2 |
| Msa0385810 | AT2G16780.1 | 22.066 | 213 | 158 | 5 | 128 | 335 | 176 | 385 | 2.94e-11 | 64.7 |
Find 118 sgRNAs with CRISPR-Local
Find 306 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAATCATCTCTCCAGTTT+TGG | 0.158181 | 3_1:+89535630 | Msa0385810:CDS |
| GTGATTTCTATCATATTATT+TGG | 0.172174 | 3_1:+89537767 | Msa0385810:three_prime_UTR |
| GATTATGAAGACAGTATTTA+TGG | 0.189984 | 3_1:+89537204 | Msa0385810:CDS |
| AATTGTTGATTTCTAATCTA+TGG | 0.193483 | 3_1:-89537697 | None:intergenic |
| ACAAGTATGTTGTTCTTTCT+AGG | 0.205190 | 3_1:-89535936 | None:intergenic |
| TCGTCTTGTAGTTTATAAAA+TGG | 0.213244 | 3_1:+89537868 | Msa0385810:three_prime_UTR |
| CTGAAACTTTCCATTCATTC+AGG | 0.222081 | 3_1:+89533321 | Msa0385810:five_prime_UTR |
| AGCTCTTGGATTGGAACTTT+TGG | 0.235539 | 3_1:-89536356 | None:intergenic |
| TTATAAAATGGTACATGAAA+TGG | 0.297176 | 3_1:+89537880 | Msa0385810:three_prime_UTR |
| TTCTTTAAGGCTAAGAGTTC+CGG | 0.300672 | 3_1:-89533565 | None:intergenic |
| TACTACCAAGCAGTATTCTT+TGG | 0.302862 | 3_1:+89534622 | Msa0385810:intron |
| TCTAATCTATGGATGATTCT+TGG | 0.307783 | 3_1:-89537686 | None:intergenic |
| TATTACAGGTACATCTTATT+CGG | 0.313591 | 3_1:+89533670 | Msa0385810:intron |
| TGAAGTCATTATGTAATCTA+TGG | 0.325468 | 3_1:+89537815 | Msa0385810:three_prime_UTR |
| TTCTCAACCGTCTATTCTAA+TGG | 0.326617 | 3_1:+89533789 | Msa0385810:CDS |
| TACTCACCATTTGATCTTAC+CGG | 0.335068 | 3_1:-89534157 | None:intergenic |
| TTATAAACTACAAGACGAAT+TGG | 0.348330 | 3_1:-89537863 | None:intergenic |
| TGGGTTTGATGTTGGTTAAC+AGG | 0.348792 | 3_1:+89537632 | Msa0385810:three_prime_UTR |
| AAACCTATGCTTGTGGAGTT+TGG | 0.356150 | 3_1:+89534689 | Msa0385810:CDS |
| GGTATGATGCACAAGTTATC+TGG | 0.357598 | 3_1:+89535563 | Msa0385810:CDS |
| CTTATTCGGCTTTCGGCAAA+TGG | 0.360330 | 3_1:+89533684 | Msa0385810:CDS |
| TATAAACTACAAGACGAATT+GGG | 0.365585 | 3_1:-89537862 | None:intergenic |
| ATGAGTCAGGGATACACATT+TGG | 0.372896 | 3_1:+89536321 | Msa0385810:CDS |
| GGTACATCTTATTCGGCTTT+CGG | 0.373404 | 3_1:+89533677 | Msa0385810:intron |
| TCGTTCTCACATCCCAAAAC+TGG | 0.382275 | 3_1:-89535643 | None:intergenic |
| GTATCATCTGGTATCGGTTA+TGG | 0.388037 | 3_1:+89533385 | Msa0385810:CDS |
| GTTACAGCAGAGCATGAGTC+AGG | 0.388558 | 3_1:+89536308 | Msa0385810:CDS |
| TTTCACATCCCAATGAGATC+TGG | 0.396774 | 3_1:+89533733 | Msa0385810:CDS |
| GCATCATACCAGCTGAATCT+TGG | 0.397662 | 3_1:-89535550 | None:intergenic |
| TATAAAATGGTACATGAAAT+GGG | 0.399439 | 3_1:+89537881 | Msa0385810:three_prime_UTR |
| ATGGCACCGTAGGGTGTGTT+TGG | 0.407591 | 3_1:-89533271 | None:intergenic |
| TGTCAGTAATTTCCTGCCTC+TGG | 0.411250 | 3_1:+89537564 | Msa0385810:three_prime_UTR |
| AGCAGCAATATGGCAGATTC+CGG | 0.413631 | 3_1:+89534074 | Msa0385810:CDS |
| TGGCAGATTCCGGAGTTATA+TGG | 0.414669 | 3_1:+89534084 | Msa0385810:CDS |
| GAGAAAATGCGCTGATCAAA+AGG | 0.414930 | 3_1:-89533771 | None:intergenic |
| CTCAATCCGGTAAGATCAAA+TGG | 0.419046 | 3_1:+89534151 | Msa0385810:CDS |
| AAACCTATGGAGCAGCAATA+TGG | 0.432581 | 3_1:+89534064 | Msa0385810:CDS |
| CTGCCATATTGCTGCTCCAT+AGG | 0.433808 | 3_1:-89534067 | None:intergenic |
| CATCATACCAGCTGAATCTT+GGG | 0.436579 | 3_1:-89535549 | None:intergenic |
| GTTCCAATCCAAGAGCTTCC+AGG | 0.440106 | 3_1:+89536362 | Msa0385810:CDS |
| CGGTTATGGTCTCAAATATC+AGG | 0.443330 | 3_1:+89533399 | Msa0385810:CDS |
| TGAAACTTTCCATTCATTCA+GGG | 0.444744 | 3_1:+89533322 | Msa0385810:five_prime_UTR |
| AGTATTCTTTGGTGGCCAAC+TGG | 0.446267 | 3_1:+89534633 | Msa0385810:intron |
| AGGATCATTCCGTCATACTC+TGG | 0.448892 | 3_1:-89536679 | None:intergenic |
| ATTTGGATATTTCAGAGTGC+TGG | 0.449472 | 3_1:+89536992 | Msa0385810:intron |
| GGTAATCAACACTGCGGACA+TGG | 0.453337 | 3_1:-89535911 | None:intergenic |
| AGCAGAGTCATCTGTCCGTT+TGG | 0.453401 | 3_1:+89537155 | Msa0385810:CDS |
| AACAAGGTCCCAGATCTCAT+TGG | 0.464387 | 3_1:-89533742 | None:intergenic |
| TTTCAGTTGGTAACTCATCA+TGG | 0.473525 | 3_1:-89537054 | None:intergenic |
| GTTGTTGGTGGGTTTGATGT+TGG | 0.478991 | 3_1:+89537624 | Msa0385810:three_prime_UTR |
| ACAATGCAAGCTGTATCATC+TGG | 0.479446 | 3_1:+89533373 | Msa0385810:exon |
| ACAAGGTCCCAGATCTCATT+GGG | 0.486004 | 3_1:-89533741 | None:intergenic |
| GTGTGTGGCCTGGAAGCTCT+TGG | 0.488370 | 3_1:-89536370 | None:intergenic |
| TGGCCTGGAAGCTCTTGGAT+TGG | 0.492026 | 3_1:-89536365 | None:intergenic |
| CAAGTTATCTGGAGGGGCAT+GGG | 0.493455 | 3_1:+89535574 | Msa0385810:CDS |
| ATACACAACAAGATGACAAA+TGG | 0.494740 | 3_1:-89537542 | None:intergenic |
| TTCACATCCCAATGAGATCT+GGG | 0.498782 | 3_1:+89533734 | Msa0385810:CDS |
| TTGAACTATCCCTGAATGAA+TGG | 0.500065 | 3_1:-89533331 | None:intergenic |
| GTATGTTGTTCTTTCTAGGA+TGG | 0.511077 | 3_1:-89535932 | None:intergenic |
| TGAGTCAGGGATACACATTT+GGG | 0.511412 | 3_1:+89536322 | Msa0385810:CDS |
| CAATCCCTCACAGAAAAGTT+CGG | 0.512341 | 3_1:-89533709 | None:intergenic |
| TACCAAGCAGTATTCTTTGG+TGG | 0.512861 | 3_1:+89534625 | Msa0385810:intron |
| AGAGTATGACGGAATGATCC+TGG | 0.518026 | 3_1:+89536681 | Msa0385810:CDS |
| TAAGAATATGACCTTTCAGT+TGG | 0.519260 | 3_1:-89537067 | None:intergenic |
| CATCTTTGTCCTATGACGGA+AGG | 0.525463 | 3_1:+89537352 | Msa0385810:CDS |
| TATCTCAAGACTCCAGAGGC+AGG | 0.525960 | 3_1:-89537576 | None:intergenic |
| AACGGACAGATGACTCTGCT+TGG | 0.526905 | 3_1:-89537152 | None:intergenic |
| AACAGGATTAGATGTTACAT+TGG | 0.530626 | 3_1:+89537649 | Msa0385810:three_prime_UTR |
| ACATCTCTCGAAACTCAATC+CGG | 0.530946 | 3_1:+89534138 | Msa0385810:CDS |
| GACTCAACATAGTTGTTGGT+GGG | 0.532509 | 3_1:+89537613 | Msa0385810:three_prime_UTR |
| TTCTTTGGTGGCCAACTGGA+AGG | 0.536489 | 3_1:+89534637 | Msa0385810:CDS |
| ACAAGTTATCTGGAGGGGCA+TGG | 0.538022 | 3_1:+89535573 | Msa0385810:CDS |
| GTTGATAAAGGTGAAACCTA+TGG | 0.541143 | 3_1:+89534051 | Msa0385810:intron |
| TAGCCTTAAAGAAGAAAATG+AGG | 0.544050 | 3_1:+89533575 | Msa0385810:CDS |
| CATCCAAACTCCACAAGCAT+AGG | 0.548901 | 3_1:-89534692 | None:intergenic |
| AATTTATCATGCCTTCCAGT+TGG | 0.550107 | 3_1:-89534648 | None:intergenic |
| TTTCATACCATTAGAATAGA+CGG | 0.553561 | 3_1:-89533796 | None:intergenic |
| GTACAATCCCAAGATTCAGC+TGG | 0.553955 | 3_1:+89535542 | Msa0385810:CDS |
| AGGTACCAATGTGTGTGGCC+TGG | 0.555057 | 3_1:-89536380 | None:intergenic |
| TTTGCATCTTTGTCCTATGA+CGG | 0.559496 | 3_1:+89537348 | Msa0385810:CDS |
| GATATTTCAGAGTGCTGGAA+CGG | 0.562762 | 3_1:+89536997 | Msa0385810:intron |
| ACTTCATGAATTACATAACA+TGG | 0.563467 | 3_1:-89537798 | None:intergenic |
| ATAAACTACAAGACGAATTG+GGG | 0.564341 | 3_1:-89537861 | None:intergenic |
| GGATCATTCCGTCATACTCT+GGG | 0.565346 | 3_1:-89536678 | None:intergenic |
| AGACTCAACATAGTTGTTGG+TGG | 0.572934 | 3_1:+89537612 | Msa0385810:three_prime_UTR |
| CATGGAGTTCTCGTCAACCA+TGG | 0.573556 | 3_1:+89537322 | Msa0385810:CDS |
| TGAAGACTCAACATAGTTGT+TGG | 0.580201 | 3_1:+89537609 | Msa0385810:three_prime_UTR |
| CAAGCTGTATCATCTGGTAT+CGG | 0.580366 | 3_1:+89533379 | Msa0385810:CDS |
| GATGTAATTCTCTCTAATTG+AGG | 0.590145 | 3_1:-89534120 | None:intergenic |
| AAAGTTTCAGATACACTGTC+CGG | 0.590541 | 3_1:-89533308 | None:intergenic |
| ATCTTTGTCCTATGACGGAA+GGG | 0.591572 | 3_1:+89537353 | Msa0385810:CDS |
| CTATGGATGATTCTTGGTCA+AGG | 0.595963 | 3_1:-89537680 | None:intergenic |
| GTAATCAACACTGCGGACAT+GGG | 0.601319 | 3_1:-89535910 | None:intergenic |
| AGCTTCCAGGCCACACACAT+TGG | 0.602394 | 3_1:+89536375 | Msa0385810:CDS |
| TTTAACTCGCCATATAACTC+CGG | 0.603669 | 3_1:-89534093 | None:intergenic |
| TAAGCAGTGGATCAACCAAA+CGG | 0.612697 | 3_1:-89537170 | None:intergenic |
| TTGATGTTGAGATTCACACT+TGG | 0.621050 | 3_1:-89537913 | None:intergenic |
| GCTACAGAATTCATGTCATG+TGG | 0.621870 | 3_1:-89535599 | None:intergenic |
| ATGATGCACAAGTTATCTGG+AGG | 0.622737 | 3_1:+89535566 | Msa0385810:CDS |
| ATGATGAGTTACCAACTGAA+AGG | 0.627881 | 3_1:+89537056 | Msa0385810:CDS |
| CGGATTCGACTGTCAACTTG+TGG | 0.630246 | 3_1:+89537017 | Msa0385810:CDS |
| TTACAGCAGAGCATGAGTCA+GGG | 0.635696 | 3_1:+89536309 | Msa0385810:CDS |
| TCACTGTATGTATTAAGCAG+TGG | 0.636494 | 3_1:-89537183 | None:intergenic |
| TTCGACTGTCAACTTGTGGT+CGG | 0.636828 | 3_1:+89537021 | Msa0385810:CDS |
| TGTTTCCAAGAAAACTGCAC+AGG | 0.638150 | 3_1:+89534713 | Msa0385810:CDS |
| ATGATGAAAACCTATGCTTG+TGG | 0.640743 | 3_1:+89534682 | Msa0385810:CDS |
| TGATGCACAAGTTATCTGGA+GGG | 0.643534 | 3_1:+89535567 | Msa0385810:CDS |
| GATCAAAAGGACAAGAAACA+AGG | 0.643986 | 3_1:-89533758 | None:intergenic |
| AAGTGTAACCCAGAGTATGA+CGG | 0.647448 | 3_1:+89536670 | Msa0385810:CDS |
| TCATACAGTGGGAAAAGAAG+CGG | 0.653495 | 3_1:-89537944 | None:intergenic |
| GATGCACAAGTTATCTGGAG+GGG | 0.654578 | 3_1:+89535568 | Msa0385810:CDS |
| GGAGTCTTGAGATAAACAGA+TGG | 0.657500 | 3_1:+89537585 | Msa0385810:three_prime_UTR |
| GATCACACAAGTTTCCTCGC+CGG | 0.658007 | 3_1:+89533546 | Msa0385810:CDS |
| TAACTCATCATGGTTTATCG+AGG | 0.659409 | 3_1:-89537044 | None:intergenic |
| TGTTTATCTCAAGACTCCAG+AGG | 0.679790 | 3_1:-89537580 | None:intergenic |
| TAAGGCTAAGAGTTCCGGCG+AGG | 0.697714 | 3_1:-89533560 | None:intergenic |
| ATGACAGGTACCAATGTGTG+TGG | 0.738267 | 3_1:-89536385 | None:intergenic |
| TAGGATGGTAATCAACACTG+CGG | 0.802826 | 3_1:-89535917 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAATTGGATTAATTAA+TGG | - | chr3_1:89533456-89533475 | None:intergenic | 10.0% |
| !!! | AATACATTAATTTTTATTGA+TGG | + | chr3_1:89536172-89536191 | Msa0385810:intron | 10.0% |
| !!! | ATACATTAATTTTTATTGAT+GGG | + | chr3_1:89536173-89536192 | Msa0385810:intron | 10.0% |
| !! | TTTAATGAAATAAAAAAAGT+AGG | - | chr3_1:89536552-89536571 | None:intergenic | 10.0% |
| !! | AACAAAAAAAAAAAACTACT+TGG | - | chr3_1:89535814-89535833 | None:intergenic | 15.0% |
| !! | ATATTATAAAACCAAATAGA+AGG | - | chr3_1:89536009-89536028 | None:intergenic | 15.0% |
| !! | AAAGAAAATAAACTATTTGA+TGG | + | chr3_1:89536580-89536599 | Msa0385810:intron | 15.0% |
| !! | AAATTATATGTCATTGAATT+TGG | + | chr3_1:89536975-89536994 | Msa0385810:intron | 15.0% |
| !!! | TCAATTTTTATTCATTTTAC+AGG | + | chr3_1:89537294-89537313 | Msa0385810:intron | 15.0% |
| !!! | CAATTTTTATTCATTTTACA+GGG | + | chr3_1:89537295-89537314 | Msa0385810:intron | 15.0% |
| !! | TTATTTAGATCAGTTTATTT+GGG | - | chr3_1:89537434-89537453 | None:intergenic | 15.0% |
| !!! | ATTAGAAATCAACAATTTTT+TGG | + | chr3_1:89537703-89537722 | Msa0385810:three_prime_UTR | 15.0% |
| !! | TTAAAGGGAATGATAATAAT+TGG | - | chr3_1:89533468-89533487 | None:intergenic | 20.0% |
| !!! | TTTTTGCTTATAATAGTGAT+CGG | - | chr3_1:89534222-89534241 | None:intergenic | 20.0% |
| !! | CATTTAATAAATGATGTATG+TGG | - | chr3_1:89534295-89534314 | None:intergenic | 20.0% |
| !!! | TAAGCAAAATTTGACTTTTT+AGG | - | chr3_1:89534320-89534339 | None:intergenic | 20.0% |
| !! | ATAACAAACATATACTAAAG+AGG | - | chr3_1:89534562-89534581 | None:intergenic | 20.0% |
| !!! | GTTTGTTATTCACATTTATA+CGG | + | chr3_1:89534573-89534592 | Msa0385810:intron | 20.0% |
| !!! | CTGATATGTATTTTCTTTTT+TGG | - | chr3_1:89534844-89534863 | None:intergenic | 20.0% |
| !!! | TTTAAAATACAATAGTGAAG+AGG | + | chr3_1:89535037-89535056 | Msa0385810:intron | 20.0% |
| !! | TGTTCATAAATATCAATTAC+AGG | - | chr3_1:89535078-89535097 | None:intergenic | 20.0% |
| !!! | TCAAACAACATTTTAAGATT+CGG | - | chr3_1:89535123-89535142 | None:intergenic | 20.0% |
| !! | CAATGAGTAATTTACTTAAA+TGG | - | chr3_1:89535738-89535757 | None:intergenic | 20.0% |
| !! | AATTGGATTATTTAAATCAC+AGG | + | chr3_1:89535865-89535884 | Msa0385810:intron | 20.0% |
| !! | ATGAAATAAAAAAAGTAGGT+AGG | - | chr3_1:89536548-89536567 | None:intergenic | 20.0% |
| !! | ATATCACACACAAATAAATA+CGG | + | chr3_1:89536790-89536809 | Msa0385810:intron | 20.0% |
| !! | TATTTAGATCAGTTTATTTG+GGG | - | chr3_1:89537433-89537452 | None:intergenic | 20.0% |
| !! | GTTATTTAGATCAGTTTATT+TGG | - | chr3_1:89537435-89537454 | None:intergenic | 20.0% |
| !!! | AATTGTTGATTTCTAATCTA+TGG | - | chr3_1:89537700-89537719 | None:intergenic | 20.0% |
| !! | GTGATTTCTATCATATTATT+TGG | + | chr3_1:89537767-89537786 | Msa0385810:three_prime_UTR | 20.0% |
| !! | TTATAAAATGGTACATGAAA+TGG | + | chr3_1:89537880-89537899 | Msa0385810:three_prime_UTR | 20.0% |
| !! | TATAAAATGGTACATGAAAT+GGG | + | chr3_1:89537881-89537900 | Msa0385810:three_prime_UTR | 20.0% |
| ! | CAATCAAAACAGTGATTAAA+GGG | - | chr3_1:89533483-89533502 | None:intergenic | 25.0% |
| ! | ACAATCAAAACAGTGATTAA+AGG | - | chr3_1:89533484-89533503 | None:intergenic | 25.0% |
| ! | TATTACAGGTACATCTTATT+CGG | + | chr3_1:89533670-89533689 | Msa0385810:intron | 25.0% |
| ! | TTTCATACCATTAGAATAGA+CGG | - | chr3_1:89533799-89533818 | None:intergenic | 25.0% |
| !!! | TTACCTTTTGTTGTTGATAA+AGG | + | chr3_1:89534039-89534058 | Msa0385810:intron | 25.0% |
| ! | CATTCAATAAATGATGTATG+TGG | + | chr3_1:89534257-89534276 | Msa0385810:intron | 25.0% |
| !! | ATTTTGCTTATAATAGTGAC+CGG | + | chr3_1:89534330-89534349 | Msa0385810:intron | 25.0% |
| !!! | ATAACATACATGTGTTTTTG+TGG | - | chr3_1:89534790-89534809 | None:intergenic | 25.0% |
| !! | TTATTATTCAAGTTACCGTT+AGG | + | chr3_1:89534881-89534900 | Msa0385810:intron | 25.0% |
| !! | TAAAATGTTGTTTGAATGAG+AGG | + | chr3_1:89535128-89535147 | Msa0385810:intron | 25.0% |
| ! | ATGCAAATTAAACTCTTACA+GGG | - | chr3_1:89535299-89535318 | None:intergenic | 25.0% |
| ! | TATGCAAATTAAACTCTTAC+AGG | - | chr3_1:89535300-89535319 | None:intergenic | 25.0% |
| !!! | TGTAAGAGTTTAATTTGCAT+AGG | + | chr3_1:89535299-89535318 | Msa0385810:intron | 25.0% |
| !! | TCCTAAATTCATTCTTTTAC+TGG | + | chr3_1:89535676-89535695 | Msa0385810:intron | 25.0% |
| ! | ACCAGTAAAAGAATGAATTT+AGG | - | chr3_1:89535680-89535699 | None:intergenic | 25.0% |
| ! | GAGTAATTTACTTAAATGGA+AGG | - | chr3_1:89535734-89535753 | None:intergenic | 25.0% |
| !! | AAAAAAACTACTTGGTTTGA+GGG | - | chr3_1:89535806-89535825 | None:intergenic | 25.0% |
| !! | AAAAAAAACTACTTGGTTTG+AGG | - | chr3_1:89535807-89535826 | None:intergenic | 25.0% |
| !! | AAACCAAATAGAAGGTATAA+AGG | - | chr3_1:89536001-89536020 | None:intergenic | 25.0% |
| ! | ATTCACCCAATGATATAATA+TGG | + | chr3_1:89536068-89536087 | Msa0385810:intron | 25.0% |
| ! | CCAATCCATATTATATCATT+GGG | - | chr3_1:89536076-89536095 | None:intergenic | 25.0% |
| !!! | AATTAATGTATTTTGACGCT+AGG | - | chr3_1:89536164-89536183 | None:intergenic | 25.0% |
| !! | TGAATTGCTATGTTATTTAC+AGG | + | chr3_1:89536286-89536305 | Msa0385810:intron | 25.0% |
| ! | TAGGTTATTTGTGCATTAAA+AGG | - | chr3_1:89536529-89536548 | None:intergenic | 25.0% |
| !!! | TAAAAAAAAGTTTGTTGCAG+AGG | - | chr3_1:89536824-89536843 | None:intergenic | 25.0% |
| !!! | TCTGCAACAAACTTTTTTTT+AGG | + | chr3_1:89536823-89536842 | Msa0385810:intron | 25.0% |
| !!! | CTGCAACAAACTTTTTTTTA+GGG | + | chr3_1:89536824-89536843 | Msa0385810:intron | 25.0% |
| ! | GATTATGAAGACAGTATTTA+TGG | + | chr3_1:89537204-89537223 | Msa0385810:CDS | 25.0% |
| ! | AATCTTATTGCTTACATGTT+TGG | + | chr3_1:89537390-89537409 | Msa0385810:intron | 25.0% |
| ! | ATCTTATTGCTTACATGTTT+GGG | + | chr3_1:89537391-89537410 | Msa0385810:intron | 25.0% |
| ! | ATTTAGATCAGTTTATTTGG+GGG | - | chr3_1:89537432-89537451 | None:intergenic | 25.0% |
| !!! | TGATGTTGAACATCATTTTT+TGG | - | chr3_1:89537508-89537527 | None:intergenic | 25.0% |
| ! | ACTTCATGAATTACATAACA+TGG | - | chr3_1:89537801-89537820 | None:intergenic | 25.0% |
| ! | TGAAGTCATTATGTAATCTA+TGG | + | chr3_1:89537815-89537834 | Msa0385810:three_prime_UTR | 25.0% |
| ! | TATAAACTACAAGACGAATT+GGG | - | chr3_1:89537865-89537884 | None:intergenic | 25.0% |
| ! | TTATAAACTACAAGACGAAT+TGG | - | chr3_1:89537866-89537885 | None:intergenic | 25.0% |
| ! | TCGTCTTGTAGTTTATAAAA+TGG | + | chr3_1:89537868-89537887 | Msa0385810:three_prime_UTR | 25.0% |
| TGAAACTTTCCATTCATTCA+GGG | + | chr3_1:89533322-89533341 | Msa0385810:five_prime_UTR | 30.0% | |
| GAGTGGTAATAATGAGAATT+GGG | - | chr3_1:89533432-89533451 | None:intergenic | 30.0% | |
| AGAGTGGTAATAATGAGAAT+TGG | - | chr3_1:89533433-89533452 | None:intergenic | 30.0% | |
| TTGGATTAATTAATGGAGAG+TGG | - | chr3_1:89533449-89533468 | None:intergenic | 30.0% | |
| ! | TAGCCTTAAAGAAGAAAATG+AGG | + | chr3_1:89533575-89533594 | Msa0385810:CDS | 30.0% |
| ! | GTACCTCATTTTCTTCTTTA+AGG | - | chr3_1:89533581-89533600 | None:intergenic | 30.0% |
| AAATCCGATGAAAACTGAAT+TGG | - | chr3_1:89533619-89533638 | None:intergenic | 30.0% | |
| TCGTTACATCACATTATTAC+AGG | + | chr3_1:89533656-89533675 | Msa0385810:intron | 30.0% | |
| CAATAAGCACAAACTATCTA+TGG | - | chr3_1:89533846-89533865 | None:intergenic | 30.0% | |
| TCACCTTTATCAACAACAAA+AGG | - | chr3_1:89534045-89534064 | None:intergenic | 30.0% | |
| GATGTAATTCTCTCTAATTG+AGG | - | chr3_1:89534123-89534142 | None:intergenic | 30.0% | |
| AAACGAAGAAATCTGCAAAA+GGG | - | chr3_1:89534190-89534209 | None:intergenic | 30.0% | |
| TAAACGAAGAAATCTGCAAA+AGG | - | chr3_1:89534191-89534210 | None:intergenic | 30.0% | |
| ATTTCTCTATTTCACACTGT+TGG | + | chr3_1:89534484-89534503 | Msa0385810:intron | 30.0% | |
| TGGTTTATTATGACACCTAA+CGG | - | chr3_1:89534899-89534918 | None:intergenic | 30.0% | |
| !! | GTAGGAAAACATGTTGATTT+GGG | + | chr3_1:89534943-89534962 | Msa0385810:intron | 30.0% |
| CAAGAACAGATAATCTTTCA+TGG | - | chr3_1:89534978-89534997 | None:intergenic | 30.0% | |
| GGATTACATATTGTCCATAA+GGG | + | chr3_1:89535260-89535279 | Msa0385810:intron | 30.0% | |
| GAACAAAATTAGATCCCTTA+TGG | - | chr3_1:89535277-89535296 | None:intergenic | 30.0% | |
| GTATAAAACTTTGTGGTGTT+TGG | - | chr3_1:89535365-89535384 | None:intergenic | 30.0% | |
| AAACCTCGTATAAAACTTTG+TGG | - | chr3_1:89535372-89535391 | None:intergenic | 30.0% | |
| ! | GTTTTATACGAGGTTTCATT+AGG | + | chr3_1:89535376-89535395 | Msa0385810:intron | 30.0% |
| !!! | GTCACTGCTTTTTTAAAATC+TGG | + | chr3_1:89535450-89535469 | Msa0385810:intron | 30.0% |
| !!! | ACTGCTTTTTTAAAATCTGG+TGG | + | chr3_1:89535453-89535472 | Msa0385810:intron | 30.0% |
| !! | TGTTGTTTGTATGTTTTGAG+AGG | - | chr3_1:89535513-89535532 | None:intergenic | 30.0% |
| CATACAAACAACAAAAACCT+AGG | + | chr3_1:89535520-89535539 | Msa0385810:intron | 30.0% | |
| ! | TTTTGTTAATCAGTACCTGT+TGG | + | chr3_1:89535827-89535846 | Msa0385810:intron | 30.0% |
| GGAATTTCATGTCTACTAAT+TGG | + | chr3_1:89535848-89535867 | Msa0385810:intron | 30.0% | |
| ACAAGTATGTTGTTCTTTCT+AGG | - | chr3_1:89535939-89535958 | None:intergenic | 30.0% | |
| ATGCCTTTATACCTTCTATT+TGG | + | chr3_1:89535995-89536014 | Msa0385810:intron | 30.0% | |
| TATAATATCTGTGTCTGAGA+TGG | + | chr3_1:89536021-89536040 | Msa0385810:intron | 30.0% | |
| CCCAATGATATAATATGGAT+TGG | + | chr3_1:89536073-89536092 | Msa0385810:intron | 30.0% | |
| GCCAATCCATATTATATCAT+TGG | - | chr3_1:89536077-89536096 | None:intergenic | 30.0% | |
| !! | GCTTTAAAACTATACATGAC+AGG | - | chr3_1:89536403-89536422 | None:intergenic | 30.0% |
| AAGAGAAAAGAAAGTAGAAC+AGG | + | chr3_1:89536459-89536478 | Msa0385810:intron | 30.0% | |
| TATGTATTACTTGTATTGCC+AGG | + | chr3_1:89536635-89536654 | Msa0385810:intron | 30.0% | |
| ACACAAATAAATACGGACAA+GGG | + | chr3_1:89536797-89536816 | Msa0385810:intron | 30.0% | |
| TAAGAATATGACCTTTCAGT+TGG | - | chr3_1:89537070-89537089 | None:intergenic | 30.0% | |
| GACATAGTCTATAAAGATCA+TGG | - | chr3_1:89537271-89537290 | None:intergenic | 30.0% | |
| !! | AACCACTTTACTTTTCAAAC+AGG | + | chr3_1:89537452-89537471 | Msa0385810:intron | 30.0% |
| !!! | CATCATTTTTTGGAGATGAA+AGG | - | chr3_1:89537498-89537517 | None:intergenic | 30.0% |
| ATACACAACAAGATGACAAA+TGG | - | chr3_1:89537545-89537564 | None:intergenic | 30.0% | |
| AACAGGATTAGATGTTACAT+TGG | + | chr3_1:89537649-89537668 | Msa0385810:three_prime_UTR | 30.0% | |
| TCTAATCTATGGATGATTCT+TGG | - | chr3_1:89537689-89537708 | None:intergenic | 30.0% | |
| ATAAACTACAAGACGAATTG+GGG | - | chr3_1:89537864-89537883 | None:intergenic | 30.0% | |
| AAAGTTTCAGATACACTGTC+CGG | - | chr3_1:89533311-89533330 | None:intergenic | 35.0% | |
| CTGAAACTTTCCATTCATTC+AGG | + | chr3_1:89533321-89533340 | Msa0385810:five_prime_UTR | 35.0% | |
| TTGAACTATCCCTGAATGAA+TGG | - | chr3_1:89533334-89533353 | None:intergenic | 35.0% | |
| !!! | CTGTTTTGATTGTCTTGTCT+AGG | + | chr3_1:89533491-89533510 | Msa0385810:intron | 35.0% |
| !! | TTCTTTAAGGCTAAGAGTTC+CGG | - | chr3_1:89533568-89533587 | None:intergenic | 35.0% |
| ! | TGCTCCAATTCAGTTTTCAT+CGG | + | chr3_1:89533612-89533631 | Msa0385810:intron | 35.0% |
| GATCAAAAGGACAAGAAACA+AGG | - | chr3_1:89533761-89533780 | None:intergenic | 35.0% | |
| TTCTCAACCGTCTATTCTAA+TGG | + | chr3_1:89533789-89533808 | Msa0385810:CDS | 35.0% | |
| TTACTGTTTGAGAGAGCTTA+TGG | + | chr3_1:89533880-89533899 | Msa0385810:intron | 35.0% | |
| TACTGTTTGAGAGAGCTTAT+GGG | + | chr3_1:89533881-89533900 | Msa0385810:intron | 35.0% | |
| AAGCTATCATAGACAGCTTA+TGG | - | chr3_1:89533924-89533943 | None:intergenic | 35.0% | |
| ! | GTTGATAAAGGTGAAACCTA+TGG | + | chr3_1:89534051-89534070 | Msa0385810:intron | 35.0% |
| TTTAACTCGCCATATAACTC+CGG | - | chr3_1:89534096-89534115 | None:intergenic | 35.0% | |
| TACTCACCATTTGATCTTAC+CGG | - | chr3_1:89534160-89534179 | None:intergenic | 35.0% | |
| TGCTTATAATAGTGATCGGA+GGG | - | chr3_1:89534218-89534237 | None:intergenic | 35.0% | |
| TTGCTTATAATAGTGATCGG+AGG | - | chr3_1:89534219-89534238 | None:intergenic | 35.0% | |
| TACTACCAAGCAGTATTCTT+TGG | + | chr3_1:89534622-89534641 | Msa0385810:intron | 35.0% | |
| AATTTATCATGCCTTCCAGT+TGG | - | chr3_1:89534651-89534670 | None:intergenic | 35.0% | |
| ATGATGAAAACCTATGCTTG+TGG | + | chr3_1:89534682-89534701 | Msa0385810:CDS | 35.0% | |
| ! | GGTAGGAAAACATGTTGATT+TGG | + | chr3_1:89534942-89534961 | Msa0385810:intron | 35.0% |
| !! | AAAACATGTTGATTTGGGAG+AGG | + | chr3_1:89534948-89534967 | Msa0385810:intron | 35.0% |
| GAGTCTAGAGAGAAACTATT+TGG | - | chr3_1:89535011-89535030 | None:intergenic | 35.0% | |
| ATAGTTTCTCTCTAGACTCT+AGG | + | chr3_1:89535012-89535031 | Msa0385810:intron | 35.0% | |
| !!! | AGAGGCATTTTAGAAAACGA+AGG | + | chr3_1:89535146-89535165 | Msa0385810:intron | 35.0% |
| !! | GAGGCATTTTAGAAAACGAA+GGG | + | chr3_1:89535147-89535166 | Msa0385810:intron | 35.0% |
| ! | CTGTTGATGAGTGAAGATAT+TGG | + | chr3_1:89535170-89535189 | Msa0385810:intron | 35.0% |
| AGTTGTTTGGAGAAATCCAT+TGG | - | chr3_1:89535196-89535215 | None:intergenic | 35.0% | |
| GTGGCTTATATCATAAACTG+TGG | - | chr3_1:89535233-89535252 | None:intergenic | 35.0% | |
| ATGATATAAGCCACTGAGAA+CGG | + | chr3_1:89535239-89535258 | Msa0385810:intron | 35.0% | |
| AATATGTAATCCGTTCTCAG+TGG | - | chr3_1:89535252-89535271 | None:intergenic | 35.0% | |
| CGGATTACATATTGTCCATA+AGG | + | chr3_1:89535259-89535278 | Msa0385810:intron | 35.0% | |
| !! | TGTTTGGCTTGCATTAAGAA+TGG | - | chr3_1:89535349-89535368 | None:intergenic | 35.0% |
| !! | ACACCACAAAGTTTTATACG+AGG | + | chr3_1:89535366-89535385 | Msa0385810:intron | 35.0% |
| TTTCATTAGGACCTAAGATC+TGG | + | chr3_1:89535389-89535408 | Msa0385810:intron | 35.0% | |
| TTCATTAGGACCTAAGATCT+GGG | + | chr3_1:89535390-89535409 | Msa0385810:intron | 35.0% | |
| AGCAGTGACTATCAACATAA+AGG | - | chr3_1:89535439-89535458 | None:intergenic | 35.0% | |
| !!! | GTTTGTATGTTTTGAGAGGA+GGG | - | chr3_1:89535509-89535528 | None:intergenic | 35.0% |
| !!! | TGTTTGTATGTTTTGAGAGG+AGG | - | chr3_1:89535510-89535529 | None:intergenic | 35.0% |
| ! | TGAATCATCTCTCCAGTTTT+GGG | + | chr3_1:89535631-89535650 | Msa0385810:CDS | 35.0% |
| !! | ACTCATTGCATTTCAAGTTC+AGG | + | chr3_1:89535750-89535769 | Msa0385810:intron | 35.0% |
| AGTAGACATGAAATTCCAAC+AGG | - | chr3_1:89535845-89535864 | None:intergenic | 35.0% | |
| ! | GTATGTTGTTCTTTCTAGGA+TGG | - | chr3_1:89535935-89535954 | None:intergenic | 35.0% |
| !! | TTCCCATTTGTTGTTACGAT+CGG | + | chr3_1:89536503-89536522 | Msa0385810:intron | 35.0% |
| CACACAAATAAATACGGACA+AGG | + | chr3_1:89536796-89536815 | Msa0385810:intron | 35.0% | |
| TTTATCTCAATCCTGAGCAA+GGG | - | chr3_1:89536858-89536877 | None:intergenic | 35.0% | |
| ATTTGGATATTTCAGAGTGC+TGG | + | chr3_1:89536992-89537011 | Msa0385810:intron | 35.0% | |
| TAACTCATCATGGTTTATCG+AGG | - | chr3_1:89537047-89537066 | None:intergenic | 35.0% | |
| !! | TTTCAGTTGGTAACTCATCA+TGG | - | chr3_1:89537057-89537076 | None:intergenic | 35.0% |
| ATGATGAGTTACCAACTGAA+AGG | + | chr3_1:89537056-89537075 | Msa0385810:CDS | 35.0% | |
| TTCATCTTTGCTCGCATATT+TGG | + | chr3_1:89537126-89537145 | Msa0385810:intron | 35.0% | |
| TCACTGTATGTATTAAGCAG+TGG | - | chr3_1:89537186-89537205 | None:intergenic | 35.0% | |
| GTATTTATGGTAAGAGCTTC+TGG | + | chr3_1:89537217-89537236 | Msa0385810:intron | 35.0% | |
| ! | TTCATTTTACAGGGCTTACA+TGG | + | chr3_1:89537304-89537323 | Msa0385810:intron | 35.0% |
| GACAAAGATGCAAAAATCCA+TGG | - | chr3_1:89537342-89537361 | None:intergenic | 35.0% | |
| TTTGCATCTTTGTCCTATGA+CGG | + | chr3_1:89537348-89537367 | Msa0385810:CDS | 35.0% | |
| CACCTGTTTGAAAAGTAAAG+TGG | - | chr3_1:89537457-89537476 | None:intergenic | 35.0% | |
| !! | CACTTTACTTTTCAAACAGG+TGG | + | chr3_1:89537455-89537474 | Msa0385810:intron | 35.0% |
| TGAAGACTCAACATAGTTGT+TGG | + | chr3_1:89537609-89537628 | Msa0385810:three_prime_UTR | 35.0% | |
| TTGATGTTGAGATTCACACT+TGG | - | chr3_1:89537916-89537935 | None:intergenic | 35.0% | |
| !!! | GCCATTTTTGGGTTTAACTC+CGG | + | chr3_1:89533289-89533308 | Msa0385810:five_prime_UTR | 40.0% |
| TCCGGAGTTAAACCCAAAAA+TGG | - | chr3_1:89533293-89533312 | None:intergenic | 40.0% | |
| ACAATGCAAGCTGTATCATC+TGG | + | chr3_1:89533373-89533392 | Msa0385810:exon | 40.0% | |
| CAAGCTGTATCATCTGGTAT+CGG | + | chr3_1:89533379-89533398 | Msa0385810:CDS | 40.0% | |
| !! | GTATCATCTGGTATCGGTTA+TGG | + | chr3_1:89533385-89533404 | Msa0385810:CDS | 40.0% |
| CGGTTATGGTCTCAAATATC+AGG | + | chr3_1:89533399-89533418 | Msa0385810:CDS | 40.0% | |
| GGTACATCTTATTCGGCTTT+CGG | + | chr3_1:89533677-89533696 | Msa0385810:intron | 40.0% | |
| CAATCCCTCACAGAAAAGTT+CGG | - | chr3_1:89533712-89533731 | None:intergenic | 40.0% | |
| TTTCACATCCCAATGAGATC+TGG | + | chr3_1:89533733-89533752 | Msa0385810:CDS | 40.0% | |
| TTCACATCCCAATGAGATCT+GGG | + | chr3_1:89533734-89533753 | Msa0385810:CDS | 40.0% | |
| ! | GAGAAAATGCGCTGATCAAA+AGG | - | chr3_1:89533774-89533793 | None:intergenic | 40.0% |
| AAACCTATGGAGCAGCAATA+TGG | + | chr3_1:89534064-89534083 | Msa0385810:CDS | 40.0% | |
| ACATCTCTCGAAACTCAATC+CGG | + | chr3_1:89534138-89534157 | Msa0385810:CDS | 40.0% | |
| CTCAATCCGGTAAGATCAAA+TGG | + | chr3_1:89534151-89534170 | Msa0385810:CDS | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | + | chr3_1:89534333-89534352 | Msa0385810:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | + | chr3_1:89534334-89534353 | Msa0385810:intron | 40.0% | |
| ! | CACTGTTGGACTACTCTTTT+TGG | + | chr3_1:89534498-89534517 | Msa0385810:intron | 40.0% |
| TACCAAGCAGTATTCTTTGG+TGG | + | chr3_1:89534625-89534644 | Msa0385810:intron | 40.0% | |
| AAACCTATGCTTGTGGAGTT+TGG | + | chr3_1:89534689-89534708 | Msa0385810:CDS | 40.0% | |
| TGTTTCCAAGAAAACTGCAC+AGG | + | chr3_1:89534713-89534732 | Msa0385810:CDS | 40.0% | |
| AAATGAACCCTTACCACGAA+GGG | + | chr3_1:89534921-89534940 | Msa0385810:intron | 40.0% | |
| TGAGTGAAGATATTGGCCAA+TGG | + | chr3_1:89535177-89535196 | Msa0385810:intron | 40.0% | |
| ATCACAGGCTAACAGTTGTT+TGG | - | chr3_1:89535209-89535228 | None:intergenic | 40.0% | |
| ATCATAAACTGTGGCATCAC+AGG | - | chr3_1:89535224-89535243 | None:intergenic | 40.0% | |
| TCATTAGGACCTAAGATCTG+GGG | + | chr3_1:89535391-89535410 | Msa0385810:intron | 40.0% | |
| TGAATCTTGGGATTGTACCT+AGG | - | chr3_1:89535540-89535559 | None:intergenic | 40.0% | |
| CATCATACCAGCTGAATCTT+GGG | - | chr3_1:89535552-89535571 | None:intergenic | 40.0% | |
| GGTATGATGCACAAGTTATC+TGG | + | chr3_1:89535563-89535582 | Msa0385810:CDS | 40.0% | |
| ATGATGCACAAGTTATCTGG+AGG | + | chr3_1:89535566-89535585 | Msa0385810:CDS | 40.0% | |
| TGATGCACAAGTTATCTGGA+GGG | + | chr3_1:89535567-89535586 | Msa0385810:CDS | 40.0% | |
| GCTACAGAATTCATGTCATG+TGG | - | chr3_1:89535602-89535621 | None:intergenic | 40.0% | |
| ! | CTGAATCATCTCTCCAGTTT+TGG | + | chr3_1:89535630-89535649 | Msa0385810:CDS | 40.0% |
| !! | TGCATTTCAAGTTCAGGATC+TGG | + | chr3_1:89535756-89535775 | Msa0385810:intron | 40.0% |
| TAGGATGGTAATCAACACTG+CGG | - | chr3_1:89535920-89535939 | None:intergenic | 40.0% | |
| AGGCATGTATCAGTAGAATG+AGG | - | chr3_1:89535981-89536000 | None:intergenic | 40.0% | |
| CAACGTCTTTGTGTTCATGT+TGG | + | chr3_1:89536257-89536276 | Msa0385810:intron | 40.0% | |
| ATGAGTCAGGGATACACATT+TGG | + | chr3_1:89536321-89536340 | Msa0385810:CDS | 40.0% | |
| TGAGTCAGGGATACACATTT+GGG | + | chr3_1:89536322-89536341 | Msa0385810:CDS | 40.0% | |
| !! | AGCTCTTGGATTGGAACTTT+TGG | - | chr3_1:89536359-89536378 | None:intergenic | 40.0% |
| TTACTTGTATTGCCAGGACA+TGG | + | chr3_1:89536641-89536660 | Msa0385810:intron | 40.0% | |
| AAGTGTAACCCAGAGTATGA+CGG | + | chr3_1:89536670-89536689 | Msa0385810:CDS | 40.0% | |
| GTTTATCTCAATCCTGAGCA+AGG | - | chr3_1:89536859-89536878 | None:intergenic | 40.0% | |
| !! | GATATTTCAGAGTGCTGGAA+CGG | + | chr3_1:89536997-89537016 | Msa0385810:intron | 40.0% |
| TAAGCAGTGGATCAACCAAA+CGG | - | chr3_1:89537173-89537192 | None:intergenic | 40.0% | |
| ! | ATCTTTGTCCTATGACGGAA+GGG | + | chr3_1:89537353-89537372 | Msa0385810:CDS | 40.0% |
| ! | TTTTCTTACCCTTCCGTCAT+AGG | - | chr3_1:89537364-89537383 | None:intergenic | 40.0% |
| TGTTTATCTCAAGACTCCAG+AGG | - | chr3_1:89537583-89537602 | None:intergenic | 40.0% | |
| GGAGTCTTGAGATAAACAGA+TGG | + | chr3_1:89537585-89537604 | Msa0385810:three_prime_UTR | 40.0% | |
| AGACTCAACATAGTTGTTGG+TGG | + | chr3_1:89537612-89537631 | Msa0385810:three_prime_UTR | 40.0% | |
| GACTCAACATAGTTGTTGGT+GGG | + | chr3_1:89537613-89537632 | Msa0385810:three_prime_UTR | 40.0% | |
| ! | TGGGTTTGATGTTGGTTAAC+AGG | + | chr3_1:89537632-89537651 | Msa0385810:three_prime_UTR | 40.0% |
| CTATGGATGATTCTTGGTCA+AGG | - | chr3_1:89537683-89537702 | None:intergenic | 40.0% | |
| AACCCAAAAATGGCACCGTA+GGG | - | chr3_1:89533283-89533302 | None:intergenic | 45.0% | |
| AAACCCAAAAATGGCACCGT+AGG | - | chr3_1:89533284-89533303 | None:intergenic | 45.0% | |
| CTTATTCGGCTTTCGGCAAA+TGG | + | chr3_1:89533684-89533703 | Msa0385810:CDS | 45.0% | |
| ! | TGGAACCGAACTTTTCTGTG+AGG | + | chr3_1:89533704-89533723 | Msa0385810:CDS | 45.0% |
| ! | GGAACCGAACTTTTCTGTGA+GGG | + | chr3_1:89533705-89533724 | Msa0385810:CDS | 45.0% |
| ACAAGGTCCCAGATCTCATT+GGG | - | chr3_1:89533744-89533763 | None:intergenic | 45.0% | |
| AACAAGGTCCCAGATCTCAT+TGG | - | chr3_1:89533745-89533764 | None:intergenic | 45.0% | |
| AGCAGCAATATGGCAGATTC+CGG | + | chr3_1:89534074-89534093 | Msa0385810:CDS | 45.0% | |
| TGGCAGATTCCGGAGTTATA+TGG | + | chr3_1:89534084-89534103 | Msa0385810:CDS | 45.0% | |
| GTGCAAAACAATACTCCCTC+CGG | - | chr3_1:89534352-89534371 | None:intergenic | 45.0% | |
| TCAGGCAATGAGACAGTCTA+TGG | - | chr3_1:89534386-89534405 | None:intergenic | 45.0% | |
| ATAGACTGTCTCATTGCCTG+AGG | + | chr3_1:89534385-89534404 | Msa0385810:intron | 45.0% | |
| TGTCTCATTGCCTGAGGTTT+AGG | + | chr3_1:89534391-89534410 | Msa0385810:intron | 45.0% | |
| CTGACAACTTCCTAAACCTC+AGG | - | chr3_1:89534404-89534423 | None:intergenic | 45.0% | |
| GAAGTTGTCAGAAGACGTTG+AGG | + | chr3_1:89534413-89534432 | Msa0385810:intron | 45.0% | |
| ! | AGTATTCTTTGGTGGCCAAC+TGG | + | chr3_1:89534633-89534652 | Msa0385810:intron | 45.0% |
| CATCCAAACTCCACAAGCAT+AGG | - | chr3_1:89534695-89534714 | None:intergenic | 45.0% | |
| ! | TCGTACCTGTGCAGTTTTCT+TGG | - | chr3_1:89534721-89534740 | None:intergenic | 45.0% |
| CTGCACAGGTACGAAGTTTA+TGG | + | chr3_1:89534727-89534746 | Msa0385810:intron | 45.0% | |
| CGTGGTAAGGGTTCATTTGT+TGG | - | chr3_1:89534919-89534938 | None:intergenic | 45.0% | |
| CAAATGAACCCTTACCACGA+AGG | + | chr3_1:89534920-89534939 | Msa0385810:intron | 45.0% | |
| TTTCCTACCCTTCGTGGTAA+GGG | - | chr3_1:89534931-89534950 | None:intergenic | 45.0% | |
| ! | TTTTCCTACCCTTCGTGGTA+AGG | - | chr3_1:89534932-89534951 | None:intergenic | 45.0% |
| ! | ACATGTTTTCCTACCCTTCG+TGG | - | chr3_1:89534937-89534956 | None:intergenic | 45.0% |
| !!! | TGTATGTTTTGAGAGGAGGG+TGG | - | chr3_1:89535506-89535525 | None:intergenic | 45.0% |
| GTACAATCCCAAGATTCAGC+TGG | + | chr3_1:89535542-89535561 | Msa0385810:CDS | 45.0% | |
| GCATCATACCAGCTGAATCT+TGG | - | chr3_1:89535553-89535572 | None:intergenic | 45.0% | |
| GATGCACAAGTTATCTGGAG+GGG | + | chr3_1:89535568-89535587 | Msa0385810:CDS | 45.0% | |
| TCGTTCTCACATCCCAAAAC+TGG | - | chr3_1:89535646-89535665 | None:intergenic | 45.0% | |
| GTAATCAACACTGCGGACAT+GGG | - | chr3_1:89535913-89535932 | None:intergenic | 45.0% | |
| TTACAGCAGAGCATGAGTCA+GGG | + | chr3_1:89536309-89536328 | Msa0385810:CDS | 45.0% | |
| ATGACAGGTACCAATGTGTG+TGG | - | chr3_1:89536388-89536407 | None:intergenic | 45.0% | |
| GGCCGATCGTAACAACAAAT+GGG | - | chr3_1:89536508-89536527 | None:intergenic | 45.0% | |
| AGGCCGATCGTAACAACAAA+TGG | - | chr3_1:89536509-89536528 | None:intergenic | 45.0% | |
| ACACTTGACAATCCATGTCC+TGG | - | chr3_1:89536656-89536675 | None:intergenic | 45.0% | |
| GGATCATTCCGTCATACTCT+GGG | - | chr3_1:89536681-89536700 | None:intergenic | 45.0% | |
| AGGATCATTCCGTCATACTC+TGG | - | chr3_1:89536682-89536701 | None:intergenic | 45.0% | |
| ! | AGAGTATGACGGAATGATCC+TGG | + | chr3_1:89536681-89536700 | Msa0385810:CDS | 45.0% |
| TTCGACTGTCAACTTGTGGT+CGG | + | chr3_1:89537021-89537040 | Msa0385810:CDS | 45.0% | |
| ! | CATCTTTGTCCTATGACGGA+AGG | + | chr3_1:89537352-89537371 | Msa0385810:CDS | 45.0% |
| TGTCAGTAATTTCCTGCCTC+TGG | + | chr3_1:89537564-89537583 | Msa0385810:three_prime_UTR | 45.0% | |
| !! | GTTGTTGGTGGGTTTGATGT+TGG | + | chr3_1:89537624-89537643 | Msa0385810:three_prime_UTR | 45.0% |
| !!! | ATTTTATTTTTTTATTTGAA+AGG | + | chr3_1:89536425-89536444 | Msa0385810:intron | 5.0% |
| !!! | ACACCCTACGGTGCCATTTT+TGG | + | chr3_1:89533277-89533296 | Msa0385810:five_prime_UTR | 50.0% |
| !!! | CACCCTACGGTGCCATTTTT+GGG | + | chr3_1:89533278-89533297 | Msa0385810:five_prime_UTR | 50.0% |
| GATCACACAAGTTTCCTCGC+CGG | + | chr3_1:89533546-89533565 | Msa0385810:CDS | 50.0% | |
| CTGCCATATTGCTGCTCCAT+AGG | - | chr3_1:89534070-89534089 | None:intergenic | 50.0% | |
| GGCCACCAAAGAATACTGCT+TGG | - | chr3_1:89534630-89534649 | None:intergenic | 50.0% | |
| ! | TTCTTTGGTGGCCAACTGGA+AGG | + | chr3_1:89534637-89534656 | Msa0385810:CDS | 50.0% |
| ! | TAGGACCTAAGATCTGGGGT+TGG | + | chr3_1:89535395-89535414 | Msa0385810:intron | 50.0% |
| ! | AGGACCTAAGATCTGGGGTT+GGG | + | chr3_1:89535396-89535415 | Msa0385810:intron | 50.0% |
| AAGTCCCAACCCCAGATCTT+AGG | - | chr3_1:89535403-89535422 | None:intergenic | 50.0% | |
| ACAAGTTATCTGGAGGGGCA+TGG | + | chr3_1:89535573-89535592 | Msa0385810:CDS | 50.0% | |
| ! | CAAGTTATCTGGAGGGGCAT+GGG | + | chr3_1:89535574-89535593 | Msa0385810:CDS | 50.0% |
| AAGTTCAGGATCTGGTGTGC+TGG | + | chr3_1:89535764-89535783 | Msa0385810:intron | 50.0% | |
| GGTAATCAACACTGCGGACA+TGG | - | chr3_1:89535914-89535933 | None:intergenic | 50.0% | |
| GTTACAGCAGAGCATGAGTC+AGG | + | chr3_1:89536308-89536327 | Msa0385810:CDS | 50.0% | |
| GTTCCAATCCAAGAGCTTCC+AGG | + | chr3_1:89536362-89536381 | Msa0385810:CDS | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | - | chr3_1:89536711-89536730 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr3_1:89536710-89536729 | None:intergenic | 50.0% | |
| GTACATATGCACAGACGCAC+TGG | + | chr3_1:89536909-89536928 | Msa0385810:intron | 50.0% | |
| CGGATTCGACTGTCAACTTG+TGG | + | chr3_1:89537017-89537036 | Msa0385810:CDS | 50.0% | |
| AACGGACAGATGACTCTGCT+TGG | - | chr3_1:89537155-89537174 | None:intergenic | 50.0% | |
| AGCAGAGTCATCTGTCCGTT+TGG | + | chr3_1:89537155-89537174 | Msa0385810:CDS | 50.0% | |
| CATGGAGTTCTCGTCAACCA+TGG | + | chr3_1:89537322-89537341 | Msa0385810:CDS | 50.0% | |
| TATCTCAAGACTCCAGAGGC+AGG | - | chr3_1:89537579-89537598 | None:intergenic | 50.0% | |
| ATGGCACCGTAGGGTGTGTT+TGG | - | chr3_1:89533274-89533293 | None:intergenic | 55.0% | |
| TAAGGCTAAGAGTTCCGGCG+AGG | - | chr3_1:89533563-89533582 | None:intergenic | 55.0% | |
| GAACCCTTACCACGAAGGGT+AGG | + | chr3_1:89534925-89534944 | Msa0385810:intron | 55.0% | |
| AGGATCTGGTGTGCTGGAAG+AGG | + | chr3_1:89535770-89535789 | Msa0385810:intron | 55.0% | |
| GGATCTGGTGTGCTGGAAGA+GGG | + | chr3_1:89535771-89535790 | Msa0385810:intron | 55.0% | |
| TGGCCTGGAAGCTCTTGGAT+TGG | - | chr3_1:89536368-89536387 | None:intergenic | 55.0% | |
| AGCTTCCAGGCCACACACAT+TGG | + | chr3_1:89536375-89536394 | Msa0385810:CDS | 55.0% | |
| AGGTACCAATGTGTGTGGCC+TGG | - | chr3_1:89536383-89536402 | None:intergenic | 55.0% | |
| AGAGAGAGAGAGAGAGAGGG+AGG | - | chr3_1:89536708-89536727 | None:intergenic | 55.0% | |
| GGGTGAATACACCCTTGCTC+AGG | + | chr3_1:89536844-89536863 | Msa0385810:intron | 55.0% | |
| ! | TGCACAGACGCACTGGTGAA+AGG | + | chr3_1:89536916-89536935 | Msa0385810:intron | 55.0% |
| ! | ACAGACGCACTGGTGAAAGG+TGG | + | chr3_1:89536919-89536938 | Msa0385810:intron | 55.0% |
| ! | CAGACGCACTGGTGAAAGGT+GGG | + | chr3_1:89536920-89536939 | Msa0385810:intron | 55.0% |
| GTGTGTGGCCTGGAAGCTCT+TGG | - | chr3_1:89536373-89536392 | None:intergenic | 60.0% | |
| AGAGAGAGAGAGGGAGGACC+AGG | - | chr3_1:89536702-89536721 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 89533270 | 89537957 | 89533270 | ID=Msa0385810;Name=Msa0385810 |
| chr3_1 | mRNA | 89533270 | 89537957 | 89533270 | ID=Msa0385810-mRNA-1;Parent=Msa0385810;Name=Msa0385810-mRNA-1;_AED=0.26;_eAED=0.26;_QI=106|1|1|1|1|1|13|442|350 |
| chr3_1 | exon | 89533270 | 89533420 | 89533270 | ID=Msa0385810-mRNA-1:exon:24398;Parent=Msa0385810-mRNA-1 |
| chr3_1 | exon | 89533513 | 89533596 | 89533513 | ID=Msa0385810-mRNA-1:exon:24399;Parent=Msa0385810-mRNA-1 |
| chr3_1 | exon | 89533678 | 89533810 | 89533678 | ID=Msa0385810-mRNA-1:exon:24400;Parent=Msa0385810-mRNA-1 |
| chr3_1 | exon | 89534061 | 89534172 | 89534061 | ID=Msa0385810-mRNA-1:exon:24401;Parent=Msa0385810-mRNA-1 |
| chr3_1 | exon | 89534635 | 89534734 | 89534635 | ID=Msa0385810-mRNA-1:exon:24402;Parent=Msa0385810-mRNA-1 |
| chr3_1 | exon | 89535542 | 89535669 | 89535542 | ID=Msa0385810-mRNA-1:exon:24403;Parent=Msa0385810-mRNA-1 |
| chr3_1 | exon | 89535887 | 89535956 | 89535887 | ID=Msa0385810-mRNA-1:exon:24404;Parent=Msa0385810-mRNA-1 |
| chr3_1 | exon | 89536308 | 89536396 | 89536308 | ID=Msa0385810-mRNA-1:exon:24405;Parent=Msa0385810-mRNA-1 |
| chr3_1 | exon | 89536657 | 89536702 | 89536657 | ID=Msa0385810-mRNA-1:exon:24406;Parent=Msa0385810-mRNA-1 |
| chr3_1 | exon | 89537007 | 89537077 | 89537007 | ID=Msa0385810-mRNA-1:exon:24407;Parent=Msa0385810-mRNA-1 |
| chr3_1 | exon | 89537152 | 89537225 | 89537152 | ID=Msa0385810-mRNA-1:exon:24408;Parent=Msa0385810-mRNA-1 |
| chr3_1 | exon | 89537316 | 89537374 | 89537316 | ID=Msa0385810-mRNA-1:exon:24409;Parent=Msa0385810-mRNA-1 |
| chr3_1 | exon | 89537474 | 89537957 | 89537474 | ID=Msa0385810-mRNA-1:exon:24410;Parent=Msa0385810-mRNA-1 |
| chr3_1 | five_prime_UTR | 89533270 | 89533375 | 89533270 | ID=Msa0385810-mRNA-1:five_prime_utr;Parent=Msa0385810-mRNA-1 |
| chr3_1 | CDS | 89533376 | 89533420 | 89533376 | ID=Msa0385810-mRNA-1:cds;Parent=Msa0385810-mRNA-1 |
| chr3_1 | CDS | 89533513 | 89533596 | 89533513 | ID=Msa0385810-mRNA-1:cds;Parent=Msa0385810-mRNA-1 |
| chr3_1 | CDS | 89533678 | 89533810 | 89533678 | ID=Msa0385810-mRNA-1:cds;Parent=Msa0385810-mRNA-1 |
| chr3_1 | CDS | 89534061 | 89534172 | 89534061 | ID=Msa0385810-mRNA-1:cds;Parent=Msa0385810-mRNA-1 |
| chr3_1 | CDS | 89534635 | 89534734 | 89534635 | ID=Msa0385810-mRNA-1:cds;Parent=Msa0385810-mRNA-1 |
| chr3_1 | CDS | 89535542 | 89535669 | 89535542 | ID=Msa0385810-mRNA-1:cds;Parent=Msa0385810-mRNA-1 |
| chr3_1 | CDS | 89535887 | 89535956 | 89535887 | ID=Msa0385810-mRNA-1:cds;Parent=Msa0385810-mRNA-1 |
| chr3_1 | CDS | 89536308 | 89536396 | 89536308 | ID=Msa0385810-mRNA-1:cds;Parent=Msa0385810-mRNA-1 |
| chr3_1 | CDS | 89536657 | 89536702 | 89536657 | ID=Msa0385810-mRNA-1:cds;Parent=Msa0385810-mRNA-1 |
| chr3_1 | CDS | 89537007 | 89537077 | 89537007 | ID=Msa0385810-mRNA-1:cds;Parent=Msa0385810-mRNA-1 |
| chr3_1 | CDS | 89537152 | 89537225 | 89537152 | ID=Msa0385810-mRNA-1:cds;Parent=Msa0385810-mRNA-1 |
| chr3_1 | CDS | 89537316 | 89537374 | 89537316 | ID=Msa0385810-mRNA-1:cds;Parent=Msa0385810-mRNA-1 |
| chr3_1 | CDS | 89537474 | 89537515 | 89537474 | ID=Msa0385810-mRNA-1:cds;Parent=Msa0385810-mRNA-1 |
| chr3_1 | three_prime_UTR | 89537516 | 89537957 | 89537516 | ID=Msa0385810-mRNA-1:three_prime_utr;Parent=Msa0385810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
