Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523320 | XP_013462258.1 | 94.857 | 350 | 4 | 1 | 1 | 336 | 1 | 350 | 0.0 | 678 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523320 | sp|Q6NPN9|DWA2_ARATH | 67.143 | 350 | 101 | 1 | 1 | 336 | 1 | 350 | 2.93e-176 | 495 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523320 | A0A072V4M1 | 94.857 | 350 | 4 | 1 | 1 | 336 | 1 | 350 | 0.0 | 678 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0186430 | Msa0523320 | 0.871689 | 5.643356e-67 | -8.615850e-47 |
| Msa0385810 | Msa0523320 | 0.901770 | 1.914300e-78 | -8.615850e-47 |
| Msa0404260 | Msa0523320 | 0.904097 | 1.750643e-79 | -8.615850e-47 |
| Msa0523270 | Msa0523320 | 0.905334 | 4.791499e-80 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523320 | MtrunA17_Chr3g0143791 | 94.857 | 350 | 4 | 1 | 1 | 336 | 1 | 350 | 0.0 | 678 |
| Msa0523320 | MtrunA17_Chr4g0036951 | 26.131 | 199 | 139 | 5 | 127 | 321 | 183 | 377 | 4.75e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523320 | AT1G20540.1 | 71.143 | 350 | 86 | 2 | 1 | 335 | 1 | 350 | 0.0 | 531 |
| Msa0523320 | AT1G76260.1 | 67.143 | 350 | 101 | 1 | 1 | 336 | 1 | 350 | 2.98e-177 | 495 |
| Msa0523320 | AT1G29260.1 | 22.097 | 267 | 187 | 7 | 9 | 266 | 10 | 264 | 4.46e-12 | 66.6 |
| Msa0523320 | AT2G16780.1 | 22.066 | 213 | 158 | 5 | 114 | 321 | 176 | 385 | 2.86e-11 | 64.7 |
Find 115 sgRNAs with CRISPR-Local
Find 306 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAATCATCTCTCCAGTTT+TGG | 0.158181 | 3_4:+76641046 | Msa0523320:CDS |
| GTGATTTCTATCATATTATT+TGG | 0.172174 | 3_4:+76643186 | Msa0523320:three_prime_UTR |
| GATTATGAAGACAGTATTTA+TGG | 0.189984 | 3_4:+76642623 | Msa0523320:CDS |
| AATTGTTGATTTCTAATCTA+TGG | 0.193483 | 3_4:-76643116 | None:intergenic |
| ACAAGTATGTTGTTCTTTCT+AGG | 0.205190 | 3_4:-76641350 | None:intergenic |
| TCGTCTTGTAGTTTATAAAA+TGG | 0.213244 | 3_4:+76643287 | Msa0523320:three_prime_UTR |
| CTGAAACTTTCCATTCATTC+AGG | 0.222081 | 3_4:+76638636 | Msa0523320:five_prime_UTR |
| AGCTCTTGGATTGGAACTTT+TGG | 0.235539 | 3_4:-76641770 | None:intergenic |
| TTATAAAATGGTACATGAAA+TGG | 0.297176 | 3_4:+76643299 | Msa0523320:three_prime_UTR |
| TTCTTTAAGGCTAAGAGTTC+CGG | 0.300672 | 3_4:-76638880 | None:intergenic |
| TACTACCAAGCAGTATTCTT+TGG | 0.302862 | 3_4:+76640038 | Msa0523320:intron |
| TCTAATCTATGGATGATTCT+TGG | 0.307783 | 3_4:-76643105 | None:intergenic |
| TATTACAGGTACATCTTATT+CGG | 0.313591 | 3_4:+76638985 | Msa0523320:intron |
| TGAAGTCATTATGTAATCTA+TGG | 0.325468 | 3_4:+76643234 | Msa0523320:three_prime_UTR |
| TACTCACCATTTGATCTTAC+CGG | 0.335068 | 3_4:-76639572 | None:intergenic |
| TTATAAACTACAAGACGAAT+TGG | 0.348330 | 3_4:-76643282 | None:intergenic |
| TGGGTTTGATGTTGGTTAAC+AGG | 0.348792 | 3_4:+76643051 | Msa0523320:three_prime_UTR |
| AAACCTATGCTTGTGGAGTT+TGG | 0.356150 | 3_4:+76640105 | Msa0523320:CDS |
| GGTATGATGCACAAGTTATC+TGG | 0.357598 | 3_4:+76640979 | Msa0523320:CDS |
| CTTATTCGGCTTTCGGCAAA+TGG | 0.360330 | 3_4:+76638999 | Msa0523320:CDS |
| TATAAACTACAAGACGAATT+GGG | 0.365585 | 3_4:-76643281 | None:intergenic |
| ATGAGTCAGGGATACACATT+TGG | 0.372896 | 3_4:+76641735 | Msa0523320:CDS |
| GGTACATCTTATTCGGCTTT+CGG | 0.373404 | 3_4:+76638992 | Msa0523320:intron |
| TCGTTCTCACATCCCAAAAC+TGG | 0.382275 | 3_4:-76641059 | None:intergenic |
| GTATCATCTGGTATCGGTTA+TGG | 0.388037 | 3_4:+76638700 | Msa0523320:CDS |
| GTTACAGCAGAGCATGAGTC+AGG | 0.388558 | 3_4:+76641722 | Msa0523320:CDS |
| TTTCACATCCCAATGAGATC+TGG | 0.396774 | 3_4:+76639048 | Msa0523320:CDS |
| GCATCATACCAGCTGAATCT+TGG | 0.397662 | 3_4:-76640966 | None:intergenic |
| TATAAAATGGTACATGAAAT+GGG | 0.399439 | 3_4:+76643300 | Msa0523320:three_prime_UTR |
| ATGGCACCGTAGGGTGTGTT+TGG | 0.407591 | 3_4:-76638586 | None:intergenic |
| TGTCAGTAATTTCCTGCCTC+TGG | 0.411250 | 3_4:+76642983 | Msa0523320:three_prime_UTR |
| AGCAGCAATATGGCAGATTC+CGG | 0.413631 | 3_4:+76639489 | Msa0523320:CDS |
| TGGCAGATTCCGGAGTTATA+TGG | 0.414669 | 3_4:+76639499 | Msa0523320:CDS |
| CTCAATCCGGTAAGATCAAA+TGG | 0.419046 | 3_4:+76639566 | Msa0523320:CDS |
| AAACCTATGGAGCAGCAATA+TGG | 0.432581 | 3_4:+76639479 | Msa0523320:CDS |
| CTGCCATATTGCTGCTCCAT+AGG | 0.433808 | 3_4:-76639482 | None:intergenic |
| CATCATACCAGCTGAATCTT+GGG | 0.436579 | 3_4:-76640965 | None:intergenic |
| GTTCCAATCCAAGAGCTTCC+AGG | 0.440106 | 3_4:+76641776 | Msa0523320:CDS |
| CGGTTATGGTCTCAAATATC+AGG | 0.443330 | 3_4:+76638714 | Msa0523320:CDS |
| TGAAACTTTCCATTCATTCA+GGG | 0.444744 | 3_4:+76638637 | Msa0523320:five_prime_UTR |
| AGTATTCTTTGGTGGCCAAC+TGG | 0.446267 | 3_4:+76640049 | Msa0523320:intron |
| AGGATCATTCCGTCATACTC+TGG | 0.448892 | 3_4:-76642093 | None:intergenic |
| ATTTGGATATTTCAGAGTGC+TGG | 0.449472 | 3_4:+76642411 | Msa0523320:intron |
| GGTAATCAACACTGCGGACA+TGG | 0.453337 | 3_4:-76641325 | None:intergenic |
| AGCAGAGTCATCTGTCCGTT+TGG | 0.453401 | 3_4:+76642574 | Msa0523320:CDS |
| AACAAGGTCCCAGATCTCAT+TGG | 0.464387 | 3_4:-76639057 | None:intergenic |
| TTTCAGTTGGTAACTCATCA+TGG | 0.473525 | 3_4:-76642473 | None:intergenic |
| GTTGTTGGTGGGTTTGATGT+TGG | 0.478991 | 3_4:+76643043 | Msa0523320:three_prime_UTR |
| ACAATGCAAGCTGTATCATC+TGG | 0.479446 | 3_4:+76638688 | Msa0523320:exon |
| ACAAGGTCCCAGATCTCATT+GGG | 0.486004 | 3_4:-76639056 | None:intergenic |
| GTGTGTGGCCTGGAAGCTCT+TGG | 0.488370 | 3_4:-76641784 | None:intergenic |
| TGGCCTGGAAGCTCTTGGAT+TGG | 0.492026 | 3_4:-76641779 | None:intergenic |
| CAAGTTATCTGGAGGGGCAT+GGG | 0.493455 | 3_4:+76640990 | Msa0523320:CDS |
| ATACACAACAAGATGACAAA+TGG | 0.494740 | 3_4:-76642961 | None:intergenic |
| TTCACATCCCAATGAGATCT+GGG | 0.498782 | 3_4:+76639049 | Msa0523320:CDS |
| TTGAACTATCCCTGAATGAA+TGG | 0.500065 | 3_4:-76638646 | None:intergenic |
| GTATGTTGTTCTTTCTAGGA+TGG | 0.511077 | 3_4:-76641346 | None:intergenic |
| TGAGTCAGGGATACACATTT+GGG | 0.511412 | 3_4:+76641736 | Msa0523320:CDS |
| CAATCCCTCACAGAAAAGTT+CGG | 0.512341 | 3_4:-76639024 | None:intergenic |
| TACCAAGCAGTATTCTTTGG+TGG | 0.512861 | 3_4:+76640041 | Msa0523320:intron |
| AGAGTATGACGGAATGATCC+TGG | 0.518026 | 3_4:+76642095 | Msa0523320:CDS |
| TAAGAATATGACCTTTCAGT+TGG | 0.519260 | 3_4:-76642486 | None:intergenic |
| CATCTTTGTCCTATGACGGA+AGG | 0.525463 | 3_4:+76642771 | Msa0523320:CDS |
| TATCTCAAGACTCCAGAGGC+AGG | 0.525960 | 3_4:-76642995 | None:intergenic |
| AACGGACAGATGACTCTGCT+TGG | 0.526905 | 3_4:-76642571 | None:intergenic |
| AACAGGATTAGATGTTACAT+TGG | 0.530626 | 3_4:+76643068 | Msa0523320:three_prime_UTR |
| ACATCTCTCGAAACTCAATC+CGG | 0.530946 | 3_4:+76639553 | Msa0523320:CDS |
| GACTCAACATAGTTGTTGGT+GGG | 0.532509 | 3_4:+76643032 | Msa0523320:three_prime_UTR |
| TTCTTTGGTGGCCAACTGGA+AGG | 0.536489 | 3_4:+76640053 | Msa0523320:CDS |
| ACAAGTTATCTGGAGGGGCA+TGG | 0.538022 | 3_4:+76640989 | Msa0523320:CDS |
| GTTGATAAAGGTGAAACCTA+TGG | 0.541143 | 3_4:+76639466 | Msa0523320:intron |
| TAGCCTTAAAGAAGAAAATG+AGG | 0.544050 | 3_4:+76638890 | Msa0523320:CDS |
| CATCCAAACTCCACAAGCAT+AGG | 0.548901 | 3_4:-76640108 | None:intergenic |
| AATTTATCATGCCTTCCAGT+TGG | 0.550107 | 3_4:-76640064 | None:intergenic |
| GTACAATCCCAAGATTCAGC+TGG | 0.553955 | 3_4:+76640958 | Msa0523320:CDS |
| AGGTACCAATGTGTGTGGCC+TGG | 0.555057 | 3_4:-76641794 | None:intergenic |
| TTTGCATCTTTGTCCTATGA+CGG | 0.559496 | 3_4:+76642767 | Msa0523320:CDS |
| GATATTTCAGAGTGCTGGAA+CGG | 0.562762 | 3_4:+76642416 | Msa0523320:intron |
| ACTTCATGAATTACATAACA+TGG | 0.563467 | 3_4:-76643217 | None:intergenic |
| ATAAACTACAAGACGAATTG+GGG | 0.564341 | 3_4:-76643280 | None:intergenic |
| GGATCATTCCGTCATACTCT+GGG | 0.565346 | 3_4:-76642092 | None:intergenic |
| AGACTCAACATAGTTGTTGG+TGG | 0.572934 | 3_4:+76643031 | Msa0523320:three_prime_UTR |
| CATGGAGTTCTCGTCAACCA+TGG | 0.573556 | 3_4:+76642741 | Msa0523320:CDS |
| TGAAGACTCAACATAGTTGT+TGG | 0.580201 | 3_4:+76643028 | Msa0523320:three_prime_UTR |
| CAAGCTGTATCATCTGGTAT+CGG | 0.580366 | 3_4:+76638694 | Msa0523320:CDS |
| GATGTAATTCTCTCTAATTG+AGG | 0.590145 | 3_4:-76639535 | None:intergenic |
| AAAGTTTCAGATACACTGTC+CGG | 0.590541 | 3_4:-76638623 | None:intergenic |
| ATCTTTGTCCTATGACGGAA+GGG | 0.591572 | 3_4:+76642772 | Msa0523320:CDS |
| CTATGGATGATTCTTGGTCA+AGG | 0.595963 | 3_4:-76643099 | None:intergenic |
| GTAATCAACACTGCGGACAT+GGG | 0.601319 | 3_4:-76641324 | None:intergenic |
| AGCTTCCAGGCCACACACAT+TGG | 0.602394 | 3_4:+76641789 | Msa0523320:CDS |
| TTTAACTCGCCATATAACTC+CGG | 0.603669 | 3_4:-76639508 | None:intergenic |
| TAAGCAGTGGATCAACCAAA+CGG | 0.612697 | 3_4:-76642589 | None:intergenic |
| TTGATGTTGAGATTCACACT+TGG | 0.621050 | 3_4:-76643332 | None:intergenic |
| GCTACAGAATTCATGTCATG+TGG | 0.621870 | 3_4:-76641015 | None:intergenic |
| ATGATGCACAAGTTATCTGG+AGG | 0.622737 | 3_4:+76640982 | Msa0523320:CDS |
| ATGATGAGTTACCAACTGAA+AGG | 0.627881 | 3_4:+76642475 | Msa0523320:CDS |
| CGGATTCGACTGTCAACTTG+TGG | 0.630246 | 3_4:+76642436 | Msa0523320:CDS |
| TTACAGCAGAGCATGAGTCA+GGG | 0.635696 | 3_4:+76641723 | Msa0523320:CDS |
| TCACTGTATGTATTAAGCAG+TGG | 0.636494 | 3_4:-76642602 | None:intergenic |
| TTCGACTGTCAACTTGTGGT+CGG | 0.636828 | 3_4:+76642440 | Msa0523320:CDS |
| TGTTTCCAAGAAAACTGCAC+AGG | 0.638150 | 3_4:+76640129 | Msa0523320:CDS |
| ATGATGAAAACCTATGCTTG+TGG | 0.640743 | 3_4:+76640098 | Msa0523320:CDS |
| TGATGCACAAGTTATCTGGA+GGG | 0.643534 | 3_4:+76640983 | Msa0523320:CDS |
| GATCAAAAGGACAAGAAACA+AGG | 0.643986 | 3_4:-76639073 | None:intergenic |
| AAGTGTAACCCAGAGTATGA+CGG | 0.647448 | 3_4:+76642084 | Msa0523320:CDS |
| TCATACAGTGGGAAAAGAAG+CGG | 0.653495 | 3_4:-76643363 | None:intergenic |
| GATGCACAAGTTATCTGGAG+GGG | 0.654578 | 3_4:+76640984 | Msa0523320:CDS |
| GGAGTCTTGAGATAAACAGA+TGG | 0.657500 | 3_4:+76643004 | Msa0523320:three_prime_UTR |
| GATCACACAAGTTTCCTCGC+CGG | 0.658007 | 3_4:+76638861 | Msa0523320:CDS |
| TAACTCATCATGGTTTATCG+AGG | 0.659409 | 3_4:-76642463 | None:intergenic |
| TGTTTATCTCAAGACTCCAG+AGG | 0.679790 | 3_4:-76642999 | None:intergenic |
| TAAGGCTAAGAGTTCCGGCG+AGG | 0.697714 | 3_4:-76638875 | None:intergenic |
| ATGACAGGTACCAATGTGTG+TGG | 0.738267 | 3_4:-76641799 | None:intergenic |
| TAGGATGGTAATCAACACTG+CGG | 0.802826 | 3_4:-76641331 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAATTGGATTAATTAA+TGG | - | chr3_4:76638771-76638790 | None:intergenic | 10.0% |
| !!! | AATACATTAATTTTTATTGA+TGG | + | chr3_4:76641586-76641605 | Msa0523320:intron | 10.0% |
| !!! | ATACATTAATTTTTATTGAT+GGG | + | chr3_4:76641587-76641606 | Msa0523320:intron | 10.0% |
| !! | TTTAATGAAATAAAAAAAGT+AGG | - | chr3_4:76641966-76641985 | None:intergenic | 10.0% |
| !! | TTAACAAAAAAAAAACTACT+TGG | - | chr3_4:76641230-76641249 | None:intergenic | 15.0% |
| !! | ATATTATAAAACCAAATAGA+AGG | - | chr3_4:76641423-76641442 | None:intergenic | 15.0% |
| !! | AAAGAAAATAAACTATTTGA+TGG | + | chr3_4:76641994-76642013 | Msa0523320:intron | 15.0% |
| !! | AAATTATATGTCATTGAATT+TGG | + | chr3_4:76642394-76642413 | Msa0523320:intron | 15.0% |
| !!! | TCAATTTTTATTCATTTTAC+AGG | + | chr3_4:76642713-76642732 | Msa0523320:intron | 15.0% |
| !!! | CAATTTTTATTCATTTTACA+GGG | + | chr3_4:76642714-76642733 | Msa0523320:intron | 15.0% |
| !! | TTATTTAGATCAGTTTATTT+GGG | - | chr3_4:76642853-76642872 | None:intergenic | 15.0% |
| !!! | ATTAGAAATCAACAATTTTT+TGG | + | chr3_4:76643122-76643141 | Msa0523320:three_prime_UTR | 15.0% |
| !! | TTAAAGGGAATGATAATAAT+TGG | - | chr3_4:76638783-76638802 | None:intergenic | 20.0% |
| !!! | TTTTTGCTTATAATAGTGAT+CGG | - | chr3_4:76639637-76639656 | None:intergenic | 20.0% |
| !! | CATTTAATAAATGATGTATG+TGG | - | chr3_4:76639710-76639729 | None:intergenic | 20.0% |
| !!! | AAGCAAAATTTGACTTTTTA+AGG | - | chr3_4:76639735-76639754 | None:intergenic | 20.0% |
| !! | ATAACAAACATATACTAAAG+AGG | - | chr3_4:76639978-76639997 | None:intergenic | 20.0% |
| !!! | GTTTGTTATTCACATTTATA+CGG | + | chr3_4:76639989-76640008 | Msa0523320:intron | 20.0% |
| !!! | CTGATATGTATTTTCTTTTT+TGG | - | chr3_4:76640260-76640279 | None:intergenic | 20.0% |
| !!! | TTTAAAATACAATAGTGAAG+AGG | + | chr3_4:76640453-76640472 | Msa0523320:intron | 20.0% |
| !! | TGTTCATAAATATCAATTAC+AGG | - | chr3_4:76640494-76640513 | None:intergenic | 20.0% |
| !!! | TCAAACAACATTTTAAGATT+CGG | - | chr3_4:76640539-76640558 | None:intergenic | 20.0% |
| !! | CAATGAGTAATTTACTTAAA+TGG | - | chr3_4:76641154-76641173 | None:intergenic | 20.0% |
| !! | AATTGGATTATTTAAATCAC+AGG | + | chr3_4:76641279-76641298 | Msa0523320:intron | 20.0% |
| !! | ATGAAATAAAAAAAGTAGGT+AGG | - | chr3_4:76641962-76641981 | None:intergenic | 20.0% |
| !! | ATATCACACACAAATAAATA+CGG | + | chr3_4:76642209-76642228 | Msa0523320:intron | 20.0% |
| !! | TATTTAGATCAGTTTATTTG+GGG | - | chr3_4:76642852-76642871 | None:intergenic | 20.0% |
| !! | GTTATTTAGATCAGTTTATT+TGG | - | chr3_4:76642854-76642873 | None:intergenic | 20.0% |
| !!! | AATTGTTGATTTCTAATCTA+TGG | - | chr3_4:76643119-76643138 | None:intergenic | 20.0% |
| !! | GTGATTTCTATCATATTATT+TGG | + | chr3_4:76643186-76643205 | Msa0523320:three_prime_UTR | 20.0% |
| !! | TTATAAAATGGTACATGAAA+TGG | + | chr3_4:76643299-76643318 | Msa0523320:three_prime_UTR | 20.0% |
| !! | TATAAAATGGTACATGAAAT+GGG | + | chr3_4:76643300-76643319 | Msa0523320:three_prime_UTR | 20.0% |
| ! | CAATCAAAACAGTGATTAAA+GGG | - | chr3_4:76638798-76638817 | None:intergenic | 25.0% |
| ! | ACAATCAAAACAGTGATTAA+AGG | - | chr3_4:76638799-76638818 | None:intergenic | 25.0% |
| ! | TATTACAGGTACATCTTATT+CGG | + | chr3_4:76638985-76639004 | Msa0523320:intron | 25.0% |
| !!! | TTACCTTTTGTTGTTGATAA+AGG | + | chr3_4:76639454-76639473 | Msa0523320:intron | 25.0% |
| ! | CATTCAATAAATGATGTATG+TGG | + | chr3_4:76639672-76639691 | Msa0523320:intron | 25.0% |
| !! | ATTTTGCTTATAATAGTGAC+CGG | + | chr3_4:76639746-76639765 | Msa0523320:intron | 25.0% |
| !!! | ATAACATACATGTGTTTTTG+TGG | - | chr3_4:76640206-76640225 | None:intergenic | 25.0% |
| !! | TTATTATTCAAGTTACCGTT+AGG | + | chr3_4:76640297-76640316 | Msa0523320:intron | 25.0% |
| !! | TAAAATGTTGTTTGAATGAG+AGG | + | chr3_4:76640544-76640563 | Msa0523320:intron | 25.0% |
| ! | ATGCAAATTAAACTCTTACA+GGG | - | chr3_4:76640715-76640734 | None:intergenic | 25.0% |
| ! | TATGCAAATTAAACTCTTAC+AGG | - | chr3_4:76640716-76640735 | None:intergenic | 25.0% |
| !!! | TGTAAGAGTTTAATTTGCAT+AGG | + | chr3_4:76640715-76640734 | Msa0523320:intron | 25.0% |
| !! | TCCTAAATTCATTCTTTTAC+TGG | + | chr3_4:76641092-76641111 | Msa0523320:intron | 25.0% |
| ! | ACCAGTAAAAGAATGAATTT+AGG | - | chr3_4:76641096-76641115 | None:intergenic | 25.0% |
| ! | GAGTAATTTACTTAAATGGA+AGG | - | chr3_4:76641150-76641169 | None:intergenic | 25.0% |
| !! | AAAAAAACTACTTGGTTTGA+GGG | - | chr3_4:76641222-76641241 | None:intergenic | 25.0% |
| !! | AAAAAAAACTACTTGGTTTG+AGG | - | chr3_4:76641223-76641242 | None:intergenic | 25.0% |
| !! | AAACCAAATAGAAGGTATAA+AGG | - | chr3_4:76641415-76641434 | None:intergenic | 25.0% |
| ! | ATTCACCCAATGATATAATA+TGG | + | chr3_4:76641482-76641501 | Msa0523320:intron | 25.0% |
| ! | CCAATCCATATTATATCATT+GGG | - | chr3_4:76641490-76641509 | None:intergenic | 25.0% |
| !!! | AATTAATGTATTTTGACGCT+AGG | - | chr3_4:76641578-76641597 | None:intergenic | 25.0% |
| !! | TGAATTGCTATGTTATTTAC+AGG | + | chr3_4:76641700-76641719 | Msa0523320:intron | 25.0% |
| ! | TAGGTTATTTGTGCATTAAA+AGG | - | chr3_4:76641943-76641962 | None:intergenic | 25.0% |
| !!! | TAAAAAAAAGTTTGTTGCAG+AGG | - | chr3_4:76642243-76642262 | None:intergenic | 25.0% |
| !!! | TCTGCAACAAACTTTTTTTT+AGG | + | chr3_4:76642242-76642261 | Msa0523320:intron | 25.0% |
| !!! | CTGCAACAAACTTTTTTTTA+GGG | + | chr3_4:76642243-76642262 | Msa0523320:intron | 25.0% |
| ! | GATTATGAAGACAGTATTTA+TGG | + | chr3_4:76642623-76642642 | Msa0523320:CDS | 25.0% |
| ! | AATCTTATTGCTTACATGTT+TGG | + | chr3_4:76642809-76642828 | Msa0523320:intron | 25.0% |
| ! | ATCTTATTGCTTACATGTTT+GGG | + | chr3_4:76642810-76642829 | Msa0523320:intron | 25.0% |
| ! | ATTTAGATCAGTTTATTTGG+GGG | - | chr3_4:76642851-76642870 | None:intergenic | 25.0% |
| !!! | TGATGTTGAACATCATTTTT+TGG | - | chr3_4:76642927-76642946 | None:intergenic | 25.0% |
| ! | ACTTCATGAATTACATAACA+TGG | - | chr3_4:76643220-76643239 | None:intergenic | 25.0% |
| ! | TGAAGTCATTATGTAATCTA+TGG | + | chr3_4:76643234-76643253 | Msa0523320:three_prime_UTR | 25.0% |
| ! | TATAAACTACAAGACGAATT+GGG | - | chr3_4:76643284-76643303 | None:intergenic | 25.0% |
| ! | TTATAAACTACAAGACGAAT+TGG | - | chr3_4:76643285-76643304 | None:intergenic | 25.0% |
| ! | TCGTCTTGTAGTTTATAAAA+TGG | + | chr3_4:76643287-76643306 | Msa0523320:three_prime_UTR | 25.0% |
| TGAAACTTTCCATTCATTCA+GGG | + | chr3_4:76638637-76638656 | Msa0523320:five_prime_UTR | 30.0% | |
| GAGTGGTAATAATGAGAATT+GGG | - | chr3_4:76638747-76638766 | None:intergenic | 30.0% | |
| AGAGTGGTAATAATGAGAAT+TGG | - | chr3_4:76638748-76638767 | None:intergenic | 30.0% | |
| TTGGATTAATTAATGGAGAG+TGG | - | chr3_4:76638764-76638783 | None:intergenic | 30.0% | |
| ! | TAGCCTTAAAGAAGAAAATG+AGG | + | chr3_4:76638890-76638909 | Msa0523320:CDS | 30.0% |
| ! | GTACCTCATTTTCTTCTTTA+AGG | - | chr3_4:76638896-76638915 | None:intergenic | 30.0% |
| AAATCCGATGAAAACTGAAT+TGG | - | chr3_4:76638934-76638953 | None:intergenic | 30.0% | |
| TCGTTACATCACATTATTAC+AGG | + | chr3_4:76638971-76638990 | Msa0523320:intron | 30.0% | |
| TCACCTTTATCAACAACAAA+AGG | - | chr3_4:76639460-76639479 | None:intergenic | 30.0% | |
| GATGTAATTCTCTCTAATTG+AGG | - | chr3_4:76639538-76639557 | None:intergenic | 30.0% | |
| AAAGGAAGAAATCTGCAAAA+GGG | - | chr3_4:76639605-76639624 | None:intergenic | 30.0% | |
| TAAAGGAAGAAATCTGCAAA+AGG | - | chr3_4:76639606-76639625 | None:intergenic | 30.0% | |
| ATTTCTCTATTTCACACTGT+TGG | + | chr3_4:76639900-76639919 | Msa0523320:intron | 30.0% | |
| TGGTTTATTATGACACCTAA+CGG | - | chr3_4:76640315-76640334 | None:intergenic | 30.0% | |
| !! | GTAGGAAAACATGTTGATTT+GGG | + | chr3_4:76640359-76640378 | Msa0523320:intron | 30.0% |
| CAAGAACAGATAATCTTTCA+TGG | - | chr3_4:76640394-76640413 | None:intergenic | 30.0% | |
| GGATTACATATTGTCCATAA+GGG | + | chr3_4:76640676-76640695 | Msa0523320:intron | 30.0% | |
| GAACAAAATTAGATCCCTTA+TGG | - | chr3_4:76640693-76640712 | None:intergenic | 30.0% | |
| GTATAAAACTTTGTGGTGTT+TGG | - | chr3_4:76640781-76640800 | None:intergenic | 30.0% | |
| AAACCTCGTATAAAACTTTG+TGG | - | chr3_4:76640788-76640807 | None:intergenic | 30.0% | |
| ! | GTTTTATACGAGGTTTCATT+AGG | + | chr3_4:76640792-76640811 | Msa0523320:intron | 30.0% |
| !!! | GTCACTGCTTTTTTAAAATC+TGG | + | chr3_4:76640866-76640885 | Msa0523320:intron | 30.0% |
| !!! | ACTGCTTTTTTAAAATCTGG+TGG | + | chr3_4:76640869-76640888 | Msa0523320:intron | 30.0% |
| !! | TGTTGTTTGTATGTTTTGAG+AGG | - | chr3_4:76640929-76640948 | None:intergenic | 30.0% |
| CATACAAACAACAAAAACCT+AGG | + | chr3_4:76640936-76640955 | Msa0523320:intron | 30.0% | |
| ! | TTTTGTTAATCAGTACCTGT+TGG | + | chr3_4:76641241-76641260 | Msa0523320:intron | 30.0% |
| GGAATTTCATGTCTACTAAT+TGG | + | chr3_4:76641262-76641281 | Msa0523320:intron | 30.0% | |
| ACAAGTATGTTGTTCTTTCT+AGG | - | chr3_4:76641353-76641372 | None:intergenic | 30.0% | |
| ATGCCTTTATACCTTCTATT+TGG | + | chr3_4:76641409-76641428 | Msa0523320:intron | 30.0% | |
| TATAATATCTGTGTCTGAGA+TGG | + | chr3_4:76641435-76641454 | Msa0523320:intron | 30.0% | |
| CCCAATGATATAATATGGAT+TGG | + | chr3_4:76641487-76641506 | Msa0523320:intron | 30.0% | |
| GCCAATCCATATTATATCAT+TGG | - | chr3_4:76641491-76641510 | None:intergenic | 30.0% | |
| !! | GCTTTAAAACTATACATGAC+AGG | - | chr3_4:76641817-76641836 | None:intergenic | 30.0% |
| AAGAGAAAAGAAAGTAGAAC+AGG | + | chr3_4:76641873-76641892 | Msa0523320:intron | 30.0% | |
| TATGTATTACTTGTATTGCC+AGG | + | chr3_4:76642049-76642068 | Msa0523320:intron | 30.0% | |
| ACACAAATAAATACGGACAA+GGG | + | chr3_4:76642216-76642235 | Msa0523320:intron | 30.0% | |
| TAAGAATATGACCTTTCAGT+TGG | - | chr3_4:76642489-76642508 | None:intergenic | 30.0% | |
| GACATAGTCTATAAAGATCA+TGG | - | chr3_4:76642690-76642709 | None:intergenic | 30.0% | |
| !! | AACCACTTTACTTTTCAAAC+AGG | + | chr3_4:76642871-76642890 | Msa0523320:intron | 30.0% |
| !!! | CATCATTTTTTGGAGATGAA+AGG | - | chr3_4:76642917-76642936 | None:intergenic | 30.0% |
| ATACACAACAAGATGACAAA+TGG | - | chr3_4:76642964-76642983 | None:intergenic | 30.0% | |
| AACAGGATTAGATGTTACAT+TGG | + | chr3_4:76643068-76643087 | Msa0523320:three_prime_UTR | 30.0% | |
| TCTAATCTATGGATGATTCT+TGG | - | chr3_4:76643108-76643127 | None:intergenic | 30.0% | |
| ATAAACTACAAGACGAATTG+GGG | - | chr3_4:76643283-76643302 | None:intergenic | 30.0% | |
| AAAGTTTCAGATACACTGTC+CGG | - | chr3_4:76638626-76638645 | None:intergenic | 35.0% | |
| CTGAAACTTTCCATTCATTC+AGG | + | chr3_4:76638636-76638655 | Msa0523320:five_prime_UTR | 35.0% | |
| TTGAACTATCCCTGAATGAA+TGG | - | chr3_4:76638649-76638668 | None:intergenic | 35.0% | |
| !!! | CTGTTTTGATTGTCTTGTCT+AGG | + | chr3_4:76638806-76638825 | Msa0523320:intron | 35.0% |
| !! | TTCTTTAAGGCTAAGAGTTC+CGG | - | chr3_4:76638883-76638902 | None:intergenic | 35.0% |
| ! | TGCTCCAATTCAGTTTTCAT+CGG | + | chr3_4:76638927-76638946 | Msa0523320:intron | 35.0% |
| GATCAAAAGGACAAGAAACA+AGG | - | chr3_4:76639076-76639095 | None:intergenic | 35.0% | |
| ! | CAAGAAGCACAAACTATCTA+TGG | - | chr3_4:76639261-76639280 | None:intergenic | 35.0% |
| TTACTGTTTGAGAGAGCTTA+TGG | + | chr3_4:76639295-76639314 | Msa0523320:intron | 35.0% | |
| TACTGTTTGAGAGAGCTTAT+GGG | + | chr3_4:76639296-76639315 | Msa0523320:intron | 35.0% | |
| AAGCTATCATAGACAGCTTA+CGG | - | chr3_4:76639339-76639358 | None:intergenic | 35.0% | |
| ! | GTTGATAAAGGTGAAACCTA+TGG | + | chr3_4:76639466-76639485 | Msa0523320:intron | 35.0% |
| TTTAACTCGCCATATAACTC+CGG | - | chr3_4:76639511-76639530 | None:intergenic | 35.0% | |
| TACTCACCATTTGATCTTAC+CGG | - | chr3_4:76639575-76639594 | None:intergenic | 35.0% | |
| TGCTTATAATAGTGATCGGA+GGG | - | chr3_4:76639633-76639652 | None:intergenic | 35.0% | |
| TTGCTTATAATAGTGATCGG+AGG | - | chr3_4:76639634-76639653 | None:intergenic | 35.0% | |
| TACTACCAAGCAGTATTCTT+TGG | + | chr3_4:76640038-76640057 | Msa0523320:intron | 35.0% | |
| AATTTATCATGCCTTCCAGT+TGG | - | chr3_4:76640067-76640086 | None:intergenic | 35.0% | |
| ATGATGAAAACCTATGCTTG+TGG | + | chr3_4:76640098-76640117 | Msa0523320:CDS | 35.0% | |
| ! | GGTAGGAAAACATGTTGATT+TGG | + | chr3_4:76640358-76640377 | Msa0523320:intron | 35.0% |
| !! | AAAACATGTTGATTTGGGAG+AGG | + | chr3_4:76640364-76640383 | Msa0523320:intron | 35.0% |
| GAGTCTAGAGAGAAACTATT+TGG | - | chr3_4:76640427-76640446 | None:intergenic | 35.0% | |
| ATAGTTTCTCTCTAGACTCT+AGG | + | chr3_4:76640428-76640447 | Msa0523320:intron | 35.0% | |
| !!! | AGAGGCATTTTAGAAAACGA+AGG | + | chr3_4:76640562-76640581 | Msa0523320:intron | 35.0% |
| !! | GAGGCATTTTAGAAAACGAA+GGG | + | chr3_4:76640563-76640582 | Msa0523320:intron | 35.0% |
| ! | CTGTTGATGAGTGAAGATAT+TGG | + | chr3_4:76640586-76640605 | Msa0523320:intron | 35.0% |
| AGTTGTTTGGAGAAATCCAT+TGG | - | chr3_4:76640612-76640631 | None:intergenic | 35.0% | |
| GTGGCTTATATCATAAACTG+TGG | - | chr3_4:76640649-76640668 | None:intergenic | 35.0% | |
| ATGATATAAGCCACTGAGAA+CGG | + | chr3_4:76640655-76640674 | Msa0523320:intron | 35.0% | |
| AATATGTAATCCGTTCTCAG+TGG | - | chr3_4:76640668-76640687 | None:intergenic | 35.0% | |
| CGGATTACATATTGTCCATA+AGG | + | chr3_4:76640675-76640694 | Msa0523320:intron | 35.0% | |
| !! | TGTTTGGCTTGCATTAAGAA+TGG | - | chr3_4:76640765-76640784 | None:intergenic | 35.0% |
| !! | ACACCACAAAGTTTTATACG+AGG | + | chr3_4:76640782-76640801 | Msa0523320:intron | 35.0% |
| TTTCATTAGGACCTAAGATC+TGG | + | chr3_4:76640805-76640824 | Msa0523320:intron | 35.0% | |
| TTCATTAGGACCTAAGATCT+GGG | + | chr3_4:76640806-76640825 | Msa0523320:intron | 35.0% | |
| AGCAGTGACTATCAACATAA+AGG | - | chr3_4:76640855-76640874 | None:intergenic | 35.0% | |
| !!! | GTTTGTATGTTTTGAGAGGA+GGG | - | chr3_4:76640925-76640944 | None:intergenic | 35.0% |
| !!! | TGTTTGTATGTTTTGAGAGG+AGG | - | chr3_4:76640926-76640945 | None:intergenic | 35.0% |
| ! | TGAATCATCTCTCCAGTTTT+GGG | + | chr3_4:76641047-76641066 | Msa0523320:CDS | 35.0% |
| !! | ACTCATTGCATTTCAAGTTC+AGG | + | chr3_4:76641166-76641185 | Msa0523320:intron | 35.0% |
| AGTAGACATGAAATTCCAAC+AGG | - | chr3_4:76641259-76641278 | None:intergenic | 35.0% | |
| ! | GTATGTTGTTCTTTCTAGGA+TGG | - | chr3_4:76641349-76641368 | None:intergenic | 35.0% |
| !! | TTCCCATTTGTTGTTACGAT+CGG | + | chr3_4:76641917-76641936 | Msa0523320:intron | 35.0% |
| CACACAAATAAATACGGACA+AGG | + | chr3_4:76642215-76642234 | Msa0523320:intron | 35.0% | |
| TTTATCTCAATCCTGAGCAA+GGG | - | chr3_4:76642277-76642296 | None:intergenic | 35.0% | |
| ATTTGGATATTTCAGAGTGC+TGG | + | chr3_4:76642411-76642430 | Msa0523320:intron | 35.0% | |
| TAACTCATCATGGTTTATCG+AGG | - | chr3_4:76642466-76642485 | None:intergenic | 35.0% | |
| !! | TTTCAGTTGGTAACTCATCA+TGG | - | chr3_4:76642476-76642495 | None:intergenic | 35.0% |
| ATGATGAGTTACCAACTGAA+AGG | + | chr3_4:76642475-76642494 | Msa0523320:CDS | 35.0% | |
| TTCATCTTTGCTCGCATATT+TGG | + | chr3_4:76642545-76642564 | Msa0523320:intron | 35.0% | |
| TCACTGTATGTATTAAGCAG+TGG | - | chr3_4:76642605-76642624 | None:intergenic | 35.0% | |
| GTATTTATGGTAAGAGCTTC+TGG | + | chr3_4:76642636-76642655 | Msa0523320:intron | 35.0% | |
| ! | TTCATTTTACAGGGCTTACA+TGG | + | chr3_4:76642723-76642742 | Msa0523320:intron | 35.0% |
| GACAAAGATGCAAAAATCCA+TGG | - | chr3_4:76642761-76642780 | None:intergenic | 35.0% | |
| TTTGCATCTTTGTCCTATGA+CGG | + | chr3_4:76642767-76642786 | Msa0523320:CDS | 35.0% | |
| CACCTGTTTGAAAAGTAAAG+TGG | - | chr3_4:76642876-76642895 | None:intergenic | 35.0% | |
| !! | CACTTTACTTTTCAAACAGG+TGG | + | chr3_4:76642874-76642893 | Msa0523320:intron | 35.0% |
| TGAAGACTCAACATAGTTGT+TGG | + | chr3_4:76643028-76643047 | Msa0523320:three_prime_UTR | 35.0% | |
| TTGATGTTGAGATTCACACT+TGG | - | chr3_4:76643335-76643354 | None:intergenic | 35.0% | |
| !!! | GCCATTTTTGGGTTTAACTC+CGG | + | chr3_4:76638604-76638623 | Msa0523320:five_prime_UTR | 40.0% |
| TCCGGAGTTAAACCCAAAAA+TGG | - | chr3_4:76638608-76638627 | None:intergenic | 40.0% | |
| ACAATGCAAGCTGTATCATC+TGG | + | chr3_4:76638688-76638707 | Msa0523320:exon | 40.0% | |
| CAAGCTGTATCATCTGGTAT+CGG | + | chr3_4:76638694-76638713 | Msa0523320:CDS | 40.0% | |
| !! | GTATCATCTGGTATCGGTTA+TGG | + | chr3_4:76638700-76638719 | Msa0523320:CDS | 40.0% |
| CGGTTATGGTCTCAAATATC+AGG | + | chr3_4:76638714-76638733 | Msa0523320:CDS | 40.0% | |
| GGTACATCTTATTCGGCTTT+CGG | + | chr3_4:76638992-76639011 | Msa0523320:intron | 40.0% | |
| CAATCCCTCACAGAAAAGTT+CGG | - | chr3_4:76639027-76639046 | None:intergenic | 40.0% | |
| TTTCACATCCCAATGAGATC+TGG | + | chr3_4:76639048-76639067 | Msa0523320:CDS | 40.0% | |
| TTCACATCCCAATGAGATCT+GGG | + | chr3_4:76639049-76639068 | Msa0523320:CDS | 40.0% | |
| ! | GAGAAAATGCGCTGATCAAA+AGG | - | chr3_4:76639089-76639108 | None:intergenic | 40.0% |
| AAACCTATGGAGCAGCAATA+TGG | + | chr3_4:76639479-76639498 | Msa0523320:CDS | 40.0% | |
| ACATCTCTCGAAACTCAATC+CGG | + | chr3_4:76639553-76639572 | Msa0523320:CDS | 40.0% | |
| CTCAATCCGGTAAGATCAAA+TGG | + | chr3_4:76639566-76639585 | Msa0523320:CDS | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | + | chr3_4:76639749-76639768 | Msa0523320:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | + | chr3_4:76639750-76639769 | Msa0523320:intron | 40.0% | |
| ! | CACTGTTGGACTACTCTTTT+TGG | + | chr3_4:76639914-76639933 | Msa0523320:intron | 40.0% |
| TACCAAGCAGTATTCTTTGG+TGG | + | chr3_4:76640041-76640060 | Msa0523320:intron | 40.0% | |
| AAACCTATGCTTGTGGAGTT+TGG | + | chr3_4:76640105-76640124 | Msa0523320:CDS | 40.0% | |
| TGTTTCCAAGAAAACTGCAC+AGG | + | chr3_4:76640129-76640148 | Msa0523320:CDS | 40.0% | |
| AAATGAACCCTTACCACGAA+GGG | + | chr3_4:76640337-76640356 | Msa0523320:intron | 40.0% | |
| TGAGTGAAGATATTGGCCAA+TGG | + | chr3_4:76640593-76640612 | Msa0523320:intron | 40.0% | |
| ATCACAGGCTAACAGTTGTT+TGG | - | chr3_4:76640625-76640644 | None:intergenic | 40.0% | |
| ATCATAAACTGTGGCATCAC+AGG | - | chr3_4:76640640-76640659 | None:intergenic | 40.0% | |
| TCATTAGGACCTAAGATCTG+GGG | + | chr3_4:76640807-76640826 | Msa0523320:intron | 40.0% | |
| TGAATCTTGGGATTGTACCT+AGG | - | chr3_4:76640956-76640975 | None:intergenic | 40.0% | |
| CATCATACCAGCTGAATCTT+GGG | - | chr3_4:76640968-76640987 | None:intergenic | 40.0% | |
| GGTATGATGCACAAGTTATC+TGG | + | chr3_4:76640979-76640998 | Msa0523320:CDS | 40.0% | |
| ATGATGCACAAGTTATCTGG+AGG | + | chr3_4:76640982-76641001 | Msa0523320:CDS | 40.0% | |
| TGATGCACAAGTTATCTGGA+GGG | + | chr3_4:76640983-76641002 | Msa0523320:CDS | 40.0% | |
| GCTACAGAATTCATGTCATG+TGG | - | chr3_4:76641018-76641037 | None:intergenic | 40.0% | |
| ! | CTGAATCATCTCTCCAGTTT+TGG | + | chr3_4:76641046-76641065 | Msa0523320:CDS | 40.0% |
| !! | TGCATTTCAAGTTCAGGATC+TGG | + | chr3_4:76641172-76641191 | Msa0523320:intron | 40.0% |
| TAGGATGGTAATCAACACTG+CGG | - | chr3_4:76641334-76641353 | None:intergenic | 40.0% | |
| AGGCATGTATCAGTAGAATG+AGG | - | chr3_4:76641395-76641414 | None:intergenic | 40.0% | |
| CAACGTCTTTGTGTTCATGT+TGG | + | chr3_4:76641671-76641690 | Msa0523320:intron | 40.0% | |
| ATGAGTCAGGGATACACATT+TGG | + | chr3_4:76641735-76641754 | Msa0523320:CDS | 40.0% | |
| TGAGTCAGGGATACACATTT+GGG | + | chr3_4:76641736-76641755 | Msa0523320:CDS | 40.0% | |
| !! | AGCTCTTGGATTGGAACTTT+TGG | - | chr3_4:76641773-76641792 | None:intergenic | 40.0% |
| TTACTTGTATTGCCAGGACA+TGG | + | chr3_4:76642055-76642074 | Msa0523320:intron | 40.0% | |
| AAGTGTAACCCAGAGTATGA+CGG | + | chr3_4:76642084-76642103 | Msa0523320:CDS | 40.0% | |
| GTTTATCTCAATCCTGAGCA+AGG | - | chr3_4:76642278-76642297 | None:intergenic | 40.0% | |
| !! | GATATTTCAGAGTGCTGGAA+CGG | + | chr3_4:76642416-76642435 | Msa0523320:intron | 40.0% |
| TAAGCAGTGGATCAACCAAA+CGG | - | chr3_4:76642592-76642611 | None:intergenic | 40.0% | |
| ! | ATCTTTGTCCTATGACGGAA+GGG | + | chr3_4:76642772-76642791 | Msa0523320:CDS | 40.0% |
| ! | TTTTCTTACCCTTCCGTCAT+AGG | - | chr3_4:76642783-76642802 | None:intergenic | 40.0% |
| TGTTTATCTCAAGACTCCAG+AGG | - | chr3_4:76643002-76643021 | None:intergenic | 40.0% | |
| GGAGTCTTGAGATAAACAGA+TGG | + | chr3_4:76643004-76643023 | Msa0523320:three_prime_UTR | 40.0% | |
| AGACTCAACATAGTTGTTGG+TGG | + | chr3_4:76643031-76643050 | Msa0523320:three_prime_UTR | 40.0% | |
| GACTCAACATAGTTGTTGGT+GGG | + | chr3_4:76643032-76643051 | Msa0523320:three_prime_UTR | 40.0% | |
| ! | TGGGTTTGATGTTGGTTAAC+AGG | + | chr3_4:76643051-76643070 | Msa0523320:three_prime_UTR | 40.0% |
| CTATGGATGATTCTTGGTCA+AGG | - | chr3_4:76643102-76643121 | None:intergenic | 40.0% | |
| AACCCAAAAATGGCACCGTA+GGG | - | chr3_4:76638598-76638617 | None:intergenic | 45.0% | |
| AAACCCAAAAATGGCACCGT+AGG | - | chr3_4:76638599-76638618 | None:intergenic | 45.0% | |
| CTTATTCGGCTTTCGGCAAA+TGG | + | chr3_4:76638999-76639018 | Msa0523320:CDS | 45.0% | |
| ! | TGGAACCGAACTTTTCTGTG+AGG | + | chr3_4:76639019-76639038 | Msa0523320:CDS | 45.0% |
| ! | GGAACCGAACTTTTCTGTGA+GGG | + | chr3_4:76639020-76639039 | Msa0523320:CDS | 45.0% |
| ACAAGGTCCCAGATCTCATT+GGG | - | chr3_4:76639059-76639078 | None:intergenic | 45.0% | |
| AACAAGGTCCCAGATCTCAT+TGG | - | chr3_4:76639060-76639079 | None:intergenic | 45.0% | |
| AGCAGCAATATGGCAGATTC+CGG | + | chr3_4:76639489-76639508 | Msa0523320:CDS | 45.0% | |
| TGGCAGATTCCGGAGTTATA+TGG | + | chr3_4:76639499-76639518 | Msa0523320:CDS | 45.0% | |
| ! | AGTGATCGGAGGGAGTATAA+AGG | - | chr3_4:76639623-76639642 | None:intergenic | 45.0% |
| GTGCAAAACAATACTCCCTC+CGG | - | chr3_4:76639768-76639787 | None:intergenic | 45.0% | |
| TCAGGCAATGAGACAGTCTA+TGG | - | chr3_4:76639802-76639821 | None:intergenic | 45.0% | |
| ATAGACTGTCTCATTGCCTG+AGG | + | chr3_4:76639801-76639820 | Msa0523320:intron | 45.0% | |
| TGTCTCATTGCCTGAGGTTT+AGG | + | chr3_4:76639807-76639826 | Msa0523320:intron | 45.0% | |
| CTGACAACTTCCTAAACCTC+AGG | - | chr3_4:76639820-76639839 | None:intergenic | 45.0% | |
| GAAGTTGTCAGAAGACGTTG+AGG | + | chr3_4:76639829-76639848 | Msa0523320:intron | 45.0% | |
| ! | AGTATTCTTTGGTGGCCAAC+TGG | + | chr3_4:76640049-76640068 | Msa0523320:intron | 45.0% |
| CATCCAAACTCCACAAGCAT+AGG | - | chr3_4:76640111-76640130 | None:intergenic | 45.0% | |
| ! | TCGTACCTGTGCAGTTTTCT+TGG | - | chr3_4:76640137-76640156 | None:intergenic | 45.0% |
| CTGCACAGGTACGAAGTTTA+TGG | + | chr3_4:76640143-76640162 | Msa0523320:intron | 45.0% | |
| CGTGGTAAGGGTTCATTTGT+TGG | - | chr3_4:76640335-76640354 | None:intergenic | 45.0% | |
| CAAATGAACCCTTACCACGA+AGG | + | chr3_4:76640336-76640355 | Msa0523320:intron | 45.0% | |
| TTTCCTACCCTTCGTGGTAA+GGG | - | chr3_4:76640347-76640366 | None:intergenic | 45.0% | |
| ! | TTTTCCTACCCTTCGTGGTA+AGG | - | chr3_4:76640348-76640367 | None:intergenic | 45.0% |
| ! | ACATGTTTTCCTACCCTTCG+TGG | - | chr3_4:76640353-76640372 | None:intergenic | 45.0% |
| !!! | TGTATGTTTTGAGAGGAGGG+TGG | - | chr3_4:76640922-76640941 | None:intergenic | 45.0% |
| GTACAATCCCAAGATTCAGC+TGG | + | chr3_4:76640958-76640977 | Msa0523320:CDS | 45.0% | |
| GCATCATACCAGCTGAATCT+TGG | - | chr3_4:76640969-76640988 | None:intergenic | 45.0% | |
| GATGCACAAGTTATCTGGAG+GGG | + | chr3_4:76640984-76641003 | Msa0523320:CDS | 45.0% | |
| TCGTTCTCACATCCCAAAAC+TGG | - | chr3_4:76641062-76641081 | None:intergenic | 45.0% | |
| GTAATCAACACTGCGGACAT+GGG | - | chr3_4:76641327-76641346 | None:intergenic | 45.0% | |
| TTACAGCAGAGCATGAGTCA+GGG | + | chr3_4:76641723-76641742 | Msa0523320:CDS | 45.0% | |
| ATGACAGGTACCAATGTGTG+TGG | - | chr3_4:76641802-76641821 | None:intergenic | 45.0% | |
| GGCCGATCGTAACAACAAAT+GGG | - | chr3_4:76641922-76641941 | None:intergenic | 45.0% | |
| AGGCCGATCGTAACAACAAA+TGG | - | chr3_4:76641923-76641942 | None:intergenic | 45.0% | |
| ACACTTGACAATCCATGTCC+TGG | - | chr3_4:76642070-76642089 | None:intergenic | 45.0% | |
| GGATCATTCCGTCATACTCT+GGG | - | chr3_4:76642095-76642114 | None:intergenic | 45.0% | |
| AGGATCATTCCGTCATACTC+TGG | - | chr3_4:76642096-76642115 | None:intergenic | 45.0% | |
| ! | AGAGTATGACGGAATGATCC+TGG | + | chr3_4:76642095-76642114 | Msa0523320:CDS | 45.0% |
| TTCGACTGTCAACTTGTGGT+CGG | + | chr3_4:76642440-76642459 | Msa0523320:CDS | 45.0% | |
| ! | CATCTTTGTCCTATGACGGA+AGG | + | chr3_4:76642771-76642790 | Msa0523320:CDS | 45.0% |
| TGTCAGTAATTTCCTGCCTC+TGG | + | chr3_4:76642983-76643002 | Msa0523320:three_prime_UTR | 45.0% | |
| !! | GTTGTTGGTGGGTTTGATGT+TGG | + | chr3_4:76643043-76643062 | Msa0523320:three_prime_UTR | 45.0% |
| !!! | ATTTTATTTTTTTATTTGAA+AGG | + | chr3_4:76641839-76641858 | Msa0523320:intron | 5.0% |
| !!! | ACACCCTACGGTGCCATTTT+TGG | + | chr3_4:76638592-76638611 | Msa0523320:five_prime_UTR | 50.0% |
| !!! | CACCCTACGGTGCCATTTTT+GGG | + | chr3_4:76638593-76638612 | Msa0523320:five_prime_UTR | 50.0% |
| GATCACACAAGTTTCCTCGC+CGG | + | chr3_4:76638861-76638880 | Msa0523320:CDS | 50.0% | |
| CTGCCATATTGCTGCTCCAT+AGG | - | chr3_4:76639485-76639504 | None:intergenic | 50.0% | |
| GGCCACCAAAGAATACTGCT+TGG | - | chr3_4:76640046-76640065 | None:intergenic | 50.0% | |
| ! | TTCTTTGGTGGCCAACTGGA+AGG | + | chr3_4:76640053-76640072 | Msa0523320:CDS | 50.0% |
| ! | TAGGACCTAAGATCTGGGGT+TGG | + | chr3_4:76640811-76640830 | Msa0523320:intron | 50.0% |
| ! | AGGACCTAAGATCTGGGGTT+GGG | + | chr3_4:76640812-76640831 | Msa0523320:intron | 50.0% |
| AAGTCCCAACCCCAGATCTT+AGG | - | chr3_4:76640819-76640838 | None:intergenic | 50.0% | |
| ACAAGTTATCTGGAGGGGCA+TGG | + | chr3_4:76640989-76641008 | Msa0523320:CDS | 50.0% | |
| ! | CAAGTTATCTGGAGGGGCAT+GGG | + | chr3_4:76640990-76641009 | Msa0523320:CDS | 50.0% |
| AAGTTCAGGATCTGGTGTGC+TGG | + | chr3_4:76641180-76641199 | Msa0523320:intron | 50.0% | |
| GGTAATCAACACTGCGGACA+TGG | - | chr3_4:76641328-76641347 | None:intergenic | 50.0% | |
| GTTACAGCAGAGCATGAGTC+AGG | + | chr3_4:76641722-76641741 | Msa0523320:CDS | 50.0% | |
| GTTCCAATCCAAGAGCTTCC+AGG | + | chr3_4:76641776-76641795 | Msa0523320:CDS | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+GGG | - | chr3_4:76642125-76642144 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | - | chr3_4:76642126-76642145 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr3_4:76642125-76642144 | None:intergenic | 50.0% | |
| GTACATATGCACAGACGCAC+TGG | + | chr3_4:76642328-76642347 | Msa0523320:intron | 50.0% | |
| CGGATTCGACTGTCAACTTG+TGG | + | chr3_4:76642436-76642455 | Msa0523320:CDS | 50.0% | |
| AACGGACAGATGACTCTGCT+TGG | - | chr3_4:76642574-76642593 | None:intergenic | 50.0% | |
| AGCAGAGTCATCTGTCCGTT+TGG | + | chr3_4:76642574-76642593 | Msa0523320:CDS | 50.0% | |
| CATGGAGTTCTCGTCAACCA+TGG | + | chr3_4:76642741-76642760 | Msa0523320:CDS | 50.0% | |
| TATCTCAAGACTCCAGAGGC+AGG | - | chr3_4:76642998-76643017 | None:intergenic | 50.0% | |
| ATGGCACCGTAGGGTGTGTT+TGG | - | chr3_4:76638589-76638608 | None:intergenic | 55.0% | |
| TAAGGCTAAGAGTTCCGGCG+AGG | - | chr3_4:76638878-76638897 | None:intergenic | 55.0% | |
| GAACCCTTACCACGAAGGGT+AGG | + | chr3_4:76640341-76640360 | Msa0523320:intron | 55.0% | |
| AGGATCTGGTGTGCTGGAAG+AGG | + | chr3_4:76641186-76641205 | Msa0523320:intron | 55.0% | |
| GGATCTGGTGTGCTGGAAGA+GGG | + | chr3_4:76641187-76641206 | Msa0523320:intron | 55.0% | |
| TGGCCTGGAAGCTCTTGGAT+TGG | - | chr3_4:76641782-76641801 | None:intergenic | 55.0% | |
| AGCTTCCAGGCCACACACAT+TGG | + | chr3_4:76641789-76641808 | Msa0523320:CDS | 55.0% | |
| AGGTACCAATGTGTGTGGCC+TGG | - | chr3_4:76641797-76641816 | None:intergenic | 55.0% | |
| GGGTGAATACACCCTTGCTC+AGG | + | chr3_4:76642263-76642282 | Msa0523320:intron | 55.0% | |
| ! | TGCACAGACGCACTGGTGAA+AGG | + | chr3_4:76642335-76642354 | Msa0523320:intron | 55.0% |
| ! | ACAGACGCACTGGTGAAAGG+TGG | + | chr3_4:76642338-76642357 | Msa0523320:intron | 55.0% |
| ! | CAGACGCACTGGTGAAAGGT+GGG | + | chr3_4:76642339-76642358 | Msa0523320:intron | 55.0% |
| GTGTGTGGCCTGGAAGCTCT+TGG | - | chr3_4:76641787-76641806 | None:intergenic | 60.0% | |
| GAGAGAGAGAGAGAGAGGGG+AGG | - | chr3_4:76642122-76642141 | None:intergenic | 60.0% | |
| GAGAGAGAGAGGGGAGGACC+AGG | - | chr3_4:76642116-76642135 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 76638585 | 76643376 | 76638585 | ID=Msa0523320;Name=Msa0523320 |
| chr3_4 | mRNA | 76638585 | 76643376 | 76638585 | ID=Msa0523320-mRNA-1;Parent=Msa0523320;Name=Msa0523320-mRNA-1;_AED=0.27;_eAED=0.27;_QI=106|0.91|0.84|1|1|1|13|442|336 |
| chr3_4 | exon | 76638585 | 76638735 | 76638585 | ID=Msa0523320-mRNA-1:exon:22285;Parent=Msa0523320-mRNA-1 |
| chr3_4 | exon | 76638828 | 76638911 | 76638828 | ID=Msa0523320-mRNA-1:exon:22286;Parent=Msa0523320-mRNA-1 |
| chr3_4 | exon | 76638993 | 76639083 | 76638993 | ID=Msa0523320-mRNA-1:exon:22287;Parent=Msa0523320-mRNA-1 |
| chr3_4 | exon | 76639476 | 76639587 | 76639476 | ID=Msa0523320-mRNA-1:exon:22288;Parent=Msa0523320-mRNA-1 |
| chr3_4 | exon | 76640051 | 76640150 | 76640051 | ID=Msa0523320-mRNA-1:exon:22289;Parent=Msa0523320-mRNA-1 |
| chr3_4 | exon | 76640958 | 76641085 | 76640958 | ID=Msa0523320-mRNA-1:exon:22290;Parent=Msa0523320-mRNA-1 |
| chr3_4 | exon | 76641301 | 76641370 | 76641301 | ID=Msa0523320-mRNA-1:exon:22291;Parent=Msa0523320-mRNA-1 |
| chr3_4 | exon | 76641722 | 76641810 | 76641722 | ID=Msa0523320-mRNA-1:exon:22292;Parent=Msa0523320-mRNA-1 |
| chr3_4 | exon | 76642071 | 76642116 | 76642071 | ID=Msa0523320-mRNA-1:exon:22293;Parent=Msa0523320-mRNA-1 |
| chr3_4 | exon | 76642426 | 76642496 | 76642426 | ID=Msa0523320-mRNA-1:exon:22294;Parent=Msa0523320-mRNA-1 |
| chr3_4 | exon | 76642571 | 76642644 | 76642571 | ID=Msa0523320-mRNA-1:exon:22295;Parent=Msa0523320-mRNA-1 |
| chr3_4 | exon | 76642735 | 76642793 | 76642735 | ID=Msa0523320-mRNA-1:exon:22296;Parent=Msa0523320-mRNA-1 |
| chr3_4 | exon | 76642893 | 76643376 | 76642893 | ID=Msa0523320-mRNA-1:exon:22297;Parent=Msa0523320-mRNA-1 |
| chr3_4 | five_prime_UTR | 76638585 | 76638690 | 76638585 | ID=Msa0523320-mRNA-1:five_prime_utr;Parent=Msa0523320-mRNA-1 |
| chr3_4 | CDS | 76638691 | 76638735 | 76638691 | ID=Msa0523320-mRNA-1:cds;Parent=Msa0523320-mRNA-1 |
| chr3_4 | CDS | 76638828 | 76638911 | 76638828 | ID=Msa0523320-mRNA-1:cds;Parent=Msa0523320-mRNA-1 |
| chr3_4 | CDS | 76638993 | 76639083 | 76638993 | ID=Msa0523320-mRNA-1:cds;Parent=Msa0523320-mRNA-1 |
| chr3_4 | CDS | 76639476 | 76639587 | 76639476 | ID=Msa0523320-mRNA-1:cds;Parent=Msa0523320-mRNA-1 |
| chr3_4 | CDS | 76640051 | 76640150 | 76640051 | ID=Msa0523320-mRNA-1:cds;Parent=Msa0523320-mRNA-1 |
| chr3_4 | CDS | 76640958 | 76641085 | 76640958 | ID=Msa0523320-mRNA-1:cds;Parent=Msa0523320-mRNA-1 |
| chr3_4 | CDS | 76641301 | 76641370 | 76641301 | ID=Msa0523320-mRNA-1:cds;Parent=Msa0523320-mRNA-1 |
| chr3_4 | CDS | 76641722 | 76641810 | 76641722 | ID=Msa0523320-mRNA-1:cds;Parent=Msa0523320-mRNA-1 |
| chr3_4 | CDS | 76642071 | 76642116 | 76642071 | ID=Msa0523320-mRNA-1:cds;Parent=Msa0523320-mRNA-1 |
| chr3_4 | CDS | 76642426 | 76642496 | 76642426 | ID=Msa0523320-mRNA-1:cds;Parent=Msa0523320-mRNA-1 |
| chr3_4 | CDS | 76642571 | 76642644 | 76642571 | ID=Msa0523320-mRNA-1:cds;Parent=Msa0523320-mRNA-1 |
| chr3_4 | CDS | 76642735 | 76642793 | 76642735 | ID=Msa0523320-mRNA-1:cds;Parent=Msa0523320-mRNA-1 |
| chr3_4 | CDS | 76642893 | 76642934 | 76642893 | ID=Msa0523320-mRNA-1:cds;Parent=Msa0523320-mRNA-1 |
| chr3_4 | three_prime_UTR | 76642935 | 76643376 | 76642935 | ID=Msa0523320-mRNA-1:three_prime_utr;Parent=Msa0523320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
