Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404260 | XP_013462258.1 | 98.857 | 350 | 4 | 0 | 1 | 350 | 1 | 350 | 0.0 | 718 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404260 | sp|Q6NPN9|DWA2_ARATH | 70.571 | 350 | 103 | 0 | 1 | 350 | 1 | 350 | 0.0 | 531 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404260 | A0A072V4M1 | 98.857 | 350 | 4 | 0 | 1 | 350 | 1 | 350 | 0.0 | 718 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012080 | Msa0404260 | 0.819915 | 9.038893e-53 | -8.615850e-47 |
| Msa0075220 | Msa0404260 | 0.816322 | 5.871099e-52 | -8.615850e-47 |
| Msa0116770 | Msa0404260 | 0.821927 | 3.112682e-53 | -8.615850e-47 |
| Msa0165210 | Msa0404260 | 0.810483 | 1.127028e-50 | -8.615850e-47 |
| Msa0165220 | Msa0404260 | 0.810506 | 1.114394e-50 | -8.615850e-47 |
| Msa0167520 | Msa0404260 | 0.800005 | 1.765191e-48 | -8.615850e-47 |
| Msa0186430 | Msa0404260 | 0.860791 | 1.614466e-63 | -8.615850e-47 |
| Msa0198350 | Msa0404260 | 0.801971 | 7.001011e-49 | -8.615850e-47 |
| Msa0225740 | Msa0404260 | 0.803437 | 3.487866e-49 | -8.615850e-47 |
| Msa0385810 | Msa0404260 | 0.996854 | 3.503352e-233 | -8.615850e-47 |
| Msa0404260 | Msa0417880 | 0.808665 | 2.770637e-50 | -8.615850e-47 |
| Msa0404260 | Msa0422850 | 0.805496 | 1.298163e-49 | -8.615850e-47 |
| Msa0404260 | Msa0422930 | 0.806772 | 6.994617e-50 | -8.615850e-47 |
| Msa0404260 | Msa0475790 | 0.811954 | 5.406389e-51 | -8.615850e-47 |
| Msa0404260 | Msa0479200 | 0.803547 | 3.308633e-49 | -8.615850e-47 |
| Msa0404260 | Msa0523270 | 0.855515 | 5.989499e-62 | -8.615850e-47 |
| Msa0404260 | Msa0523320 | 0.904097 | 1.750643e-79 | -8.615850e-47 |
| Msa0404260 | Msa0529890 | 0.800132 | 1.663646e-48 | -8.615850e-47 |
| Msa0404260 | Msa0574890 | 0.802609 | 5.171860e-49 | -8.615850e-47 |
| Msa0404260 | Msa0661790 | 0.801583 | 8.408928e-49 | -8.615850e-47 |
| Msa0404260 | Msa0691980 | 0.805358 | 1.387176e-49 | -8.615850e-47 |
| Msa0404260 | Msa0844570 | 0.804364 | 2.238737e-49 | -8.615850e-47 |
| Msa0404260 | Msa0869780 | 0.805430 | 1.340263e-49 | -8.615850e-47 |
| Msa0404260 | Msa1066490 | 0.839337 | 1.683261e-57 | -8.615850e-47 |
| Msa0404260 | Msa1079230 | 0.835342 | 1.774900e-56 | -8.615850e-47 |
| Msa0404260 | Msa1106700 | 0.831818 | 1.345140e-55 | -8.615850e-47 |
| Msa0404260 | Msa1124110 | 0.825027 | 5.863324e-54 | -8.615850e-47 |
| Msa0404260 | Msa1168950 | 0.841535 | 4.480301e-58 | -8.615850e-47 |
| Msa0404260 | Msa1169040 | 0.832508 | 9.082629e-56 | -8.615850e-47 |
| Msa0404260 | Msa1203710 | 0.801802 | 7.582734e-49 | -8.615850e-47 |
| Msa0404260 | Msa1206850 | 0.814996 | 1.159110e-51 | -8.615850e-47 |
| Msa0404260 | Msa1257130 | 0.815927 | 7.194842e-52 | -8.615850e-47 |
| Msa0404260 | Msa1265590 | 0.801710 | 7.919477e-49 | -8.615850e-47 |
| Msa0404260 | Msa1370010 | 0.807515 | 4.868095e-50 | -8.615850e-47 |
| Msa0263080 | Msa0404260 | 0.812302 | 4.540233e-51 | -8.615850e-47 |
| Msa0264870 | Msa0404260 | 0.808167 | 3.537170e-50 | -8.615850e-47 |
| Msa0292400 | Msa0404260 | 0.813151 | 2.958742e-51 | -8.615850e-47 |
| Msa0300690 | Msa0404260 | 0.807125 | 5.888477e-50 | -8.615850e-47 |
| Msa0340290 | Msa0404260 | 0.814234 | 1.709254e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404260 | MtrunA17_Chr3g0143791 | 98.857 | 350 | 4 | 0 | 1 | 350 | 1 | 350 | 0.0 | 718 |
| Msa0404260 | MtrunA17_Chr4g0036951 | 26.131 | 199 | 139 | 5 | 141 | 335 | 183 | 377 | 5.17e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404260 | AT1G20540.1 | 74.571 | 350 | 88 | 1 | 1 | 349 | 1 | 350 | 0.0 | 566 |
| Msa0404260 | AT1G76260.1 | 70.571 | 350 | 103 | 0 | 1 | 350 | 1 | 350 | 0.0 | 531 |
| Msa0404260 | AT1G29260.1 | 26.486 | 185 | 126 | 5 | 100 | 280 | 86 | 264 | 5.53e-12 | 66.2 |
| Msa0404260 | AT2G16780.1 | 22.066 | 213 | 158 | 5 | 128 | 335 | 176 | 385 | 2.94e-11 | 64.7 |
Find 118 sgRNAs with CRISPR-Local
Find 307 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAATCATCTCTCCAGTTT+TGG | 0.158181 | 3_2:+35078514 | Msa0404260:CDS |
| GTGATTTCTATCATATTATT+TGG | 0.172174 | 3_2:+35080675 | Msa0404260:three_prime_UTR |
| GATTATGAAGACAGTATTTA+TGG | 0.189984 | 3_2:+35080112 | Msa0404260:CDS |
| AATTGTTGATTTCTAATCTA+TGG | 0.193483 | 3_2:-35080605 | None:intergenic |
| ACAAGTATGTTGTTCTTTCT+AGG | 0.205190 | 3_2:-35078818 | None:intergenic |
| TCGTCTTGTAGTTTATAAAA+TGG | 0.213244 | 3_2:+35080776 | Msa0404260:three_prime_UTR |
| CTGAAACTTTCCATTCATTC+AGG | 0.222081 | 3_2:+35076205 | Msa0404260:five_prime_UTR |
| AGCTCTTGGATTGGAACTTT+TGG | 0.235539 | 3_2:-35079238 | None:intergenic |
| TTATAAAATGGTACATGAAA+TGG | 0.297176 | 3_2:+35080788 | Msa0404260:three_prime_UTR |
| TTCTTTAAGGCTAAGAGTTC+CGG | 0.300672 | 3_2:-35076449 | None:intergenic |
| TACTACCAAGCAGTATTCTT+TGG | 0.302862 | 3_2:+35077506 | Msa0404260:intron |
| TCTAATCTATGGATGATTCT+TGG | 0.307783 | 3_2:-35080594 | None:intergenic |
| TATTACAGGTACATCTTATT+CGG | 0.313591 | 3_2:+35076554 | Msa0404260:intron |
| TGAAGTCATTATGTAATCTA+TGG | 0.325468 | 3_2:+35080723 | Msa0404260:three_prime_UTR |
| TTCTCAACCGTCTATTCTAA+TGG | 0.326617 | 3_2:+35076673 | Msa0404260:CDS |
| TACTCACCATTTGATCTTAC+CGG | 0.335068 | 3_2:-35077041 | None:intergenic |
| TTATAAACTACAAGACGAAT+TGG | 0.348330 | 3_2:-35080771 | None:intergenic |
| TGGGTTTGATGTTGGTTAAC+AGG | 0.348792 | 3_2:+35080540 | Msa0404260:three_prime_UTR |
| AAACCTATGCTTGTGGAGTT+TGG | 0.356150 | 3_2:+35077573 | Msa0404260:CDS |
| GGTATGATGCACAAGTTATC+TGG | 0.357598 | 3_2:+35078447 | Msa0404260:CDS |
| CTTATTCGGCTTTCGGCAAA+TGG | 0.360330 | 3_2:+35076568 | Msa0404260:CDS |
| TATAAACTACAAGACGAATT+GGG | 0.365585 | 3_2:-35080770 | None:intergenic |
| ATGAGTCAGGGATACACATT+TGG | 0.372896 | 3_2:+35079203 | Msa0404260:CDS |
| GGTACATCTTATTCGGCTTT+CGG | 0.373404 | 3_2:+35076561 | Msa0404260:intron |
| TCGTTCTCACATCCCAAAAC+TGG | 0.382275 | 3_2:-35078527 | None:intergenic |
| GTATCATCTGGTATCGGTTA+TGG | 0.388037 | 3_2:+35076269 | Msa0404260:CDS |
| GTTACAGCAGAGCATGAGTC+AGG | 0.388558 | 3_2:+35079190 | Msa0404260:CDS |
| TTTCACATCCCAATGAGATC+TGG | 0.396774 | 3_2:+35076617 | Msa0404260:CDS |
| GCATCATACCAGCTGAATCT+TGG | 0.397662 | 3_2:-35078434 | None:intergenic |
| TATAAAATGGTACATGAAAT+GGG | 0.399439 | 3_2:+35080789 | Msa0404260:three_prime_UTR |
| ATGGCACCGTAGGGTGTGTT+TGG | 0.407591 | 3_2:-35076155 | None:intergenic |
| TGTCAGTAATTTCCTGCCTC+TGG | 0.411250 | 3_2:+35080472 | Msa0404260:three_prime_UTR |
| AGCAGCAATATGGCAGATTC+CGG | 0.413631 | 3_2:+35076958 | Msa0404260:CDS |
| TGGCAGATTCCGGAGTTATA+TGG | 0.414669 | 3_2:+35076968 | Msa0404260:CDS |
| GAGAAAATGCGCTGATCAAA+AGG | 0.414930 | 3_2:-35076655 | None:intergenic |
| CTCAATCCGGTAAGATCAAA+TGG | 0.419046 | 3_2:+35077035 | Msa0404260:CDS |
| AAACCTATGGAGCAGCAATA+TGG | 0.432581 | 3_2:+35076948 | Msa0404260:CDS |
| CTGCCATATTGCTGCTCCAT+AGG | 0.433808 | 3_2:-35076951 | None:intergenic |
| CATCATACCAGCTGAATCTT+GGG | 0.436579 | 3_2:-35078433 | None:intergenic |
| GTTCCAATCCAAGAGCTTCC+AGG | 0.440106 | 3_2:+35079244 | Msa0404260:CDS |
| CGGTTATGGTCTCAAATATC+AGG | 0.443330 | 3_2:+35076283 | Msa0404260:CDS |
| TGAAACTTTCCATTCATTCA+GGG | 0.444744 | 3_2:+35076206 | Msa0404260:five_prime_UTR |
| AGTATTCTTTGGTGGCCAAC+TGG | 0.446267 | 3_2:+35077517 | Msa0404260:intron |
| AGGATCATTCCGTCATACTC+TGG | 0.448892 | 3_2:-35079561 | None:intergenic |
| ATTTGGATATTTCAGAGTGC+TGG | 0.449472 | 3_2:+35079900 | Msa0404260:intron |
| GGTAATCAACACTGCGGACA+TGG | 0.453337 | 3_2:-35078793 | None:intergenic |
| AGCAGAGTCATCTGTCCGTT+TGG | 0.453401 | 3_2:+35080063 | Msa0404260:CDS |
| AACAAGGTCCCAGATCTCAT+TGG | 0.464387 | 3_2:-35076626 | None:intergenic |
| TTTCAGTTGGTAACTCATCA+TGG | 0.473525 | 3_2:-35079962 | None:intergenic |
| GTTGTTGGTGGGTTTGATGT+TGG | 0.478991 | 3_2:+35080532 | Msa0404260:three_prime_UTR |
| ACAATGCAAGCTGTATCATC+TGG | 0.479446 | 3_2:+35076257 | Msa0404260:exon |
| ACAAGGTCCCAGATCTCATT+GGG | 0.486004 | 3_2:-35076625 | None:intergenic |
| GTGTGTGGCCTGGAAGCTCT+TGG | 0.488370 | 3_2:-35079252 | None:intergenic |
| TGGCCTGGAAGCTCTTGGAT+TGG | 0.492026 | 3_2:-35079247 | None:intergenic |
| CAAGTTATCTGGAGGGGCAT+GGG | 0.493455 | 3_2:+35078458 | Msa0404260:CDS |
| ATACACAACAAGATGACAAA+TGG | 0.494740 | 3_2:-35080450 | None:intergenic |
| TTCACATCCCAATGAGATCT+GGG | 0.498782 | 3_2:+35076618 | Msa0404260:CDS |
| TTGAACTATCCCTGAATGAA+TGG | 0.500065 | 3_2:-35076215 | None:intergenic |
| GTATGTTGTTCTTTCTAGGA+TGG | 0.511077 | 3_2:-35078814 | None:intergenic |
| TGAGTCAGGGATACACATTT+GGG | 0.511412 | 3_2:+35079204 | Msa0404260:CDS |
| CAATCCCTCACAGAAAAGTT+CGG | 0.512341 | 3_2:-35076593 | None:intergenic |
| TACCAAGCAGTATTCTTTGG+TGG | 0.512861 | 3_2:+35077509 | Msa0404260:intron |
| AGAGTATGACGGAATGATCC+TGG | 0.518026 | 3_2:+35079563 | Msa0404260:CDS |
| TAAGAATATGACCTTTCAGT+TGG | 0.519260 | 3_2:-35079975 | None:intergenic |
| CATCTTTGTCCTATGACGGA+AGG | 0.525463 | 3_2:+35080260 | Msa0404260:CDS |
| TATCTCAAGACTCCAGAGGC+AGG | 0.525960 | 3_2:-35080484 | None:intergenic |
| AACGGACAGATGACTCTGCT+TGG | 0.526905 | 3_2:-35080060 | None:intergenic |
| AACAGGATTAGATGTTACAT+TGG | 0.530626 | 3_2:+35080557 | Msa0404260:three_prime_UTR |
| ACATCTCTCGAAACTCAATC+CGG | 0.530946 | 3_2:+35077022 | Msa0404260:CDS |
| GACTCAACATAGTTGTTGGT+GGG | 0.532509 | 3_2:+35080521 | Msa0404260:three_prime_UTR |
| TTCTTTGGTGGCCAACTGGA+AGG | 0.536489 | 3_2:+35077521 | Msa0404260:CDS |
| ACAAGTTATCTGGAGGGGCA+TGG | 0.538022 | 3_2:+35078457 | Msa0404260:CDS |
| GTTGATAAAGGTGAAACCTA+TGG | 0.541143 | 3_2:+35076935 | Msa0404260:intron |
| TAGCCTTAAAGAAGAAAATG+AGG | 0.544050 | 3_2:+35076459 | Msa0404260:CDS |
| CATCCAAACTCCACAAGCAT+AGG | 0.548901 | 3_2:-35077576 | None:intergenic |
| AATTTATCATGCCTTCCAGT+TGG | 0.550107 | 3_2:-35077532 | None:intergenic |
| TTTCATACCATTAGAATAGA+CGG | 0.553561 | 3_2:-35076680 | None:intergenic |
| GTACAATCCCAAGATTCAGC+TGG | 0.553955 | 3_2:+35078426 | Msa0404260:CDS |
| AGGTACCAATGTGTGTGGCC+TGG | 0.555057 | 3_2:-35079262 | None:intergenic |
| TTTGCATCTTTGTCCTATGA+CGG | 0.559496 | 3_2:+35080256 | Msa0404260:CDS |
| GATATTTCAGAGTGCTGGAA+CGG | 0.562762 | 3_2:+35079905 | Msa0404260:intron |
| ACTTCATGAATTACATAACA+TGG | 0.563467 | 3_2:-35080706 | None:intergenic |
| ATAAACTACAAGACGAATTG+GGG | 0.564341 | 3_2:-35080769 | None:intergenic |
| GGATCATTCCGTCATACTCT+GGG | 0.565346 | 3_2:-35079560 | None:intergenic |
| AGACTCAACATAGTTGTTGG+TGG | 0.572934 | 3_2:+35080520 | Msa0404260:three_prime_UTR |
| CATGGAGTTCTCGTCAACCA+TGG | 0.573556 | 3_2:+35080230 | Msa0404260:CDS |
| TGAAGACTCAACATAGTTGT+TGG | 0.580201 | 3_2:+35080517 | Msa0404260:three_prime_UTR |
| CAAGCTGTATCATCTGGTAT+CGG | 0.580366 | 3_2:+35076263 | Msa0404260:CDS |
| GATGTAATTCTCTCTAATTG+AGG | 0.590145 | 3_2:-35077004 | None:intergenic |
| AAAGTTTCAGATACACTGTC+CGG | 0.590541 | 3_2:-35076192 | None:intergenic |
| ATCTTTGTCCTATGACGGAA+GGG | 0.591572 | 3_2:+35080261 | Msa0404260:CDS |
| CTATGGATGATTCTTGGTCA+AGG | 0.595963 | 3_2:-35080588 | None:intergenic |
| GTAATCAACACTGCGGACAT+GGG | 0.601319 | 3_2:-35078792 | None:intergenic |
| AGCTTCCAGGCCACACACAT+TGG | 0.602394 | 3_2:+35079257 | Msa0404260:CDS |
| TTTAACTCGCCATATAACTC+CGG | 0.603669 | 3_2:-35076977 | None:intergenic |
| TAAGCAGTGGATCAACCAAA+CGG | 0.612697 | 3_2:-35080078 | None:intergenic |
| TTGATGTTGAGATTCACACT+TGG | 0.621050 | 3_2:-35080821 | None:intergenic |
| GCTACAGAATTCATGTCATG+TGG | 0.621870 | 3_2:-35078483 | None:intergenic |
| ATGATGCACAAGTTATCTGG+AGG | 0.622737 | 3_2:+35078450 | Msa0404260:CDS |
| ATGATGAGTTACCAACTGAA+AGG | 0.627881 | 3_2:+35079964 | Msa0404260:CDS |
| CGGATTCGACTGTCAACTTG+TGG | 0.630246 | 3_2:+35079925 | Msa0404260:CDS |
| TTACAGCAGAGCATGAGTCA+GGG | 0.635696 | 3_2:+35079191 | Msa0404260:CDS |
| TCACTGTATGTATTAAGCAG+TGG | 0.636494 | 3_2:-35080091 | None:intergenic |
| TTCGACTGTCAACTTGTGGT+CGG | 0.636828 | 3_2:+35079929 | Msa0404260:CDS |
| TGTTTCCAAGAAAACTGCAC+AGG | 0.638150 | 3_2:+35077597 | Msa0404260:CDS |
| ATGATGAAAACCTATGCTTG+TGG | 0.640743 | 3_2:+35077566 | Msa0404260:CDS |
| TGATGCACAAGTTATCTGGA+GGG | 0.643534 | 3_2:+35078451 | Msa0404260:CDS |
| GATCAAAAGGACAAGAAACA+AGG | 0.643986 | 3_2:-35076642 | None:intergenic |
| AAGTGTAACCCAGAGTATGA+CGG | 0.647448 | 3_2:+35079552 | Msa0404260:CDS |
| TCATACAGTGGGAAAAGAAG+CGG | 0.653495 | 3_2:-35080852 | None:intergenic |
| GATGCACAAGTTATCTGGAG+GGG | 0.654578 | 3_2:+35078452 | Msa0404260:CDS |
| GGAGTCTTGAGATAAACAGA+TGG | 0.657500 | 3_2:+35080493 | Msa0404260:three_prime_UTR |
| GATCACACAAGTTTCCTCGC+CGG | 0.658007 | 3_2:+35076430 | Msa0404260:CDS |
| TAACTCATCATGGTTTATCG+AGG | 0.659409 | 3_2:-35079952 | None:intergenic |
| TGTTTATCTCAAGACTCCAG+AGG | 0.679790 | 3_2:-35080488 | None:intergenic |
| TAAGGCTAAGAGTTCCGGCG+AGG | 0.697714 | 3_2:-35076444 | None:intergenic |
| ATGACAGGTACCAATGTGTG+TGG | 0.738267 | 3_2:-35079267 | None:intergenic |
| TAGGATGGTAATCAACACTG+CGG | 0.802826 | 3_2:-35078799 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAATTGGATTAATTAA+TGG | - | chr3_2:35076340-35076359 | None:intergenic | 10.0% |
| !!! | AATACATTAATTTTTATTGA+TGG | + | chr3_2:35079054-35079073 | Msa0404260:intron | 10.0% |
| !!! | ATACATTAATTTTTATTGAT+GGG | + | chr3_2:35079055-35079074 | Msa0404260:intron | 10.0% |
| !! | TTTAATGAAATAAAAAAAGT+AGG | - | chr3_2:35079434-35079453 | None:intergenic | 10.0% |
| !! | TTAACAAAAAAAAAACTACT+TGG | - | chr3_2:35078698-35078717 | None:intergenic | 15.0% |
| !! | ATATTATAAAACCAAATAGA+AGG | - | chr3_2:35078891-35078910 | None:intergenic | 15.0% |
| !! | AAAGAAAATAAACTATTTGA+TGG | + | chr3_2:35079462-35079481 | Msa0404260:intron | 15.0% |
| !! | AAATTATATGTCATTGAATT+TGG | + | chr3_2:35079883-35079902 | Msa0404260:intron | 15.0% |
| !!! | TCAATTTTTATTCATTTTAC+AGG | + | chr3_2:35080202-35080221 | Msa0404260:intron | 15.0% |
| !!! | CAATTTTTATTCATTTTACA+GGG | + | chr3_2:35080203-35080222 | Msa0404260:intron | 15.0% |
| !! | TTATTTAGATCAGTTTATTT+GGG | - | chr3_2:35080342-35080361 | None:intergenic | 15.0% |
| !!! | ATTAGAAATCAACAATTTTT+TGG | + | chr3_2:35080611-35080630 | Msa0404260:three_prime_UTR | 15.0% |
| !! | TTAAAGGGAATGATAATAAT+TGG | - | chr3_2:35076352-35076371 | None:intergenic | 20.0% |
| !!! | TTTTTGCTTATAATAGTGAT+CGG | - | chr3_2:35077106-35077125 | None:intergenic | 20.0% |
| !! | CATTTAATAAATGATGTATG+TGG | - | chr3_2:35077179-35077198 | None:intergenic | 20.0% |
| !!! | TAAGCAAAATTTGACTTTTT+AGG | - | chr3_2:35077204-35077223 | None:intergenic | 20.0% |
| !! | ATAACAAACATATACTAAAG+AGG | - | chr3_2:35077446-35077465 | None:intergenic | 20.0% |
| !!! | GTTTGTTATTCACATTTATA+CGG | + | chr3_2:35077457-35077476 | Msa0404260:intron | 20.0% |
| !!! | CTGATATGTATTTTCTTTTT+TGG | - | chr3_2:35077728-35077747 | None:intergenic | 20.0% |
| !!! | TTTAAAATACAATAGTGAAG+AGG | + | chr3_2:35077921-35077940 | Msa0404260:intron | 20.0% |
| !! | TGTTCATAAATATCAATTAC+AGG | - | chr3_2:35077962-35077981 | None:intergenic | 20.0% |
| !!! | TCAAACAACATTTTAAGATT+CGG | - | chr3_2:35078007-35078026 | None:intergenic | 20.0% |
| !! | CAATGAGTAATTTACTTAAA+TGG | - | chr3_2:35078622-35078641 | None:intergenic | 20.0% |
| !! | AATTGGATTATTTAAATCAC+AGG | + | chr3_2:35078747-35078766 | Msa0404260:intron | 20.0% |
| !! | ATGAAATAAAAAAAGTAGGT+AGG | - | chr3_2:35079430-35079449 | None:intergenic | 20.0% |
| !! | ATATCACACACAAATAAATA+CGG | + | chr3_2:35079698-35079717 | Msa0404260:intron | 20.0% |
| !! | TATTTAGATCAGTTTATTTG+GGG | - | chr3_2:35080341-35080360 | None:intergenic | 20.0% |
| !! | GTTATTTAGATCAGTTTATT+TGG | - | chr3_2:35080343-35080362 | None:intergenic | 20.0% |
| !!! | AATTGTTGATTTCTAATCTA+TGG | - | chr3_2:35080608-35080627 | None:intergenic | 20.0% |
| !! | GTGATTTCTATCATATTATT+TGG | + | chr3_2:35080675-35080694 | Msa0404260:three_prime_UTR | 20.0% |
| !! | TTATAAAATGGTACATGAAA+TGG | + | chr3_2:35080788-35080807 | Msa0404260:three_prime_UTR | 20.0% |
| !! | TATAAAATGGTACATGAAAT+GGG | + | chr3_2:35080789-35080808 | Msa0404260:three_prime_UTR | 20.0% |
| ! | CAATCAAAACAGTGATTAAA+GGG | - | chr3_2:35076367-35076386 | None:intergenic | 25.0% |
| ! | ACAATCAAAACAGTGATTAA+AGG | - | chr3_2:35076368-35076387 | None:intergenic | 25.0% |
| ! | TATTACAGGTACATCTTATT+CGG | + | chr3_2:35076554-35076573 | Msa0404260:intron | 25.0% |
| ! | TTTCATACCATTAGAATAGA+CGG | - | chr3_2:35076683-35076702 | None:intergenic | 25.0% |
| !!! | TTACCTTTTGTTGTTGATAA+AGG | + | chr3_2:35076923-35076942 | Msa0404260:intron | 25.0% |
| ! | CATTCAATAAATGATGTATG+TGG | + | chr3_2:35077141-35077160 | Msa0404260:intron | 25.0% |
| !! | ATTTTGCTTATAATAGTGAC+CGG | + | chr3_2:35077214-35077233 | Msa0404260:intron | 25.0% |
| !!! | ATAACATACATGTGTTTTTG+TGG | - | chr3_2:35077674-35077693 | None:intergenic | 25.0% |
| !! | TTATTATTCAAGTTACCGTT+AGG | + | chr3_2:35077765-35077784 | Msa0404260:intron | 25.0% |
| !! | TAAAATGTTGTTTGAATGAG+AGG | + | chr3_2:35078012-35078031 | Msa0404260:intron | 25.0% |
| ! | ATGCAAATTAAACTCTTACA+GGG | - | chr3_2:35078183-35078202 | None:intergenic | 25.0% |
| ! | TATGCAAATTAAACTCTTAC+AGG | - | chr3_2:35078184-35078203 | None:intergenic | 25.0% |
| !!! | TGTAAGAGTTTAATTTGCAT+AGG | + | chr3_2:35078183-35078202 | Msa0404260:intron | 25.0% |
| !! | TCCTAAATTCATTCTTTTAC+TGG | + | chr3_2:35078560-35078579 | Msa0404260:intron | 25.0% |
| ! | ACCAGTAAAAGAATGAATTT+AGG | - | chr3_2:35078564-35078583 | None:intergenic | 25.0% |
| ! | GAGTAATTTACTTAAATGGA+AGG | - | chr3_2:35078618-35078637 | None:intergenic | 25.0% |
| !! | AAAAAAACTACTTGGTTTGA+GGG | - | chr3_2:35078690-35078709 | None:intergenic | 25.0% |
| !! | AAAAAAAACTACTTGGTTTG+AGG | - | chr3_2:35078691-35078710 | None:intergenic | 25.0% |
| !! | AAACCAAATAGAAGGTATAA+AGG | - | chr3_2:35078883-35078902 | None:intergenic | 25.0% |
| ! | ATTCACCCAATGATATAATA+TGG | + | chr3_2:35078950-35078969 | Msa0404260:intron | 25.0% |
| ! | CCAATCCATATTATATCATT+GGG | - | chr3_2:35078958-35078977 | None:intergenic | 25.0% |
| !!! | AATTAATGTATTTTGACGCT+AGG | - | chr3_2:35079046-35079065 | None:intergenic | 25.0% |
| !! | TGAATTGCTATGTTATTTAC+AGG | + | chr3_2:35079168-35079187 | Msa0404260:intron | 25.0% |
| ! | TAGGTTATTTGTGCATTAAA+AGG | - | chr3_2:35079411-35079430 | None:intergenic | 25.0% |
| !!! | TAAAAAAAAGTTTGTTGCAG+AGG | - | chr3_2:35079732-35079751 | None:intergenic | 25.0% |
| !!! | TCTGCAACAAACTTTTTTTT+AGG | + | chr3_2:35079731-35079750 | Msa0404260:intron | 25.0% |
| !!! | CTGCAACAAACTTTTTTTTA+GGG | + | chr3_2:35079732-35079751 | Msa0404260:intron | 25.0% |
| ! | GATTATGAAGACAGTATTTA+TGG | + | chr3_2:35080112-35080131 | Msa0404260:CDS | 25.0% |
| ! | AATCTTATTGCTTACATGTT+TGG | + | chr3_2:35080298-35080317 | Msa0404260:intron | 25.0% |
| ! | ATCTTATTGCTTACATGTTT+GGG | + | chr3_2:35080299-35080318 | Msa0404260:intron | 25.0% |
| ! | ATTTAGATCAGTTTATTTGG+GGG | - | chr3_2:35080340-35080359 | None:intergenic | 25.0% |
| !!! | TGATGTTGAACATCATTTTT+TGG | - | chr3_2:35080416-35080435 | None:intergenic | 25.0% |
| ! | ACTTCATGAATTACATAACA+TGG | - | chr3_2:35080709-35080728 | None:intergenic | 25.0% |
| ! | TGAAGTCATTATGTAATCTA+TGG | + | chr3_2:35080723-35080742 | Msa0404260:three_prime_UTR | 25.0% |
| ! | TATAAACTACAAGACGAATT+GGG | - | chr3_2:35080773-35080792 | None:intergenic | 25.0% |
| ! | TTATAAACTACAAGACGAAT+TGG | - | chr3_2:35080774-35080793 | None:intergenic | 25.0% |
| ! | TCGTCTTGTAGTTTATAAAA+TGG | + | chr3_2:35080776-35080795 | Msa0404260:three_prime_UTR | 25.0% |
| TGAAACTTTCCATTCATTCA+GGG | + | chr3_2:35076206-35076225 | Msa0404260:five_prime_UTR | 30.0% | |
| GAGTGGTAATAATGAGAATT+GGG | - | chr3_2:35076316-35076335 | None:intergenic | 30.0% | |
| AGAGTGGTAATAATGAGAAT+TGG | - | chr3_2:35076317-35076336 | None:intergenic | 30.0% | |
| TTGGATTAATTAATGGAGAG+TGG | - | chr3_2:35076333-35076352 | None:intergenic | 30.0% | |
| ! | TAGCCTTAAAGAAGAAAATG+AGG | + | chr3_2:35076459-35076478 | Msa0404260:CDS | 30.0% |
| ! | GTACCTCATTTTCTTCTTTA+AGG | - | chr3_2:35076465-35076484 | None:intergenic | 30.0% |
| AAATCCGATGAAAACTGAAT+TGG | - | chr3_2:35076503-35076522 | None:intergenic | 30.0% | |
| TCGTTACATCACATTATTAC+AGG | + | chr3_2:35076540-35076559 | Msa0404260:intron | 30.0% | |
| CAATAAGCACAAACTATCTA+TGG | - | chr3_2:35076730-35076749 | None:intergenic | 30.0% | |
| TCACCTTTATCAACAACAAA+AGG | - | chr3_2:35076929-35076948 | None:intergenic | 30.0% | |
| GATGTAATTCTCTCTAATTG+AGG | - | chr3_2:35077007-35077026 | None:intergenic | 30.0% | |
| AAACGAAGAAATCTGCAAAA+GGG | - | chr3_2:35077074-35077093 | None:intergenic | 30.0% | |
| TAAACGAAGAAATCTGCAAA+AGG | - | chr3_2:35077075-35077094 | None:intergenic | 30.0% | |
| ATTTCTCTATTTCACACTGT+TGG | + | chr3_2:35077368-35077387 | Msa0404260:intron | 30.0% | |
| TGGTTTATTATGACACCTAA+CGG | - | chr3_2:35077783-35077802 | None:intergenic | 30.0% | |
| !! | GTAGGAAAACATGTTGATTT+GGG | + | chr3_2:35077827-35077846 | Msa0404260:intron | 30.0% |
| CAAGAACAGATAATCTTTCA+TGG | - | chr3_2:35077862-35077881 | None:intergenic | 30.0% | |
| GGATTACATATTGTCCATAA+GGG | + | chr3_2:35078144-35078163 | Msa0404260:intron | 30.0% | |
| GAACAAAATTAGATCCCTTA+TGG | - | chr3_2:35078161-35078180 | None:intergenic | 30.0% | |
| GTATAAAACTTTGTGGTGTT+TGG | - | chr3_2:35078249-35078268 | None:intergenic | 30.0% | |
| AAACCTCGTATAAAACTTTG+TGG | - | chr3_2:35078256-35078275 | None:intergenic | 30.0% | |
| ! | GTTTTATACGAGGTTTCATT+AGG | + | chr3_2:35078260-35078279 | Msa0404260:intron | 30.0% |
| !!! | GTCACTGCTTTTTTAAAATC+TGG | + | chr3_2:35078334-35078353 | Msa0404260:intron | 30.0% |
| !!! | ACTGCTTTTTTAAAATCTGG+TGG | + | chr3_2:35078337-35078356 | Msa0404260:intron | 30.0% |
| !! | TGTTGTTTGTATGTTTTGAG+AGG | - | chr3_2:35078397-35078416 | None:intergenic | 30.0% |
| CATACAAACAACAAAAACCT+AGG | + | chr3_2:35078404-35078423 | Msa0404260:intron | 30.0% | |
| ! | TTTTGTTAATCAGTACCTGT+TGG | + | chr3_2:35078709-35078728 | Msa0404260:intron | 30.0% |
| GGAATTTCATGTCTACTAAT+TGG | + | chr3_2:35078730-35078749 | Msa0404260:intron | 30.0% | |
| ACAAGTATGTTGTTCTTTCT+AGG | - | chr3_2:35078821-35078840 | None:intergenic | 30.0% | |
| ATGCCTTTATACCTTCTATT+TGG | + | chr3_2:35078877-35078896 | Msa0404260:intron | 30.0% | |
| TATAATATCTGTGTCTGAGA+TGG | + | chr3_2:35078903-35078922 | Msa0404260:intron | 30.0% | |
| CCCAATGATATAATATGGAT+TGG | + | chr3_2:35078955-35078974 | Msa0404260:intron | 30.0% | |
| GCCAATCCATATTATATCAT+TGG | - | chr3_2:35078959-35078978 | None:intergenic | 30.0% | |
| !! | GCTTTAAAACTATACATGAC+AGG | - | chr3_2:35079285-35079304 | None:intergenic | 30.0% |
| AAGAGAAAAGAAAGTAGAAC+AGG | + | chr3_2:35079341-35079360 | Msa0404260:intron | 30.0% | |
| TATGTATTACTTGTATTGCC+AGG | + | chr3_2:35079517-35079536 | Msa0404260:intron | 30.0% | |
| ACACAAATAAATACGGACAA+GGG | + | chr3_2:35079705-35079724 | Msa0404260:intron | 30.0% | |
| TAAGAATATGACCTTTCAGT+TGG | - | chr3_2:35079978-35079997 | None:intergenic | 30.0% | |
| GACATAGTCTATAAAGATCA+TGG | - | chr3_2:35080179-35080198 | None:intergenic | 30.0% | |
| !! | AACCACTTTACTTTTCAAAC+AGG | + | chr3_2:35080360-35080379 | Msa0404260:intron | 30.0% |
| !!! | CATCATTTTTTGGAGATGAA+AGG | - | chr3_2:35080406-35080425 | None:intergenic | 30.0% |
| ATACACAACAAGATGACAAA+TGG | - | chr3_2:35080453-35080472 | None:intergenic | 30.0% | |
| AACAGGATTAGATGTTACAT+TGG | + | chr3_2:35080557-35080576 | Msa0404260:three_prime_UTR | 30.0% | |
| TCTAATCTATGGATGATTCT+TGG | - | chr3_2:35080597-35080616 | None:intergenic | 30.0% | |
| ATAAACTACAAGACGAATTG+GGG | - | chr3_2:35080772-35080791 | None:intergenic | 30.0% | |
| AAAGTTTCAGATACACTGTC+CGG | - | chr3_2:35076195-35076214 | None:intergenic | 35.0% | |
| CTGAAACTTTCCATTCATTC+AGG | + | chr3_2:35076205-35076224 | Msa0404260:five_prime_UTR | 35.0% | |
| TTGAACTATCCCTGAATGAA+TGG | - | chr3_2:35076218-35076237 | None:intergenic | 35.0% | |
| !!! | CTGTTTTGATTGTCTTGTCT+AGG | + | chr3_2:35076375-35076394 | Msa0404260:intron | 35.0% |
| !! | TTCTTTAAGGCTAAGAGTTC+CGG | - | chr3_2:35076452-35076471 | None:intergenic | 35.0% |
| ! | TGCTCCAATTCAGTTTTCAT+CGG | + | chr3_2:35076496-35076515 | Msa0404260:intron | 35.0% |
| GATCAAAAGGACAAGAAACA+AGG | - | chr3_2:35076645-35076664 | None:intergenic | 35.0% | |
| TTCTCAACCGTCTATTCTAA+TGG | + | chr3_2:35076673-35076692 | Msa0404260:CDS | 35.0% | |
| TTACTGTTTGAGAGAGCTTA+TGG | + | chr3_2:35076764-35076783 | Msa0404260:intron | 35.0% | |
| TACTGTTTGAGAGAGCTTAT+GGG | + | chr3_2:35076765-35076784 | Msa0404260:intron | 35.0% | |
| AAGCTATCATAGACAGCTTA+TGG | - | chr3_2:35076808-35076827 | None:intergenic | 35.0% | |
| ! | GTTGATAAAGGTGAAACCTA+TGG | + | chr3_2:35076935-35076954 | Msa0404260:intron | 35.0% |
| TTTAACTCGCCATATAACTC+CGG | - | chr3_2:35076980-35076999 | None:intergenic | 35.0% | |
| TACTCACCATTTGATCTTAC+CGG | - | chr3_2:35077044-35077063 | None:intergenic | 35.0% | |
| TGCTTATAATAGTGATCGGA+GGG | - | chr3_2:35077102-35077121 | None:intergenic | 35.0% | |
| TTGCTTATAATAGTGATCGG+AGG | - | chr3_2:35077103-35077122 | None:intergenic | 35.0% | |
| TACTACCAAGCAGTATTCTT+TGG | + | chr3_2:35077506-35077525 | Msa0404260:intron | 35.0% | |
| AATTTATCATGCCTTCCAGT+TGG | - | chr3_2:35077535-35077554 | None:intergenic | 35.0% | |
| ATGATGAAAACCTATGCTTG+TGG | + | chr3_2:35077566-35077585 | Msa0404260:CDS | 35.0% | |
| ! | GGTAGGAAAACATGTTGATT+TGG | + | chr3_2:35077826-35077845 | Msa0404260:intron | 35.0% |
| !! | AAAACATGTTGATTTGGGAG+AGG | + | chr3_2:35077832-35077851 | Msa0404260:intron | 35.0% |
| GAGTCTAGAGAGAAACTATT+TGG | - | chr3_2:35077895-35077914 | None:intergenic | 35.0% | |
| ATAGTTTCTCTCTAGACTCT+AGG | + | chr3_2:35077896-35077915 | Msa0404260:intron | 35.0% | |
| !!! | AGAGGCATTTTAGAAAACGA+AGG | + | chr3_2:35078030-35078049 | Msa0404260:intron | 35.0% |
| !! | GAGGCATTTTAGAAAACGAA+GGG | + | chr3_2:35078031-35078050 | Msa0404260:intron | 35.0% |
| ! | CTGTTGATGAGTGAAGATAT+TGG | + | chr3_2:35078054-35078073 | Msa0404260:intron | 35.0% |
| AGTTGTTTGGAGAAATCCAT+TGG | - | chr3_2:35078080-35078099 | None:intergenic | 35.0% | |
| GTGGCTTATATCATAAACTG+TGG | - | chr3_2:35078117-35078136 | None:intergenic | 35.0% | |
| ATGATATAAGCCACTGAGAA+CGG | + | chr3_2:35078123-35078142 | Msa0404260:intron | 35.0% | |
| AATATGTAATCCGTTCTCAG+TGG | - | chr3_2:35078136-35078155 | None:intergenic | 35.0% | |
| CGGATTACATATTGTCCATA+AGG | + | chr3_2:35078143-35078162 | Msa0404260:intron | 35.0% | |
| !! | TGTTTGGCTTGCATTAAGAA+TGG | - | chr3_2:35078233-35078252 | None:intergenic | 35.0% |
| !! | ACACCACAAAGTTTTATACG+AGG | + | chr3_2:35078250-35078269 | Msa0404260:intron | 35.0% |
| TTTCATTAGGACCTAAGATC+TGG | + | chr3_2:35078273-35078292 | Msa0404260:intron | 35.0% | |
| TTCATTAGGACCTAAGATCT+GGG | + | chr3_2:35078274-35078293 | Msa0404260:intron | 35.0% | |
| AGCAGTGACTATCAACATAA+AGG | - | chr3_2:35078323-35078342 | None:intergenic | 35.0% | |
| !!! | GTTTGTATGTTTTGAGAGGA+GGG | - | chr3_2:35078393-35078412 | None:intergenic | 35.0% |
| !!! | TGTTTGTATGTTTTGAGAGG+AGG | - | chr3_2:35078394-35078413 | None:intergenic | 35.0% |
| ! | TGAATCATCTCTCCAGTTTT+GGG | + | chr3_2:35078515-35078534 | Msa0404260:CDS | 35.0% |
| !! | ACTCATTGCATTTCAAGTTC+AGG | + | chr3_2:35078634-35078653 | Msa0404260:intron | 35.0% |
| AGTAGACATGAAATTCCAAC+AGG | - | chr3_2:35078727-35078746 | None:intergenic | 35.0% | |
| ! | GTATGTTGTTCTTTCTAGGA+TGG | - | chr3_2:35078817-35078836 | None:intergenic | 35.0% |
| !! | TTCCCATTTGTTGTTACGAT+CGG | + | chr3_2:35079385-35079404 | Msa0404260:intron | 35.0% |
| CACACAAATAAATACGGACA+AGG | + | chr3_2:35079704-35079723 | Msa0404260:intron | 35.0% | |
| TTTATCTCAATCCTGAGCAA+GGG | - | chr3_2:35079766-35079785 | None:intergenic | 35.0% | |
| ATTTGGATATTTCAGAGTGC+TGG | + | chr3_2:35079900-35079919 | Msa0404260:intron | 35.0% | |
| TAACTCATCATGGTTTATCG+AGG | - | chr3_2:35079955-35079974 | None:intergenic | 35.0% | |
| !! | TTTCAGTTGGTAACTCATCA+TGG | - | chr3_2:35079965-35079984 | None:intergenic | 35.0% |
| ATGATGAGTTACCAACTGAA+AGG | + | chr3_2:35079964-35079983 | Msa0404260:CDS | 35.0% | |
| TTCATCTTTGCTCGCATATT+TGG | + | chr3_2:35080034-35080053 | Msa0404260:intron | 35.0% | |
| TCACTGTATGTATTAAGCAG+TGG | - | chr3_2:35080094-35080113 | None:intergenic | 35.0% | |
| GTATTTATGGTAAGAGCTTC+TGG | + | chr3_2:35080125-35080144 | Msa0404260:intron | 35.0% | |
| ! | TTCATTTTACAGGGCTTACA+TGG | + | chr3_2:35080212-35080231 | Msa0404260:intron | 35.0% |
| GACAAAGATGCAAAAATCCA+TGG | - | chr3_2:35080250-35080269 | None:intergenic | 35.0% | |
| TTTGCATCTTTGTCCTATGA+CGG | + | chr3_2:35080256-35080275 | Msa0404260:CDS | 35.0% | |
| CACCTGTTTGAAAAGTAAAG+TGG | - | chr3_2:35080365-35080384 | None:intergenic | 35.0% | |
| !! | CACTTTACTTTTCAAACAGG+TGG | + | chr3_2:35080363-35080382 | Msa0404260:intron | 35.0% |
| TGAAGACTCAACATAGTTGT+TGG | + | chr3_2:35080517-35080536 | Msa0404260:three_prime_UTR | 35.0% | |
| TTGATGTTGAGATTCACACT+TGG | - | chr3_2:35080824-35080843 | None:intergenic | 35.0% | |
| !!! | GCCATTTTTGGGTTTAACTC+CGG | + | chr3_2:35076173-35076192 | Msa0404260:five_prime_UTR | 40.0% |
| TCCGGAGTTAAACCCAAAAA+TGG | - | chr3_2:35076177-35076196 | None:intergenic | 40.0% | |
| ACAATGCAAGCTGTATCATC+TGG | + | chr3_2:35076257-35076276 | Msa0404260:exon | 40.0% | |
| CAAGCTGTATCATCTGGTAT+CGG | + | chr3_2:35076263-35076282 | Msa0404260:CDS | 40.0% | |
| !! | GTATCATCTGGTATCGGTTA+TGG | + | chr3_2:35076269-35076288 | Msa0404260:CDS | 40.0% |
| CGGTTATGGTCTCAAATATC+AGG | + | chr3_2:35076283-35076302 | Msa0404260:CDS | 40.0% | |
| GGTACATCTTATTCGGCTTT+CGG | + | chr3_2:35076561-35076580 | Msa0404260:intron | 40.0% | |
| CAATCCCTCACAGAAAAGTT+CGG | - | chr3_2:35076596-35076615 | None:intergenic | 40.0% | |
| TTTCACATCCCAATGAGATC+TGG | + | chr3_2:35076617-35076636 | Msa0404260:CDS | 40.0% | |
| TTCACATCCCAATGAGATCT+GGG | + | chr3_2:35076618-35076637 | Msa0404260:CDS | 40.0% | |
| ! | GAGAAAATGCGCTGATCAAA+AGG | - | chr3_2:35076658-35076677 | None:intergenic | 40.0% |
| AAACCTATGGAGCAGCAATA+TGG | + | chr3_2:35076948-35076967 | Msa0404260:CDS | 40.0% | |
| ACATCTCTCGAAACTCAATC+CGG | + | chr3_2:35077022-35077041 | Msa0404260:CDS | 40.0% | |
| CTCAATCCGGTAAGATCAAA+TGG | + | chr3_2:35077035-35077054 | Msa0404260:CDS | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | + | chr3_2:35077217-35077236 | Msa0404260:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | + | chr3_2:35077218-35077237 | Msa0404260:intron | 40.0% | |
| ! | CACTGTTGGACTACTCTTTT+TGG | + | chr3_2:35077382-35077401 | Msa0404260:intron | 40.0% |
| TACCAAGCAGTATTCTTTGG+TGG | + | chr3_2:35077509-35077528 | Msa0404260:intron | 40.0% | |
| AAACCTATGCTTGTGGAGTT+TGG | + | chr3_2:35077573-35077592 | Msa0404260:CDS | 40.0% | |
| TGTTTCCAAGAAAACTGCAC+AGG | + | chr3_2:35077597-35077616 | Msa0404260:CDS | 40.0% | |
| AAATGAACCCTTACCACGAA+GGG | + | chr3_2:35077805-35077824 | Msa0404260:intron | 40.0% | |
| TGAGTGAAGATATTGGCCAA+TGG | + | chr3_2:35078061-35078080 | Msa0404260:intron | 40.0% | |
| ATCACAGGCTAACAGTTGTT+TGG | - | chr3_2:35078093-35078112 | None:intergenic | 40.0% | |
| ATCATAAACTGTGGCATCAC+AGG | - | chr3_2:35078108-35078127 | None:intergenic | 40.0% | |
| TCATTAGGACCTAAGATCTG+GGG | + | chr3_2:35078275-35078294 | Msa0404260:intron | 40.0% | |
| TGAATCTTGGGATTGTACCT+AGG | - | chr3_2:35078424-35078443 | None:intergenic | 40.0% | |
| CATCATACCAGCTGAATCTT+GGG | - | chr3_2:35078436-35078455 | None:intergenic | 40.0% | |
| GGTATGATGCACAAGTTATC+TGG | + | chr3_2:35078447-35078466 | Msa0404260:CDS | 40.0% | |
| ATGATGCACAAGTTATCTGG+AGG | + | chr3_2:35078450-35078469 | Msa0404260:CDS | 40.0% | |
| TGATGCACAAGTTATCTGGA+GGG | + | chr3_2:35078451-35078470 | Msa0404260:CDS | 40.0% | |
| GCTACAGAATTCATGTCATG+TGG | - | chr3_2:35078486-35078505 | None:intergenic | 40.0% | |
| ! | CTGAATCATCTCTCCAGTTT+TGG | + | chr3_2:35078514-35078533 | Msa0404260:CDS | 40.0% |
| !! | TGCATTTCAAGTTCAGGATC+TGG | + | chr3_2:35078640-35078659 | Msa0404260:intron | 40.0% |
| TAGGATGGTAATCAACACTG+CGG | - | chr3_2:35078802-35078821 | None:intergenic | 40.0% | |
| AGGCATGTATCAGTAGAATG+AGG | - | chr3_2:35078863-35078882 | None:intergenic | 40.0% | |
| CAACGTCTTTGTGTTCATGT+TGG | + | chr3_2:35079139-35079158 | Msa0404260:intron | 40.0% | |
| ATGAGTCAGGGATACACATT+TGG | + | chr3_2:35079203-35079222 | Msa0404260:CDS | 40.0% | |
| TGAGTCAGGGATACACATTT+GGG | + | chr3_2:35079204-35079223 | Msa0404260:CDS | 40.0% | |
| !! | AGCTCTTGGATTGGAACTTT+TGG | - | chr3_2:35079241-35079260 | None:intergenic | 40.0% |
| TTACTTGTATTGCCAGGACA+TGG | + | chr3_2:35079523-35079542 | Msa0404260:intron | 40.0% | |
| AAGTGTAACCCAGAGTATGA+CGG | + | chr3_2:35079552-35079571 | Msa0404260:CDS | 40.0% | |
| GTTTATCTCAATCCTGAGCA+AGG | - | chr3_2:35079767-35079786 | None:intergenic | 40.0% | |
| !! | GATATTTCAGAGTGCTGGAA+CGG | + | chr3_2:35079905-35079924 | Msa0404260:intron | 40.0% |
| TAAGCAGTGGATCAACCAAA+CGG | - | chr3_2:35080081-35080100 | None:intergenic | 40.0% | |
| ! | ATCTTTGTCCTATGACGGAA+GGG | + | chr3_2:35080261-35080280 | Msa0404260:CDS | 40.0% |
| ! | TTTTCTTACCCTTCCGTCAT+AGG | - | chr3_2:35080272-35080291 | None:intergenic | 40.0% |
| TGTTTATCTCAAGACTCCAG+AGG | - | chr3_2:35080491-35080510 | None:intergenic | 40.0% | |
| GGAGTCTTGAGATAAACAGA+TGG | + | chr3_2:35080493-35080512 | Msa0404260:three_prime_UTR | 40.0% | |
| AGACTCAACATAGTTGTTGG+TGG | + | chr3_2:35080520-35080539 | Msa0404260:three_prime_UTR | 40.0% | |
| GACTCAACATAGTTGTTGGT+GGG | + | chr3_2:35080521-35080540 | Msa0404260:three_prime_UTR | 40.0% | |
| ! | TGGGTTTGATGTTGGTTAAC+AGG | + | chr3_2:35080540-35080559 | Msa0404260:three_prime_UTR | 40.0% |
| CTATGGATGATTCTTGGTCA+AGG | - | chr3_2:35080591-35080610 | None:intergenic | 40.0% | |
| AACCCAAAAATGGCACCGTA+GGG | - | chr3_2:35076167-35076186 | None:intergenic | 45.0% | |
| AAACCCAAAAATGGCACCGT+AGG | - | chr3_2:35076168-35076187 | None:intergenic | 45.0% | |
| CTTATTCGGCTTTCGGCAAA+TGG | + | chr3_2:35076568-35076587 | Msa0404260:CDS | 45.0% | |
| ! | TGGAACCGAACTTTTCTGTG+AGG | + | chr3_2:35076588-35076607 | Msa0404260:CDS | 45.0% |
| ! | GGAACCGAACTTTTCTGTGA+GGG | + | chr3_2:35076589-35076608 | Msa0404260:CDS | 45.0% |
| ACAAGGTCCCAGATCTCATT+GGG | - | chr3_2:35076628-35076647 | None:intergenic | 45.0% | |
| AACAAGGTCCCAGATCTCAT+TGG | - | chr3_2:35076629-35076648 | None:intergenic | 45.0% | |
| AGCAGCAATATGGCAGATTC+CGG | + | chr3_2:35076958-35076977 | Msa0404260:CDS | 45.0% | |
| TGGCAGATTCCGGAGTTATA+TGG | + | chr3_2:35076968-35076987 | Msa0404260:CDS | 45.0% | |
| GTGCAAAACAATACTCCCTC+CGG | - | chr3_2:35077236-35077255 | None:intergenic | 45.0% | |
| TCAGGCAATGAGACAGTCTA+TGG | - | chr3_2:35077270-35077289 | None:intergenic | 45.0% | |
| ATAGACTGTCTCATTGCCTG+AGG | + | chr3_2:35077269-35077288 | Msa0404260:intron | 45.0% | |
| TGTCTCATTGCCTGAGGTTT+AGG | + | chr3_2:35077275-35077294 | Msa0404260:intron | 45.0% | |
| CTGACAACTTCCTAAACCTC+AGG | - | chr3_2:35077288-35077307 | None:intergenic | 45.0% | |
| GAAGTTGTCAGAAGACGTTG+AGG | + | chr3_2:35077297-35077316 | Msa0404260:intron | 45.0% | |
| ! | AGTATTCTTTGGTGGCCAAC+TGG | + | chr3_2:35077517-35077536 | Msa0404260:intron | 45.0% |
| CATCCAAACTCCACAAGCAT+AGG | - | chr3_2:35077579-35077598 | None:intergenic | 45.0% | |
| ! | TCGTACCTGTGCAGTTTTCT+TGG | - | chr3_2:35077605-35077624 | None:intergenic | 45.0% |
| CTGCACAGGTACGAAGTTTA+TGG | + | chr3_2:35077611-35077630 | Msa0404260:intron | 45.0% | |
| CGTGGTAAGGGTTCATTTGT+TGG | - | chr3_2:35077803-35077822 | None:intergenic | 45.0% | |
| CAAATGAACCCTTACCACGA+AGG | + | chr3_2:35077804-35077823 | Msa0404260:intron | 45.0% | |
| TTTCCTACCCTTCGTGGTAA+GGG | - | chr3_2:35077815-35077834 | None:intergenic | 45.0% | |
| ! | TTTTCCTACCCTTCGTGGTA+AGG | - | chr3_2:35077816-35077835 | None:intergenic | 45.0% |
| ! | ACATGTTTTCCTACCCTTCG+TGG | - | chr3_2:35077821-35077840 | None:intergenic | 45.0% |
| !!! | TGTATGTTTTGAGAGGAGGG+TGG | - | chr3_2:35078390-35078409 | None:intergenic | 45.0% |
| GTACAATCCCAAGATTCAGC+TGG | + | chr3_2:35078426-35078445 | Msa0404260:CDS | 45.0% | |
| GCATCATACCAGCTGAATCT+TGG | - | chr3_2:35078437-35078456 | None:intergenic | 45.0% | |
| GATGCACAAGTTATCTGGAG+GGG | + | chr3_2:35078452-35078471 | Msa0404260:CDS | 45.0% | |
| TCGTTCTCACATCCCAAAAC+TGG | - | chr3_2:35078530-35078549 | None:intergenic | 45.0% | |
| GTAATCAACACTGCGGACAT+GGG | - | chr3_2:35078795-35078814 | None:intergenic | 45.0% | |
| TTACAGCAGAGCATGAGTCA+GGG | + | chr3_2:35079191-35079210 | Msa0404260:CDS | 45.0% | |
| ATGACAGGTACCAATGTGTG+TGG | - | chr3_2:35079270-35079289 | None:intergenic | 45.0% | |
| GGCCGATCGTAACAACAAAT+GGG | - | chr3_2:35079390-35079409 | None:intergenic | 45.0% | |
| AGGCCGATCGTAACAACAAA+TGG | - | chr3_2:35079391-35079410 | None:intergenic | 45.0% | |
| ACACTTGACAATCCATGTCC+TGG | - | chr3_2:35079538-35079557 | None:intergenic | 45.0% | |
| GGATCATTCCGTCATACTCT+GGG | - | chr3_2:35079563-35079582 | None:intergenic | 45.0% | |
| AGGATCATTCCGTCATACTC+TGG | - | chr3_2:35079564-35079583 | None:intergenic | 45.0% | |
| ! | AGAGTATGACGGAATGATCC+TGG | + | chr3_2:35079563-35079582 | Msa0404260:CDS | 45.0% |
| TTCGACTGTCAACTTGTGGT+CGG | + | chr3_2:35079929-35079948 | Msa0404260:CDS | 45.0% | |
| ! | CATCTTTGTCCTATGACGGA+AGG | + | chr3_2:35080260-35080279 | Msa0404260:CDS | 45.0% |
| TGTCAGTAATTTCCTGCCTC+TGG | + | chr3_2:35080472-35080491 | Msa0404260:three_prime_UTR | 45.0% | |
| !! | GTTGTTGGTGGGTTTGATGT+TGG | + | chr3_2:35080532-35080551 | Msa0404260:three_prime_UTR | 45.0% |
| !!! | ATTTTATTTTTTTATTTGAA+AGG | + | chr3_2:35079307-35079326 | Msa0404260:intron | 5.0% |
| !!! | ACACCCTACGGTGCCATTTT+TGG | + | chr3_2:35076161-35076180 | Msa0404260:five_prime_UTR | 50.0% |
| !!! | CACCCTACGGTGCCATTTTT+GGG | + | chr3_2:35076162-35076181 | Msa0404260:five_prime_UTR | 50.0% |
| GATCACACAAGTTTCCTCGC+CGG | + | chr3_2:35076430-35076449 | Msa0404260:CDS | 50.0% | |
| CTGCCATATTGCTGCTCCAT+AGG | - | chr3_2:35076954-35076973 | None:intergenic | 50.0% | |
| GGCCACCAAAGAATACTGCT+TGG | - | chr3_2:35077514-35077533 | None:intergenic | 50.0% | |
| ! | TTCTTTGGTGGCCAACTGGA+AGG | + | chr3_2:35077521-35077540 | Msa0404260:CDS | 50.0% |
| ! | TAGGACCTAAGATCTGGGGT+TGG | + | chr3_2:35078279-35078298 | Msa0404260:intron | 50.0% |
| ! | AGGACCTAAGATCTGGGGTT+GGG | + | chr3_2:35078280-35078299 | Msa0404260:intron | 50.0% |
| AAGTCCCAACCCCAGATCTT+AGG | - | chr3_2:35078287-35078306 | None:intergenic | 50.0% | |
| ACAAGTTATCTGGAGGGGCA+TGG | + | chr3_2:35078457-35078476 | Msa0404260:CDS | 50.0% | |
| ! | CAAGTTATCTGGAGGGGCAT+GGG | + | chr3_2:35078458-35078477 | Msa0404260:CDS | 50.0% |
| AAGTTCAGGATCTGGTGTGC+TGG | + | chr3_2:35078648-35078667 | Msa0404260:intron | 50.0% | |
| GGTAATCAACACTGCGGACA+TGG | - | chr3_2:35078796-35078815 | None:intergenic | 50.0% | |
| GTTACAGCAGAGCATGAGTC+AGG | + | chr3_2:35079190-35079209 | Msa0404260:CDS | 50.0% | |
| GTTCCAATCCAAGAGCTTCC+AGG | + | chr3_2:35079244-35079263 | Msa0404260:CDS | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+GGG | - | chr3_2:35079593-35079612 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | - | chr3_2:35079594-35079613 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr3_2:35079593-35079612 | None:intergenic | 50.0% | |
| GTACATATGCACAGACGCAC+TGG | + | chr3_2:35079817-35079836 | Msa0404260:intron | 50.0% | |
| CGGATTCGACTGTCAACTTG+TGG | + | chr3_2:35079925-35079944 | Msa0404260:CDS | 50.0% | |
| AACGGACAGATGACTCTGCT+TGG | - | chr3_2:35080063-35080082 | None:intergenic | 50.0% | |
| AGCAGAGTCATCTGTCCGTT+TGG | + | chr3_2:35080063-35080082 | Msa0404260:CDS | 50.0% | |
| CATGGAGTTCTCGTCAACCA+TGG | + | chr3_2:35080230-35080249 | Msa0404260:CDS | 50.0% | |
| TATCTCAAGACTCCAGAGGC+AGG | - | chr3_2:35080487-35080506 | None:intergenic | 50.0% | |
| ATGGCACCGTAGGGTGTGTT+TGG | - | chr3_2:35076158-35076177 | None:intergenic | 55.0% | |
| TAAGGCTAAGAGTTCCGGCG+AGG | - | chr3_2:35076447-35076466 | None:intergenic | 55.0% | |
| GAACCCTTACCACGAAGGGT+AGG | + | chr3_2:35077809-35077828 | Msa0404260:intron | 55.0% | |
| AGGATCTGGTGTGCTGGAAG+AGG | + | chr3_2:35078654-35078673 | Msa0404260:intron | 55.0% | |
| GGATCTGGTGTGCTGGAAGA+GGG | + | chr3_2:35078655-35078674 | Msa0404260:intron | 55.0% | |
| TGGCCTGGAAGCTCTTGGAT+TGG | - | chr3_2:35079250-35079269 | None:intergenic | 55.0% | |
| AGCTTCCAGGCCACACACAT+TGG | + | chr3_2:35079257-35079276 | Msa0404260:CDS | 55.0% | |
| AGGTACCAATGTGTGTGGCC+TGG | - | chr3_2:35079265-35079284 | None:intergenic | 55.0% | |
| GGGTGAATACACCCTTGCTC+AGG | + | chr3_2:35079752-35079771 | Msa0404260:intron | 55.0% | |
| ! | TGCACAGACGCACTGGTGAA+AGG | + | chr3_2:35079824-35079843 | Msa0404260:intron | 55.0% |
| ! | ACAGACGCACTGGTGAAAGG+TGG | + | chr3_2:35079827-35079846 | Msa0404260:intron | 55.0% |
| ! | CAGACGCACTGGTGAAAGGT+GGG | + | chr3_2:35079828-35079847 | Msa0404260:intron | 55.0% |
| GTGTGTGGCCTGGAAGCTCT+TGG | - | chr3_2:35079255-35079274 | None:intergenic | 60.0% | |
| GAGAGAGAGAGAGAGAGGGG+AGG | - | chr3_2:35079590-35079609 | None:intergenic | 60.0% | |
| GAGAGAGAGAGGGGAGGACC+AGG | - | chr3_2:35079584-35079603 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 35076154 | 35080865 | 35076154 | ID=Msa0404260;Name=Msa0404260 |
| chr3_2 | mRNA | 35076154 | 35080865 | 35076154 | ID=Msa0404260-mRNA-1;Parent=Msa0404260;Name=Msa0404260-mRNA-1;_AED=0.26;_eAED=0.26;_QI=106|1|1|1|1|1|13|442|350 |
| chr3_2 | exon | 35076154 | 35076304 | 35076154 | ID=Msa0404260-mRNA-1:exon:7167;Parent=Msa0404260-mRNA-1 |
| chr3_2 | exon | 35076397 | 35076480 | 35076397 | ID=Msa0404260-mRNA-1:exon:7168;Parent=Msa0404260-mRNA-1 |
| chr3_2 | exon | 35076562 | 35076694 | 35076562 | ID=Msa0404260-mRNA-1:exon:7169;Parent=Msa0404260-mRNA-1 |
| chr3_2 | exon | 35076945 | 35077056 | 35076945 | ID=Msa0404260-mRNA-1:exon:7170;Parent=Msa0404260-mRNA-1 |
| chr3_2 | exon | 35077519 | 35077618 | 35077519 | ID=Msa0404260-mRNA-1:exon:7171;Parent=Msa0404260-mRNA-1 |
| chr3_2 | exon | 35078426 | 35078553 | 35078426 | ID=Msa0404260-mRNA-1:exon:7172;Parent=Msa0404260-mRNA-1 |
| chr3_2 | exon | 35078769 | 35078838 | 35078769 | ID=Msa0404260-mRNA-1:exon:7173;Parent=Msa0404260-mRNA-1 |
| chr3_2 | exon | 35079190 | 35079278 | 35079190 | ID=Msa0404260-mRNA-1:exon:7174;Parent=Msa0404260-mRNA-1 |
| chr3_2 | exon | 35079539 | 35079584 | 35079539 | ID=Msa0404260-mRNA-1:exon:7175;Parent=Msa0404260-mRNA-1 |
| chr3_2 | exon | 35079915 | 35079985 | 35079915 | ID=Msa0404260-mRNA-1:exon:7176;Parent=Msa0404260-mRNA-1 |
| chr3_2 | exon | 35080060 | 35080133 | 35080060 | ID=Msa0404260-mRNA-1:exon:7177;Parent=Msa0404260-mRNA-1 |
| chr3_2 | exon | 35080224 | 35080282 | 35080224 | ID=Msa0404260-mRNA-1:exon:7178;Parent=Msa0404260-mRNA-1 |
| chr3_2 | exon | 35080382 | 35080865 | 35080382 | ID=Msa0404260-mRNA-1:exon:7179;Parent=Msa0404260-mRNA-1 |
| chr3_2 | five_prime_UTR | 35076154 | 35076259 | 35076154 | ID=Msa0404260-mRNA-1:five_prime_utr;Parent=Msa0404260-mRNA-1 |
| chr3_2 | CDS | 35076260 | 35076304 | 35076260 | ID=Msa0404260-mRNA-1:cds;Parent=Msa0404260-mRNA-1 |
| chr3_2 | CDS | 35076397 | 35076480 | 35076397 | ID=Msa0404260-mRNA-1:cds;Parent=Msa0404260-mRNA-1 |
| chr3_2 | CDS | 35076562 | 35076694 | 35076562 | ID=Msa0404260-mRNA-1:cds;Parent=Msa0404260-mRNA-1 |
| chr3_2 | CDS | 35076945 | 35077056 | 35076945 | ID=Msa0404260-mRNA-1:cds;Parent=Msa0404260-mRNA-1 |
| chr3_2 | CDS | 35077519 | 35077618 | 35077519 | ID=Msa0404260-mRNA-1:cds;Parent=Msa0404260-mRNA-1 |
| chr3_2 | CDS | 35078426 | 35078553 | 35078426 | ID=Msa0404260-mRNA-1:cds;Parent=Msa0404260-mRNA-1 |
| chr3_2 | CDS | 35078769 | 35078838 | 35078769 | ID=Msa0404260-mRNA-1:cds;Parent=Msa0404260-mRNA-1 |
| chr3_2 | CDS | 35079190 | 35079278 | 35079190 | ID=Msa0404260-mRNA-1:cds;Parent=Msa0404260-mRNA-1 |
| chr3_2 | CDS | 35079539 | 35079584 | 35079539 | ID=Msa0404260-mRNA-1:cds;Parent=Msa0404260-mRNA-1 |
| chr3_2 | CDS | 35079915 | 35079985 | 35079915 | ID=Msa0404260-mRNA-1:cds;Parent=Msa0404260-mRNA-1 |
| chr3_2 | CDS | 35080060 | 35080133 | 35080060 | ID=Msa0404260-mRNA-1:cds;Parent=Msa0404260-mRNA-1 |
| chr3_2 | CDS | 35080224 | 35080282 | 35080224 | ID=Msa0404260-mRNA-1:cds;Parent=Msa0404260-mRNA-1 |
| chr3_2 | CDS | 35080382 | 35080423 | 35080382 | ID=Msa0404260-mRNA-1:cds;Parent=Msa0404260-mRNA-1 |
| chr3_2 | three_prime_UTR | 35080424 | 35080865 | 35080424 | ID=Msa0404260-mRNA-1:three_prime_utr;Parent=Msa0404260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
