Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481660 | XP_003626441.2 | 86.034 | 358 | 9 | 2 | 2 | 328 | 4 | 351 | 0.0 | 616 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481660 | sp|C6TBN2|AKR1_SOYBN | 69.101 | 356 | 66 | 5 | 6 | 328 | 2 | 346 | 9.85e-171 | 480 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481660 | G7L1W1 | 86.034 | 358 | 9 | 2 | 2 | 328 | 4 | 351 | 0.0 | 616 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046890 | Msa0481660 | 0.860041 | 2.722681e-63 | -8.615850e-47 |
| Msa0187510 | Msa0481660 | 0.802240 | 6.162668e-49 | -8.615850e-47 |
| Msa0208480 | Msa0481660 | 0.816168 | 6.356151e-52 | -8.615850e-47 |
| Msa0208510 | Msa0481660 | 0.841469 | 4.662498e-58 | -8.615850e-47 |
| Msa0238600 | Msa0481660 | 0.804002 | 2.661698e-49 | -8.615850e-47 |
| Msa0481660 | Msa0915360 | 0.819469 | 1.142876e-52 | -8.615850e-47 |
| Msa0481660 | Msa0989000 | 0.806527 | 7.877054e-50 | -8.615850e-47 |
| Msa0481660 | Msa1038400 | 0.868979 | 4.363784e-66 | -8.615850e-47 |
| Msa0481660 | Msa1129360 | 0.957634 | 1.689072e-115 | -8.615850e-47 |
| Msa0481660 | Msa1350480 | 0.831966 | 1.236733e-55 | -8.615850e-47 |
| Msa0338760 | Msa0481660 | 0.811382 | 7.200808e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481660 | MtrunA17_Chr7g0274071 | 86.034 | 358 | 9 | 2 | 2 | 328 | 4 | 351 | 0.0 | 616 |
| Msa0481660 | MtrunA17_Chr7g0274061 | 74.510 | 357 | 42 | 5 | 6 | 323 | 4 | 350 | 0.0 | 514 |
| Msa0481660 | MtrunA17_Chr1g0204651 | 57.225 | 346 | 104 | 4 | 11 | 322 | 5 | 340 | 5.13e-142 | 405 |
| Msa0481660 | MtrunA17_Chr7g0274041 | 57.514 | 346 | 103 | 5 | 11 | 322 | 7 | 342 | 2.55e-140 | 400 |
| Msa0481660 | MtrunA17_Chr7g0221791 | 51.744 | 344 | 118 | 7 | 11 | 321 | 4 | 332 | 1.41e-116 | 340 |
| Msa0481660 | MtrunA17_Chr7g0222171 | 51.163 | 344 | 120 | 7 | 11 | 321 | 4 | 332 | 1.27e-114 | 335 |
| Msa0481660 | MtrunA17_Chr7g0274081 | 78.173 | 197 | 39 | 2 | 131 | 323 | 2 | 198 | 7.81e-111 | 320 |
| Msa0481660 | MtrunA17_Chr7g0222121 | 47.467 | 375 | 115 | 8 | 14 | 321 | 7 | 366 | 2.96e-109 | 323 |
| Msa0481660 | MtrunA17_Chr7g0221771 | 50.909 | 110 | 50 | 2 | 212 | 321 | 1 | 106 | 2.02e-35 | 124 |
| Msa0481660 | MtrunA17_Chr7g0222141 | 51.376 | 109 | 52 | 1 | 102 | 209 | 31 | 139 | 2.57e-34 | 123 |
| Msa0481660 | MtrunA17_Chr7g0222151 | 58.667 | 75 | 31 | 0 | 213 | 287 | 2 | 76 | 2.19e-27 | 102 |
| Msa0481660 | MtrunA17_Chr7g0274091 | 54.255 | 94 | 12 | 1 | 7 | 69 | 5 | 98 | 4.72e-24 | 95.1 |
| Msa0481660 | MtrunA17_Chr7g0221781 | 39.370 | 127 | 48 | 1 | 11 | 108 | 4 | 130 | 1.49e-22 | 91.7 |
| Msa0481660 | MtrunA17_Chr1g0169691 | 30.292 | 274 | 166 | 8 | 37 | 295 | 54 | 317 | 2.90e-21 | 92.4 |
| Msa0481660 | MtrunA17_Chr3g0095421 | 29.762 | 252 | 146 | 8 | 51 | 293 | 121 | 350 | 6.70e-21 | 92.0 |
| Msa0481660 | MtrunA17_Chr8g0380261 | 27.206 | 272 | 166 | 9 | 51 | 292 | 114 | 383 | 1.73e-19 | 88.2 |
| Msa0481660 | MtrunA17_Chr3g0127491 | 26.848 | 257 | 157 | 9 | 51 | 297 | 116 | 351 | 2.57e-17 | 81.6 |
| Msa0481660 | MtrunA17_Chr1g0167421 | 27.864 | 323 | 173 | 13 | 11 | 279 | 73 | 389 | 2.93e-17 | 82.0 |
| Msa0481660 | MtrunA17_Chr4g0018921 | 27.397 | 219 | 120 | 8 | 84 | 291 | 92 | 282 | 1.09e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481660 | AT1G60710.1 | 54.651 | 344 | 111 | 5 | 11 | 321 | 7 | 338 | 3.37e-123 | 357 |
| Msa0481660 | AT1G60690.1 | 53.198 | 344 | 116 | 5 | 11 | 321 | 7 | 338 | 1.79e-121 | 353 |
| Msa0481660 | AT1G60730.1 | 51.744 | 344 | 121 | 5 | 11 | 321 | 7 | 338 | 4.74e-117 | 342 |
| Msa0481660 | AT1G60680.1 | 50.568 | 352 | 128 | 6 | 11 | 328 | 7 | 346 | 8.46e-117 | 341 |
| Msa0481660 | AT1G60750.1 | 51.754 | 342 | 108 | 5 | 11 | 321 | 8 | 323 | 8.82e-117 | 340 |
| Msa0481660 | AT1G60730.3 | 50.847 | 354 | 129 | 6 | 11 | 321 | 7 | 358 | 5.44e-116 | 340 |
| Msa0481660 | AT1G10810.1 | 49.714 | 350 | 131 | 5 | 11 | 327 | 7 | 344 | 2.42e-110 | 325 |
| Msa0481660 | AT1G10810.3 | 56.383 | 282 | 108 | 4 | 49 | 327 | 23 | 292 | 1.75e-107 | 315 |
| Msa0481660 | AT1G60680.2 | 53.812 | 223 | 62 | 3 | 11 | 202 | 7 | 219 | 1.07e-74 | 230 |
| Msa0481660 | AT1G10810.2 | 50.000 | 236 | 72 | 3 | 11 | 216 | 7 | 226 | 4.06e-70 | 219 |
| Msa0481660 | AT1G60730.2 | 43.165 | 139 | 49 | 1 | 11 | 119 | 7 | 145 | 2.25e-28 | 108 |
| Msa0481660 | AT1G04690.1 | 30.769 | 260 | 153 | 8 | 37 | 281 | 54 | 301 | 5.46e-22 | 95.1 |
| Msa0481660 | AT1G06690.1 | 27.208 | 283 | 170 | 9 | 24 | 297 | 110 | 365 | 2.13e-19 | 88.2 |
| Msa0481660 | AT5G53580.1 | 27.632 | 228 | 134 | 7 | 84 | 298 | 144 | 353 | 7.72e-19 | 86.7 |
| Msa0481660 | AT1G04420.1 | 28.758 | 306 | 177 | 14 | 27 | 293 | 98 | 401 | 8.45e-17 | 80.9 |
| Msa0481660 | AT2G21260.2 | 27.897 | 233 | 121 | 9 | 81 | 293 | 16 | 221 | 9.37e-13 | 67.4 |
| Msa0481660 | AT2G21260.1 | 27.897 | 233 | 121 | 9 | 81 | 293 | 84 | 289 | 1.42e-12 | 67.8 |
| Msa0481660 | AT2G21250.1 | 28.509 | 228 | 126 | 9 | 81 | 293 | 84 | 289 | 4.61e-11 | 63.2 |
| Msa0481660 | AT4G33670.1 | 23.592 | 284 | 174 | 10 | 25 | 293 | 47 | 302 | 6.65e-11 | 62.8 |
Find 97 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAATCCCTTATTATTTA+TGG | 0.046291 | 3_3:+87956960 | None:intergenic |
| ATCCAGGTGGCTACAAAATT+TGG | 0.216306 | 3_3:-87959310 | Msa0481660:CDS |
| TCCCATACCACCGGCACTTC+TGG | 0.235548 | 3_3:+87959282 | None:intergenic |
| ATCACTGCAAAATGCAAAAT+TGG | 0.242540 | 3_3:-87959943 | Msa0481660:five_prime_UTR |
| GTTGAGACCGTTGAAACTTT+TGG | 0.258801 | 3_3:+87957136 | None:intergenic |
| ACTTGGAACCCAAGGCTTTC+AGG | 0.279174 | 3_3:-87959847 | Msa0481660:intron |
| TGTGCTCTCCTTATTGTATC+AGG | 0.290458 | 3_3:+87958822 | None:intergenic |
| GATCCTCTTCCTGAAGAAAT+TGG | 0.293230 | 3_3:-87959676 | Msa0481660:CDS |
| TAGGTTTCAAAATTCGGTTT+AGG | 0.304608 | 3_3:-87959727 | Msa0481660:CDS |
| AGGTTTCAAAATTCGGTTTA+GGG | 0.317344 | 3_3:-87959726 | Msa0481660:CDS |
| AACAACTAAGATTGAGAATC+TGG | 0.331104 | 3_3:-87957302 | Msa0481660:CDS |
| TGTTTGTGTTGCGGTCATTT+TGG | 0.342332 | 3_3:+87959896 | None:intergenic |
| ACGGAAATGCCAATTTCTTC+AGG | 0.353338 | 3_3:+87959667 | None:intergenic |
| CGAAGATGTGCCGAGCTTCA+TGG | 0.363687 | 3_3:-87958444 | Msa0481660:intron |
| CCTTTACCAAGTGGACTATA+TGG | 0.375897 | 3_3:+87958491 | None:intergenic |
| AATGCACTCGATCAAGAATA+AGG | 0.378365 | 3_3:-87957086 | Msa0481660:three_prime_UTR |
| TGATACAGAGAGCTTGGTAT+TGG | 0.380295 | 3_3:-87958521 | Msa0481660:intron |
| TTTCATTCCATAAATAATAA+GGG | 0.382154 | 3_3:-87956967 | Msa0481660:three_prime_UTR |
| AAAATTCGGTTTAGGGTGTA+TGG | 0.387624 | 3_3:-87959719 | Msa0481660:CDS |
| GAGGGAAAAGTTAAGTATAT+TGG | 0.391690 | 3_3:-87958861 | Msa0481660:CDS |
| ATCCTCCTCTGTGTGTCAGC+GGG | 0.392134 | 3_3:+87960033 | None:intergenic |
| AAGGATGTTGTGCCTATTCC+TGG | 0.394764 | 3_3:-87957984 | Msa0481660:intron |
| GGTAGGTGAACTTAAGAAAC+TGG | 0.404929 | 3_3:-87958889 | Msa0481660:CDS |
| ATCCAGAAGTGCCGGTGGTA+TGG | 0.406125 | 3_3:-87959284 | Msa0481660:CDS |
| AAGCCAGCCCTGATACAATA+AGG | 0.414769 | 3_3:-87958830 | Msa0481660:CDS |
| CCGCTTCCAAGCTGAGAACT+TGG | 0.415734 | 3_3:-87958105 | Msa0481660:CDS |
| CTACCTGCTATATCATCTTC+AGG | 0.426229 | 3_3:+87957211 | None:intergenic |
| GCACAACATCCTTGCCTTGT+TGG | 0.434088 | 3_3:+87957994 | None:intergenic |
| TCTATTTGTAAAGCTGTGAT+AGG | 0.434957 | 3_3:+87958789 | None:intergenic |
| TACAAATAGAGTGGTCTCTC+TGG | 0.437707 | 3_3:-87958776 | Msa0481660:CDS |
| GATTTGAATCAAATTCTCAT+AGG | 0.443062 | 3_3:-87956945 | Msa0481660:three_prime_UTR |
| GAAGTAAAATCTCTTTCAGT+TGG | 0.444389 | 3_3:-87957111 | Msa0481660:three_prime_UTR |
| TCCTTAACTGTATCCTCAAT+AGG | 0.446629 | 3_3:+87959151 | None:intergenic |
| AGGTGTGTTAGCAAACTTCC+AGG | 0.458381 | 3_3:+87957159 | None:intergenic |
| TCTCCTTATTGTATCAGGGC+TGG | 0.459103 | 3_3:+87958827 | None:intergenic |
| GCCTATTGAGGATACAGTTA+AGG | 0.469796 | 3_3:-87959152 | Msa0481660:CDS |
| CCATATAGTCCACTTGGTAA+AGG | 0.481916 | 3_3:-87958491 | Msa0481660:CDS |
| TTTCGTTGATACAGAGAGCT+TGG | 0.483556 | 3_3:-87958527 | Msa0481660:intron |
| ATGCCAATTTCTTCAGGAAG+AGG | 0.491719 | 3_3:+87959673 | None:intergenic |
| TCCAGAAGTGCCGGTGGTAT+GGG | 0.494504 | 3_3:-87959283 | Msa0481660:CDS |
| TTAGATGAATGTGAATGAAA+TGG | 0.500630 | 3_3:-87956914 | Msa0481660:three_prime_UTR |
| CAAGTTCTCAGCTTGGAAGC+GGG | 0.500791 | 3_3:+87958106 | None:intergenic |
| CTAATTCCTCATGTCACACT+TGG | 0.500882 | 3_3:-87959864 | Msa0481660:CDS |
| AGAACAAGGTTATATATGAT+AGG | 0.508380 | 3_3:-87958079 | Msa0481660:CDS |
| ACGAGATAGTTCCTCTCTGC+AGG | 0.515403 | 3_3:-87958737 | Msa0481660:intron |
| CGATACAACTGTGCCTATTG+AGG | 0.516697 | 3_3:-87959164 | Msa0481660:CDS |
| CCAAGTTCTCAGCTTGGAAG+CGG | 0.517525 | 3_3:+87958105 | None:intergenic |
| TCTTGACCAAGTTCTCAGCT+TGG | 0.528939 | 3_3:+87958099 | None:intergenic |
| GTGCTCTCCTTATTGTATCA+GGG | 0.530977 | 3_3:+87958823 | None:intergenic |
| TTCAGTTTGTGTTTGTGTTG+CGG | 0.534288 | 3_3:+87959887 | None:intergenic |
| ACCTTTGATTCCCATACCAC+CGG | 0.535653 | 3_3:+87959273 | None:intergenic |
| TCATTCACATTCATCTAACA+TGG | 0.540927 | 3_3:+87956919 | None:intergenic |
| ATGGAATGGATAGTTTATCC+TGG | 0.545904 | 3_3:-87957177 | Msa0481660:CDS |
| CTGCTCAGTTAGCATTAGCA+TGG | 0.546251 | 3_3:-87958022 | Msa0481660:CDS |
| AACAGCAGAACAAATGCAAA+CGG | 0.549192 | 3_3:+87956989 | None:intergenic |
| GGGTGTATGGCCCTCAGTGG+AGG | 0.554437 | 3_3:-87959706 | Msa0481660:CDS |
| ACTTAAGAAACTGGTGGACG+AGG | 0.557105 | 3_3:-87958880 | Msa0481660:CDS |
| TGATGATACCTGAAAGCCTT+GGG | 0.564484 | 3_3:+87959839 | None:intergenic |
| GCCGGTGGTATGGGAATCAA+AGG | 0.566837 | 3_3:-87959274 | Msa0481660:CDS |
| CACACCTCCAAAAGTTTCAA+CGG | 0.566882 | 3_3:-87957143 | Msa0481660:CDS |
| CATGTCACACTTGGAACCCA+AGG | 0.578508 | 3_3:-87959855 | Msa0481660:CDS |
| GTTCCTGAAGATGATATAGC+AGG | 0.578538 | 3_3:-87957214 | Msa0481660:CDS |
| TATGGGAATCAAAGGTTCAC+CGG | 0.579317 | 3_3:-87959266 | Msa0481660:CDS |
| TCCTCCTCTGTGTGTCAGCG+GGG | 0.579998 | 3_3:+87960034 | None:intergenic |
| ACTATCAGAAGAGGACATGC+GGG | 0.584092 | 3_3:-87957251 | Msa0481660:CDS |
| CAGCTTGAACGCACATACTC+CGG | 0.589412 | 3_3:+87959247 | None:intergenic |
| GAGAATCTGGATCAAAACCT+TGG | 0.589578 | 3_3:-87957289 | Msa0481660:CDS |
| TTTGGTATATCCAGAAGTGC+CGG | 0.592216 | 3_3:-87959292 | Msa0481660:CDS |
| TGAGAACTTGGTCAAGAACA+AGG | 0.594858 | 3_3:-87958093 | Msa0481660:CDS |
| AGCAGTGAAACTATCAGAAG+AGG | 0.596544 | 3_3:-87957260 | Msa0481660:CDS |
| ACTTCCCAGAGAAAAGATCC+AGG | 0.597330 | 3_3:-87959326 | Msa0481660:CDS |
| ATCATTATAACCTCCACTGA+GGG | 0.598759 | 3_3:+87959696 | None:intergenic |
| TAGTAGATACTACAATGGAA+TGG | 0.602882 | 3_3:-87957191 | Msa0481660:CDS |
| TATCCTCCTCTGTGTGTCAG+CGG | 0.607033 | 3_3:+87960032 | None:intergenic |
| CCTCCTCTGTGTGTCAGCGG+GGG | 0.607663 | 3_3:+87960035 | None:intergenic |
| ATGGGTACTCCAACAAGGCA+AGG | 0.611881 | 3_3:-87958003 | Msa0481660:CDS |
| ATTGTACCATATAGTCCACT+TGG | 0.612810 | 3_3:-87958497 | Msa0481660:CDS |
| AAGTTCTCAGCTTGGAAGCG+GGG | 0.613856 | 3_3:+87958107 | None:intergenic |
| AAATGCTATACCATGAAGCT+CGG | 0.620782 | 3_3:+87958434 | None:intergenic |
| GAAAGTCTTAGCAAGAAGCA+TGG | 0.623738 | 3_3:-87958053 | Msa0481660:CDS |
| AACTATCAGAAGAGGACATG+CGG | 0.624051 | 3_3:-87957252 | Msa0481660:CDS |
| CTTAAGAAACTGGTGGACGA+GGG | 0.626596 | 3_3:-87958879 | Msa0481660:CDS |
| TCTCTGGACTCGCGACATTG+AGG | 0.626799 | 3_3:-87958760 | Msa0481660:CDS |
| TGCTCAGTTAGCATTAGCAT+GGG | 0.633628 | 3_3:-87958021 | Msa0481660:CDS |
| GTGATGATACCTGAAAGCCT+TGG | 0.646270 | 3_3:+87959838 | None:intergenic |
| TCACAGCTTTACAAATAGAG+TGG | 0.653310 | 3_3:-87958785 | Msa0481660:CDS |
| TTAGGGTGTATGGCCCTCAG+TGG | 0.653469 | 3_3:-87959709 | Msa0481660:CDS |
| GAGGAGGATATCACAAAGCG+AGG | 0.654372 | 3_3:-87960019 | Msa0481660:five_prime_UTR |
| AGGTGAACTTAAGAAACTGG+TGG | 0.677931 | 3_3:-87958886 | Msa0481660:CDS |
| GTTTCACTGCTAATGCACCA+AGG | 0.681712 | 3_3:+87957272 | None:intergenic |
| TGGGTTCCAAGTGTGACATG+AGG | 0.682273 | 3_3:+87959858 | None:intergenic |
| GCAGGTAGTAGATACTACAA+TGG | 0.684368 | 3_3:-87957196 | Msa0481660:CDS |
| TTAGCATGGGTACTCCAACA+AGG | 0.686154 | 3_3:-87958008 | Msa0481660:CDS |
| GGTATATCCAGAAGTGCCGG+TGG | 0.696646 | 3_3:-87959289 | Msa0481660:CDS |
| GATCATTATAACCTCCACTG+AGG | 0.735023 | 3_3:+87959695 | None:intergenic |
| ACTCGAACTAACCTGCAGAG+AGG | 0.749098 | 3_3:+87958726 | None:intergenic |
| TCCCAGAGAAAAGATCCAGG+TGG | 0.757635 | 3_3:-87959323 | Msa0481660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTGTTTTTATTATAGTT+AGG | + | chr3_3:87959253-87959272 | None:intergenic | 10.0% |
| !!! | TTTTATTCTTGAAAATATTA+TGG | - | chr3_3:87959610-87959629 | Msa0481660:intron | 10.0% |
| !! | CCTAAAATAAAAACAATAAT+AGG | + | chr3_3:87957210-87957229 | None:intergenic | 15.0% |
| !!! | CCTATTATTGTTTTTATTTT+AGG | - | chr3_3:87957207-87957226 | Msa0481660:CDS | 15.0% |
| !!! | TTATTTTAGGTTTCAAAATT+CGG | - | chr3_3:87957220-87957239 | Msa0481660:CDS | 15.0% |
| !! | CATTTATCATTCAAAAAAAA+TGG | - | chr3_3:87957496-87957515 | Msa0481660:intron | 15.0% |
| !!! | ATATCTTTTATGTTCTAAAT+TGG | - | chr3_3:87957524-87957543 | Msa0481660:intron | 15.0% |
| !! | AAAGAGAAAAAAATTCAAAT+TGG | + | chr3_3:87957572-87957591 | None:intergenic | 15.0% |
| !!! | ATAAAACTTTTTAAAAGGAA+AGG | + | chr3_3:87958786-87958805 | None:intergenic | 15.0% |
| !!! | ACAACATAAAACTTTTTAAA+AGG | + | chr3_3:87958791-87958810 | None:intergenic | 15.0% |
| !! | ATTATTGTAAAAATCTTTGA+TGG | - | chr3_3:87959028-87959047 | Msa0481660:intron | 15.0% |
| !! | AAAAAGCTGAAAATAAAATT+AGG | + | chr3_3:87959592-87959611 | None:intergenic | 15.0% |
| !!! | TTTTCATTCCATAAATAATA+AGG | - | chr3_3:87959985-87960004 | Msa0481660:intron | 15.0% |
| !! | TTTCATTCCATAAATAATAA+GGG | - | chr3_3:87959986-87960005 | Msa0481660:intron | 15.0% |
| !! | TATAGAGAGAAGAATATAAA+TGG | + | chr3_3:87957168-87957187 | None:intergenic | 20.0% |
| !! | TTAATATTTACTCATTTGTC+CGG | + | chr3_3:87957457-87957476 | None:intergenic | 20.0% |
| !!! | TTTATGTTCTAAATTGGATA+CGG | - | chr3_3:87957530-87957549 | Msa0481660:intron | 20.0% |
| !!! | ATTCAAGTTTGAAGATTATT+TGG | - | chr3_3:87957998-87958017 | Msa0481660:CDS | 20.0% |
| !! | TAACAAGTTTATTGTGTTAT+AGG | - | chr3_3:87958043-87958062 | Msa0481660:CDS | 20.0% |
| !! | CTTGATCATGAATTAAATAT+TGG | - | chr3_3:87958628-87958647 | Msa0481660:intron | 20.0% |
| !!! | TTAAACTTGAGTAATTTTAC+AGG | - | chr3_3:87958695-87958714 | Msa0481660:intron | 20.0% |
| !!! | TAAACTTGAGTAATTTTACA+GGG | - | chr3_3:87958696-87958715 | Msa0481660:intron | 20.0% |
| !!! | TCTAACAAAAGTGTATTTTT+TGG | + | chr3_3:87959222-87959241 | None:intergenic | 20.0% |
| !! | TAACAATTTATCACATAGTT+TGG | - | chr3_3:87959294-87959313 | Msa0481660:CDS | 20.0% |
| !! | TAAAAATTTAGAAGAACCTT+TGG | + | chr3_3:87959527-87959546 | None:intergenic | 20.0% |
| !! | TTCAAATCCCTTATTATTTA+TGG | + | chr3_3:87959996-87960015 | None:intergenic | 20.0% |
| ! | GGTATATACATACTAATCAT+AGG | - | chr3_3:87957398-87957417 | Msa0481660:intron | 25.0% |
| ! | ATACATACTAATCATAGGTT+AGG | - | chr3_3:87957403-87957422 | Msa0481660:intron | 25.0% |
| !!! | ATTATTTGATTGTGTTGACT+AGG | - | chr3_3:87957594-87957613 | Msa0481660:intron | 25.0% |
| ! | CATGTTAATTCTTACTGATA+TGG | - | chr3_3:87957889-87957908 | Msa0481660:intron | 25.0% |
| ! | AAGTTTATTGTGTTATAGGT+AGG | - | chr3_3:87958047-87958066 | Msa0481660:CDS | 25.0% |
| !! | TTGAACAACTTTCATTGATT+AGG | - | chr3_3:87958313-87958332 | Msa0481660:intron | 25.0% |
| ! | ATGTCTTAACAGTAATTCTA+TGG | + | chr3_3:87958580-87958599 | None:intergenic | 25.0% |
| ! | GATCAATGCTATTACATAAT+TGG | + | chr3_3:87958604-87958623 | None:intergenic | 25.0% |
| !! | AAACTTGAGTAATTTTACAG+GGG | - | chr3_3:87958697-87958716 | Msa0481660:intron | 25.0% |
| ! | CATGTGAGAAAAAACAAATA+AGG | + | chr3_3:87958730-87958749 | None:intergenic | 25.0% |
| ! | AGAACAAGGTTATATATGAT+AGG | - | chr3_3:87958874-87958893 | Msa0481660:CDS | 25.0% |
| ! | TGTTCAGATTCATAAATAAG+AGG | + | chr3_3:87959092-87959111 | None:intergenic | 25.0% |
| ! | TATCACATAGTTTGGTTAAT+TGG | - | chr3_3:87959302-87959321 | Msa0481660:CDS | 25.0% |
| ! | ATGTAACGTTATAAATCGTA+CGG | - | chr3_3:87959396-87959415 | Msa0481660:intron | 25.0% |
| ! | CTCTTAATATATGAAATGCA+AGG | + | chr3_3:87959477-87959496 | None:intergenic | 25.0% |
| ! | AAGCTGAAAATAAAATTAGG+TGG | + | chr3_3:87959589-87959608 | None:intergenic | 25.0% |
| ! | GATTTGAATCAAATTCTCAT+AGG | - | chr3_3:87960008-87960027 | Msa0481660:intron | 25.0% |
| ! | TTAGATGAATGTGAATGAAA+TGG | - | chr3_3:87960039-87960058 | Msa0481660:five_prime_UTR | 25.0% |
| ATCACTGCAAAATGCAAAAT+TGG | - | chr3_3:87957010-87957029 | Msa0481660:three_prime_UTR | 30.0% | |
| TAGGTTTCAAAATTCGGTTT+AGG | - | chr3_3:87957226-87957245 | Msa0481660:CDS | 30.0% | |
| AGGTTTCAAAATTCGGTTTA+GGG | - | chr3_3:87957227-87957246 | Msa0481660:CDS | 30.0% | |
| ACTGAATGCATGCTTAATTA+CGG | + | chr3_3:87957308-87957327 | None:intergenic | 30.0% | |
| ATTAAGCATGCATTCAGTAA+AGG | - | chr3_3:87957310-87957329 | Msa0481660:intron | 30.0% | |
| !!! | GAATGAAATTTTGGTTGGAA+AGG | - | chr3_3:87957377-87957396 | Msa0481660:intron | 30.0% |
| TGAGAGTCCCAAATTATAAA+TGG | - | chr3_3:87957925-87957944 | Msa0481660:intron | 30.0% | |
| GAGAGTCCCAAATTATAAAT+GGG | - | chr3_3:87957926-87957945 | Msa0481660:intron | 30.0% | |
| GAGTCTCCCATTTATAATTT+GGG | + | chr3_3:87957935-87957954 | None:intergenic | 30.0% | |
| GAGGGAAAAGTTAAGTATAT+TGG | - | chr3_3:87958092-87958111 | Msa0481660:CDS | 30.0% | |
| TCTATTTGTAAAGCTGTGAT+AGG | + | chr3_3:87958167-87958186 | None:intergenic | 30.0% | |
| ! | CTCATATTTCTGATACTGTT+AGG | + | chr3_3:87959065-87959084 | None:intergenic | 30.0% |
| TTCTCAATTGTTAGGATACA+TGG | + | chr3_3:87959128-87959147 | None:intergenic | 30.0% | |
| ! | ACAACGATAGAAGAAGTATA+TGG | + | chr3_3:87959155-87959174 | None:intergenic | 30.0% |
| ATTACAAGTTTACCCCTTAT+TGG | - | chr3_3:87959424-87959443 | Msa0481660:intron | 30.0% | |
| TGACTCATATTCACCAATAA+GGG | + | chr3_3:87959440-87959459 | None:intergenic | 30.0% | |
| ATGACTCATATTCACCAATA+AGG | + | chr3_3:87959441-87959460 | None:intergenic | 30.0% | |
| AACAACTAAGATTGAGAATC+TGG | - | chr3_3:87959651-87959670 | Msa0481660:intron | 30.0% | |
| TAGTAGATACTACAATGGAA+TGG | - | chr3_3:87959762-87959781 | Msa0481660:intron | 30.0% | |
| ! | ACTGAAAGAGATTTTACTTC+AGG | + | chr3_3:87959842-87959861 | None:intergenic | 30.0% |
| GAAGTAAAATCTCTTTCAGT+TGG | - | chr3_3:87959842-87959861 | Msa0481660:intron | 30.0% | |
| TCATTCACATTCATCTAACA+TGG | + | chr3_3:87960037-87960056 | None:intergenic | 30.0% | |
| TTCAGTTTGTGTTTGTGTTG+CGG | + | chr3_3:87957069-87957088 | None:intergenic | 35.0% | |
| ! | AAAATTCGGTTTAGGGTGTA+TGG | - | chr3_3:87957234-87957253 | Msa0481660:CDS | 35.0% |
| ATCATTATAACCTCCACTGA+GGG | + | chr3_3:87957260-87957279 | None:intergenic | 35.0% | |
| TTTGACACTGCTGATGTTTA+TGG | - | chr3_3:87957343-87957362 | Msa0481660:intron | 35.0% | |
| !!! | TCGATGGTGGAATGAAATTT+TGG | - | chr3_3:87957368-87957387 | Msa0481660:intron | 35.0% |
| !! | TGGTGGAATGAAATTTTGGT+TGG | - | chr3_3:87957372-87957391 | Msa0481660:intron | 35.0% |
| TCCTTAACTGTATCCTCAAT+AGG | + | chr3_3:87957805-87957824 | None:intergenic | 35.0% | |
| GGAGTCTCCCATTTATAATT+TGG | + | chr3_3:87957936-87957955 | None:intergenic | 35.0% | |
| ! | AAAACCGGTTTATAGAGGTA+GGG | + | chr3_3:87957958-87957977 | None:intergenic | 35.0% |
| !! | CTCTATAAACCGGTTTTGTA+GGG | - | chr3_3:87957961-87957980 | Msa0481660:intron | 35.0% |
| ATAACTCAACCCTACAAAAC+CGG | + | chr3_3:87957973-87957992 | None:intergenic | 35.0% | |
| TCACAGCTTTACAAATAGAG+TGG | - | chr3_3:87958168-87958187 | Msa0481660:intron | 35.0% | |
| ! | TCATTGATTAGGAGTAACTC+AGG | - | chr3_3:87958324-87958343 | Msa0481660:intron | 35.0% |
| ! | CATTGATTAGGAGTAACTCA+GGG | - | chr3_3:87958325-87958344 | Msa0481660:intron | 35.0% |
| GTAACTCAGGGTTAAAGAAA+TGG | - | chr3_3:87958337-87958356 | Msa0481660:intron | 35.0% | |
| ATTGTACCATATAGTCCACT+TGG | - | chr3_3:87958456-87958475 | Msa0481660:CDS | 35.0% | |
| GCAAAAAAACCTTTACCAAG+TGG | + | chr3_3:87958474-87958493 | None:intergenic | 35.0% | |
| !!! | CTTGGTAAAGGTTTTTTTGC+TGG | - | chr3_3:87958474-87958493 | Msa0481660:CDS | 35.0% |
| !!! | AAAGGTTTTTTTGCTGGCAA+AGG | - | chr3_3:87958480-87958499 | Msa0481660:CDS | 35.0% |
| AAATGCTATACCATGAAGCT+CGG | + | chr3_3:87958522-87958541 | None:intergenic | 35.0% | |
| ! | TTTTGTAACTCACCAGGAAT+AGG | + | chr3_3:87958984-87959003 | None:intergenic | 35.0% |
| ! | TGCATATTTTGTAACTCACC+AGG | + | chr3_3:87958990-87959009 | None:intergenic | 35.0% |
| ATGGTGCATTCTCAATTGTT+AGG | + | chr3_3:87959136-87959155 | None:intergenic | 35.0% | |
| TACAACAATCACTCTGTTGT+CGG | + | chr3_3:87959338-87959357 | None:intergenic | 35.0% | |
| GACTCATATTCACCAATAAG+GGG | + | chr3_3:87959439-87959458 | None:intergenic | 35.0% | |
| ! | TATGGACTTCTTTTGTTCTC+AGG | - | chr3_3:87959628-87959647 | Msa0481660:intron | 35.0% |
| ATGGAATGGATAGTTTATCC+TGG | - | chr3_3:87959776-87959795 | Msa0481660:intron | 35.0% | |
| AATGCACTCGATCAAGAATA+AGG | - | chr3_3:87959867-87959886 | Msa0481660:CDS | 35.0% | |
| AACAGCAGAACAAATGCAAA+CGG | + | chr3_3:87959967-87959986 | None:intergenic | 35.0% | |
| ! | TGTTTGTGTTGCGGTCATTT+TGG | + | chr3_3:87957060-87957079 | None:intergenic | 40.0% |
| CTAATTCCTCATGTCACACT+TGG | - | chr3_3:87957089-87957108 | Msa0481660:three_prime_UTR | 40.0% | |
| TGATGATACCTGAAAGCCTT+GGG | + | chr3_3:87957117-87957136 | None:intergenic | 40.0% | |
| GATCATTATAACCTCCACTG+AGG | + | chr3_3:87957261-87957280 | None:intergenic | 40.0% | |
| GATCCTCTTCCTGAAGAAAT+TGG | - | chr3_3:87957277-87957296 | Msa0481660:CDS | 40.0% | |
| ATGCCAATTTCTTCAGGAAG+AGG | + | chr3_3:87957283-87957302 | None:intergenic | 40.0% | |
| ACGGAAATGCCAATTTCTTC+AGG | + | chr3_3:87957289-87957308 | None:intergenic | 40.0% | |
| ATCCAGGTGGCTACAAAATT+TGG | - | chr3_3:87957643-87957662 | Msa0481660:intron | 40.0% | |
| ! | TACCAAATTTTGTAGCCACC+TGG | + | chr3_3:87957648-87957667 | None:intergenic | 40.0% |
| ! | TTTGGTATATCCAGAAGTGC+CGG | - | chr3_3:87957661-87957680 | Msa0481660:intron | 40.0% |
| TATGGGAATCAAAGGTTCAC+CGG | - | chr3_3:87957687-87957706 | Msa0481660:intron | 40.0% | |
| GCCTATTGAGGATACAGTTA+AGG | - | chr3_3:87957801-87957820 | Msa0481660:intron | 40.0% | |
| ! | AAACCGGTTTATAGAGGTAG+GGG | + | chr3_3:87957957-87957976 | None:intergenic | 40.0% |
| ! | CAAAACCGGTTTATAGAGGT+AGG | + | chr3_3:87957959-87957978 | None:intergenic | 40.0% |
| ! | CCTACAAAACCGGTTTATAG+AGG | + | chr3_3:87957963-87957982 | None:intergenic | 40.0% |
| !! | CCTCTATAAACCGGTTTTGT+AGG | - | chr3_3:87957960-87957979 | Msa0481660:intron | 40.0% |
| GGTAGGTGAACTTAAGAAAC+TGG | - | chr3_3:87958064-87958083 | Msa0481660:CDS | 40.0% | |
| AGGTGAACTTAAGAAACTGG+TGG | - | chr3_3:87958067-87958086 | Msa0481660:CDS | 40.0% | |
| GTGCTCTCCTTATTGTATCA+GGG | + | chr3_3:87958133-87958152 | None:intergenic | 40.0% | |
| TGTGCTCTCCTTATTGTATC+AGG | + | chr3_3:87958134-87958153 | None:intergenic | 40.0% | |
| TACAAATAGAGTGGTCTCTC+TGG | - | chr3_3:87958177-87958196 | Msa0481660:intron | 40.0% | |
| CTTATCCTGTGAACTTAGAG+AGG | + | chr3_3:87958254-87958273 | None:intergenic | 40.0% | |
| GAAATGGAACTGATTGCTCT+TGG | - | chr3_3:87958353-87958372 | Msa0481660:intron | 40.0% | |
| TTTCGTTGATACAGAGAGCT+TGG | - | chr3_3:87958426-87958445 | Msa0481660:intron | 40.0% | |
| TGATACAGAGAGCTTGGTAT+TGG | - | chr3_3:87958432-87958451 | Msa0481660:intron | 40.0% | |
| !! | CCTTTACCAAGTGGACTATA+TGG | + | chr3_3:87958465-87958484 | None:intergenic | 40.0% |
| CCATATAGTCCACTTGGTAA+AGG | - | chr3_3:87958462-87958481 | Msa0481660:CDS | 40.0% | |
| TGAGAACTTGGTCAAGAACA+AGG | - | chr3_3:87958860-87958879 | Msa0481660:CDS | 40.0% | |
| GAAAGTCTTAGCAAGAAGCA+TGG | - | chr3_3:87958900-87958919 | Msa0481660:intron | 40.0% | |
| TGCTCAGTTAGCATTAGCAT+GGG | - | chr3_3:87958932-87958951 | Msa0481660:intron | 40.0% | |
| ! | TTAGGTGGAAAGCATATGCT+TGG | + | chr3_3:87959574-87959593 | None:intergenic | 40.0% |
| GAGAATCTGGATCAAAACCT+TGG | - | chr3_3:87959664-87959683 | Msa0481660:intron | 40.0% | |
| AGCAGTGAAACTATCAGAAG+AGG | - | chr3_3:87959693-87959712 | Msa0481660:CDS | 40.0% | |
| AACTATCAGAAGAGGACATG+CGG | - | chr3_3:87959701-87959720 | Msa0481660:CDS | 40.0% | |
| GTTCCTGAAGATGATATAGC+AGG | - | chr3_3:87959739-87959758 | Msa0481660:intron | 40.0% | |
| CTACCTGCTATATCATCTTC+AGG | + | chr3_3:87959745-87959764 | None:intergenic | 40.0% | |
| GCAGGTAGTAGATACTACAA+TGG | - | chr3_3:87959757-87959776 | Msa0481660:intron | 40.0% | |
| CACACCTCCAAAAGTTTCAA+CGG | - | chr3_3:87959810-87959829 | Msa0481660:intron | 40.0% | |
| ! | GTTGAGACCGTTGAAACTTT+TGG | + | chr3_3:87959820-87959839 | None:intergenic | 40.0% |
| GTGATGATACCTGAAAGCCT+TGG | + | chr3_3:87957118-87957137 | None:intergenic | 45.0% | |
| GCTGATGTTTATGGACTCGA+TGG | - | chr3_3:87957352-87957371 | Msa0481660:intron | 45.0% | |
| GATGTTTATGGACTCGATGG+TGG | - | chr3_3:87957355-87957374 | Msa0481660:intron | 45.0% | |
| ATTTGAACCAGGACCTCTAG+GGG | + | chr3_3:87957434-87957453 | None:intergenic | 45.0% | |
| GATTTGAACCAGGACCTCTA+GGG | + | chr3_3:87957435-87957454 | None:intergenic | 45.0% | |
| TAGAGGTCCTGGTTCAAATC+CGG | - | chr3_3:87957435-87957454 | Msa0481660:intron | 45.0% | |
| CATTTGTCCGGATTTGAACC+AGG | + | chr3_3:87957445-87957464 | None:intergenic | 45.0% | |
| ACTTCCCAGAGAAAAGATCC+AGG | - | chr3_3:87957627-87957646 | Msa0481660:intron | 45.0% | |
| ACCTTTGATTCCCATACCAC+CGG | + | chr3_3:87957683-87957702 | None:intergenic | 45.0% | |
| CGATACAACTGTGCCTATTG+AGG | - | chr3_3:87957789-87957808 | Msa0481660:intron | 45.0% | |
| ACTCCCCTACCTCTATAAAC+CGG | - | chr3_3:87957951-87957970 | Msa0481660:intron | 45.0% | |
| ! | ACTTAAGAAACTGGTGGACG+AGG | - | chr3_3:87958073-87958092 | Msa0481660:CDS | 45.0% |
| ! | CTTAAGAAACTGGTGGACGA+GGG | - | chr3_3:87958074-87958093 | Msa0481660:CDS | 45.0% |
| AAGCCAGCCCTGATACAATA+AGG | - | chr3_3:87958123-87958142 | Msa0481660:intron | 45.0% | |
| TCTCCTTATTGTATCAGGGC+TGG | + | chr3_3:87958129-87958148 | None:intergenic | 45.0% | |
| GAGTTCCTCTCTAAGTTCAC+AGG | - | chr3_3:87958246-87958265 | Msa0481660:intron | 45.0% | |
| TCTTGACCAAGTTCTCAGCT+TGG | + | chr3_3:87958857-87958876 | None:intergenic | 45.0% | |
| CTGCTCAGTTAGCATTAGCA+TGG | - | chr3_3:87958931-87958950 | Msa0481660:intron | 45.0% | |
| TTAGCATGGGTACTCCAACA+AGG | - | chr3_3:87958945-87958964 | Msa0481660:intron | 45.0% | |
| AAGGATGTTGTGCCTATTCC+TGG | - | chr3_3:87958969-87958988 | Msa0481660:intron | 45.0% | |
| GAGTGTCATCTGATGTACTC+AGG | - | chr3_3:87959494-87959513 | Msa0481660:intron | 45.0% | |
| GTACTCAGGTTACTAGCCAA+AGG | - | chr3_3:87959508-87959527 | Msa0481660:intron | 45.0% | |
| GTTTCACTGCTAATGCACCA+AGG | + | chr3_3:87959684-87959703 | None:intergenic | 45.0% | |
| ACTATCAGAAGAGGACATGC+GGG | - | chr3_3:87959702-87959721 | Msa0481660:CDS | 45.0% | |
| AGGTGTGTTAGCAAACTTCC+AGG | + | chr3_3:87959797-87959816 | None:intergenic | 45.0% | |
| ! | GAGACCGTTGAAACTTTTGG+AGG | + | chr3_3:87959817-87959836 | None:intergenic | 45.0% |
| TATCCTCCTCTGTGTGTCAG+CGG | + | chr3_3:87956924-87956943 | None:intergenic | 50.0% | |
| GAGGAGGATATCACAAAGCG+AGG | - | chr3_3:87956934-87956953 | Msa0481660:three_prime_UTR | 50.0% | |
| TGGGTTCCAAGTGTGACATG+AGG | + | chr3_3:87957098-87957117 | None:intergenic | 50.0% | |
| CATGTCACACTTGGAACCCA+AGG | - | chr3_3:87957098-87957117 | Msa0481660:three_prime_UTR | 50.0% | |
| ACTTGGAACCCAAGGCTTTC+AGG | - | chr3_3:87957106-87957125 | Msa0481660:three_prime_UTR | 50.0% | |
| AGGTTAGGTAGTTCCCCTAG+AGG | - | chr3_3:87957418-87957437 | Msa0481660:intron | 50.0% | |
| GGATTTGAACCAGGACCTCT+AGG | + | chr3_3:87957436-87957455 | None:intergenic | 50.0% | |
| TCCCAGAGAAAAGATCCAGG+TGG | - | chr3_3:87957630-87957649 | Msa0481660:intron | 50.0% | |
| ! | GCCACCTGGATCTTTTCTCT+GGG | + | chr3_3:87957634-87957653 | None:intergenic | 50.0% |
| ! | AGCCACCTGGATCTTTTCTC+TGG | + | chr3_3:87957635-87957654 | None:intergenic | 50.0% |
| CAGCTTGAACGCACATACTC+CGG | + | chr3_3:87957709-87957728 | None:intergenic | 50.0% | |
| ACGAGATAGTTCCTCTCTGC+AGG | - | chr3_3:87958216-87958235 | Msa0481660:intron | 50.0% | |
| ACTCGAACTAACCTGCAGAG+AGG | + | chr3_3:87958230-87958249 | None:intergenic | 50.0% | |
| AAGTTCTCAGCTTGGAAGCG+GGG | + | chr3_3:87958849-87958868 | None:intergenic | 50.0% | |
| CAAGTTCTCAGCTTGGAAGC+GGG | + | chr3_3:87958850-87958869 | None:intergenic | 50.0% | |
| CCAAGTTCTCAGCTTGGAAG+CGG | + | chr3_3:87958851-87958870 | None:intergenic | 50.0% | |
| ATGGGTACTCCAACAAGGCA+AGG | - | chr3_3:87958950-87958969 | Msa0481660:intron | 50.0% | |
| GCACAACATCCTTGCCTTGT+TGG | + | chr3_3:87958962-87958981 | None:intergenic | 50.0% | |
| ATCCTCCTCTGTGTGTCAGC+GGG | + | chr3_3:87956923-87956942 | None:intergenic | 55.0% | |
| GATACGATGCATGCGCATCG+CGG | + | chr3_3:87956970-87956989 | None:intergenic | 55.0% | |
| TTAGGGTGTATGGCCCTCAG+TGG | - | chr3_3:87957244-87957263 | Msa0481660:CDS | 55.0% | |
| !! | GGTATATCCAGAAGTGCCGG+TGG | - | chr3_3:87957664-87957683 | Msa0481660:intron | 55.0% |
| !! | ATCCAGAAGTGCCGGTGGTA+TGG | - | chr3_3:87957669-87957688 | Msa0481660:intron | 55.0% |
| !! | TCCAGAAGTGCCGGTGGTAT+GGG | - | chr3_3:87957670-87957689 | Msa0481660:intron | 55.0% |
| GCCGGTGGTATGGGAATCAA+AGG | - | chr3_3:87957679-87957698 | Msa0481660:intron | 55.0% | |
| TCTCTGGACTCGCGACATTG+AGG | - | chr3_3:87958193-87958212 | Msa0481660:intron | 55.0% | |
| CGAAGATGTGCCGAGCTTCA+TGG | - | chr3_3:87958509-87958528 | Msa0481660:CDS | 55.0% | |
| CCGCTTCCAAGCTGAGAACT+TGG | - | chr3_3:87958848-87958867 | Msa0481660:CDS | 55.0% | |
| CTGTGTGTCAGCGGGGGTTA+TGG | + | chr3_3:87956915-87956934 | None:intergenic | 60.0% | |
| TAACCCCCGCTGACACACAG+AGG | - | chr3_3:87956915-87956934 | Msa0481660:three_prime_UTR | 60.0% | |
| TCCTCCTCTGTGTGTCAGCG+GGG | + | chr3_3:87956922-87956941 | None:intergenic | 60.0% | |
| GGTAGTTCCCCTAGAGGTCC+TGG | - | chr3_3:87957424-87957443 | Msa0481660:intron | 60.0% | |
| TCCCATACCACCGGCACTTC+TGG | + | chr3_3:87957674-87957693 | None:intergenic | 60.0% | |
| CCTCCTCTGTGTGTCAGCGG+GGG | + | chr3_3:87956921-87956940 | None:intergenic | 65.0% | |
| GGGTGTATGGCCCTCAGTGG+AGG | - | chr3_3:87957247-87957266 | Msa0481660:CDS | 65.0% | |
| CCCCCGCTGACACACAGAGG+AGG | - | chr3_3:87956918-87956937 | Msa0481660:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 87956907 | 87960068 | 87956907 | ID=Msa0481660;Name=Msa0481660 |
| chr3_3 | mRNA | 87956907 | 87960068 | 87956907 | ID=Msa0481660-mRNA-1;Parent=Msa0481660;Name=Msa0481660-mRNA-1;_AED=0.38;_eAED=0.38;_QI=131|0.71|0.75|1|0.85|0.75|8|225|328 |
| chr3_3 | exon | 87956907 | 87957325 | 87956907 | ID=Msa0481660-mRNA-1:exon:25567;Parent=Msa0481660-mRNA-1 |
| chr3_3 | exon | 87957985 | 87958138 | 87957985 | ID=Msa0481660-mRNA-1:exon:25566;Parent=Msa0481660-mRNA-1 |
| chr3_3 | exon | 87958445 | 87958535 | 87958445 | ID=Msa0481660-mRNA-1:exon:25565;Parent=Msa0481660-mRNA-1 |
| chr3_3 | exon | 87958738 | 87958910 | 87958738 | ID=Msa0481660-mRNA-1:exon:25564;Parent=Msa0481660-mRNA-1 |
| chr3_3 | exon | 87959129 | 87959359 | 87959129 | ID=Msa0481660-mRNA-1:exon:25563;Parent=Msa0481660-mRNA-1 |
| chr3_3 | exon | 87959669 | 87959746 | 87959669 | ID=Msa0481660-mRNA-1:exon:25562;Parent=Msa0481660-mRNA-1 |
| chr3_3 | exon | 87959848 | 87959991 | 87959848 | ID=Msa0481660-mRNA-1:exon:25561;Parent=Msa0481660-mRNA-1 |
| chr3_3 | exon | 87960016 | 87960068 | 87960016 | ID=Msa0481660-mRNA-1:exon:25560;Parent=Msa0481660-mRNA-1 |
| chr3_3 | five_prime_UTR | 87960016 | 87960068 | 87960016 | ID=Msa0481660-mRNA-1:five_prime_utr;Parent=Msa0481660-mRNA-1 |
| chr3_3 | five_prime_UTR | 87959914 | 87959991 | 87959914 | ID=Msa0481660-mRNA-1:five_prime_utr;Parent=Msa0481660-mRNA-1 |
| chr3_3 | CDS | 87959848 | 87959913 | 87959848 | ID=Msa0481660-mRNA-1:cds;Parent=Msa0481660-mRNA-1 |
| chr3_3 | CDS | 87959669 | 87959746 | 87959669 | ID=Msa0481660-mRNA-1:cds;Parent=Msa0481660-mRNA-1 |
| chr3_3 | CDS | 87959129 | 87959359 | 87959129 | ID=Msa0481660-mRNA-1:cds;Parent=Msa0481660-mRNA-1 |
| chr3_3 | CDS | 87958738 | 87958910 | 87958738 | ID=Msa0481660-mRNA-1:cds;Parent=Msa0481660-mRNA-1 |
| chr3_3 | CDS | 87958445 | 87958535 | 87958445 | ID=Msa0481660-mRNA-1:cds;Parent=Msa0481660-mRNA-1 |
| chr3_3 | CDS | 87957985 | 87958138 | 87957985 | ID=Msa0481660-mRNA-1:cds;Parent=Msa0481660-mRNA-1 |
| chr3_3 | CDS | 87957132 | 87957325 | 87957132 | ID=Msa0481660-mRNA-1:cds;Parent=Msa0481660-mRNA-1 |
| chr3_3 | three_prime_UTR | 87956907 | 87957131 | 87956907 | ID=Msa0481660-mRNA-1:three_prime_utr;Parent=Msa0481660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
