AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0187640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0187640 MtrunA17_Chr7g0273941 85.455 495 36 9 1 487 17 483 0.0 763
Msa0187640 MtrunA17_Chr1g0190851 45.850 506 203 18 32 492 34 513 3.22e-110 338
Msa0187640 MtrunA17_Chr2g0290511 31.250 256 137 9 245 481 114 349 1.41e-30 122
Msa0187640 MtrunA17_Chr6g0463941 55.238 105 38 2 385 489 464 559 1.04e-28 120
Msa0187640 MtrunA17_Chr6g0463941 41.837 98 47 2 385 482 55 142 5.78e-16 80.9
Msa0187640 MtrunA17_Chr1g0201941 43.750 96 44 2 385 480 57 142 9.72e-17 83.6
Msa0187640 MtrunA17_Chr1g0201941 35.227 88 48 2 233 317 274 355 8.87e-11 64.7
Msa0187640 MtrunA17_Chr1g0201911 42.424 99 47 2 385 483 55 143 1.15e-15 79.7
Msa0187640 MtrunA17_Chr7g0265831 39.000 100 50 3 385 483 115 204 6.21e-14 73.9
Msa0187640 MtrunA17_Chr7g0265831 24.542 273 160 8 86 317 96 363 9.81e-11 63.9
Msa0187640 MtrunA17_Chr1g0198171 42.268 97 45 3 385 480 114 200 1.03e-13 73.6
Msa0187640 MtrunA17_Chr1g0179191 38.462 104 53 3 385 487 131 224 4.44e-13 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0187640 AT5G28300.1 40.842 475 168 16 103 483 103 558 6.80e-75 249
Msa0187640 AT1G76890.2 37.363 273 135 9 220 484 243 487 5.80e-40 153
Msa0187640 AT1G76890.2 36.111 144 76 4 385 522 41 174 5.25e-16 81.3
Msa0187640 AT1G33240.2 34.444 270 132 8 244 481 227 483 1.14e-30 126
Msa0187640 AT1G33240.3 34.444 270 132 8 244 481 266 522 1.20e-30 126
Msa0187640 AT1G33240.3 42.708 96 45 2 385 480 62 147 4.68e-17 84.7
Msa0187640 AT1G76880.1 54.000 100 37 2 385 484 408 498 5.92e-27 115
Msa0187640 AT1G76880.1 41.071 112 52 3 376 483 48 149 9.39e-17 84.0
Msa0187640 AT1G33240.1 56.701 97 33 3 385 481 435 522 9.00e-26 112
Msa0187640 AT1G33240.1 42.708 96 45 2 385 480 62 147 3.99e-17 85.1
Msa0187640 AT5G47660.1 30.672 238 137 7 245 481 178 388 2.55e-25 108
Msa0187640 AT3G10000.1 40.000 100 50 3 385 483 88 178 1.64e-14 76.3
Msa0187640 AT5G03680.1 38.384 99 50 3 385 482 119 207 2.13e-13 73.2
Msa0187640 AT5G03680.1 26.800 250 149 11 234 475 284 507 9.51e-12 68.2
Msa0187640 AT3G10000.2 36.364 99 45 3 385 483 88 168 5.74e-12 68.6

Find 124 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATTATTTATGGCTTATT+AGG 0.131965 2_1:-2343574 Msa0187640:five_prime_UTR
AGATTGTTACAAGGATTATT+AGG 0.181963 2_1:+2342288 None:intergenic
AGAAGAAGTAGAGGGAATTA+AGG 0.209713 2_1:+2343255 None:intergenic
TTAGATCACGTTGAAAATTA+TGG 0.221677 2_1:-2341400 Msa0187640:three_prime_UTR
CTTTGTACATTTGCGATATC+TGG 0.223312 2_1:-2341450 Msa0187640:three_prime_UTR
GTTGATTGAATTAGAATTAA+AGG 0.228543 2_1:+2343129 None:intergenic
TGATCAACGGTGGTGGAGTT+TGG 0.283034 2_1:+2343098 None:intergenic
TCTAATTTCTCCATTATTGT+AGG 0.283920 2_1:+2342171 None:intergenic
CCTTGTTGTGCCTACAATAA+TGG 0.294174 2_1:-2342181 Msa0187640:CDS
GAACTGAGTTGATGAAAATA+AGG 0.325543 2_1:+2341877 None:intergenic
TACAATATGACCATTTGAAT+TGG 0.335962 2_1:+2341786 None:intergenic
GTTGAAGGAAATAGTAATAA+AGG 0.341852 2_1:-2342060 Msa0187640:CDS
ATGCGTCATAGAGATCAATT+TGG 0.343924 2_1:-2343644 None:intergenic
GATTGTTACAAGGATTATTA+GGG 0.345761 2_1:+2342289 None:intergenic
TCTGCTATCACATTAGAAAA+AGG 0.348185 2_1:+2342252 None:intergenic
GAATTAAAGGTAGTGGTGTT+AGG 0.362917 2_1:+2343142 None:intergenic
TGCAGTAAGCTAGCTGAGTT+TGG 0.364718 2_1:-2342894 Msa0187640:intron
AGGAGTACTACTAGTCTTCT+TGG 0.365345 2_1:-2343328 Msa0187640:CDS
CGAATCATCTTCTTCGTGTT+GGG 0.376149 2_1:+2342686 None:intergenic
CTTGGTGACTGATGGGAGGA+TGG 0.379091 2_1:-2341511 Msa0187640:three_prime_UTR
GTTGGATGTTTGGTTAATTG+AGG 0.388574 2_1:+2341811 None:intergenic
TGAATTGGAGGTTGGATGTT+TGG 0.388613 2_1:+2341801 None:intergenic
GATCAACGGTGGTGGAGTTT+GGG 0.391573 2_1:+2343099 None:intergenic
CTTCTAAACAAAGCTAAAAG+AGG 0.407587 2_1:-2343519 Msa0187640:five_prime_UTR
TACAATAATGGAGAAATTAG+AGG 0.413562 2_1:-2342169 Msa0187640:CDS
GAAGAAGTAGAGGGAATTAA+GGG 0.418831 2_1:+2343256 None:intergenic
CAGTCTTCTGATTCTCCAAT+GGG 0.423197 2_1:-2341745 Msa0187640:CDS
GTCGTCATCATCACAGTGTT+TGG 0.428860 2_1:+2342644 None:intergenic
TGGGGCAATGATAGTATTGA+TGG 0.430799 2_1:+2343172 None:intergenic
TCGAATCATCTTCTTCGTGT+TGG 0.432686 2_1:+2342685 None:intergenic
TTGGTGACTGATGGGAGGAT+GGG 0.436472 2_1:-2341510 Msa0187640:three_prime_UTR
TCCCATGTGATGAGTTGATC+TGG 0.439124 2_1:+2343004 None:intergenic
CTCTGAAGGGATGTTTGAGT+TGG 0.442279 2_1:-2342019 Msa0187640:CDS
TCAACATTTCAAATCTATCA+AGG 0.442340 2_1:+2342577 None:intergenic
CTTGAAGATCACTAACAAAC+CGG 0.444929 2_1:+2342775 None:intergenic
GTTCAAGAATTCAATGATGT+TGG 0.446172 2_1:+2342365 None:intergenic
TGGTGACTGATGGGAGGATG+GGG 0.447305 2_1:-2341509 Msa0187640:three_prime_UTR
AAGTTCGTCGTTAGTCCAGC+TGG 0.453547 2_1:+2343069 None:intergenic
ATGATGAGGAGAATGAGAAT+TGG 0.461876 2_1:+2343231 None:intergenic
AGAAGCAACAATAATGTTGA+AGG 0.463341 2_1:-2342075 Msa0187640:CDS
TACTCTGTGTCACTTGAGCT+AGG 0.463574 2_1:+2342222 None:intergenic
AATATGACCATTTGAATTGG+AGG 0.468145 2_1:+2341789 None:intergenic
AGAAAAGGTCAACGGATTCA+AGG 0.478087 2_1:-2341906 Msa0187640:CDS
GATCTTCAAGATCTTTATCA+AGG 0.479140 2_1:-2342762 Msa0187640:CDS
TGAATTAGAATTAAAGGTAG+TGG 0.482460 2_1:+2343135 None:intergenic
ATTATTTATGGCTTATTAGG+AGG 0.485768 2_1:-2343571 Msa0187640:five_prime_UTR
GAAGAGTGCTCAAAATTGTA+AGG 0.485968 2_1:-2342865 Msa0187640:CDS
ACGGTGGTGGAGTTTGGGTC+TGG 0.489580 2_1:+2343104 None:intergenic
CATCCAACCTCCAATTCAAA+TGG 0.490841 2_1:-2341796 Msa0187640:CDS
TAGTAATAAAGGACCTTTGT+GGG 0.496078 2_1:-2342049 Msa0187640:CDS
AGAATTGGAAGAAGAAGTAG+AGG 0.498292 2_1:+2343246 None:intergenic
TCAAGAAAAGCTTGCTAGAG+AGG 0.499159 2_1:-2342466 Msa0187640:CDS
TAATGGAGAAATTAGAGGAT+AGG 0.500977 2_1:-2342164 Msa0187640:CDS
AGTGCCAACACTTCATCTCT+TGG 0.501001 2_1:+2342132 None:intergenic
AGAAATTAGAGGATAGGAGA+AGG 0.501494 2_1:-2342158 Msa0187640:CDS
TCTGAAGGGATGTTTGAGTT+GGG 0.503163 2_1:-2342018 Msa0187640:CDS
AGTGGTGTTAGGAGAGTGGT+GGG 0.504430 2_1:+2343153 None:intergenic
CACGGACAGAATGATAGTTA+AGG 0.507146 2_1:+2341362 None:intergenic
TGACCATTTGAATTGGAGGT+TGG 0.512037 2_1:+2341793 None:intergenic
TCAGTCTTCTGATTCTCCAA+TGG 0.512323 2_1:-2341746 Msa0187640:CDS
CTAAAAGAGGAGAGTGTTGT+GGG 0.514492 2_1:-2343506 Msa0187640:five_prime_UTR
TTGTTGTGAATAAGAAGAAA+AGG 0.514743 2_1:-2341921 Msa0187640:CDS
TAGAGGGAATTAAGGGTATG+TGG 0.520931 2_1:+2343263 None:intergenic
ATAGTATTGATGGGTGGAAG+AGG 0.526228 2_1:+2343182 None:intergenic
GAATCGATGATCAACGGTGG+TGG 0.526899 2_1:+2343091 None:intergenic
CGTTGATCATCGATTCCAGC+TGG 0.533603 2_1:-2343084 Msa0187640:CDS
GCAGTAAGCTAGCTGAGTTT+GGG 0.534684 2_1:-2342893 Msa0187640:intron
CAAGATCTTTATCAAGGTGG+TGG 0.535018 2_1:-2342756 Msa0187640:CDS
GCAAACATGTTGGATGAAAG+AGG 0.537737 2_1:-2343376 Msa0187640:exon
ATAAGCAGATGGTGAATTCA+CGG 0.538169 2_1:+2341344 None:intergenic
CCATTATTGTAGGCACAACA+AGG 0.538540 2_1:+2342181 None:intergenic
TCGCAAATGTACAAAGAAGT+AGG 0.540633 2_1:+2341457 None:intergenic
ACTCTGTGTCACTTGAGCTA+GGG 0.543713 2_1:+2342223 None:intergenic
AGGTTTGTTTGAGTTTGAAG+TGG 0.545574 2_1:+2343202 None:intergenic
TGATGACGACAAGGTGATGA+TGG 0.550605 2_1:-2342631 Msa0187640:CDS
AGGTAGTGGTGTTAGGAGAG+TGG 0.552440 2_1:+2343149 None:intergenic
TCGTATTTATACTACCCCAT+TGG 0.554200 2_1:+2341730 None:intergenic
TAGTGGTGTTAGGAGAGTGG+TGG 0.563193 2_1:+2343152 None:intergenic
AGCTTGCTAGAGAGGAAGCA+TGG 0.569276 2_1:-2342458 Msa0187640:CDS
TGCATGTAGAGTAGTAGAGC+TGG 0.574850 2_1:-2343436 Msa0187640:five_prime_UTR
TTGTGGGAGAGAATCTCTGA+AGG 0.575460 2_1:-2342033 Msa0187640:CDS
ATAGTAATAAAGGACCTTTG+TGG 0.578204 2_1:-2342050 Msa0187640:CDS
TCCCAGATCAACTCATCACA+TGG 0.578469 2_1:-2343006 Msa0187640:CDS
CATGCAATCAGTGAATTAGC+CGG 0.579088 2_1:-2341683 Msa0187640:three_prime_UTR
TAACACTTGTAGTAGACTTG+AGG 0.580589 2_1:+2342103 None:intergenic
GAATCAGAAGACTGAGCTTG+AGG 0.581830 2_1:+2341754 None:intergenic
TTGAACAAATATCTAGCCAC+AGG 0.583846 2_1:-2342348 Msa0187640:CDS
AGGCACAACAAGGGTAGAAG+TGG 0.586674 2_1:+2342191 None:intergenic
ATCTGGGAAGAAATTGTGAA+TGG 0.587163 2_1:+2343021 None:intergenic
AATTAAGGGTATGTGGTGGA+AGG 0.587264 2_1:+2343270 None:intergenic
CCCATGTGATGAGTTGATCT+GGG 0.588059 2_1:+2343005 None:intergenic
AGAGGTGGTAGCAAACATGT+TGG 0.589579 2_1:-2343386 Msa0187640:exon
TTTGATTTAAGATTGTTACA+AGG 0.590503 2_1:+2342279 None:intergenic
GCTAAAAGAGGAGAGTGTTG+TGG 0.597554 2_1:-2343507 Msa0187640:five_prime_UTR
GACAAACGAGAGAGAAAGAG+AGG 0.599365 2_1:-2343472 Msa0187640:five_prime_UTR
TTGAAGATCACTAACAAACC+GGG 0.601696 2_1:+2342776 None:intergenic
TCAGAAGACTGAGCTTGAGG+TGG 0.606482 2_1:+2341757 None:intergenic
GTGGCCAAGAGATGAAGTGT+TGG 0.612713 2_1:-2342136 Msa0187640:CDS
TGAAGTGGAAATTGATGATG+AGG 0.617387 2_1:+2343217 None:intergenic
CTTCAAGATCTTTATCAAGG+TGG 0.622674 2_1:-2342759 Msa0187640:CDS
TCACATGGGACCATGTCTCA+AGG 0.623811 2_1:-2342991 Msa0187640:intron
GATTGAAAGGATGAACATGA+TGG 0.625916 2_1:-2342424 Msa0187640:CDS
AATTAGAGGATAGGAGAAGG+TGG 0.625991 2_1:-2342155 Msa0187640:CDS
AGGGAATTAAGGGTATGTGG+TGG 0.633033 2_1:+2343266 None:intergenic
TAATTACGTACCTTGAGACA+TGG 0.636193 2_1:+2342981 None:intergenic
TTTGCTTGGTGACTGATGGG+AGG 0.636516 2_1:-2341515 Msa0187640:three_prime_UTR
ATAATGATAATAATTTCCCC+CGG 0.637802 2_1:-2342794 Msa0187640:CDS
CAGCTGGAATCGATGATCAA+CGG 0.638993 2_1:+2343085 None:intergenic
GAATAAGAAGAAAAGGTCAA+CGG 0.648790 2_1:-2341914 Msa0187640:CDS
TCAGAGATTCTCTCCCACAA+AGG 0.658578 2_1:+2342036 None:intergenic
TGAAGATCACTAACAAACCG+GGG 0.660207 2_1:+2342777 None:intergenic
GGGGCAATGATAGTATTGAT+GGG 0.665761 2_1:+2343173 None:intergenic
TGTGGGAGAGAATCTCTGAA+GGG 0.668713 2_1:-2342032 Msa0187640:CDS
CCCAGATCAACTCATCACAT+GGG 0.681423 2_1:-2343005 Msa0187640:CDS
CATTATTGTAGGCACAACAA+GGG 0.683728 2_1:+2342182 None:intergenic
GAATTGGAAGAAGAAGTAGA+GGG 0.683768 2_1:+2343247 None:intergenic
GCAATGATAGTATTGATGGG+TGG 0.685120 2_1:+2343176 None:intergenic
GATACAAGAGAAGTGCAAAG+AGG 0.707168 2_1:-2341996 Msa0187640:CDS
AGTCTTCTGATTCTCCAATG+GGG 0.718372 2_1:-2341744 Msa0187640:CDS
GAAGATCACTAACAAACCGG+GGG 0.720209 2_1:+2342778 None:intergenic
GTGGTGTTAGGAGAGTGGTG+GGG 0.721834 2_1:+2343154 None:intergenic
CTGGAATCGATGATCAACGG+TGG 0.722514 2_1:+2343088 None:intergenic
AGAAGAAGAAGAATATCCTG+TGG 0.722719 2_1:+2342332 None:intergenic
ACACTGTGATGATGACGACA+AGG 0.746516 2_1:-2342640 Msa0187640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTATTTATGGCTTATT+AGG - chr2_1:2341410-2341429 Msa0187640:three_prime_UTR 15.0%
!!! TAAGTATTTTAAAAAGACAA+AGG - chr2_1:2343037-2343056 Msa0187640:CDS 15.0%
!! AAAATTATTTATGGCTTATT+AGG - chr2_1:2341410-2341429 Msa0187640:three_prime_UTR 15.0%
!!! TAAGTATTTTAAAAAGACAA+AGG - chr2_1:2343037-2343056 Msa0187640:CDS 15.0%
!! CGTCACAAAAAAATTATTTA+TGG - chr2_1:2341401-2341420 Msa0187640:three_prime_UTR 20.0%
!! GTTGATTGAATTAGAATTAA+AGG + chr2_1:2341858-2341877 None:intergenic 20.0%
!! ATAAATGTTTCATTGATCTT+TGG - chr2_1:2342039-2342058 Msa0187640:CDS 20.0%
!!! TTTGATTTAAGATTGTTACA+AGG + chr2_1:2342708-2342727 None:intergenic 20.0%
!!! TCAAAAATATATTTTCTCAC+CGG + chr2_1:2343323-2343342 None:intergenic 20.0%
!! AGTCCAAAAAATTATTAAAG+GGG + chr2_1:2343351-2343370 None:intergenic 20.0%
!! GAGTCCAAAAAATTATTAAA+GGG + chr2_1:2343352-2343371 None:intergenic 20.0%
!! AGAGTCCAAAAAATTATTAA+AGG + chr2_1:2343353-2343372 None:intergenic 20.0%
!!! TTTTGATGGAAGAAAAAAAT+GGG + chr2_1:2343405-2343424 None:intergenic 20.0%
!!! ATTTTGATGGAAGAAAAAAA+TGG + chr2_1:2343406-2343425 None:intergenic 20.0%
!!! AGTTGAACTAATTATTTTGA+TGG + chr2_1:2343419-2343438 None:intergenic 20.0%
!!! TTCTTTTTAATTGTTTTGCT+TGG - chr2_1:2343455-2343474 Msa0187640:five_prime_UTR 20.0%
!! CGTCACAAAAAAATTATTTA+TGG - chr2_1:2341401-2341420 Msa0187640:three_prime_UTR 20.0%
!! GTTGATTGAATTAGAATTAA+AGG + chr2_1:2341858-2341877 None:intergenic 20.0%
!! ATAAATGTTTCATTGATCTT+TGG - chr2_1:2342039-2342058 Msa0187640:CDS 20.0%
!!! TTTGATTTAAGATTGTTACA+AGG + chr2_1:2342708-2342727 None:intergenic 20.0%
!!! TCAAAAATATATTTTCTCAC+CGG + chr2_1:2343323-2343342 None:intergenic 20.0%
!! AGTCCAAAAAATTATTAAAG+GGG + chr2_1:2343351-2343370 None:intergenic 20.0%
!! GAGTCCAAAAAATTATTAAA+GGG + chr2_1:2343352-2343371 None:intergenic 20.0%
!! AGAGTCCAAAAAATTATTAA+AGG + chr2_1:2343353-2343372 None:intergenic 20.0%
!!! TTTTGATGGAAGAAAAAAAT+GGG + chr2_1:2343405-2343424 None:intergenic 20.0%
!!! ATTTTGATGGAAGAAAAAAA+TGG + chr2_1:2343406-2343425 None:intergenic 20.0%
!!! AGTTGAACTAATTATTTTGA+TGG + chr2_1:2343419-2343438 None:intergenic 20.0%
!!! TTCTTTTTAATTGTTTTGCT+TGG - chr2_1:2343455-2343474 Msa0187640:five_prime_UTR 20.0%
! ATTATTTATGGCTTATTAGG+AGG - chr2_1:2341413-2341432 Msa0187640:three_prime_UTR 25.0%
!! ATTTTGAATTTGAGCAATTG+AGG - chr2_1:2341636-2341655 Msa0187640:three_prime_UTR 25.0%
! TGAATTAGAATTAAAGGTAG+TGG + chr2_1:2341852-2341871 None:intergenic 25.0%
! ATAATGATAATAATTTCCCC+CGG - chr2_1:2342190-2342209 Msa0187640:CDS 25.0%
! AGAAATCAAAGAACAAAAAG+AGG - chr2_1:2342376-2342395 Msa0187640:CDS 25.0%
! TCAACATTTCAAATCTATCA+AGG + chr2_1:2342410-2342429 None:intergenic 25.0%
! GATTGTTACAAGGATTATTA+GGG + chr2_1:2342698-2342717 None:intergenic 25.0%
! AGATTGTTACAAGGATTATT+AGG + chr2_1:2342699-2342718 None:intergenic 25.0%
! TCTAATTTCTCCATTATTGT+AGG + chr2_1:2342816-2342835 None:intergenic 25.0%
!! TACAATAATGGAGAAATTAG+AGG - chr2_1:2342815-2342834 Msa0187640:CDS 25.0%
! GTTGAAGGAAATAGTAATAA+AGG - chr2_1:2342924-2342943 Msa0187640:intron 25.0%
!! AAAGAGGTGTAAAGAAAAAT+GGG - chr2_1:2343004-2343023 Msa0187640:CDS 25.0%
! TTGTTGTGAATAAGAAGAAA+AGG - chr2_1:2343063-2343082 Msa0187640:CDS 25.0%
! TACAATATGACCATTTGAAT+TGG + chr2_1:2343201-2343220 None:intergenic 25.0%
!!! TTGCCCCTTTAATAATTTTT+TGG - chr2_1:2343345-2343364 Msa0187640:CDS 25.0%
!!! AGTTTGAATTCGTTTTTACT+TGG - chr2_1:2343379-2343398 Msa0187640:exon 25.0%
! TTAGATCACGTTGAAAATTA+TGG - chr2_1:2343584-2343603 Msa0187640:five_prime_UTR 25.0%
! ATTATTTATGGCTTATTAGG+AGG - chr2_1:2341413-2341432 Msa0187640:three_prime_UTR 25.0%
!! ATTTTGAATTTGAGCAATTG+AGG - chr2_1:2341636-2341655 Msa0187640:three_prime_UTR 25.0%
! TGAATTAGAATTAAAGGTAG+TGG + chr2_1:2341852-2341871 None:intergenic 25.0%
! ATAATGATAATAATTTCCCC+CGG - chr2_1:2342190-2342209 Msa0187640:CDS 25.0%
! AGAAATCAAAGAACAAAAAG+AGG - chr2_1:2342376-2342395 Msa0187640:CDS 25.0%
! TCAACATTTCAAATCTATCA+AGG + chr2_1:2342410-2342429 None:intergenic 25.0%
! GATTGTTACAAGGATTATTA+GGG + chr2_1:2342698-2342717 None:intergenic 25.0%
! AGATTGTTACAAGGATTATT+AGG + chr2_1:2342699-2342718 None:intergenic 25.0%
! TCTAATTTCTCCATTATTGT+AGG + chr2_1:2342816-2342835 None:intergenic 25.0%
!! TACAATAATGGAGAAATTAG+AGG - chr2_1:2342815-2342834 Msa0187640:CDS 25.0%
! GTTGAAGGAAATAGTAATAA+AGG - chr2_1:2342924-2342943 Msa0187640:intron 25.0%
!! AAAGAGGTGTAAAGAAAAAT+GGG - chr2_1:2343004-2343023 Msa0187640:CDS 25.0%
! TTGTTGTGAATAAGAAGAAA+AGG - chr2_1:2343063-2343082 Msa0187640:CDS 25.0%
! TACAATATGACCATTTGAAT+TGG + chr2_1:2343201-2343220 None:intergenic 25.0%
!!! TTGCCCCTTTAATAATTTTT+TGG - chr2_1:2343345-2343364 Msa0187640:CDS 25.0%
!!! AGTTTGAATTCGTTTTTACT+TGG - chr2_1:2343379-2343398 Msa0187640:exon 25.0%
! TTAGATCACGTTGAAAATTA+TGG - chr2_1:2343584-2343603 Msa0187640:five_prime_UTR 25.0%
! GATTTTGTGATGTGAAAAGA+GGG - chr2_1:2341362-2341381 Msa0187640:three_prime_UTR 30.0%
CTTCTAAACAAAGCTAAAAG+AGG - chr2_1:2341465-2341484 Msa0187640:three_prime_UTR 30.0%
GATCTTCAAGATCTTTATCA+AGG - chr2_1:2342222-2342241 Msa0187640:CDS 30.0%
GGAAAAAACAAGAGATTGAA+AGG - chr2_1:2342547-2342566 Msa0187640:CDS 30.0%
GTTCAAGAATTCAATGATGT+TGG + chr2_1:2342622-2342641 None:intergenic 30.0%
TCTGCTATCACATTAGAAAA+AGG + chr2_1:2342735-2342754 None:intergenic 30.0%
TAATGGAGAAATTAGAGGAT+AGG - chr2_1:2342820-2342839 Msa0187640:CDS 30.0%
AGAAGCAACAATAATGTTGA+AGG - chr2_1:2342909-2342928 Msa0187640:intron 30.0%
ATAGTAATAAAGGACCTTTG+TGG - chr2_1:2342934-2342953 Msa0187640:intron 30.0%
TAGTAATAAAGGACCTTTGT+GGG - chr2_1:2342935-2342954 Msa0187640:intron 30.0%
! CAAAGAGGTGTAAAGAAAAA+TGG - chr2_1:2343003-2343022 Msa0187640:CDS 30.0%
GAATAAGAAGAAAAGGTCAA+CGG - chr2_1:2343070-2343089 Msa0187640:CDS 30.0%
!! GAACTGAGTTGATGAAAATA+AGG + chr2_1:2343110-2343129 None:intergenic 30.0%
AATATGACCATTTGAATTGG+AGG + chr2_1:2343198-2343217 None:intergenic 30.0%
ACATCACAAAATCCAAATTG+AGG + chr2_1:2341355-2341374 None:intergenic 30.0%
! GATTTTGTGATGTGAAAAGA+GGG - chr2_1:2341362-2341381 Msa0187640:three_prime_UTR 30.0%
CTTCTAAACAAAGCTAAAAG+AGG - chr2_1:2341465-2341484 Msa0187640:three_prime_UTR 30.0%
GATCTTCAAGATCTTTATCA+AGG - chr2_1:2342222-2342241 Msa0187640:CDS 30.0%
GGAAAAAACAAGAGATTGAA+AGG - chr2_1:2342547-2342566 Msa0187640:CDS 30.0%
GTTCAAGAATTCAATGATGT+TGG + chr2_1:2342622-2342641 None:intergenic 30.0%
TCTGCTATCACATTAGAAAA+AGG + chr2_1:2342735-2342754 None:intergenic 30.0%
TAATGGAGAAATTAGAGGAT+AGG - chr2_1:2342820-2342839 Msa0187640:CDS 30.0%
AGAAGCAACAATAATGTTGA+AGG - chr2_1:2342909-2342928 Msa0187640:intron 30.0%
ATAGTAATAAAGGACCTTTG+TGG - chr2_1:2342934-2342953 Msa0187640:intron 30.0%
TAGTAATAAAGGACCTTTGT+GGG - chr2_1:2342935-2342954 Msa0187640:intron 30.0%
! CAAAGAGGTGTAAAGAAAAA+TGG - chr2_1:2343003-2343022 Msa0187640:CDS 30.0%
GAATAAGAAGAAAAGGTCAA+CGG - chr2_1:2343070-2343089 Msa0187640:CDS 30.0%
!! GAACTGAGTTGATGAAAATA+AGG + chr2_1:2343110-2343129 None:intergenic 30.0%
AATATGACCATTTGAATTGG+AGG + chr2_1:2343198-2343217 None:intergenic 30.0%
! GGATTTTGTGATGTGAAAAG+AGG - chr2_1:2341361-2341380 Msa0187640:three_prime_UTR 35.0%
GTAGCTGAGTTTGAAAAAAG+AGG - chr2_1:2341580-2341599 Msa0187640:three_prime_UTR 35.0%
GAAGAAGTAGAGGGAATTAA+GGG + chr2_1:2341731-2341750 None:intergenic 35.0%
AGAAGAAGTAGAGGGAATTA+AGG + chr2_1:2341732-2341751 None:intergenic 35.0%
GAATTGGAAGAAGAAGTAGA+GGG + chr2_1:2341740-2341759 None:intergenic 35.0%
AGAATTGGAAGAAGAAGTAG+AGG + chr2_1:2341741-2341760 None:intergenic 35.0%
ATGATGAGGAGAATGAGAAT+TGG + chr2_1:2341756-2341775 None:intergenic 35.0%
!! TGAAGTGGAAATTGATGATG+AGG + chr2_1:2341770-2341789 None:intergenic 35.0%
! AGGTTTGTTTGAGTTTGAAG+TGG + chr2_1:2341785-2341804 None:intergenic 35.0%
! GAATTAAAGGTAGTGGTGTT+AGG + chr2_1:2341845-2341864 None:intergenic 35.0%
ATCTGGGAAGAAATTGTGAA+TGG + chr2_1:2341966-2341985 None:intergenic 35.0%
TAATTACGTACCTTGAGACA+TGG + chr2_1:2342006-2342025 None:intergenic 35.0%
TTACTGCACACATCATCATA+AGG + chr2_1:2342078-2342097 None:intergenic 35.0%
!! GAAGAGTGCTCAAAATTGTA+AGG - chr2_1:2342119-2342138 Msa0187640:CDS 35.0%
TTGAAGATCACTAACAAACC+GGG + chr2_1:2342211-2342230 None:intergenic 35.0%
CTTGAAGATCACTAACAAAC+CGG + chr2_1:2342212-2342231 None:intergenic 35.0%
CTTCAAGATCTTTATCAAGG+TGG - chr2_1:2342225-2342244 Msa0187640:CDS 35.0%
!!! TTTTTGTTTTCGTCAGGGTT+TGG + chr2_1:2342276-2342295 None:intergenic 35.0%
!!! GGGTATTTTTGTTTTCGTCA+GGG + chr2_1:2342281-2342300 None:intergenic 35.0%
!!! TGGGTATTTTTGTTTTCGTC+AGG + chr2_1:2342282-2342301 None:intergenic 35.0%
CAAAGAACAAAAAGAGGAAG+AGG - chr2_1:2342382-2342401 Msa0187640:CDS 35.0%
GATTGAAAGGATGAACATGA+TGG - chr2_1:2342560-2342579 Msa0187640:CDS 35.0%
TTGAACAAATATCTAGCCAC+AGG - chr2_1:2342636-2342655 Msa0187640:CDS 35.0%
AGAAGAAGAAGAATATCCTG+TGG + chr2_1:2342655-2342674 None:intergenic 35.0%
CATTATTGTAGGCACAACAA+GGG + chr2_1:2342805-2342824 None:intergenic 35.0%
AGAAATTAGAGGATAGGAGA+AGG - chr2_1:2342826-2342845 Msa0187640:CDS 35.0%
TAACACTTGTAGTAGACTTG+AGG + chr2_1:2342884-2342903 None:intergenic 35.0%
GTTGGATGTTTGGTTAATTG+AGG + chr2_1:2343176-2343195 None:intergenic 35.0%
TCGTATTTATACTACCCCAT+TGG + chr2_1:2343257-2343276 None:intergenic 35.0%
TCGCAAATGTACAAAGAAGT+AGG + chr2_1:2343530-2343549 None:intergenic 35.0%
CTTTGTACATTTGCGATATC+TGG - chr2_1:2343534-2343553 Msa0187640:five_prime_UTR 35.0%
! GGATTTTGTGATGTGAAAAG+AGG - chr2_1:2341361-2341380 Msa0187640:three_prime_UTR 35.0%
GTAGCTGAGTTTGAAAAAAG+AGG - chr2_1:2341580-2341599 Msa0187640:three_prime_UTR 35.0%
GAAGAAGTAGAGGGAATTAA+GGG + chr2_1:2341731-2341750 None:intergenic 35.0%
AGAAGAAGTAGAGGGAATTA+AGG + chr2_1:2341732-2341751 None:intergenic 35.0%
GAATTGGAAGAAGAAGTAGA+GGG + chr2_1:2341740-2341759 None:intergenic 35.0%
AGAATTGGAAGAAGAAGTAG+AGG + chr2_1:2341741-2341760 None:intergenic 35.0%
ATGATGAGGAGAATGAGAAT+TGG + chr2_1:2341756-2341775 None:intergenic 35.0%
!! TGAAGTGGAAATTGATGATG+AGG + chr2_1:2341770-2341789 None:intergenic 35.0%
! AGGTTTGTTTGAGTTTGAAG+TGG + chr2_1:2341785-2341804 None:intergenic 35.0%
! GAATTAAAGGTAGTGGTGTT+AGG + chr2_1:2341845-2341864 None:intergenic 35.0%
ATCTGGGAAGAAATTGTGAA+TGG + chr2_1:2341966-2341985 None:intergenic 35.0%
TAATTACGTACCTTGAGACA+TGG + chr2_1:2342006-2342025 None:intergenic 35.0%
TTACTGCACACATCATCATA+AGG + chr2_1:2342078-2342097 None:intergenic 35.0%
!! GAAGAGTGCTCAAAATTGTA+AGG - chr2_1:2342119-2342138 Msa0187640:CDS 35.0%
TTGAAGATCACTAACAAACC+GGG + chr2_1:2342211-2342230 None:intergenic 35.0%
CTTGAAGATCACTAACAAAC+CGG + chr2_1:2342212-2342231 None:intergenic 35.0%
CTTCAAGATCTTTATCAAGG+TGG - chr2_1:2342225-2342244 Msa0187640:CDS 35.0%
!!! TTTTTGTTTTCGTCAGGGTT+TGG + chr2_1:2342276-2342295 None:intergenic 35.0%
!!! GGGTATTTTTGTTTTCGTCA+GGG + chr2_1:2342281-2342300 None:intergenic 35.0%
!!! TGGGTATTTTTGTTTTCGTC+AGG + chr2_1:2342282-2342301 None:intergenic 35.0%
CAAAGAACAAAAAGAGGAAG+AGG - chr2_1:2342382-2342401 Msa0187640:CDS 35.0%
GATTGAAAGGATGAACATGA+TGG - chr2_1:2342560-2342579 Msa0187640:CDS 35.0%
TTGAACAAATATCTAGCCAC+AGG - chr2_1:2342636-2342655 Msa0187640:CDS 35.0%
AGAAGAAGAAGAATATCCTG+TGG + chr2_1:2342655-2342674 None:intergenic 35.0%
CATTATTGTAGGCACAACAA+GGG + chr2_1:2342805-2342824 None:intergenic 35.0%
AGAAATTAGAGGATAGGAGA+AGG - chr2_1:2342826-2342845 Msa0187640:CDS 35.0%
TAACACTTGTAGTAGACTTG+AGG + chr2_1:2342884-2342903 None:intergenic 35.0%
GTTGGATGTTTGGTTAATTG+AGG + chr2_1:2343176-2343195 None:intergenic 35.0%
TCGTATTTATACTACCCCAT+TGG + chr2_1:2343257-2343276 None:intergenic 35.0%
TCGCAAATGTACAAAGAAGT+AGG + chr2_1:2343530-2343549 None:intergenic 35.0%
CTTTGTACATTTGCGATATC+TGG - chr2_1:2343534-2343553 Msa0187640:five_prime_UTR 35.0%
!! CTAAAAGAGGAGAGTGTTGT+GGG - chr2_1:2341478-2341497 Msa0187640:three_prime_UTR 40.0%
GCTGAGTTTGAAAAAAGAGG+TGG - chr2_1:2341583-2341602 Msa0187640:three_prime_UTR 40.0%
GCAAACATGTTGGATGAAAG+AGG - chr2_1:2341608-2341627 Msa0187640:three_prime_UTR 40.0%
!! AGGAGTACTACTAGTCTTCT+TGG - chr2_1:2341656-2341675 Msa0187640:three_prime_UTR 40.0%
! AATTAAGGGTATGTGGTGGA+AGG + chr2_1:2341717-2341736 None:intergenic 40.0%
! TAGAGGGAATTAAGGGTATG+TGG + chr2_1:2341724-2341743 None:intergenic 40.0%
!! ATAGTATTGATGGGTGGAAG+AGG + chr2_1:2341805-2341824 None:intergenic 40.0%
!! GCAATGATAGTATTGATGGG+TGG + chr2_1:2341811-2341830 None:intergenic 40.0%
!! GGGGCAATGATAGTATTGAT+GGG + chr2_1:2341814-2341833 None:intergenic 40.0%
! TGGGGCAATGATAGTATTGA+TGG + chr2_1:2341815-2341834 None:intergenic 40.0%
TGAAGATCACTAACAAACCG+GGG + chr2_1:2342210-2342229 None:intergenic 40.0%
CAAGATCTTTATCAAGGTGG+TGG - chr2_1:2342228-2342247 Msa0187640:CDS 40.0%
CGAATCATCTTCTTCGTGTT+GGG + chr2_1:2342301-2342320 None:intergenic 40.0%
TCGAATCATCTTCTTCGTGT+TGG + chr2_1:2342302-2342321 None:intergenic 40.0%
! GAAGAGTTTTTGTGAGACAG+TGG - chr2_1:2342428-2342447 Msa0187640:CDS 40.0%
!! TCAAGAAAAGCTTGCTAGAG+AGG - chr2_1:2342518-2342537 Msa0187640:CDS 40.0%
CCATTATTGTAGGCACAACA+AGG + chr2_1:2342806-2342825 None:intergenic 40.0%
! CCTTGTTGTGCCTACAATAA+TGG - chr2_1:2342803-2342822 Msa0187640:CDS 40.0%
AATTAGAGGATAGGAGAAGG+TGG - chr2_1:2342829-2342848 Msa0187640:CDS 40.0%
! TCTGAAGGGATGTTTGAGTT+GGG - chr2_1:2342966-2342985 Msa0187640:intron 40.0%
! GATACAAGAGAAGTGCAAAG+AGG - chr2_1:2342988-2343007 Msa0187640:intron 40.0%
! AGAAAAGGTCAACGGATTCA+AGG - chr2_1:2343078-2343097 Msa0187640:CDS 40.0%
TGAATTGGAGGTTGGATGTT+TGG + chr2_1:2343186-2343205 None:intergenic 40.0%
CATCCAACCTCCAATTCAAA+TGG - chr2_1:2343188-2343207 Msa0187640:CDS 40.0%
TGACCATTTGAATTGGAGGT+TGG + chr2_1:2343194-2343213 None:intergenic 40.0%
TCAGTCTTCTGATTCTCCAA+TGG - chr2_1:2343238-2343257 Msa0187640:CDS 40.0%
CAGTCTTCTGATTCTCCAAT+GGG - chr2_1:2343239-2343258 Msa0187640:CDS 40.0%
AGTCTTCTGATTCTCCAATG+GGG - chr2_1:2343240-2343259 Msa0187640:CDS 40.0%
CATGCAATCAGTGAATTAGC+CGG - chr2_1:2343301-2343320 Msa0187640:CDS 40.0%
!! TTGTTTTGCTTGGTGACTGA+TGG - chr2_1:2343465-2343484 Msa0187640:five_prime_UTR 40.0%
!! TGTTTTGCTTGGTGACTGAT+GGG - chr2_1:2343466-2343485 Msa0187640:five_prime_UTR 40.0%
CACGGACAGAATGATAGTTA+AGG + chr2_1:2343625-2343644 None:intergenic 40.0%
!! CTAAAAGAGGAGAGTGTTGT+GGG - chr2_1:2341478-2341497 Msa0187640:three_prime_UTR 40.0%
GCTGAGTTTGAAAAAAGAGG+TGG - chr2_1:2341583-2341602 Msa0187640:three_prime_UTR 40.0%
GCAAACATGTTGGATGAAAG+AGG - chr2_1:2341608-2341627 Msa0187640:three_prime_UTR 40.0%
!! AGGAGTACTACTAGTCTTCT+TGG - chr2_1:2341656-2341675 Msa0187640:three_prime_UTR 40.0%
! AATTAAGGGTATGTGGTGGA+AGG + chr2_1:2341717-2341736 None:intergenic 40.0%
! TAGAGGGAATTAAGGGTATG+TGG + chr2_1:2341724-2341743 None:intergenic 40.0%
!! ATAGTATTGATGGGTGGAAG+AGG + chr2_1:2341805-2341824 None:intergenic 40.0%
!! GCAATGATAGTATTGATGGG+TGG + chr2_1:2341811-2341830 None:intergenic 40.0%
!! GGGGCAATGATAGTATTGAT+GGG + chr2_1:2341814-2341833 None:intergenic 40.0%
! TGGGGCAATGATAGTATTGA+TGG + chr2_1:2341815-2341834 None:intergenic 40.0%
TGAAGATCACTAACAAACCG+GGG + chr2_1:2342210-2342229 None:intergenic 40.0%
CAAGATCTTTATCAAGGTGG+TGG - chr2_1:2342228-2342247 Msa0187640:CDS 40.0%
CGAATCATCTTCTTCGTGTT+GGG + chr2_1:2342301-2342320 None:intergenic 40.0%
TCGAATCATCTTCTTCGTGT+TGG + chr2_1:2342302-2342321 None:intergenic 40.0%
! GAAGAGTTTTTGTGAGACAG+TGG - chr2_1:2342428-2342447 Msa0187640:CDS 40.0%
!! TCAAGAAAAGCTTGCTAGAG+AGG - chr2_1:2342518-2342537 Msa0187640:CDS 40.0%
CCATTATTGTAGGCACAACA+AGG + chr2_1:2342806-2342825 None:intergenic 40.0%
! CCTTGTTGTGCCTACAATAA+TGG - chr2_1:2342803-2342822 Msa0187640:CDS 40.0%
AATTAGAGGATAGGAGAAGG+TGG - chr2_1:2342829-2342848 Msa0187640:CDS 40.0%
! TCTGAAGGGATGTTTGAGTT+GGG - chr2_1:2342966-2342985 Msa0187640:intron 40.0%
! GATACAAGAGAAGTGCAAAG+AGG - chr2_1:2342988-2343007 Msa0187640:intron 40.0%
! AGAAAAGGTCAACGGATTCA+AGG - chr2_1:2343078-2343097 Msa0187640:CDS 40.0%
TGAATTGGAGGTTGGATGTT+TGG + chr2_1:2343186-2343205 None:intergenic 40.0%
CATCCAACCTCCAATTCAAA+TGG - chr2_1:2343188-2343207 Msa0187640:CDS 40.0%
TGACCATTTGAATTGGAGGT+TGG + chr2_1:2343194-2343213 None:intergenic 40.0%
TCAGTCTTCTGATTCTCCAA+TGG - chr2_1:2343238-2343257 Msa0187640:CDS 40.0%
CAGTCTTCTGATTCTCCAAT+GGG - chr2_1:2343239-2343258 Msa0187640:CDS 40.0%
AGTCTTCTGATTCTCCAATG+GGG - chr2_1:2343240-2343259 Msa0187640:CDS 40.0%
CATGCAATCAGTGAATTAGC+CGG - chr2_1:2343301-2343320 Msa0187640:CDS 40.0%
!! TTGTTTTGCTTGGTGACTGA+TGG - chr2_1:2343465-2343484 Msa0187640:five_prime_UTR 40.0%
!! TGTTTTGCTTGGTGACTGAT+GGG - chr2_1:2343466-2343485 Msa0187640:five_prime_UTR 40.0%
CACGGACAGAATGATAGTTA+AGG + chr2_1:2343625-2343644 None:intergenic 40.0%
!! GCTAAAAGAGGAGAGTGTTG+TGG - chr2_1:2341477-2341496 Msa0187640:three_prime_UTR 45.0%
GACAAACGAGAGAGAAAGAG+AGG - chr2_1:2341512-2341531 Msa0187640:three_prime_UTR 45.0%
TGCATGTAGAGTAGTAGAGC+TGG - chr2_1:2341548-2341567 Msa0187640:three_prime_UTR 45.0%
AGAGGTGGTAGCAAACATGT+TGG - chr2_1:2341598-2341617 Msa0187640:three_prime_UTR 45.0%
! AGGGAATTAAGGGTATGTGG+TGG + chr2_1:2341721-2341740 None:intergenic 45.0%
CAGCTGGAATCGATGATCAA+CGG + chr2_1:2341902-2341921 None:intergenic 45.0%
TCCCAGATCAACTCATCACA+TGG - chr2_1:2341978-2341997 Msa0187640:CDS 45.0%
!! CCCATGTGATGAGTTGATCT+GGG + chr2_1:2341982-2342001 None:intergenic 45.0%
CCCAGATCAACTCATCACAT+GGG - chr2_1:2341979-2341998 Msa0187640:CDS 45.0%
!! TCCCATGTGATGAGTTGATC+TGG + chr2_1:2341983-2342002 None:intergenic 45.0%
TGCAGTAAGCTAGCTGAGTT+TGG - chr2_1:2342090-2342109 Msa0187640:CDS 45.0%
GCAGTAAGCTAGCTGAGTTT+GGG - chr2_1:2342091-2342110 Msa0187640:CDS 45.0%
GAAGATCACTAACAAACCGG+GGG + chr2_1:2342209-2342228 None:intergenic 45.0%
GTCGTCATCATCACAGTGTT+TGG + chr2_1:2342343-2342362 None:intergenic 45.0%
! ACACTGTGATGATGACGACA+AGG - chr2_1:2342344-2342363 Msa0187640:CDS 45.0%
! TGATGACGACAAGGTGATGA+TGG - chr2_1:2342353-2342372 Msa0187640:CDS 45.0%
!! ACTCTGTGTCACTTGAGCTA+GGG + chr2_1:2342764-2342783 None:intergenic 45.0%
!! TACTCTGTGTCACTTGAGCT+AGG + chr2_1:2342765-2342784 None:intergenic 45.0%
AGTGCCAACACTTCATCTCT+TGG + chr2_1:2342855-2342874 None:intergenic 45.0%
TCAGAGATTCTCTCCCACAA+AGG + chr2_1:2342951-2342970 None:intergenic 45.0%
TTGTGGGAGAGAATCTCTGA+AGG - chr2_1:2342951-2342970 Msa0187640:intron 45.0%
TGTGGGAGAGAATCTCTGAA+GGG - chr2_1:2342952-2342971 Msa0187640:intron 45.0%
! CTCTGAAGGGATGTTTGAGT+TGG - chr2_1:2342965-2342984 Msa0187640:intron 45.0%
GAATCAGAAGACTGAGCTTG+AGG + chr2_1:2343233-2343252 None:intergenic 45.0%
!! GCTAAAAGAGGAGAGTGTTG+TGG - chr2_1:2341477-2341496 Msa0187640:three_prime_UTR 45.0%
GACAAACGAGAGAGAAAGAG+AGG - chr2_1:2341512-2341531 Msa0187640:three_prime_UTR 45.0%
TGCATGTAGAGTAGTAGAGC+TGG - chr2_1:2341548-2341567 Msa0187640:three_prime_UTR 45.0%
AGAGGTGGTAGCAAACATGT+TGG - chr2_1:2341598-2341617 Msa0187640:three_prime_UTR 45.0%
! AGGGAATTAAGGGTATGTGG+TGG + chr2_1:2341721-2341740 None:intergenic 45.0%
CAGCTGGAATCGATGATCAA+CGG + chr2_1:2341902-2341921 None:intergenic 45.0%
TCCCAGATCAACTCATCACA+TGG - chr2_1:2341978-2341997 Msa0187640:CDS 45.0%
!! CCCATGTGATGAGTTGATCT+GGG + chr2_1:2341982-2342001 None:intergenic 45.0%
CCCAGATCAACTCATCACAT+GGG - chr2_1:2341979-2341998 Msa0187640:CDS 45.0%
!! TCCCATGTGATGAGTTGATC+TGG + chr2_1:2341983-2342002 None:intergenic 45.0%
TGCAGTAAGCTAGCTGAGTT+TGG - chr2_1:2342090-2342109 Msa0187640:CDS 45.0%
GCAGTAAGCTAGCTGAGTTT+GGG - chr2_1:2342091-2342110 Msa0187640:CDS 45.0%
GAAGATCACTAACAAACCGG+GGG + chr2_1:2342209-2342228 None:intergenic 45.0%
GTCGTCATCATCACAGTGTT+TGG + chr2_1:2342343-2342362 None:intergenic 45.0%
! ACACTGTGATGATGACGACA+AGG - chr2_1:2342344-2342363 Msa0187640:CDS 45.0%
! TGATGACGACAAGGTGATGA+TGG - chr2_1:2342353-2342372 Msa0187640:CDS 45.0%
!! ACTCTGTGTCACTTGAGCTA+GGG + chr2_1:2342764-2342783 None:intergenic 45.0%
!! TACTCTGTGTCACTTGAGCT+AGG + chr2_1:2342765-2342784 None:intergenic 45.0%
AGTGCCAACACTTCATCTCT+TGG + chr2_1:2342855-2342874 None:intergenic 45.0%
TCAGAGATTCTCTCCCACAA+AGG + chr2_1:2342951-2342970 None:intergenic 45.0%
TTGTGGGAGAGAATCTCTGA+AGG - chr2_1:2342951-2342970 Msa0187640:intron 45.0%
TGTGGGAGAGAATCTCTGAA+GGG - chr2_1:2342952-2342971 Msa0187640:intron 45.0%
! CTCTGAAGGGATGTTTGAGT+TGG - chr2_1:2342965-2342984 Msa0187640:intron 45.0%
GAATCAGAAGACTGAGCTTG+AGG + chr2_1:2343233-2343252 None:intergenic 45.0%
! AGTGGTGTTAGGAGAGTGGT+GGG + chr2_1:2341834-2341853 None:intergenic 50.0%
! TAGTGGTGTTAGGAGAGTGG+TGG + chr2_1:2341835-2341854 None:intergenic 50.0%
! AGGTAGTGGTGTTAGGAGAG+TGG + chr2_1:2341838-2341857 None:intergenic 50.0%
!! GATCAACGGTGGTGGAGTTT+GGG + chr2_1:2341888-2341907 None:intergenic 50.0%
!! TGATCAACGGTGGTGGAGTT+TGG + chr2_1:2341889-2341908 None:intergenic 50.0%
GAATCGATGATCAACGGTGG+TGG + chr2_1:2341896-2341915 None:intergenic 50.0%
CTGGAATCGATGATCAACGG+TGG + chr2_1:2341899-2341918 None:intergenic 50.0%
!! CGTTGATCATCGATTCCAGC+TGG - chr2_1:2341900-2341919 Msa0187640:CDS 50.0%
AAGTTCGTCGTTAGTCCAGC+TGG + chr2_1:2341918-2341937 None:intergenic 50.0%
TCACATGGGACCATGTCTCA+AGG - chr2_1:2341993-2342012 Msa0187640:CDS 50.0%
!! AGCTTGCTAGAGAGGAAGCA+TGG - chr2_1:2342526-2342545 Msa0187640:CDS 50.0%
AGGCACAACAAGGGTAGAAG+TGG + chr2_1:2342796-2342815 None:intergenic 50.0%
GTGGCCAAGAGATGAAGTGT+TGG - chr2_1:2342848-2342867 Msa0187640:CDS 50.0%
TCAGAAGACTGAGCTTGAGG+TGG + chr2_1:2343230-2343249 None:intergenic 50.0%
! TTTGCTTGGTGACTGATGGG+AGG - chr2_1:2343469-2343488 Msa0187640:five_prime_UTR 50.0%
! TTGGTGACTGATGGGAGGAT+GGG - chr2_1:2343474-2343493 Msa0187640:five_prime_UTR 50.0%
! AGTGGTGTTAGGAGAGTGGT+GGG + chr2_1:2341834-2341853 None:intergenic 50.0%
! TAGTGGTGTTAGGAGAGTGG+TGG + chr2_1:2341835-2341854 None:intergenic 50.0%
! AGGTAGTGGTGTTAGGAGAG+TGG + chr2_1:2341838-2341857 None:intergenic 50.0%
!! GATCAACGGTGGTGGAGTTT+GGG + chr2_1:2341888-2341907 None:intergenic 50.0%
!! TGATCAACGGTGGTGGAGTT+TGG + chr2_1:2341889-2341908 None:intergenic 50.0%
GAATCGATGATCAACGGTGG+TGG + chr2_1:2341896-2341915 None:intergenic 50.0%
CTGGAATCGATGATCAACGG+TGG + chr2_1:2341899-2341918 None:intergenic 50.0%
!! CGTTGATCATCGATTCCAGC+TGG - chr2_1:2341900-2341919 Msa0187640:CDS 50.0%
AAGTTCGTCGTTAGTCCAGC+TGG + chr2_1:2341918-2341937 None:intergenic 50.0%
TCACATGGGACCATGTCTCA+AGG - chr2_1:2341993-2342012 Msa0187640:CDS 50.0%
!! AGCTTGCTAGAGAGGAAGCA+TGG - chr2_1:2342526-2342545 Msa0187640:CDS 50.0%
AGGCACAACAAGGGTAGAAG+TGG + chr2_1:2342796-2342815 None:intergenic 50.0%
GTGGCCAAGAGATGAAGTGT+TGG - chr2_1:2342848-2342867 Msa0187640:CDS 50.0%
TCAGAAGACTGAGCTTGAGG+TGG + chr2_1:2343230-2343249 None:intergenic 50.0%
! TTTGCTTGGTGACTGATGGG+AGG - chr2_1:2343469-2343488 Msa0187640:five_prime_UTR 50.0%
! TTGGTGACTGATGGGAGGAT+GGG - chr2_1:2343474-2343493 Msa0187640:five_prime_UTR 50.0%
! GTGGTGTTAGGAGAGTGGTG+GGG + chr2_1:2341833-2341852 None:intergenic 55.0%
TAATCAGCAGCAGCAGCAGC+AGG - chr2_1:2343136-2343155 Msa0187640:CDS 55.0%
AATCAGCAGCAGCAGCAGCA+GGG - chr2_1:2343137-2343156 Msa0187640:CDS 55.0%
! CTTGGTGACTGATGGGAGGA+TGG - chr2_1:2343473-2343492 Msa0187640:five_prime_UTR 55.0%
TGGTGACTGATGGGAGGATG+GGG - chr2_1:2343475-2343494 Msa0187640:five_prime_UTR 55.0%
! GTGGTGTTAGGAGAGTGGTG+GGG + chr2_1:2341833-2341852 None:intergenic 55.0%
TAATCAGCAGCAGCAGCAGC+AGG - chr2_1:2343136-2343155 Msa0187640:CDS 55.0%
AATCAGCAGCAGCAGCAGCA+GGG - chr2_1:2343137-2343156 Msa0187640:CDS 55.0%
! CTTGGTGACTGATGGGAGGA+TGG - chr2_1:2343473-2343492 Msa0187640:five_prime_UTR 55.0%
TGGTGACTGATGGGAGGATG+GGG - chr2_1:2343475-2343494 Msa0187640:five_prime_UTR 55.0%
!! ACGGTGGTGGAGTTTGGGTC+TGG + chr2_1:2341883-2341902 None:intergenic 60.0%
!! ACGGTGGTGGAGTTTGGGTC+TGG + chr2_1:2341883-2341902 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 2341354 2343652 2341354 ID=Msa0187640;Name=Msa0187640
chr2_1 mRNA 2341354 2343652 2341354 ID=Msa0187640-mRNA-1;Parent=Msa0187640;Name=Msa0187640-mRNA-1;_AED=0.01;_eAED=0.01;_QI=260|1|1|1|1|1|2|387|523
chr2_1 exon 2341354 2342911 2341354 ID=Msa0187640-mRNA-1:exon:1103;Parent=Msa0187640-mRNA-1
chr2_1 exon 2342992 2343652 2342992 ID=Msa0187640-mRNA-1:exon:1102;Parent=Msa0187640-mRNA-1
chr2_1 five_prime_UTR 2343393 2343652 2343393 ID=Msa0187640-mRNA-1:five_prime_utr;Parent=Msa0187640-mRNA-1
chr2_1 CDS 2342992 2343392 2342992 ID=Msa0187640-mRNA-1:cds;Parent=Msa0187640-mRNA-1
chr2_1 CDS 2341741 2342911 2341741 ID=Msa0187640-mRNA-1:cds;Parent=Msa0187640-mRNA-1
chr2_1 three_prime_UTR 2341354 2341740 2341354 ID=Msa0187640-mRNA-1:three_prime_utr;Parent=Msa0187640-mRNA-1
Gene Sequence

>Msa0187640

ATGTTGGATGAAAGAGGAAAGCATTTTGAATTTGAGCAATTGAGGAGTACTACTAGTCTTCTTGGTTCGTCTTCTTCTTCTGTTGCAAACATCAACAGCACCTTCCACCACATACCCTTAATTCCCTCTACTTCTTCTTCCAATTCTCATTCTCCTCATCATCAATTTCCACTTCAAACTCAAACAAACCTCTTCCACCCATCAATACTATCATTGCCCCACCACTCTCCTAACACCACTACCTTTAATTCTAATTCAATCAACTTCCAGACCCAAACTCCACCACCGTTGATCATCGATTCCAGCTGGACTAACGACGAACTTCTTCTACTCTTCAAGATCACATCTACCATTCACAATTTCTTCCCAGATCAACTCATCACATGGGACCATGTCTCAAGTAAGCTAGCTGAGTTTGGGATCAAGAAGAGTGCTCAAAATTGTAAGGAGAAGTTTGAACATGAGAACACATCATTTATGAAGATTCATAACAATCATAATGATAATAATTTCCCCCGGTTTGTTAGTGATCTTCAAGATCTTTATCAAGGTGGTGGTGTTAGTGTTGATAATAAACAACCAAACCCTGACGAAAACAAAAATACCCAACACGAAGAAGATGATTCGAGAGATGATAGAGTAGAGACCAAACACTGTGATGATGACGACAAGGTGATGATGGAGAAATCAAAGAACAAAAAGAGGAAGAGGCGCCTTGATAGATTTGAAATGTTGAAGAGTTTTTGTGAGACAGTGGTTAACAAAATAATTGCACAACAAGAAGAAATACACAATAAGCTACTTGAAGACATGCTCAAAAGAGATCAAGAAAAGCTTGCTAGAGAGGAAGCATGGAAAAAACAAGAGATTGAAAGGATGAACATGATGGTACAACAACAACAAGCTATTGCAAGTGATAGACAAGCCAACATCATTGAATTCTTGAACAAATATCTAGCCACAGGATATTCTTCTTCTTCTTCACAATTGCACTCACAAAACCCTAATAATCCTTGTAACAATCTTAAATCAAAAACACCTTTTTCTAATGTGATAGCAGATCAAAACCCTAGCTCAAGTGACACAGAGTACTCAAATTCCACTTCTACCCTTGTTGTGCCTACAATAATGGAGAAATTAGAGGATAGGAGAAGGTGGCCAAGAGATGAAGTGTTGGCACTCATAAACCTCAAGTCTACTACAAGTGTTACAAACAGAAGCAACAATAATGTTGAAGGAAATAGTAATAAAGGACCTTTGTGGGAGAGAATCTCTGAAGGGATGTTTGAGTTGGGATACAAGAGAAGTGCAAAGAGGTGTAAAGAAAAATGGGAAAACATAAATAAGTATTTTAAAAAGACAAAGGATATTGTTGTGAATAAGAAGAAAAGGTCAACGGATTCAAGGACTTGTCCTTATTTTCATCAACTCAGTTCTTTGTATAATCAGCAGCAGCAGCAGCAGGGAAAAATAATTGATCCTCAATTAACCAAACATCCAACCTCCAATTCAAATGGTCATATTGTAGATGATCCACCTCAAGCTCAGTCTTCTGATTCTCCAATGGGGTAG
Protein sequence

>Msa0187640

MLDERGKHFEFEQLRSTTSLLGSSSSSVANINSTFHHIPLIPSTSSSNSHSPHHQFPLQTQTNLFHPSILSLPHHSPNTTTFNSNSINFQTQTPPPLIIDSSWTNDELLLLFKITSTIHNFFPDQLITWDHVSSKLAEFGIKKSAQNCKEKFEHENTSFMKIHNNHNDNNFPRFVSDLQDLYQGGGVSVDNKQPNPDENKNTQHEEDDSRDDRVETKHCDDDDKVMMEKSKNKKRKRRLDRFEMLKSFCETVVNKIIAQQEEIHNKLLEDMLKRDQEKLAREEAWKKQEIERMNMMVQQQQAIASDRQANIIEFLNKYLATGYSSSSSQLHSQNPNNPCNNLKSKTPFSNVIADQNPSSSDTEYSNSTSTLVVPTIMEKLEDRRRWPRDEVLALINLKSTTSVTNRSNNNVEGNSNKGPLWERISEGMFELGYKRSAKRCKEKWENINKYFKKTKDIVVNKKKRSTDSRTCPYFHQLSSLYNQQQQQQGKIIDPQLTKHPTSNSNGHIVDDPPQAQSSDSPMG*