AlfalfaGEDB | Msa0187640

M. sativa cultivar zhongmu-4 / Msa0187640

KEGG: -
GO: GO:0000976 GO:0001067 GO:0001158 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0035326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF13837.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0187640	XP_003626419.1	85.455	495	36	9	1	487	17	483	0.0	763

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0187640	sp\|Q8H181\|GTL2_ARATH	40.842	475	168	16	103	483	103	558	6.69e-74	249

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0187640	G7L1T9	85.455	495	36	9	1	487	17	483	0.0	763

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0187640	TF	Trihelix

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0187640	Msa1129260	0.968008	4.539905e-128	-8.615850e-47
Msa0187640	Msa1444990	0.996106	1.811165e-223	-8.615850e-47
Msa0187640	Msa1459230	0.883625	3.830362e-71	-8.615850e-47

Showing 1 to 3 of 3 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0187640	MtrunA17_Chr7g0273941	85.455	495	36	9	1	487	17	483	0.0	763
Msa0187640	MtrunA17_Chr1g0190851	45.850	506	203	18	32	492	34	513	3.22e-110	338
Msa0187640	MtrunA17_Chr2g0290511	31.250	256	137	9	245	481	114	349	1.41e-30	122
Msa0187640	MtrunA17_Chr6g0463941	55.238	105	38	2	385	489	464	559	1.04e-28	120
Msa0187640	MtrunA17_Chr6g0463941	41.837	98	47	2	385	482	55	142	5.78e-16	80.9
Msa0187640	MtrunA17_Chr1g0201941	43.750	96	44	2	385	480	57	142	9.72e-17	83.6
Msa0187640	MtrunA17_Chr1g0201941	35.227	88	48	2	233	317	274	355	8.87e-11	64.7
Msa0187640	MtrunA17_Chr1g0201911	42.424	99	47	2	385	483	55	143	1.15e-15	79.7
Msa0187640	MtrunA17_Chr7g0265831	39.000	100	50	3	385	483	115	204	6.21e-14	73.9
Msa0187640	MtrunA17_Chr7g0265831	24.542	273	160	8	86	317	96	363	9.81e-11	63.9

Showing 1 to 10 of 12 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0187640	AT5G28300.1	40.842	475	168	16	103	483	103	558	6.80e-75	249
Msa0187640	AT1G76890.2	37.363	273	135	9	220	484	243	487	5.80e-40	153
Msa0187640	AT1G76890.2	36.111	144	76	4	385	522	41	174	5.25e-16	81.3
Msa0187640	AT1G33240.2	34.444	270	132	8	244	481	227	483	1.14e-30	126
Msa0187640	AT1G33240.3	34.444	270	132	8	244	481	266	522	1.20e-30	126
Msa0187640	AT1G33240.3	42.708	96	45	2	385	480	62	147	4.68e-17	84.7
Msa0187640	AT1G76880.1	54.000	100	37	2	385	484	408	498	5.92e-27	115
Msa0187640	AT1G76880.1	41.071	112	52	3	376	483	48	149	9.39e-17	84.0
Msa0187640	AT1G33240.1	56.701	97	33	3	385	481	435	522	9.00e-26	112
Msa0187640	AT1G33240.1	42.708	96	45	2	385	480	62	147	3.99e-17	85.1

Showing 1 to 10 of 15 entries

Previous1 2Next

Find 124 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTATTTATGGCTTATT+AGG	0.131965	2_1:-2343574	Msa0187640:five_prime_UTR
AAGTTCGTCGTTAGTCCAGC+TGG	0.453547	2_1:+2343069	None:intergenic
AATATGACCATTTGAATTGG+AGG	0.468145	2_1:+2341789	None:intergenic
AATTAAGGGTATGTGGTGGA+AGG	0.587264	2_1:+2343270	None:intergenic
AATTAGAGGATAGGAGAAGG+TGG	0.625991	2_1:-2342155	Msa0187640:CDS
ACACTGTGATGATGACGACA+AGG	0.746516	2_1:-2342640	Msa0187640:CDS
ACGGTGGTGGAGTTTGGGTC+TGG	0.489580	2_1:+2343104	None:intergenic
ACTCTGTGTCACTTGAGCTA+GGG	0.543713	2_1:+2342223	None:intergenic
AGAAAAGGTCAACGGATTCA+AGG	0.478087	2_1:-2341906	Msa0187640:CDS
AGAAATTAGAGGATAGGAGA+AGG	0.501494	2_1:-2342158	Msa0187640:CDS

Showing 1 to 10 of 124 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CTTCTAAACAAAGCTAAAAG+AGG	-	chr2_1:2341465-2341484	Msa0187640:three_prime_UTR	30.0%
GATCTTCAAGATCTTTATCA+AGG	-	chr2_1:2342222-2342241	Msa0187640:CDS	30.0%
GGAAAAAACAAGAGATTGAA+AGG	-	chr2_1:2342547-2342566	Msa0187640:CDS	30.0%
GTTCAAGAATTCAATGATGT+TGG	+	chr2_1:2342622-2342641	None:intergenic	30.0%
TCTGCTATCACATTAGAAAA+AGG	+	chr2_1:2342735-2342754	None:intergenic	30.0%
TAATGGAGAAATTAGAGGAT+AGG	-	chr2_1:2342820-2342839	Msa0187640:CDS	30.0%
AGAAGCAACAATAATGTTGA+AGG	-	chr2_1:2342909-2342928	Msa0187640:intron	30.0%
ATAGTAATAAAGGACCTTTG+TGG	-	chr2_1:2342934-2342953	Msa0187640:intron	30.0%
TAGTAATAAAGGACCTTTGT+GGG	-	chr2_1:2342935-2342954	Msa0187640:intron	30.0%
GAATAAGAAGAAAAGGTCAA+CGG	-	chr2_1:2343070-2343089	Msa0187640:CDS	30.0%

Showing 1 to 10 of 309 entries

Previous1 2 3 4 5…31Next

Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	2341354	2343652	2341354	ID=Msa0187640;Name=Msa0187640
chr2_1	mRNA	2341354	2343652	2341354	ID=Msa0187640-mRNA-1;Parent=Msa0187640;Name=Msa0187640-mRNA-1;_AED=0.01;_eAED=0.01;_QI=260\|1\|1\|1\|1\|1\|2\|387\|523
chr2_1	exon	2341354	2342911	2341354	ID=Msa0187640-mRNA-1:exon:1103;Parent=Msa0187640-mRNA-1
chr2_1	exon	2342992	2343652	2342992	ID=Msa0187640-mRNA-1:exon:1102;Parent=Msa0187640-mRNA-1
chr2_1	five_prime_UTR	2343393	2343652	2343393	ID=Msa0187640-mRNA-1:five_prime_utr;Parent=Msa0187640-mRNA-1
chr2_1	CDS	2342992	2343392	2342992	ID=Msa0187640-mRNA-1:cds;Parent=Msa0187640-mRNA-1
chr2_1	CDS	2341741	2342911	2341741	ID=Msa0187640-mRNA-1:cds;Parent=Msa0187640-mRNA-1
chr2_1	three_prime_UTR	2341354	2341740	2341354	ID=Msa0187640-mRNA-1:three_prime_utr;Parent=Msa0187640-mRNA-1

Gene Sequence

>Msa0187640

ATGTTGGATGAAAGAGGAAAGCATTTTGAATTTGAGCAATTGAGGAGTACTACTAGTCTTCTTGGTTCGTCTTCTTCTTCTGTTGCAAACATCAACAGCACCTTCCACCACATACCCTTAATTCCCTCTACTTCTTCTTCCAATTCTCATTCTCCTCATCATCAATTTCCACTTCAAACTCAAACAAACCTCTTCCACCCATCAATACTATCATTGCCCCACCACTCTCCTAACACCACTACCTTTAATTCTAATTCAATCAACTTCCAGACCCAAACTCCACCACCGTTGATCATCGATTCCAGCTGGACTAACGACGAACTTCTTCTACTCTTCAAGATCACATCTACCATTCACAATTTCTTCCCAGATCAACTCATCACATGGGACCATGTCTCAAGTAAGCTAGCTGAGTTTGGGATCAAGAAGAGTGCTCAAAATTGTAAGGAGAAGTTTGAACATGAGAACACATCATTTATGAAGATTCATAACAATCATAATGATAATAATTTCCCCCGGTTTGTTAGTGATCTTCAAGATCTTTATCAAGGTGGTGGTGTTAGTGTTGATAATAAACAACCAAACCCTGACGAAAACAAAAATACCCAACACGAAGAAGATGATTCGAGAGATGATAGAGTAGAGACCAAACACTGTGATGATGACGACAAGGTGATGATGGAGAAATCAAAGAACAAAAAGAGGAAGAGGCGCCTTGATAGATTTGAAATGTTGAAGAGTTTTTGTGAGACAGTGGTTAACAAAATAATTGCACAACAAGAAGAAATACACAATAAGCTACTTGAAGACATGCTCAAAAGAGATCAAGAAAAGCTTGCTAGAGAGGAAGCATGGAAAAAACAAGAGATTGAAAGGATGAACATGATGGTACAACAACAACAAGCTATTGCAAGTGATAGACAAGCCAACATCATTGAATTCTTGAACAAATATCTAGCCACAGGATATTCTTCTTCTTCTTCACAATTGCACTCACAAAACCCTAATAATCCTTGTAACAATCTTAAATCAAAAACACCTTTTTCTAATGTGATAGCAGATCAAAACCCTAGCTCAAGTGACACAGAGTACTCAAATTCCACTTCTACCCTTGTTGTGCCTACAATAATGGAGAAATTAGAGGATAGGAGAAGGTGGCCAAGAGATGAAGTGTTGGCACTCATAAACCTCAAGTCTACTACAAGTGTTACAAACAGAAGCAACAATAATGTTGAAGGAAATAGTAATAAAGGACCTTTGTGGGAGAGAATCTCTGAAGGGATGTTTGAGTTGGGATACAAGAGAAGTGCAAAGAGGTGTAAAGAAAAATGGGAAAACATAAATAAGTATTTTAAAAAGACAAAGGATATTGTTGTGAATAAGAAGAAAAGGTCAACGGATTCAAGGACTTGTCCTTATTTTCATCAACTCAGTTCTTTGTATAATCAGCAGCAGCAGCAGCAGGGAAAAATAATTGATCCTCAATTAACCAAACATCCAACCTCCAATTCAAATGGTCATATTGTAGATGATCCACCTCAAGCTCAGTCTTCTGATTCTCCAATGGGGTAG

Protein sequence

>Msa0187640

MLDERGKHFEFEQLRSTTSLLGSSSSSVANINSTFHHIPLIPSTSSSNSHSPHHQFPLQTQTNLFHPSILSLPHHSPNTTTFNSNSINFQTQTPPPLIIDSSWTNDELLLLFKITSTIHNFFPDQLITWDHVSSKLAEFGIKKSAQNCKEKFEHENTSFMKIHNNHNDNNFPRFVSDLQDLYQGGGVSVDNKQPNPDENKNTQHEEDDSRDDRVETKHCDDDDKVMMEKSKNKKRKRRLDRFEMLKSFCETVVNKIIAQQEEIHNKLLEDMLKRDQEKLAREEAWKKQEIERMNMMVQQQQAIASDRQANIIEFLNKYLATGYSSSSSQLHSQNPNNPCNNLKSKTPFSNVIADQNPSSSDTEYSNSTSTLVVPTIMEKLEDRRRWPRDEVLALINLKSTTSVTNRSNNNVEGNSNKGPLWERISEGMFELGYKRSAKRCKEKWENINKYFKKTKDIVVNKKKRSTDSRTCPYFHQLSSLYNQQQQQQGKIIDPQLTKHPTSNSNGHIVDDPPQAQSSDSPMG*