AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1444990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1444990 MtrunA17_Chr7g0273941 85.455 495 36 9 1 487 17 483 0.0 763
Msa1444990 MtrunA17_Chr1g0190851 45.850 506 203 18 32 492 34 513 3.22e-110 338
Msa1444990 MtrunA17_Chr2g0290511 31.250 256 137 9 245 481 114 349 1.41e-30 122
Msa1444990 MtrunA17_Chr6g0463941 55.238 105 38 2 385 489 464 559 1.04e-28 120
Msa1444990 MtrunA17_Chr6g0463941 41.837 98 47 2 385 482 55 142 5.78e-16 80.9
Msa1444990 MtrunA17_Chr1g0201941 43.750 96 44 2 385 480 57 142 9.72e-17 83.6
Msa1444990 MtrunA17_Chr1g0201941 35.227 88 48 2 233 317 274 355 8.87e-11 64.7
Msa1444990 MtrunA17_Chr1g0201911 42.424 99 47 2 385 483 55 143 1.15e-15 79.7
Msa1444990 MtrunA17_Chr7g0265831 39.000 100 50 3 385 483 115 204 6.21e-14 73.9
Msa1444990 MtrunA17_Chr7g0265831 24.542 273 160 8 86 317 96 363 9.81e-11 63.9
Msa1444990 MtrunA17_Chr1g0198171 42.268 97 45 3 385 480 114 200 1.03e-13 73.6
Msa1444990 MtrunA17_Chr1g0179191 38.462 104 53 3 385 487 131 224 4.44e-13 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1444990 AT5G28300.1 40.842 475 168 16 103 483 103 558 6.80e-75 249
Msa1444990 AT1G76890.2 37.363 273 135 9 220 484 243 487 5.80e-40 153
Msa1444990 AT1G76890.2 36.111 144 76 4 385 522 41 174 5.25e-16 81.3
Msa1444990 AT1G33240.2 34.444 270 132 8 244 481 227 483 1.14e-30 126
Msa1444990 AT1G33240.3 34.444 270 132 8 244 481 266 522 1.20e-30 126
Msa1444990 AT1G33240.3 42.708 96 45 2 385 480 62 147 4.68e-17 84.7
Msa1444990 AT1G76880.1 54.000 100 37 2 385 484 408 498 5.92e-27 115
Msa1444990 AT1G76880.1 41.071 112 52 3 376 483 48 149 9.39e-17 84.0
Msa1444990 AT1G33240.1 56.701 97 33 3 385 481 435 522 9.00e-26 112
Msa1444990 AT1G33240.1 42.708 96 45 2 385 480 62 147 3.99e-17 85.1
Msa1444990 AT5G47660.1 30.672 238 137 7 245 481 178 388 2.55e-25 108
Msa1444990 AT3G10000.1 40.000 100 50 3 385 483 88 178 1.64e-14 76.3
Msa1444990 AT5G03680.1 38.384 99 50 3 385 482 119 207 2.13e-13 73.2
Msa1444990 AT5G03680.1 26.800 250 149 11 234 475 284 507 9.51e-12 68.2
Msa1444990 AT3G10000.2 36.364 99 45 3 385 483 88 168 5.74e-12 68.6

Find 124 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATTATTTATGGCTTATT+AGG 0.131965 tig0030876:-15304 Msa1444990:five_prime_UTR
AGATTGTTACAAGGATTATT+AGG 0.181963 tig0030876:+14018 None:intergenic
AGAAGAAGTAGAGGGAATTA+AGG 0.209713 tig0030876:+14985 None:intergenic
TTAGATCACGTTGAAAATTA+TGG 0.221677 tig0030876:-13132 Msa1444990:three_prime_UTR
CTTTGTACATTTGCGATATC+TGG 0.223312 tig0030876:-13182 Msa1444990:three_prime_UTR
GTTGATTGAATTAGAATTAA+AGG 0.228543 tig0030876:+14859 None:intergenic
TGATCAACGGTGGTGGAGTT+TGG 0.283034 tig0030876:+14828 None:intergenic
TCTAATTTCTCCATTATTGT+AGG 0.283920 tig0030876:+13901 None:intergenic
CCTTGTTGTGCCTACAATAA+TGG 0.294174 tig0030876:-13911 Msa1444990:CDS
GAACTGAGTTGATGAAAATA+AGG 0.325543 tig0030876:+13607 None:intergenic
TACAATATGACCATTTGAAT+TGG 0.335962 tig0030876:+13516 None:intergenic
GTTGAAGGAAATAGTAATAA+AGG 0.341852 tig0030876:-13790 Msa1444990:CDS
ATGCGTCATAGAGATCAATT+TGG 0.343924 tig0030876:-15374 None:intergenic
GATTGTTACAAGGATTATTA+GGG 0.345761 tig0030876:+14019 None:intergenic
TCTGCTATCACATTAGAAAA+AGG 0.348185 tig0030876:+13982 None:intergenic
GAATTAAAGGTAGTGGTGTT+AGG 0.362917 tig0030876:+14872 None:intergenic
TGCAGTAAGCTAGCTGAGTT+TGG 0.364718 tig0030876:-14624 Msa1444990:intron
AGGAGTACTACTAGTCTTCT+TGG 0.365345 tig0030876:-15058 Msa1444990:CDS
CGAATCATCTTCTTCGTGTT+GGG 0.376149 tig0030876:+14416 None:intergenic
CTTGGTGACTGATGGGAGGA+TGG 0.379091 tig0030876:-13243 Msa1444990:three_prime_UTR
GTTGGATGTTTGGTTAATTG+AGG 0.388574 tig0030876:+13541 None:intergenic
TGAATTGGAGGTTGGATGTT+TGG 0.388613 tig0030876:+13531 None:intergenic
GATCAACGGTGGTGGAGTTT+GGG 0.391573 tig0030876:+14829 None:intergenic
CTTCTAAACAAAGCTAAAAG+AGG 0.407587 tig0030876:-15249 Msa1444990:five_prime_UTR
TACAATAATGGAGAAATTAG+AGG 0.413562 tig0030876:-13899 Msa1444990:CDS
GAAGAAGTAGAGGGAATTAA+GGG 0.418831 tig0030876:+14986 None:intergenic
CAGTCTTCTGATTCTCCAAT+GGG 0.423197 tig0030876:-13475 Msa1444990:CDS
GTCGTCATCATCACAGTGTT+TGG 0.428860 tig0030876:+14374 None:intergenic
TGGGGCAATGATAGTATTGA+TGG 0.430799 tig0030876:+14902 None:intergenic
TCGAATCATCTTCTTCGTGT+TGG 0.432686 tig0030876:+14415 None:intergenic
TTGGTGACTGATGGGAGGAT+GGG 0.436472 tig0030876:-13242 Msa1444990:three_prime_UTR
TCCCATGTGATGAGTTGATC+TGG 0.439124 tig0030876:+14734 None:intergenic
CTCTGAAGGGATGTTTGAGT+TGG 0.442279 tig0030876:-13749 Msa1444990:CDS
TCAACATTTCAAATCTATCA+AGG 0.442340 tig0030876:+14307 None:intergenic
CTTGAAGATCACTAACAAAC+CGG 0.444929 tig0030876:+14505 None:intergenic
GTTCAAGAATTCAATGATGT+TGG 0.446172 tig0030876:+14095 None:intergenic
TGGTGACTGATGGGAGGATG+GGG 0.447305 tig0030876:-13241 Msa1444990:three_prime_UTR
AAGTTCGTCGTTAGTCCAGC+TGG 0.453547 tig0030876:+14799 None:intergenic
ATGATGAGGAGAATGAGAAT+TGG 0.461876 tig0030876:+14961 None:intergenic
AGAAGCAACAATAATGTTGA+AGG 0.463341 tig0030876:-13805 Msa1444990:CDS
TACTCTGTGTCACTTGAGCT+AGG 0.463574 tig0030876:+13952 None:intergenic
AATATGACCATTTGAATTGG+AGG 0.468145 tig0030876:+13519 None:intergenic
AGAAAAGGTCAACGGATTCA+AGG 0.478087 tig0030876:-13636 Msa1444990:CDS
GATCTTCAAGATCTTTATCA+AGG 0.479140 tig0030876:-14492 Msa1444990:CDS
TGAATTAGAATTAAAGGTAG+TGG 0.482460 tig0030876:+14865 None:intergenic
ATTATTTATGGCTTATTAGG+AGG 0.485768 tig0030876:-15301 Msa1444990:five_prime_UTR
GAAGAGTGCTCAAAATTGTA+AGG 0.485968 tig0030876:-14595 Msa1444990:CDS
ACGGTGGTGGAGTTTGGGTC+TGG 0.489580 tig0030876:+14834 None:intergenic
CATCCAACCTCCAATTCAAA+TGG 0.490841 tig0030876:-13526 Msa1444990:CDS
TAGTAATAAAGGACCTTTGT+GGG 0.496078 tig0030876:-13779 Msa1444990:CDS
AGAATTGGAAGAAGAAGTAG+AGG 0.498292 tig0030876:+14976 None:intergenic
TCAAGAAAAGCTTGCTAGAG+AGG 0.499159 tig0030876:-14196 Msa1444990:CDS
TAATGGAGAAATTAGAGGAT+AGG 0.500977 tig0030876:-13894 Msa1444990:CDS
AGTGCCAACACTTCATCTCT+TGG 0.501001 tig0030876:+13862 None:intergenic
AGAAATTAGAGGATAGGAGA+AGG 0.501494 tig0030876:-13888 Msa1444990:CDS
TCTGAAGGGATGTTTGAGTT+GGG 0.503163 tig0030876:-13748 Msa1444990:CDS
AGTGGTGTTAGGAGAGTGGT+GGG 0.504430 tig0030876:+14883 None:intergenic
CACGGACAGAATGATAGTTA+AGG 0.507146 tig0030876:+13094 None:intergenic
TGACCATTTGAATTGGAGGT+TGG 0.512037 tig0030876:+13523 None:intergenic
TCAGTCTTCTGATTCTCCAA+TGG 0.512323 tig0030876:-13476 Msa1444990:CDS
CTAAAAGAGGAGAGTGTTGT+GGG 0.514492 tig0030876:-15236 Msa1444990:five_prime_UTR
TTGTTGTGAATAAGAAGAAA+AGG 0.514743 tig0030876:-13651 Msa1444990:CDS
TAGAGGGAATTAAGGGTATG+TGG 0.520931 tig0030876:+14993 None:intergenic
ATAGTATTGATGGGTGGAAG+AGG 0.526228 tig0030876:+14912 None:intergenic
GAATCGATGATCAACGGTGG+TGG 0.526899 tig0030876:+14821 None:intergenic
CGTTGATCATCGATTCCAGC+TGG 0.533603 tig0030876:-14814 Msa1444990:CDS
GCAGTAAGCTAGCTGAGTTT+GGG 0.534684 tig0030876:-14623 Msa1444990:intron
CAAGATCTTTATCAAGGTGG+TGG 0.535018 tig0030876:-14486 Msa1444990:CDS
GCAAACATGTTGGATGAAAG+AGG 0.537737 tig0030876:-15106 Msa1444990:exon
ATAAGCAGATGGTGAATTCA+CGG 0.538169 tig0030876:+13076 None:intergenic
CCATTATTGTAGGCACAACA+AGG 0.538540 tig0030876:+13911 None:intergenic
TCGCAAATGTACAAAGAAGT+AGG 0.540633 tig0030876:+13189 None:intergenic
ACTCTGTGTCACTTGAGCTA+GGG 0.543713 tig0030876:+13953 None:intergenic
AGGTTTGTTTGAGTTTGAAG+TGG 0.545574 tig0030876:+14932 None:intergenic
TGATGACGACAAGGTGATGA+TGG 0.550605 tig0030876:-14361 Msa1444990:CDS
AGGTAGTGGTGTTAGGAGAG+TGG 0.552440 tig0030876:+14879 None:intergenic
TCGTATTTATACTACCCCAT+TGG 0.554200 tig0030876:+13460 None:intergenic
TAGTGGTGTTAGGAGAGTGG+TGG 0.563193 tig0030876:+14882 None:intergenic
AGCTTGCTAGAGAGGAAGCA+TGG 0.569276 tig0030876:-14188 Msa1444990:CDS
TGCATGTAGAGTAGTAGAGC+TGG 0.574850 tig0030876:-15166 Msa1444990:five_prime_UTR
TTGTGGGAGAGAATCTCTGA+AGG 0.575460 tig0030876:-13763 Msa1444990:CDS
ATAGTAATAAAGGACCTTTG+TGG 0.578204 tig0030876:-13780 Msa1444990:CDS
TCCCAGATCAACTCATCACA+TGG 0.578469 tig0030876:-14736 Msa1444990:CDS
CATGCAATCAGTGAATTAGC+CGG 0.579088 tig0030876:-13413 Msa1444990:three_prime_UTR
TAACACTTGTAGTAGACTTG+AGG 0.580589 tig0030876:+13833 None:intergenic
GAATCAGAAGACTGAGCTTG+AGG 0.581830 tig0030876:+13484 None:intergenic
TTGAACAAATATCTAGCCAC+AGG 0.583846 tig0030876:-14078 Msa1444990:CDS
AGGCACAACAAGGGTAGAAG+TGG 0.586674 tig0030876:+13921 None:intergenic
ATCTGGGAAGAAATTGTGAA+TGG 0.587163 tig0030876:+14751 None:intergenic
AATTAAGGGTATGTGGTGGA+AGG 0.587264 tig0030876:+15000 None:intergenic
CCCATGTGATGAGTTGATCT+GGG 0.588059 tig0030876:+14735 None:intergenic
AGAGGTGGTAGCAAACATGT+TGG 0.589579 tig0030876:-15116 Msa1444990:exon
TTTGATTTAAGATTGTTACA+AGG 0.590503 tig0030876:+14009 None:intergenic
GCTAAAAGAGGAGAGTGTTG+TGG 0.597554 tig0030876:-15237 Msa1444990:five_prime_UTR
GACAAACGAGAGAGAAAGAG+AGG 0.599365 tig0030876:-15202 Msa1444990:five_prime_UTR
TTGAAGATCACTAACAAACC+GGG 0.601696 tig0030876:+14506 None:intergenic
TCAGAAGACTGAGCTTGAGG+TGG 0.606482 tig0030876:+13487 None:intergenic
GTGGCCAAGAGATGAAGTGT+TGG 0.612713 tig0030876:-13866 Msa1444990:CDS
TGAAGTGGAAATTGATGATG+AGG 0.617387 tig0030876:+14947 None:intergenic
CTTCAAGATCTTTATCAAGG+TGG 0.622674 tig0030876:-14489 Msa1444990:CDS
TCACATGGGACCATGTCTCA+AGG 0.623811 tig0030876:-14721 Msa1444990:intron
GATTGAAAGGATGAACATGA+TGG 0.625916 tig0030876:-14154 Msa1444990:CDS
AATTAGAGGATAGGAGAAGG+TGG 0.625991 tig0030876:-13885 Msa1444990:CDS
AGGGAATTAAGGGTATGTGG+TGG 0.633033 tig0030876:+14996 None:intergenic
TAATTACGTACCTTGAGACA+TGG 0.636193 tig0030876:+14711 None:intergenic
TTTGCTTGGTGACTGATGGG+AGG 0.636516 tig0030876:-13247 Msa1444990:three_prime_UTR
ATAATGATAATAATTTCCCC+CGG 0.637802 tig0030876:-14524 Msa1444990:CDS
CAGCTGGAATCGATGATCAA+CGG 0.638993 tig0030876:+14815 None:intergenic
GAATAAGAAGAAAAGGTCAA+CGG 0.648790 tig0030876:-13644 Msa1444990:CDS
TCAGAGATTCTCTCCCACAA+AGG 0.658578 tig0030876:+13766 None:intergenic
TGAAGATCACTAACAAACCG+GGG 0.660207 tig0030876:+14507 None:intergenic
GGGGCAATGATAGTATTGAT+GGG 0.665761 tig0030876:+14903 None:intergenic
TGTGGGAGAGAATCTCTGAA+GGG 0.668713 tig0030876:-13762 Msa1444990:CDS
CCCAGATCAACTCATCACAT+GGG 0.681423 tig0030876:-14735 Msa1444990:CDS
CATTATTGTAGGCACAACAA+GGG 0.683728 tig0030876:+13912 None:intergenic
GAATTGGAAGAAGAAGTAGA+GGG 0.683768 tig0030876:+14977 None:intergenic
GCAATGATAGTATTGATGGG+TGG 0.685120 tig0030876:+14906 None:intergenic
GATACAAGAGAAGTGCAAAG+AGG 0.707168 tig0030876:-13726 Msa1444990:CDS
AGTCTTCTGATTCTCCAATG+GGG 0.718372 tig0030876:-13474 Msa1444990:CDS
GAAGATCACTAACAAACCGG+GGG 0.720209 tig0030876:+14508 None:intergenic
GTGGTGTTAGGAGAGTGGTG+GGG 0.721834 tig0030876:+14884 None:intergenic
CTGGAATCGATGATCAACGG+TGG 0.722514 tig0030876:+14818 None:intergenic
AGAAGAAGAAGAATATCCTG+TGG 0.722719 tig0030876:+14062 None:intergenic
ACACTGTGATGATGACGACA+AGG 0.746516 tig0030876:-14370 Msa1444990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTATTTATGGCTTATT+AGG - tig0030876:13142-13161 Msa1444990:three_prime_UTR 15.0%
!!! TAAGTATTTTAAAAAGACAA+AGG - tig0030876:14769-14788 Msa1444990:CDS 15.0%
!! AAAATTATTTATGGCTTATT+AGG - tig0030876:13142-13161 Msa1444990:three_prime_UTR 15.0%
!!! TAAGTATTTTAAAAAGACAA+AGG - tig0030876:14769-14788 Msa1444990:CDS 15.0%
!! CGTCACAAAAAAATTATTTA+TGG - tig0030876:13133-13152 Msa1444990:three_prime_UTR 20.0%
!! GTTGATTGAATTAGAATTAA+AGG + tig0030876:13590-13609 None:intergenic 20.0%
!! ATAAATGTTTCATTGATCTT+TGG - tig0030876:13771-13790 Msa1444990:CDS 20.0%
!!! TTTGATTTAAGATTGTTACA+AGG + tig0030876:14440-14459 None:intergenic 20.0%
!!! TCAAAAATATATTTTCTCAC+CGG + tig0030876:15055-15074 None:intergenic 20.0%
!! AGTCCAAAAAATTATTAAAG+GGG + tig0030876:15083-15102 None:intergenic 20.0%
!! GAGTCCAAAAAATTATTAAA+GGG + tig0030876:15084-15103 None:intergenic 20.0%
!! AGAGTCCAAAAAATTATTAA+AGG + tig0030876:15085-15104 None:intergenic 20.0%
!!! TTTTGATGGAAGAAAAAAAT+GGG + tig0030876:15137-15156 None:intergenic 20.0%
!!! ATTTTGATGGAAGAAAAAAA+TGG + tig0030876:15138-15157 None:intergenic 20.0%
!!! AGTTGAACTAATTATTTTGA+TGG + tig0030876:15151-15170 None:intergenic 20.0%
!!! TTTCTTTTAATTGTTTTGCT+TGG - tig0030876:15185-15204 Msa1444990:five_prime_UTR 20.0%
!! CGTCACAAAAAAATTATTTA+TGG - tig0030876:13133-13152 Msa1444990:three_prime_UTR 20.0%
!! GTTGATTGAATTAGAATTAA+AGG + tig0030876:13590-13609 None:intergenic 20.0%
!! ATAAATGTTTCATTGATCTT+TGG - tig0030876:13771-13790 Msa1444990:CDS 20.0%
!!! TTTGATTTAAGATTGTTACA+AGG + tig0030876:14440-14459 None:intergenic 20.0%
!!! TCAAAAATATATTTTCTCAC+CGG + tig0030876:15055-15074 None:intergenic 20.0%
!! AGTCCAAAAAATTATTAAAG+GGG + tig0030876:15083-15102 None:intergenic 20.0%
!! GAGTCCAAAAAATTATTAAA+GGG + tig0030876:15084-15103 None:intergenic 20.0%
!! AGAGTCCAAAAAATTATTAA+AGG + tig0030876:15085-15104 None:intergenic 20.0%
!!! TTTTGATGGAAGAAAAAAAT+GGG + tig0030876:15137-15156 None:intergenic 20.0%
!!! ATTTTGATGGAAGAAAAAAA+TGG + tig0030876:15138-15157 None:intergenic 20.0%
!!! AGTTGAACTAATTATTTTGA+TGG + tig0030876:15151-15170 None:intergenic 20.0%
!!! TTTCTTTTAATTGTTTTGCT+TGG - tig0030876:15185-15204 Msa1444990:five_prime_UTR 20.0%
! ATTATTTATGGCTTATTAGG+AGG - tig0030876:13145-13164 Msa1444990:three_prime_UTR 25.0%
!! ATTTTGAATTTGAGCAATTG+AGG - tig0030876:13368-13387 Msa1444990:three_prime_UTR 25.0%
! TGAATTAGAATTAAAGGTAG+TGG + tig0030876:13584-13603 None:intergenic 25.0%
! ATAATGATAATAATTTCCCC+CGG - tig0030876:13922-13941 Msa1444990:CDS 25.0%
! AGAAATCAAAGAACAAAAAG+AGG - tig0030876:14108-14127 Msa1444990:CDS 25.0%
! TCAACATTTCAAATCTATCA+AGG + tig0030876:14142-14161 None:intergenic 25.0%
! GATTGTTACAAGGATTATTA+GGG + tig0030876:14430-14449 None:intergenic 25.0%
! AGATTGTTACAAGGATTATT+AGG + tig0030876:14431-14450 None:intergenic 25.0%
! TCTAATTTCTCCATTATTGT+AGG + tig0030876:14548-14567 None:intergenic 25.0%
!! TACAATAATGGAGAAATTAG+AGG - tig0030876:14547-14566 Msa1444990:CDS 25.0%
! GTTGAAGGAAATAGTAATAA+AGG - tig0030876:14656-14675 Msa1444990:intron 25.0%
!! AAAGAGGTGTAAAGAAAAAT+GGG - tig0030876:14736-14755 Msa1444990:CDS 25.0%
! TTGTTGTGAATAAGAAGAAA+AGG - tig0030876:14795-14814 Msa1444990:CDS 25.0%
! TACAATATGACCATTTGAAT+TGG + tig0030876:14933-14952 None:intergenic 25.0%
!!! TTGCCCCTTTAATAATTTTT+TGG - tig0030876:15077-15096 Msa1444990:CDS 25.0%
!!! AGTTTGAATTCGTTTTTACT+TGG - tig0030876:15111-15130 Msa1444990:exon 25.0%
! TTAGATCACGTTGAAAATTA+TGG - tig0030876:15314-15333 Msa1444990:five_prime_UTR 25.0%
! ATTATTTATGGCTTATTAGG+AGG - tig0030876:13145-13164 Msa1444990:three_prime_UTR 25.0%
!! ATTTTGAATTTGAGCAATTG+AGG - tig0030876:13368-13387 Msa1444990:three_prime_UTR 25.0%
! TGAATTAGAATTAAAGGTAG+TGG + tig0030876:13584-13603 None:intergenic 25.0%
! ATAATGATAATAATTTCCCC+CGG - tig0030876:13922-13941 Msa1444990:CDS 25.0%
! AGAAATCAAAGAACAAAAAG+AGG - tig0030876:14108-14127 Msa1444990:CDS 25.0%
! TCAACATTTCAAATCTATCA+AGG + tig0030876:14142-14161 None:intergenic 25.0%
! GATTGTTACAAGGATTATTA+GGG + tig0030876:14430-14449 None:intergenic 25.0%
! AGATTGTTACAAGGATTATT+AGG + tig0030876:14431-14450 None:intergenic 25.0%
! TCTAATTTCTCCATTATTGT+AGG + tig0030876:14548-14567 None:intergenic 25.0%
!! TACAATAATGGAGAAATTAG+AGG - tig0030876:14547-14566 Msa1444990:CDS 25.0%
! GTTGAAGGAAATAGTAATAA+AGG - tig0030876:14656-14675 Msa1444990:intron 25.0%
!! AAAGAGGTGTAAAGAAAAAT+GGG - tig0030876:14736-14755 Msa1444990:CDS 25.0%
! TTGTTGTGAATAAGAAGAAA+AGG - tig0030876:14795-14814 Msa1444990:CDS 25.0%
! TACAATATGACCATTTGAAT+TGG + tig0030876:14933-14952 None:intergenic 25.0%
!!! TTGCCCCTTTAATAATTTTT+TGG - tig0030876:15077-15096 Msa1444990:CDS 25.0%
!!! AGTTTGAATTCGTTTTTACT+TGG - tig0030876:15111-15130 Msa1444990:exon 25.0%
! TTAGATCACGTTGAAAATTA+TGG - tig0030876:15314-15333 Msa1444990:five_prime_UTR 25.0%
! GATTTTGTGATGTGAAAAGA+GGG - tig0030876:13094-13113 Msa1444990:three_prime_UTR 30.0%
CTTCTAAACAAAGCTAAAAG+AGG - tig0030876:13197-13216 Msa1444990:three_prime_UTR 30.0%
GATCTTCAAGATCTTTATCA+AGG - tig0030876:13954-13973 Msa1444990:CDS 30.0%
GGAAAAAACAAGAGATTGAA+AGG - tig0030876:14279-14298 Msa1444990:CDS 30.0%
GTTCAAGAATTCAATGATGT+TGG + tig0030876:14354-14373 None:intergenic 30.0%
TCTGCTATCACATTAGAAAA+AGG + tig0030876:14467-14486 None:intergenic 30.0%
TAATGGAGAAATTAGAGGAT+AGG - tig0030876:14552-14571 Msa1444990:CDS 30.0%
AGAAGCAACAATAATGTTGA+AGG - tig0030876:14641-14660 Msa1444990:intron 30.0%
ATAGTAATAAAGGACCTTTG+TGG - tig0030876:14666-14685 Msa1444990:intron 30.0%
TAGTAATAAAGGACCTTTGT+GGG - tig0030876:14667-14686 Msa1444990:intron 30.0%
! CAAAGAGGTGTAAAGAAAAA+TGG - tig0030876:14735-14754 Msa1444990:CDS 30.0%
GAATAAGAAGAAAAGGTCAA+CGG - tig0030876:14802-14821 Msa1444990:CDS 30.0%
!! GAACTGAGTTGATGAAAATA+AGG + tig0030876:14842-14861 None:intergenic 30.0%
AATATGACCATTTGAATTGG+AGG + tig0030876:14930-14949 None:intergenic 30.0%
ACATCACAAAATCCAAATTG+AGG + tig0030876:13087-13106 None:intergenic 30.0%
! GATTTTGTGATGTGAAAAGA+GGG - tig0030876:13094-13113 Msa1444990:three_prime_UTR 30.0%
CTTCTAAACAAAGCTAAAAG+AGG - tig0030876:13197-13216 Msa1444990:three_prime_UTR 30.0%
GATCTTCAAGATCTTTATCA+AGG - tig0030876:13954-13973 Msa1444990:CDS 30.0%
GGAAAAAACAAGAGATTGAA+AGG - tig0030876:14279-14298 Msa1444990:CDS 30.0%
GTTCAAGAATTCAATGATGT+TGG + tig0030876:14354-14373 None:intergenic 30.0%
TCTGCTATCACATTAGAAAA+AGG + tig0030876:14467-14486 None:intergenic 30.0%
TAATGGAGAAATTAGAGGAT+AGG - tig0030876:14552-14571 Msa1444990:CDS 30.0%
AGAAGCAACAATAATGTTGA+AGG - tig0030876:14641-14660 Msa1444990:intron 30.0%
ATAGTAATAAAGGACCTTTG+TGG - tig0030876:14666-14685 Msa1444990:intron 30.0%
TAGTAATAAAGGACCTTTGT+GGG - tig0030876:14667-14686 Msa1444990:intron 30.0%
! CAAAGAGGTGTAAAGAAAAA+TGG - tig0030876:14735-14754 Msa1444990:CDS 30.0%
GAATAAGAAGAAAAGGTCAA+CGG - tig0030876:14802-14821 Msa1444990:CDS 30.0%
!! GAACTGAGTTGATGAAAATA+AGG + tig0030876:14842-14861 None:intergenic 30.0%
AATATGACCATTTGAATTGG+AGG + tig0030876:14930-14949 None:intergenic 30.0%
! GGATTTTGTGATGTGAAAAG+AGG - tig0030876:13093-13112 Msa1444990:three_prime_UTR 35.0%
GTAGCTGAGTTTGAAAAAAG+AGG - tig0030876:13312-13331 Msa1444990:three_prime_UTR 35.0%
GAAGAAGTAGAGGGAATTAA+GGG + tig0030876:13463-13482 None:intergenic 35.0%
AGAAGAAGTAGAGGGAATTA+AGG + tig0030876:13464-13483 None:intergenic 35.0%
GAATTGGAAGAAGAAGTAGA+GGG + tig0030876:13472-13491 None:intergenic 35.0%
AGAATTGGAAGAAGAAGTAG+AGG + tig0030876:13473-13492 None:intergenic 35.0%
ATGATGAGGAGAATGAGAAT+TGG + tig0030876:13488-13507 None:intergenic 35.0%
!! TGAAGTGGAAATTGATGATG+AGG + tig0030876:13502-13521 None:intergenic 35.0%
! AGGTTTGTTTGAGTTTGAAG+TGG + tig0030876:13517-13536 None:intergenic 35.0%
! GAATTAAAGGTAGTGGTGTT+AGG + tig0030876:13577-13596 None:intergenic 35.0%
ATCTGGGAAGAAATTGTGAA+TGG + tig0030876:13698-13717 None:intergenic 35.0%
TAATTACGTACCTTGAGACA+TGG + tig0030876:13738-13757 None:intergenic 35.0%
TTACTGCACACATCATCATA+AGG + tig0030876:13810-13829 None:intergenic 35.0%
!! GAAGAGTGCTCAAAATTGTA+AGG - tig0030876:13851-13870 Msa1444990:CDS 35.0%
TTGAAGATCACTAACAAACC+GGG + tig0030876:13943-13962 None:intergenic 35.0%
CTTGAAGATCACTAACAAAC+CGG + tig0030876:13944-13963 None:intergenic 35.0%
CTTCAAGATCTTTATCAAGG+TGG - tig0030876:13957-13976 Msa1444990:CDS 35.0%
!!! TTTTTGTTTTCGTCAGGGTT+TGG + tig0030876:14008-14027 None:intergenic 35.0%
!!! GGGTATTTTTGTTTTCGTCA+GGG + tig0030876:14013-14032 None:intergenic 35.0%
!!! TGGGTATTTTTGTTTTCGTC+AGG + tig0030876:14014-14033 None:intergenic 35.0%
CAAAGAACAAAAAGAGGAAG+AGG - tig0030876:14114-14133 Msa1444990:CDS 35.0%
GATTGAAAGGATGAACATGA+TGG - tig0030876:14292-14311 Msa1444990:CDS 35.0%
TTGAACAAATATCTAGCCAC+AGG - tig0030876:14368-14387 Msa1444990:CDS 35.0%
AGAAGAAGAAGAATATCCTG+TGG + tig0030876:14387-14406 None:intergenic 35.0%
CATTATTGTAGGCACAACAA+GGG + tig0030876:14537-14556 None:intergenic 35.0%
AGAAATTAGAGGATAGGAGA+AGG - tig0030876:14558-14577 Msa1444990:CDS 35.0%
TAACACTTGTAGTAGACTTG+AGG + tig0030876:14616-14635 None:intergenic 35.0%
GTTGGATGTTTGGTTAATTG+AGG + tig0030876:14908-14927 None:intergenic 35.0%
TCGTATTTATACTACCCCAT+TGG + tig0030876:14989-15008 None:intergenic 35.0%
TCGCAAATGTACAAAGAAGT+AGG + tig0030876:15260-15279 None:intergenic 35.0%
CTTTGTACATTTGCGATATC+TGG - tig0030876:15264-15283 Msa1444990:five_prime_UTR 35.0%
! GGATTTTGTGATGTGAAAAG+AGG - tig0030876:13093-13112 Msa1444990:three_prime_UTR 35.0%
GTAGCTGAGTTTGAAAAAAG+AGG - tig0030876:13312-13331 Msa1444990:three_prime_UTR 35.0%
GAAGAAGTAGAGGGAATTAA+GGG + tig0030876:13463-13482 None:intergenic 35.0%
AGAAGAAGTAGAGGGAATTA+AGG + tig0030876:13464-13483 None:intergenic 35.0%
GAATTGGAAGAAGAAGTAGA+GGG + tig0030876:13472-13491 None:intergenic 35.0%
AGAATTGGAAGAAGAAGTAG+AGG + tig0030876:13473-13492 None:intergenic 35.0%
ATGATGAGGAGAATGAGAAT+TGG + tig0030876:13488-13507 None:intergenic 35.0%
!! TGAAGTGGAAATTGATGATG+AGG + tig0030876:13502-13521 None:intergenic 35.0%
! AGGTTTGTTTGAGTTTGAAG+TGG + tig0030876:13517-13536 None:intergenic 35.0%
! GAATTAAAGGTAGTGGTGTT+AGG + tig0030876:13577-13596 None:intergenic 35.0%
ATCTGGGAAGAAATTGTGAA+TGG + tig0030876:13698-13717 None:intergenic 35.0%
TAATTACGTACCTTGAGACA+TGG + tig0030876:13738-13757 None:intergenic 35.0%
TTACTGCACACATCATCATA+AGG + tig0030876:13810-13829 None:intergenic 35.0%
!! GAAGAGTGCTCAAAATTGTA+AGG - tig0030876:13851-13870 Msa1444990:CDS 35.0%
TTGAAGATCACTAACAAACC+GGG + tig0030876:13943-13962 None:intergenic 35.0%
CTTGAAGATCACTAACAAAC+CGG + tig0030876:13944-13963 None:intergenic 35.0%
CTTCAAGATCTTTATCAAGG+TGG - tig0030876:13957-13976 Msa1444990:CDS 35.0%
!!! TTTTTGTTTTCGTCAGGGTT+TGG + tig0030876:14008-14027 None:intergenic 35.0%
!!! GGGTATTTTTGTTTTCGTCA+GGG + tig0030876:14013-14032 None:intergenic 35.0%
!!! TGGGTATTTTTGTTTTCGTC+AGG + tig0030876:14014-14033 None:intergenic 35.0%
CAAAGAACAAAAAGAGGAAG+AGG - tig0030876:14114-14133 Msa1444990:CDS 35.0%
GATTGAAAGGATGAACATGA+TGG - tig0030876:14292-14311 Msa1444990:CDS 35.0%
TTGAACAAATATCTAGCCAC+AGG - tig0030876:14368-14387 Msa1444990:CDS 35.0%
AGAAGAAGAAGAATATCCTG+TGG + tig0030876:14387-14406 None:intergenic 35.0%
CATTATTGTAGGCACAACAA+GGG + tig0030876:14537-14556 None:intergenic 35.0%
AGAAATTAGAGGATAGGAGA+AGG - tig0030876:14558-14577 Msa1444990:CDS 35.0%
ACTTGTAGTAGACTTG+AGG + tig0030876:14616-14635 None:intergenic 35.0%
GTTGGATGTTTGGTTAATTG+AGG + tig0030876:14908-14927 None:intergenic 35.0%
TCGTATTTATACTACCCCAT+TGG + tig0030876:14989-15008 None:intergenic 35.0%
TCGCAAATGTACAAAGAAGT+AGG + tig0030876:15260-15279 None:intergenic 35.0%
CTTTGTACATTTGCGATATC+TGG - tig0030876:15264-15283 Msa1444990:five_prime_UTR 35.0%
!! CTAAAAGAGGAGAGTGTTGT+GGG - tig0030876:13210-13229 Msa1444990:three_prime_UTR 40.0%
GCTGAGTTTGAAAAAAGAGG+TGG - tig0030876:13315-13334 Msa1444990:three_prime_UTR 40.0%
GCAAACATGTTGGATGAAAG+AGG - tig0030876:13340-13359 Msa1444990:three_prime_UTR 40.0%
!! AGGAGTACTACTAGTCTTCT+TGG - tig0030876:13388-13407 Msa1444990:three_prime_UTR 40.0%
! AATTAAGGGTATGTGGTGGA+AGG + tig0030876:13449-13468 None:intergenic 40.0%
! TAGAGGGAATTAAGGGTATG+TGG + tig0030876:13456-13475 None:intergenic 40.0%
!! ATAGTATTGATGGGTGGAAG+AGG + tig0030876:13537-13556 None:intergenic 40.0%
!! GCAATGATAGTATTGATGGG+TGG + tig0030876:13543-13562 None:intergenic 40.0%
!! GGGGCAATGATAGTATTGAT+GGG + tig0030876:13546-13565 None:intergenic 40.0%
! TGGGGCAATGATAGTATTGA+TGG + tig0030876:13547-13566 None:intergenic 40.0%
TGAAGATCACTAACAAACCG+GGG + tig0030876:13942-13961 None:intergenic 40.0%
CAAGATCTTTATCAAGGTGG+TGG - tig0030876:13960-13979 Msa1444990:CDS 40.0%
CGAATCATCTTCTTCGTGTT+GGG + tig0030876:14033-14052 None:intergenic 40.0%
TCGAATCATCTTCTTCGTGT+TGG + tig0030876:14034-14053 None:intergenic 40.0%
! GAAGAGTTTTTGTGAGACAG+TGG - tig0030876:14160-14179 Msa1444990:CDS 40.0%
!! TCAAGAAAAGCTTGCTAGAG+AGG - tig0030876:14250-14269 Msa1444990:CDS 40.0%
CCATTATTGTAGGCACAACA+AGG + tig0030876:14538-14557 None:intergenic 40.0%
! CCTTGTTGTGCCTACAATAA+TGG - tig0030876:14535-14554 Msa1444990:CDS 40.0%
AATTAGAGGATAGGAGAAGG+TGG - tig0030876:14561-14580 Msa1444990:CDS 40.0%
! TCTGAAGGGATGTTTGAGTT+GGG - tig0030876:14698-14717 Msa1444990:intron 40.0%
! GATACAAGAGAAGTGCAAAG+AGG - tig0030876:14720-14739 Msa1444990:intron 40.0%
! AGAAAAGGTCAACGGATTCA+AGG - tig0030876:14810-14829 Msa1444990:CDS 40.0%
TGAATTGGAGGTTGGATGTT+TGG + tig0030876:14918-14937 None:intergenic 40.0%
CATCCAACCTCCAATTCAAA+TGG - tig0030876:14920-14939 Msa1444990:CDS 40.0%
TGACCATTTGAATTGGAGGT+TGG + tig0030876:14926-14945 None:intergenic 40.0%
TCAGTCTTCTGATTCTCCAA+TGG - tig0030876:14970-14989 Msa1444990:CDS 40.0%
CAGTCTTCTGATTCTCCAAT+GGG - tig0030876:14971-14990 Msa1444990:CDS 40.0%
AGTCTTCTGATTCTCCAATG+GGG - tig0030876:14972-14991 Msa1444990:CDS 40.0%
CATGCAATCAGTGAATTAGC+CGG - tig0030876:15033-15052 Msa1444990:CDS 40.0%
!! TTGTTTTGCTTGGTGACTGA+TGG - tig0030876:15195-15214 Msa1444990:five_prime_UTR 40.0%
!! TGTTTTGCTTGGTGACTGAT+GGG - tig0030876:15196-15215 Msa1444990:five_prime_UTR 40.0%
CACGGACAGAATGATAGTTA+AGG + tig0030876:15355-15374 None:intergenic 40.0%
!! CTAAAAGAGGAGAGTGTTGT+GGG - tig0030876:13210-13229 Msa1444990:three_prime_UTR 40.0%
GCTGAGTTTGAAAAAAGAGG+TGG - tig0030876:13315-13334 Msa1444990:three_prime_UTR 40.0%
GCAAACATGTTGGATGAAAG+AGG - tig0030876:13340-13359 Msa1444990:three_prime_UTR 40.0%
!! AGGAGTACTACTAGTCTTCT+TGG - tig0030876:13388-13407 Msa1444990:three_prime_UTR 40.0%
! AATTAAGGGTATGTGGTGGA+AGG + tig0030876:13449-13468 None:intergenic 40.0%
! TAGAGGGAATTAAGGGTATG+TGG + tig0030876:13456-13475 None:intergenic 40.0%
!! ATAGTATTGATGGGTGGAAG+AGG + tig0030876:13537-13556 None:intergenic 40.0%
!! GCAATGATAGTATTGATGGG+TGG + tig0030876:13543-13562 None:intergenic 40.0%
!! GGGGCAATGATAGTATTGAT+GGG + tig0030876:13546-13565 None:intergenic 40.0%
! TGGGGCAATGATAGTATTGA+TGG + tig0030876:13547-13566 None:intergenic 40.0%
TGAAGATCACTAACAAACCG+GGG + tig0030876:13942-13961 None:intergenic 40.0%
CAAGATCTTTATCAAGGTGG+TGG - tig0030876:13960-13979 Msa1444990:CDS 40.0%
CGAATCATCTTCTTCGTGTT+GGG + tig0030876:14033-14052 None:intergenic 40.0%
TCGAATCATCTTCTTCGTGT+TGG + tig0030876:14034-14053 None:intergenic 40.0%
! GAAGAGTTTTTGTGAGACAG+TGG - tig0030876:14160-14179 Msa1444990:CDS 40.0%
!! TCAAGAAAAGCTTGCTAGAG+AGG - tig0030876:14250-14269 Msa1444990:CDS 40.0%
CCATTATTGTAGGCACAACA+AGG + tig0030876:14538-14557 None:intergenic 40.0%
! CCTTGTTGTGCCTACAATAA+TGG - tig0030876:14535-14554 Msa1444990:CDS 40.0%
AATTAGAGGATAGGAGAAGG+TGG - tig0030876:14561-14580 Msa1444990:CDS 40.0%
! TCTGAAGGGATGTTTGAGTT+GGG - tig0030876:14698-14717 Msa1444990:intron 40.0%
! GATACAAGAGAAGTGCAAAG+AGG - tig0030876:14720-14739 Msa1444990:intron 40.0%
! AGAAAAGGTCAACGGATTCA+AGG - tig0030876:14810-14829 Msa1444990:CDS 40.0%
TGAATTGGAGGTTGGATGTT+TGG + tig0030876:14918-14937 None:intergenic 40.0%
CATCCAACCTCCAATTCAAA+TGG - tig0030876:14920-14939 Msa1444990:CDS 40.0%
TGACCATTTGAATTGGAGGT+TGG + tig0030876:14926-14945 None:intergenic 40.0%
TCAGTCTTCTGATTCTCCAA+TGG - tig0030876:14970-14989 Msa1444990:CDS 40.0%
CAGTCTTCTGATTCTCCAAT+GGG - tig0030876:14971-14990 Msa1444990:CDS 40.0%
AGTCTTCTGATTCTCCAATG+GGG - tig0030876:14972-14991 Msa1444990:CDS 40.0%
CATGCAATCAGTGAATTAGC+CGG - tig0030876:15033-15052 Msa1444990:CDS 40.0%
!! TTGTTTTGCTTGGTGACTGA+TGG - tig0030876:15195-15214 Msa1444990:five_prime_UTR 40.0%
!! TGTTTTGCTTGGTGACTGAT+GGG - tig0030876:15196-15215 Msa1444990:five_prime_UTR 40.0%
CACGGACAGAATGATAGTTA+AGG + tig0030876:15355-15374 None:intergenic 40.0%
!! GCTAAAAGAGGAGAGTGTTG+TGG - tig0030876:13209-13228 Msa1444990:three_prime_UTR 45.0%
GACAAACGAGAGAGAAAGAG+AGG - tig0030876:13244-13263 Msa1444990:three_prime_UTR 45.0%
TGCATGTAGAGTAGTAGAGC+TGG - tig0030876:13280-13299 Msa1444990:three_prime_UTR 45.0%
AGAGGTGGTAGCAAACATGT+TGG - tig0030876:13330-13349 Msa1444990:three_prime_UTR 45.0%
! AGGGAATTAAGGGTATGTGG+TGG + tig0030876:13453-13472 None:intergenic 45.0%
CAGCTGGAATCGATGATCAA+CGG + tig0030876:13634-13653 None:intergenic 45.0%
TCCCAGATCAACTCATCACA+TGG - tig0030876:13710-13729 Msa1444990:CDS 45.0%
!! CCCATGTGATGAGTTGATCT+GGG + tig0030876:13714-13733 None:intergenic 45.0%
CCCAGATCAACTCATCACAT+GGG - tig0030876:13711-13730 Msa1444990:CDS 45.0%
!! TCCCATGTGATGAGTTGATC+TGG + tig0030876:13715-13734 None:intergenic 45.0%
TGCAGTAAGCTAGCTGAGTT+TGG - tig0030876:13822-13841 Msa1444990:CDS 45.0%
GCAGTAAGCTAGCTGAGTTT+GGG - tig0030876:13823-13842 Msa1444990:CDS 45.0%
GAAGATCACTAACAAACCGG+GGG + tig0030876:13941-13960 None:intergenic 45.0%
GTCGTCATCATCACAGTGTT+TGG + tig0030876:14075-14094 None:intergenic 45.0%
! ACACTGTGATGATGACGACA+AGG - tig0030876:14076-14095 Msa1444990:CDS 45.0%
! TGATGACGACAAGGTGATGA+TGG - tig0030876:14085-14104 Msa1444990:CDS 45.0%
!! ACTCTGTGTCACTTGAGCTA+GGG + tig0030876:14496-14515 None:intergenic 45.0%
!! TACTCTGTGTCACTTGAGCT+AGG + tig0030876:14497-14516 None:intergenic 45.0%
AGTGCCAACACTTCATCTCT+TGG + tig0030876:14587-14606 None:intergenic 45.0%
TCAGAGATTCTCTCCCACAA+AGG + tig0030876:14683-14702 None:intergenic 45.0%
TTGTGGGAGAGAATCTCTGA+AGG - tig0030876:14683-14702 Msa1444990:intron 45.0%
TGTGGGAGAGAATCTCTGAA+GGG - tig0030876:14684-14703 Msa1444990:intron 45.0%
! CTCTGAAGGGATGTTTGAGT+TGG - tig0030876:14697-14716 Msa1444990:intron 45.0%
GAATCAGAAGACTGAGCTTG+AGG + tig0030876:14965-14984 None:intergenic 45.0%
!! GCTAAAAGAGGAGAGTGTTG+TGG - tig0030876:13209-13228 Msa1444990:three_prime_UTR 45.0%
GACAAACGAGAGAGAAAGAG+AGG - tig0030876:13244-13263 Msa1444990:three_prime_UTR 45.0%
TGCATGTAGAGTAGTAGAGC+TGG - tig0030876:13280-13299 Msa1444990:three_prime_UTR 45.0%
AGAGGTGGTAGCAAACATGT+TGG - tig0030876:13330-13349 Msa1444990:three_prime_UTR 45.0%
! AGGGAATTAAGGGTATGTGG+TGG + tig0030876:13453-13472 None:intergenic 45.0%
CAGCTGGAATCGATGATCAA+CGG + tig0030876:13634-13653 None:intergenic 45.0%
TCCCAGATCAACTCATCACA+TGG - tig0030876:13710-13729 Msa1444990:CDS 45.0%
!! CCCATGTGATGAGTTGATCT+GGG + tig0030876:13714-13733 None:intergenic 45.0%
CCCAGATCAACTCATCACAT+GGG - tig0030876:13711-13730 Msa1444990:CDS 45.0%
!! TCCCATGTGATGAGTTGATC+TGG + tig0030876:13715-13734 None:intergenic 45.0%
TGCAGTAAGCTAGCTGAGTT+TGG - tig0030876:13822-13841 Msa1444990:CDS 45.0%
GCAGTAAGCTAGCTGAGTTT+GGG - tig0030876:13823-13842 Msa1444990:CDS 45.0%
GAAGATCACTAACAAACCGG+GGG + tig0030876:13941-13960 None:intergenic 45.0%
GTCGTCATCATCACAGTGTT+TGG + tig0030876:14075-14094 None:intergenic 45.0%
! ACACTGTGATGATGACGACA+AGG - tig0030876:14076-14095 Msa1444990:CDS 45.0%
! TGATGACGACAAGGTGATGA+TGG - tig0030876:14085-14104 Msa1444990:CDS 45.0%
!! ACTCTGTGTCACTTGAGCTA+GGG + tig0030876:14496-14515 None:intergenic 45.0%
!! TACTCTGTGTCACTTGAGCT+AGG + tig0030876:14497-14516 None:intergenic 45.0%
AGTGCCAACACTTCATCTCT+TGG + tig0030876:14587-14606 None:intergenic 45.0%
TCAGAGATTCTCTCCCACAA+AGG + tig0030876:14683-14702 None:intergenic 45.0%
TTGTGGGAGAGAATCTCTGA+AGG - tig0030876:14683-14702 Msa1444990:intron 45.0%
TGTGGGAGAGAATCTCTGAA+GGG - tig0030876:14684-14703 Msa1444990:intron 45.0%
! CTCTGAAGGGATGTTTGAGT+TGG - tig0030876:14697-14716 Msa1444990:intron 45.0%
GAATCAGAAGACTGAGCTTG+AGG + tig0030876:14965-14984 None:intergenic 45.0%
! AGTGGTGTTAGGAGAGTGGT+GGG + tig0030876:13566-13585 None:intergenic 50.0%
! TAGTGGTGTTAGGAGAGTGG+TGG + tig0030876:13567-13586 None:intergenic 50.0%
! AGGTAGTGGTGTTAGGAGAG+TGG + tig0030876:13570-13589 None:intergenic 50.0%
!! GATCAACGGTGGTGGAGTTT+GGG + tig0030876:13620-13639 None:intergenic 50.0%
!! TGATCAACGGTGGTGGAGTT+TGG + tig0030876:13621-13640 None:intergenic 50.0%
GAATCGATGATCAACGGTGG+TGG + tig0030876:13628-13647 None:intergenic 50.0%
CTGGAATCGATGATCAACGG+TGG + tig0030876:13631-13650 None:intergenic 50.0%
!! CGTTGATCATCGATTCCAGC+TGG - tig0030876:13632-13651 Msa1444990:CDS 50.0%
AAGTTCGTCGTTAGTCCAGC+TGG + tig0030876:13650-13669 None:intergenic 50.0%
TCACATGGGACCATGTCTCA+AGG - tig0030876:13725-13744 Msa1444990:CDS 50.0%
!! AGCTTGCTAGAGAGGAAGCA+TGG - tig0030876:14258-14277 Msa1444990:CDS 50.0%
AGGCACAACAAGGGTAGAAG+TGG + tig0030876:14528-14547 None:intergenic 50.0%
GTGGCCAAGAGATGAAGTGT+TGG - tig0030876:14580-14599 Msa1444990:CDS 50.0%
TCAGAAGACTGAGCTTGAGG+TGG + tig0030876:14962-14981 None:intergenic 50.0%
! TTTGCTTGGTGACTGATGGG+AGG - tig0030876:15199-15218 Msa1444990:five_prime_UTR 50.0%
! TTGGTGACTGATGGGAGGAT+GGG - tig0030876:15204-15223 Msa1444990:five_prime_UTR 50.0%
! AGTGGTGTTAGGAGAGTGGT+GGG + tig0030876:13566-13585 None:intergenic 50.0%
! TAGTGGTGTTAGGAGAGTGG+TGG + tig0030876:13567-13586 None:intergenic 50.0%
! AGGTAGTGGTGTTAGGAGAG+TGG + tig0030876:13570-13589 None:intergenic 50.0%
!! GATCAACGGTGGTGGAGTTT+GGG + tig0030876:13620-13639 None:intergenic 50.0%
!! TGATCAACGGTGGTGGAGTT+TGG + tig0030876:13621-13640 None:intergenic 50.0%
GAATCGATGATCAACGGTGG+TGG + tig0030876:13628-13647 None:intergenic 50.0%
CTGGAATCGATGATCAACGG+TGG + tig0030876:13631-13650 None:intergenic 50.0%
!! CGTTGATCATCGATTCCAGC+TGG - tig0030876:13632-13651 Msa1444990:CDS 50.0%
AAGTTCGTCGTTAGTCCAGC+TGG + tig0030876:13650-13669 None:intergenic 50.0%
TCACATGGGACCATGTCTCA+AGG - tig0030876:13725-13744 Msa1444990:CDS 50.0%
!! AGCTTGCTAGAGAGGAAGCA+TGG - tig0030876:14258-14277 Msa1444990:CDS 50.0%
AGGCACAACAAGGGTAGAAG+TGG + tig0030876:14528-14547 None:intergenic 50.0%
GTGGCCAAGAGATGAAGTGT+TGG - tig0030876:14580-14599 Msa1444990:CDS 50.0%
TCAGAAGACTGAGCTTGAGG+TGG + tig0030876:14962-14981 None:intergenic 50.0%
! TTTGCTTGGTGACTGATGGG+AGG - tig0030876:15199-15218 Msa1444990:five_prime_UTR 50.0%
! TTGGTGACTGATGGGAGGAT+GGG - tig0030876:15204-15223 Msa1444990:five_prime_UTR 50.0%
! GTGGTGTTAGGAGAGTGGTG+GGG + tig0030876:13565-13584 None:intergenic 55.0%
TAATCAGCAGCAGCAGCAGC+AGG - tig0030876:14868-14887 Msa1444990:CDS 55.0%
AATCAGCAGCAGCAGCAGCA+GGG - tig0030876:14869-14888 Msa1444990:CDS 55.0%
! CTTGGTGACTGATGGGAGGA+TGG - tig0030876:15203-15222 Msa1444990:five_prime_UTR 55.0%
TGGTGACTGATGGGAGGATG+GGG - tig0030876:15205-15224 Msa1444990:five_prime_UTR 55.0%
! GTGGTGTTAGGAGAGTGGTG+GGG + tig0030876:13565-13584 None:intergenic 55.0%
TAATCAGCAGCAGCAGCAGC+AGG - tig0030876:14868-14887 Msa1444990:CDS 55.0%
AATCAGCAGCAGCAGCAGCA+GGG - tig0030876:14869-14888 Msa1444990:CDS 55.0%
! CTTGGTGACTGATGGGAGGA+TGG - tig0030876:15203-15222 Msa1444990:five_prime_UTR 55.0%
TGGTGACTGATGGGAGGATG+GGG - tig0030876:15205-15224 Msa1444990:five_prime_UTR 55.0%
!! ACGGTGGTGGAGTTTGGGTC+TGG + tig0030876:13615-13634 None:intergenic 60.0%
!! ACGGTGGTGGAGTTTGGGTC+TGG + tig0030876:13615-13634 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0030876 gene 13086 15382 13086 ID=Msa1444990;Name=Msa1444990
tig0030876 mRNA 13086 15382 13086 ID=Msa1444990-mRNA-1;Parent=Msa1444990;Name=Msa1444990-mRNA-1;_AED=0.01;_eAED=0.01;_QI=260|1|1|1|1|1|2|385|523
tig0030876 exon 13086 14641 13086 ID=Msa1444990-mRNA-1:exon:14744;Parent=Msa1444990-mRNA-1
tig0030876 exon 14722 15382 14722 ID=Msa1444990-mRNA-1:exon:14743;Parent=Msa1444990-mRNA-1
tig0030876 five_prime_UTR 15123 15382 15123 ID=Msa1444990-mRNA-1:five_prime_utr;Parent=Msa1444990-mRNA-1
tig0030876 CDS 14722 15122 14722 ID=Msa1444990-mRNA-1:cds;Parent=Msa1444990-mRNA-1
tig0030876 CDS 13471 14641 13471 ID=Msa1444990-mRNA-1:cds;Parent=Msa1444990-mRNA-1
tig0030876 three_prime_UTR 13086 13470 13086 ID=Msa1444990-mRNA-1:three_prime_utr;Parent=Msa1444990-mRNA-1
Gene Sequence

>Msa1444990

ATGTTGGATGAAAGAGGAAAGCATTTTGAATTTGAGCAATTGAGGAGTACTACTAGTCTTCTTGGTTCGTCTTCTTCTTCTGTTGCAAACATCAACAGCACCTTCCACCACATACCCTTAATTCCCTCTACTTCTTCTTCCAATTCTCATTCTCCTCATCATCAATTTCCACTTCAAACTCAAACAAACCTCTTCCACCCATCAATACTATCATTGCCCCACCACTCTCCTAACACCACTACCTTTAATTCTAATTCAATCAACTTCCAGACCCAAACTCCACCACCGTTGATCATCGATTCCAGCTGGACTAACGACGAACTTCTTCTACTCTTCAAGATCACATCTACCATTCACAATTTCTTCCCAGATCAACTCATCACATGGGACCATGTCTCAAGTAAGCTAGCTGAGTTTGGGATCAAGAAGAGTGCTCAAAATTGTAAGGAGAAGTTTGAACATGAGAACACATCATTTATGAAGATTCATAACAATCATAATGATAATAATTTCCCCCGGTTTGTTAGTGATCTTCAAGATCTTTATCAAGGTGGTGGTGTTAGTGTTGATAATAAACAACCAAACCCTGACGAAAACAAAAATACCCAACACGAAGAAGATGATTCGAGAGATGATAGAGTAGAGACCAAACACTGTGATGATGACGACAAGGTGATGATGGAGAAATCAAAGAACAAAAAGAGGAAGAGGCGCCTTGATAGATTTGAAATGTTGAAGAGTTTTTGTGAGACAGTGGTTAACAAAATAATTGCACAACAAGAAGAAATACACAATAAGCTACTTGAAGACATGCTCAAAAGAGATCAAGAAAAGCTTGCTAGAGAGGAAGCATGGAAAAAACAAGAGATTGAAAGGATGAACATGATGGTACAACAACAACAAGCTATTGCAAGTGATAGACAAGCCAACATCATTGAATTCTTGAACAAATATCTAGCCACAGGATATTCTTCTTCTTCTTCACAATTGCACTCACAAAACCCTAATAATCCTTGTAACAATCTTAAATCAAAAACACCTTTTTCTAATGTGATAGCAGATCAAAACCCTAGCTCAAGTGACACAGAGTACTCAAATTCCACTTCTACCCTTGTTGTGCCTACAATAATGGAGAAATTAGAGGATAGGAGAAGGTGGCCAAGAGATGAAGTGTTGGCACTCATAAACCTCAAGTCTACTACAAGTGTTACAAACAGAAGCAACAATAATGTTGAAGGAAATAGTAATAAAGGACCTTTGTGGGAGAGAATCTCTGAAGGGATGTTTGAGTTGGGATACAAGAGAAGTGCAAAGAGGTGTAAAGAAAAATGGGAAAACATAAATAAGTATTTTAAAAAGACAAAGGATATTGTTGTGAATAAGAAGAAAAGGTCAACGGATTCAAGGACTTGTCCTTATTTTCATCAACTCAGTTCTTTGTATAATCAGCAGCAGCAGCAGCAGGGAAAAATAATTGATCCTCAATTAACCAAACATCCAACCTCCAATTCAAATGGTCATATTGTAGATGATCCACCTCAAGCTCAGTCTTCTGATTCTCCAATGGGGTAG
Protein sequence

>Msa1444990

MLDERGKHFEFEQLRSTTSLLGSSSSSVANINSTFHHIPLIPSTSSSNSHSPHHQFPLQTQTNLFHPSILSLPHHSPNTTTFNSNSINFQTQTPPPLIIDSSWTNDELLLLFKITSTIHNFFPDQLITWDHVSSKLAEFGIKKSAQNCKEKFEHENTSFMKIHNNHNDNNFPRFVSDLQDLYQGGGVSVDNKQPNPDENKNTQHEEDDSRDDRVETKHCDDDDKVMMEKSKNKKRKRRLDRFEMLKSFCETVVNKIIAQQEEIHNKLLEDMLKRDQEKLAREEAWKKQEIERMNMMVQQQQAIASDRQANIIEFLNKYLATGYSSSSSQLHSQNPNNPCNNLKSKTPFSNVIADQNPSSSDTEYSNSTSTLVVPTIMEKLEDRRRWPRDEVLALINLKSTTSVTNRSNNNVEGNSNKGPLWERISEGMFELGYKRSAKRCKEKWENINKYFKKTKDIVVNKKKRSTDSRTCPYFHQLSSLYNQQQQQQGKIIDPQLTKHPTSNSNGHIVDDPPQAQSSDSPMG*