AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1459230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1459230 MtrunA17_Chr7g0273941 86.061 495 33 9 1 487 17 483 0.0 768
Msa1459230 MtrunA17_Chr1g0190851 45.652 506 204 18 32 492 34 513 6.64e-111 340
Msa1459230 MtrunA17_Chr1g0201911 32.353 272 134 7 233 488 229 466 3.42e-33 133
Msa1459230 MtrunA17_Chr1g0201911 42.424 99 47 2 385 483 55 143 2.27e-15 79.0
Msa1459230 MtrunA17_Chr2g0290511 32.941 255 134 9 245 481 114 349 4.56e-31 124
Msa1459230 MtrunA17_Chr1g0201941 58.000 100 33 2 385 484 454 544 7.04e-29 120
Msa1459230 MtrunA17_Chr1g0201941 44.792 96 43 2 385 480 57 142 1.97e-16 82.4
Msa1459230 MtrunA17_Chr6g0463941 55.238 105 38 2 385 489 464 559 1.61e-28 119
Msa1459230 MtrunA17_Chr6g0463941 41.837 98 47 2 385 482 55 142 1.13e-15 80.1
Msa1459230 MtrunA17_Chr7g0265831 40.000 100 49 3 385 483 115 204 5.63e-14 74.3
Msa1459230 MtrunA17_Chr1g0198171 41.000 100 48 3 385 483 114 203 1.04e-13 73.6
Msa1459230 MtrunA17_Chr1g0179191 38.462 104 53 3 385 487 131 224 3.53e-13 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1459230 AT5G28300.1 40.998 461 187 14 103 483 103 558 1.59e-74 248
Msa1459230 AT1G76890.2 38.909 275 128 10 220 484 243 487 1.16e-41 157
Msa1459230 AT1G76890.2 36.111 144 76 4 385 522 41 174 9.31e-16 80.5
Msa1459230 AT1G76880.1 35.039 254 136 6 248 484 257 498 6.28e-37 144
Msa1459230 AT1G76880.1 41.071 112 52 3 376 483 48 149 2.02e-16 82.8
Msa1459230 AT1G33240.3 34.444 270 132 8 244 481 266 522 9.84e-31 126
Msa1459230 AT1G33240.3 42.708 96 45 2 385 480 62 147 4.40e-17 84.7
Msa1459230 AT1G33240.2 34.444 270 132 8 244 481 227 483 1.07e-30 126
Msa1459230 AT1G33240.1 34.444 270 132 8 244 481 266 522 1.40e-30 126
Msa1459230 AT1G33240.1 42.708 96 45 2 385 480 62 147 4.02e-17 85.1
Msa1459230 AT5G47660.1 31.452 248 140 7 236 481 169 388 4.70e-27 113
Msa1459230 AT3G10000.1 40.000 100 50 3 385 483 88 178 1.65e-14 76.3
Msa1459230 AT5G03680.1 39.394 99 49 3 385 482 119 207 2.35e-13 73.2
Msa1459230 AT5G03680.1 25.600 250 151 9 235 475 284 507 1.41e-12 70.5
Msa1459230 AT3G10000.2 36.364 99 45 3 385 483 88 168 5.49e-12 68.6

Find 124 sgRNAs with CRISPR-Local

Find 305 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATTATTTATGGCTTATT+AGG 0.131965 tig0040144:-13453 Msa1459230:five_prime_UTR
AGATTGTTAGAAGGATTATT+AGG 0.208477 tig0040144:+12168 None:intergenic
AGAAGAAGTAGAGGGAATTA+AGG 0.209713 tig0040144:+13134 None:intergenic
TTAGATCACGTTGAAAATTA+TGG 0.221677 tig0040144:-11281 Msa1459230:three_prime_UTR
CTTTGTACATTTGCGATATC+TGG 0.223312 tig0040144:-11331 Msa1459230:three_prime_UTR
GTTGATTGAATTAGAATTAA+AGG 0.228543 tig0040144:+13008 None:intergenic
TGATCAACGGTGGTGGAGTT+TGG 0.283034 tig0040144:+12977 None:intergenic
TCTAATTTCTCCATTATTGT+AGG 0.283920 tig0040144:+12051 None:intergenic
CCTTGTTGTGCCTACAATAA+TGG 0.294174 tig0040144:-12061 Msa1459230:CDS
TGTTGAAGGAAATAGTAATA+AGG 0.308788 tig0040144:-11941 Msa1459230:CDS
AGAAAAGGTCAATGGATTCT+AGG 0.325174 tig0040144:-11786 Msa1459230:CDS
GAACTGAGTTGATGAAAATA+AGG 0.325543 tig0040144:+11757 None:intergenic
TACAATATGACCATTTGAAT+TGG 0.335962 tig0040144:+11666 None:intergenic
ATGCGTCATAGAGATCAATT+TGG 0.343924 tig0040144:-13523 None:intergenic
TCTGCTATCACATTAGAAAA+AGG 0.348185 tig0040144:+12132 None:intergenic
GAATTAAAGGTAGTGGTGTT+AGG 0.362917 tig0040144:+13021 None:intergenic
TGCAGTAAGCTAGCTGAGTT+TGG 0.364718 tig0040144:-12774 Msa1459230:intron
AGGAGTACTACTAGTCTTCT+TGG 0.365345 tig0040144:-13207 Msa1459230:CDS
GATTGTTAGAAGGATTATTA+GGG 0.370812 tig0040144:+12169 None:intergenic
TTTGATTCTAGATTGTTAGA+AGG 0.376135 tig0040144:+12159 None:intergenic
CGAATCATCTTCTTCGTGTT+GGG 0.376149 tig0040144:+12566 None:intergenic
CTTGGTGACTGATGGGAGGA+TGG 0.379091 tig0040144:-11392 Msa1459230:three_prime_UTR
GTTGGATGTTTGGTTAATTG+AGG 0.388574 tig0040144:+11691 None:intergenic
TGAATTGGAGGTTGGATGTT+TGG 0.388613 tig0040144:+11681 None:intergenic
GATCAACGGTGGTGGAGTTT+GGG 0.391573 tig0040144:+12978 None:intergenic
GTCATCATCATCACAGTGTT+TGG 0.398713 tig0040144:+12524 None:intergenic
GTTGAAGGAAATAGTAATAA+GGG 0.400371 tig0040144:-11940 Msa1459230:CDS
CTTCTAAACAAAGCTAAAAG+AGG 0.407587 tig0040144:-13398 Msa1459230:five_prime_UTR
TACAATAATGGAGAAATTAG+AGG 0.413562 tig0040144:-12049 Msa1459230:CDS
GAAGAAGTAGAGGGAATTAA+GGG 0.418831 tig0040144:+13135 None:intergenic
CAGTCTTCTGATTCTCCAAT+GGG 0.423197 tig0040144:-11625 Msa1459230:CDS
TGGGGCAATGATAGTATTGA+TGG 0.430799 tig0040144:+13051 None:intergenic
TCGAATCATCTTCTTCGTGT+TGG 0.432686 tig0040144:+12565 None:intergenic
TTGGTGACTGATGGGAGGAT+GGG 0.436472 tig0040144:-11391 Msa1459230:three_prime_UTR
TCCCATGTGATGAGTTGATC+TGG 0.439124 tig0040144:+12883 None:intergenic
CTTGAAGATCACTAACAAAC+CGG 0.444929 tig0040144:+12655 None:intergenic
GTTCAAGAATTCAATGATGT+TGG 0.446172 tig0040144:+12245 None:intergenic
TGGTGACTGATGGGAGGATG+GGG 0.447305 tig0040144:-11390 Msa1459230:three_prime_UTR
AAGTTCGTCGTTAGTCCAGC+TGG 0.453547 tig0040144:+12948 None:intergenic
CTCTGAAGGAATGTTTGAGT+TGG 0.461517 tig0040144:-11899 Msa1459230:CDS
ATGATGAGGAGAATGAGAAT+TGG 0.461876 tig0040144:+13110 None:intergenic
AGAAGCAACAATAATGTTGA+AGG 0.463341 tig0040144:-11955 Msa1459230:CDS
TACTCTGTGTCACTTGAGCT+AGG 0.463574 tig0040144:+12102 None:intergenic
TCTGAAGGAATGTTTGAGTT+GGG 0.464616 tig0040144:-11898 Msa1459230:CDS
AATATGACCATTTGAATTGG+AGG 0.468145 tig0040144:+11669 None:intergenic
TAGTAATAAGGGACCTTTGT+GGG 0.477140 tig0040144:-11929 Msa1459230:CDS
GATCTTCAAGATCTTTATCA+AGG 0.479140 tig0040144:-12642 Msa1459230:CDS
TGAATTAGAATTAAAGGTAG+TGG 0.482460 tig0040144:+13014 None:intergenic
ATTATTTATGGCTTATTAGG+AGG 0.485768 tig0040144:-13450 Msa1459230:five_prime_UTR
GAAGAGTGCTCAAAATTGTA+AGG 0.485968 tig0040144:-12745 Msa1459230:CDS
TGATGATGACAAGGTGATGA+TGG 0.486019 tig0040144:-12511 Msa1459230:CDS
ACGGTGGTGGAGTTTGGGTC+TGG 0.489580 tig0040144:+12983 None:intergenic
CATCCAACCTCCAATTCAAA+TGG 0.490841 tig0040144:-11676 Msa1459230:CDS
AGAATTGGAAGAAGAAGTAG+AGG 0.498292 tig0040144:+13125 None:intergenic
TCAAGAAAAGCTTGCTAGAG+AGG 0.499159 tig0040144:-12346 Msa1459230:CDS
TAATGGAGAAATTAGAGGAT+AGG 0.500977 tig0040144:-12044 Msa1459230:CDS
AGTGCCAACACTTCATCTCT+TGG 0.501001 tig0040144:+12012 None:intergenic
AGAAATTAGAGGATAGGAGA+AGG 0.501494 tig0040144:-12038 Msa1459230:CDS
AGTGGTGTTAGGAGAGTGGT+GGG 0.504430 tig0040144:+13032 None:intergenic
CACGGACAGAATGATAGTTA+AGG 0.507146 tig0040144:+11243 None:intergenic
TGACCATTTGAATTGGAGGT+TGG 0.512037 tig0040144:+11673 None:intergenic
TCAGTCTTCTGATTCTCCAA+TGG 0.512323 tig0040144:-11626 Msa1459230:CDS
CTAAAAGAGGAGAGTGTTGT+GGG 0.514492 tig0040144:-13385 Msa1459230:five_prime_UTR
TTGTTGTGAATAAGAAGAAA+AGG 0.514743 tig0040144:-11801 Msa1459230:CDS
TAGAGGGAATTAAGGGTATG+TGG 0.520931 tig0040144:+13142 None:intergenic
ATAGTATTGATGGGTGGAAG+AGG 0.526228 tig0040144:+13061 None:intergenic
GAATCGATGATCAACGGTGG+TGG 0.526899 tig0040144:+12970 None:intergenic
GAATAAGAAGAAAAGGTCAA+TGG 0.531680 tig0040144:-11794 Msa1459230:CDS
CGTTGATCATCGATTCCAGC+TGG 0.533603 tig0040144:-12963 Msa1459230:CDS
GCAGTAAGCTAGCTGAGTTT+GGG 0.534684 tig0040144:-12773 Msa1459230:intron
CAAGATCTTTATCAAGGTGG+TGG 0.535018 tig0040144:-12636 Msa1459230:CDS
GCAAACATGTTGGATGAAAG+AGG 0.537737 tig0040144:-13255 Msa1459230:exon
ATAAGCAGATGGTGAATTCA+CGG 0.538169 tig0040144:+11225 None:intergenic
CCATTATTGTAGGCACAACA+AGG 0.538540 tig0040144:+12061 None:intergenic
TCGCAAATGTACAAAGAAGT+AGG 0.540633 tig0040144:+11338 None:intergenic
ACTCTGTGTCACTTGAGCTA+GGG 0.543713 tig0040144:+12103 None:intergenic
AGGTTTGTTTGAGTTTGAAG+TGG 0.545574 tig0040144:+13081 None:intergenic
AGGTAGTGGTGTTAGGAGAG+TGG 0.552440 tig0040144:+13028 None:intergenic
TCGTATTTATACTACCCCAT+TGG 0.554200 tig0040144:+11610 None:intergenic
TCAACATTTCAAATCTATCA+CGG 0.560758 tig0040144:+12457 None:intergenic
TAGTGGTGTTAGGAGAGTGG+TGG 0.563193 tig0040144:+13031 None:intergenic
AGCTTGCTAGAGAGGAAGCA+TGG 0.569276 tig0040144:-12338 Msa1459230:CDS
TGCATGTAGAGTAGTAGAGC+TGG 0.574850 tig0040144:-13315 Msa1459230:five_prime_UTR
TCCCAGATCAACTCATCACA+TGG 0.578469 tig0040144:-12885 Msa1459230:CDS
CATGCAATCAGTGAATTAGC+CGG 0.579088 tig0040144:-11563 Msa1459230:three_prime_UTR
TAACACTTGTAGTAGACTTG+AGG 0.580589 tig0040144:+11983 None:intergenic
GAATCAGAAGACTGAGCTTG+AGG 0.581830 tig0040144:+11634 None:intergenic
TTGAACAAATATCTAGCCAC+AGG 0.583846 tig0040144:-12228 Msa1459230:CDS
AGGCACAACAAGGGTAGAAG+TGG 0.586674 tig0040144:+12071 None:intergenic
ATCTGGGAAGAAATTGTGAA+TGG 0.587163 tig0040144:+12900 None:intergenic
AATTAAGGGTATGTGGTGGA+AGG 0.587264 tig0040144:+13149 None:intergenic
CCCATGTGATGAGTTGATCT+GGG 0.588059 tig0040144:+12884 None:intergenic
AGAGGTGGTAGCAAACATGT+TGG 0.589579 tig0040144:-13265 Msa1459230:exon
GCTAAAAGAGGAGAGTGTTG+TGG 0.597554 tig0040144:-13386 Msa1459230:five_prime_UTR
GACAAACGAGAGAGAAAGAG+AGG 0.599365 tig0040144:-13351 Msa1459230:five_prime_UTR
TTGAAGATCACTAACAAACC+GGG 0.601696 tig0040144:+12656 None:intergenic
TCAGAAGACTGAGCTTGAGG+TGG 0.606482 tig0040144:+11637 None:intergenic
ATAGTAATAAGGGACCTTTG+TGG 0.612114 tig0040144:-11930 Msa1459230:CDS
GTGGCCAAGAGATGAAGTGT+TGG 0.612713 tig0040144:-12016 Msa1459230:CDS
TGAAGTGGAAATTGATGATG+AGG 0.617387 tig0040144:+13096 None:intergenic
CTTCAAGATCTTTATCAAGG+TGG 0.622674 tig0040144:-12639 Msa1459230:CDS
TCACATGGGACCATGTCTCA+AGG 0.623811 tig0040144:-12870 Msa1459230:intron
GATTGAAAGGATGAACATGA+TGG 0.625916 tig0040144:-12304 Msa1459230:CDS
AATTAGAGGATAGGAGAAGG+TGG 0.625991 tig0040144:-12035 Msa1459230:CDS
TTGTGGGAGAGAATCTCTGA+AGG 0.627055 tig0040144:-11913 Msa1459230:CDS
AGGGAATTAAGGGTATGTGG+TGG 0.633033 tig0040144:+13145 None:intergenic
TTTGCTTGGTGACTGATGGG+AGG 0.636516 tig0040144:-11396 Msa1459230:three_prime_UTR
ATAATGATAATAATTTCCCC+CGG 0.637802 tig0040144:-12674 Msa1459230:CDS
CAGCTGGAATCGATGATCAA+CGG 0.638993 tig0040144:+12964 None:intergenic
TCAGAGATTCTCTCCCACAA+AGG 0.658578 tig0040144:+11916 None:intergenic
TGAAGATCACTAACAAACCG+GGG 0.660207 tig0040144:+12657 None:intergenic
GGGGCAATGATAGTATTGAT+GGG 0.665761 tig0040144:+13052 None:intergenic
GTAATACGTACCTTGAGACA+TGG 0.677539 tig0040144:+12860 None:intergenic
CCCAGATCAACTCATCACAT+GGG 0.681423 tig0040144:-12884 Msa1459230:CDS
CATTATTGTAGGCACAACAA+GGG 0.683728 tig0040144:+12062 None:intergenic
GAATTGGAAGAAGAAGTAGA+GGG 0.683768 tig0040144:+13126 None:intergenic
GCAATGATAGTATTGATGGG+TGG 0.685120 tig0040144:+13055 None:intergenic
GATACAAGAGAAGTGCAAAG+AGG 0.707168 tig0040144:-11876 Msa1459230:CDS
AGTCTTCTGATTCTCCAATG+GGG 0.718372 tig0040144:-11624 Msa1459230:CDS
GAAGATCACTAACAAACCGG+GGG 0.720209 tig0040144:+12658 None:intergenic
GTGGTGTTAGGAGAGTGGTG+GGG 0.721834 tig0040144:+13033 None:intergenic
CTGGAATCGATGATCAACGG+TGG 0.722514 tig0040144:+12967 None:intergenic
AGAAGAAGAAGAATATCCTG+TGG 0.722719 tig0040144:+12212 None:intergenic
ACACTGTGATGATGATGACA+AGG 0.735096 tig0040144:-12520 Msa1459230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTATTTATGGCTTATT+AGG - tig0040144:11291-11310 Msa1459230:three_prime_UTR 15.0%
!! AAAATTATTTATGGCTTATT+AGG - tig0040144:11291-11310 Msa1459230:three_prime_UTR 15.0%
!! CGTCACAAAAAAATTATTTA+TGG - tig0040144:11282-11301 Msa1459230:three_prime_UTR 20.0%
!! GTTGATTGAATTAGAATTAA+AGG + tig0040144:11739-11758 None:intergenic 20.0%
!! ATAAATGTTTCATTGATCTT+TGG - tig0040144:11919-11938 Msa1459230:CDS 20.0%
!!! CAAGTATTTTAAAAAGACAA+AGG - tig0040144:12917-12936 Msa1459230:CDS 20.0%
!!! TCAAAAATATATTTTCTCAC+CGG + tig0040144:13203-13222 None:intergenic 20.0%
!! AGTCCAAAAAATTAATAAAG+GGG + tig0040144:13231-13250 None:intergenic 20.0%
!! GAGTCCAAAAAATTAATAAA+GGG + tig0040144:13232-13251 None:intergenic 20.0%
!! AGAGTCCAAAAAATTAATAA+AGG + tig0040144:13233-13252 None:intergenic 20.0%
!!! TTTTGATGGAAGAAAAAAAT+GGG + tig0040144:13285-13304 None:intergenic 20.0%
!!! ATTTTGATGGAAGAAAAAAA+TGG + tig0040144:13286-13305 None:intergenic 20.0%
!!! AGTTGAACTAATTATTTTGA+TGG + tig0040144:13299-13318 None:intergenic 20.0%
!!! TTTCTTTTAATTGTTTTGCT+TGG - tig0040144:13334-13353 Msa1459230:five_prime_UTR 20.0%
!! CGTCACAAAAAAATTATTTA+TGG - tig0040144:11282-11301 Msa1459230:three_prime_UTR 20.0%
!! GTTGATTGAATTAGAATTAA+AGG + tig0040144:11739-11758 None:intergenic 20.0%
!! ATAAATGTTTCATTGATCTT+TGG - tig0040144:11919-11938 Msa1459230:CDS 20.0%
!!! CAAGTATTTTAAAAAGACAA+AGG - tig0040144:12917-12936 Msa1459230:CDS 20.0%
!!! TCAAAAATATATTTTCTCAC+CGG + tig0040144:13203-13222 None:intergenic 20.0%
!! AGTCCAAAAAATTAATAAAG+GGG + tig0040144:13231-13250 None:intergenic 20.0%
!! GAGTCCAAAAAATTAATAAA+GGG + tig0040144:13232-13251 None:intergenic 20.0%
!! AGAGTCCAAAAAATTAATAA+AGG + tig0040144:13233-13252 None:intergenic 20.0%
!!! TTTTGATGGAAGAAAAAAAT+GGG + tig0040144:13285-13304 None:intergenic 20.0%
!!! ATTTTGATGGAAGAAAAAAA+TGG + tig0040144:13286-13305 None:intergenic 20.0%
!!! AGTTGAACTAATTATTTTGA+TGG + tig0040144:13299-13318 None:intergenic 20.0%
!!! TTTCTTTTAATTGTTTTGCT+TGG - tig0040144:13334-13353 Msa1459230:five_prime_UTR 20.0%
! ATTATTTATGGCTTATTAGG+AGG - tig0040144:11294-11313 Msa1459230:three_prime_UTR 25.0%
!! ATTTTGAATTTGAGCAATTG+AGG - tig0040144:11517-11536 Msa1459230:three_prime_UTR 25.0%
! TGAATTAGAATTAAAGGTAG+TGG + tig0040144:11733-11752 None:intergenic 25.0%
! ATAATGATAATAATTTCCCC+CGG - tig0040144:12070-12089 Msa1459230:CDS 25.0%
! AGAAATCAAAGAACAAAAAG+AGG - tig0040144:12256-12275 Msa1459230:CDS 25.0%
! TCAACATTTCAAATCTATCA+CGG + tig0040144:12290-12309 None:intergenic 25.0%
! GATTGTTAGAAGGATTATTA+GGG + tig0040144:12578-12597 None:intergenic 25.0%
! AGATTGTTAGAAGGATTATT+AGG + tig0040144:12579-12598 None:intergenic 25.0%
! TTTGATTCTAGATTGTTAGA+AGG + tig0040144:12588-12607 None:intergenic 25.0%
! TCTAATTTCTCCATTATTGT+AGG + tig0040144:12696-12715 None:intergenic 25.0%
!! TACAATAATGGAGAAATTAG+AGG - tig0040144:12695-12714 Msa1459230:CDS 25.0%
! TGTTGAAGGAAATAGTAATA+AGG - tig0040144:12803-12822 Msa1459230:intron 25.0%
! GTTGAAGGAAATAGTAATAA+GGG - tig0040144:12804-12823 Msa1459230:intron 25.0%
!! AAAGAGGTGTAAAGAAAAAT+GGG - tig0040144:12884-12903 Msa1459230:CDS 25.0%
! TTGTTGTGAATAAGAAGAAA+AGG - tig0040144:12943-12962 Msa1459230:CDS 25.0%
! TACAATATGACCATTTGAAT+TGG + tig0040144:13081-13100 None:intergenic 25.0%
!!! TTGCCCCTTTATTAATTTTT+TGG - tig0040144:13225-13244 Msa1459230:CDS 25.0%
! TTAGATCACGTTGAAAATTA+TGG - tig0040144:13463-13482 Msa1459230:five_prime_UTR 25.0%
! ATTATTTATGGCTTATTAGG+AGG - tig0040144:11294-11313 Msa1459230:three_prime_UTR 25.0%
!! ATTTTGAATTTGAGCAATTG+AGG - tig0040144:11517-11536 Msa1459230:three_prime_UTR 25.0%
! TGAATTAGAATTAAAGGTAG+TGG + tig0040144:11733-11752 None:intergenic 25.0%
! ATAATGATAATAATTTCCCC+CGG - tig0040144:12070-12089 Msa1459230:CDS 25.0%
! AGAAATCAAAGAACAAAAAG+AGG - tig0040144:12256-12275 Msa1459230:CDS 25.0%
! TCAACATTTCAAATCTATCA+CGG + tig0040144:12290-12309 None:intergenic 25.0%
! GATTGTTAGAAGGATTATTA+GGG + tig0040144:12578-12597 None:intergenic 25.0%
! AGATTGTTAGAAGGATTATT+AGG + tig0040144:12579-12598 None:intergenic 25.0%
! TTTGATTCTAGATTGTTAGA+AGG + tig0040144:12588-12607 None:intergenic 25.0%
! TCTAATTTCTCCATTATTGT+AGG + tig0040144:12696-12715 None:intergenic 25.0%
!! TACAATAATGGAGAAATTAG+AGG - tig0040144:12695-12714 Msa1459230:CDS 25.0%
! TGTTGAAGGAAATAGTAATA+AGG - tig0040144:12803-12822 Msa1459230:intron 25.0%
! GTTGAAGGAAATAGTAATAA+GGG - tig0040144:12804-12823 Msa1459230:intron 25.0%
!! AAAGAGGTGTAAAGAAAAAT+GGG - tig0040144:12884-12903 Msa1459230:CDS 25.0%
! TTGTTGTGAATAAGAAGAAA+AGG - tig0040144:12943-12962 Msa1459230:CDS 25.0%
! TACAATATGACCATTTGAAT+TGG + tig0040144:13081-13100 None:intergenic 25.0%
!!! TTGCCCCTTTATTAATTTTT+TGG - tig0040144:13225-13244 Msa1459230:CDS 25.0%
! TTAGATCACGTTGAAAATTA+TGG - tig0040144:13463-13482 Msa1459230:five_prime_UTR 25.0%
! GATTTTGTGATGTGAAAAGA+GGG - tig0040144:11243-11262 Msa1459230:three_prime_UTR 30.0%
CTTCTAAACAAAGCTAAAAG+AGG - tig0040144:11346-11365 Msa1459230:three_prime_UTR 30.0%
GATCTTCAAGATCTTTATCA+AGG - tig0040144:12102-12121 Msa1459230:CDS 30.0%
!!! TTTTTGTTTTCGTCAGGATT+TGG + tig0040144:12156-12175 None:intergenic 30.0%
GGAAAAAACAAGAGATTGAA+AGG - tig0040144:12427-12446 Msa1459230:CDS 30.0%
GTTCAAGAATTCAATGATGT+TGG + tig0040144:12502-12521 None:intergenic 30.0%
TCTGCTATCACATTAGAAAA+AGG + tig0040144:12615-12634 None:intergenic 30.0%
TAATGGAGAAATTAGAGGAT+AGG - tig0040144:12700-12719 Msa1459230:CDS 30.0%
AGAAGCAACAATAATGTTGA+AGG - tig0040144:12789-12808 Msa1459230:intron 30.0%
! CAAAGAGGTGTAAAGAAAAA+TGG - tig0040144:12883-12902 Msa1459230:CDS 30.0%
GAATAAGAAGAAAAGGTCAA+TGG - tig0040144:12950-12969 Msa1459230:CDS 30.0%
!! GAACTGAGTTGATGAAAATA+AGG + tig0040144:12990-13009 None:intergenic 30.0%
AATATGACCATTTGAATTGG+AGG + tig0040144:13078-13097 None:intergenic 30.0%
ACATCACAAAATCCAAATTG+AGG + tig0040144:11236-11255 None:intergenic 30.0%
! GATTTTGTGATGTGAAAAGA+GGG - tig0040144:11243-11262 Msa1459230:three_prime_UTR 30.0%
CTTCTAAACAAAGCTAAAAG+AGG - tig0040144:11346-11365 Msa1459230:three_prime_UTR 30.0%
GATCTTCAAGATCTTTATCA+AGG - tig0040144:12102-12121 Msa1459230:CDS 30.0%
!!! TTTTTGTTTTCGTCAGGATT+TGG + tig0040144:12156-12175 None:intergenic 30.0%
GGAAAAAACAAGAGATTGAA+AGG - tig0040144:12427-12446 Msa1459230:CDS 30.0%
GTTCAAGAATTCAATGATGT+TGG + tig0040144:12502-12521 None:intergenic 30.0%
TCTGCTATCACATTAGAAAA+AGG + tig0040144:12615-12634 None:intergenic 30.0%
TAATGGAGAAATTAGAGGAT+AGG - tig0040144:12700-12719 Msa1459230:CDS 30.0%
AGAAGCAACAATAATGTTGA+AGG - tig0040144:12789-12808 Msa1459230:intron 30.0%
! CAAAGAGGTGTAAAGAAAAA+TGG - tig0040144:12883-12902 Msa1459230:CDS 30.0%
GAATAAGAAGAAAAGGTCAA+TGG - tig0040144:12950-12969 Msa1459230:CDS 30.0%
!! GAACTGAGTTGATGAAAATA+AGG + tig0040144:12990-13009 None:intergenic 30.0%
AATATGACCATTTGAATTGG+AGG + tig0040144:13078-13097 None:intergenic 30.0%
! GGATTTTGTGATGTGAAAAG+AGG - tig0040144:11242-11261 Msa1459230:three_prime_UTR 35.0%
GTAGCTGAGTTTGAAAAAAG+AGG - tig0040144:11461-11480 Msa1459230:three_prime_UTR 35.0%
GAAGAAGTAGAGGGAATTAA+GGG + tig0040144:11612-11631 None:intergenic 35.0%
AGAAGAAGTAGAGGGAATTA+AGG + tig0040144:11613-11632 None:intergenic 35.0%
GAATTGGAAGAAGAAGTAGA+GGG + tig0040144:11621-11640 None:intergenic 35.0%
AGAATTGGAAGAAGAAGTAG+AGG + tig0040144:11622-11641 None:intergenic 35.0%
ATGATGAGGAGAATGAGAAT+TGG + tig0040144:11637-11656 None:intergenic 35.0%
!! TGAAGTGGAAATTGATGATG+AGG + tig0040144:11651-11670 None:intergenic 35.0%
! AGGTTTGTTTGAGTTTGAAG+TGG + tig0040144:11666-11685 None:intergenic 35.0%
! GAATTAAAGGTAGTGGTGTT+AGG + tig0040144:11726-11745 None:intergenic 35.0%
ATCTGGGAAGAAATTGTGAA+TGG + tig0040144:11847-11866 None:intergenic 35.0%
TTACTGCACACATCATCATA+AGG + tig0040144:11958-11977 None:intergenic 35.0%
!! GAAGAGTGCTCAAAATTGTA+AGG - tig0040144:11999-12018 Msa1459230:CDS 35.0%
TTGAAGATCACTAACAAACC+GGG + tig0040144:12091-12110 None:intergenic 35.0%
CTTGAAGATCACTAACAAAC+CGG + tig0040144:12092-12111 None:intergenic 35.0%
CTTCAAGATCTTTATCAAGG+TGG - tig0040144:12105-12124 Msa1459230:CDS 35.0%
!!! TGGGTATTTTTGTTTTCGTC+AGG + tig0040144:12162-12181 None:intergenic 35.0%
CAAAGAACAAAAAGAGGAAG+AGG - tig0040144:12262-12281 Msa1459230:CDS 35.0%
GATTGAAAGGATGAACATGA+TGG - tig0040144:12440-12459 Msa1459230:CDS 35.0%
TTGAACAAATATCTAGCCAC+AGG - tig0040144:12516-12535 Msa1459230:CDS 35.0%
AGAAGAAGAAGAATATCCTG+TGG + tig0040144:12535-12554 None:intergenic 35.0%
CATTATTGTAGGCACAACAA+GGG + tig0040144:12685-12704 None:intergenic 35.0%
AGAAATTAGAGGATAGGAGA+AGG - tig0040144:12706-12725 Msa1459230:CDS 35.0%
TAACACTTGTAGTAGACTTG+AGG + tig0040144:12764-12783 None:intergenic 35.0%
ATAGTAATAAGGGACCTTTG+TGG - tig0040144:12814-12833 Msa1459230:intron 35.0%
TAGTAATAAGGGACCTTTGT+GGG - tig0040144:12815-12834 Msa1459230:intron 35.0%
! TCTGAAGGAATGTTTGAGTT+GGG - tig0040144:12846-12865 Msa1459230:intron 35.0%
! AGAAAAGGTCAATGGATTCT+AGG - tig0040144:12958-12977 Msa1459230:CDS 35.0%
GTTGGATGTTTGGTTAATTG+AGG + tig0040144:13056-13075 None:intergenic 35.0%
TCGTATTTATACTACCCCAT+TGG + tig0040144:13137-13156 None:intergenic 35.0%
TCGCAAATGTACAAAGAAGT+AGG + tig0040144:13409-13428 None:intergenic 35.0%
CTTTGTACATTTGCGATATC+TGG - tig0040144:13413-13432 Msa1459230:five_prime_UTR 35.0%
! GGATTTTGTGATGTGAAAAG+AGG - tig0040144:11242-11261 Msa1459230:three_prime_UTR 35.0%
GTAGCTGAGTTTGAAAAAAG+AGG - tig0040144:11461-11480 Msa1459230:three_prime_UTR 35.0%
GAAGAAGTAGAGGGAATTAA+GGG + tig0040144:11612-11631 None:intergenic 35.0%
AGAAGAAGTAGAGGGAATTA+AGG + tig0040144:11613-11632 None:intergenic 35.0%
GAATTGGAAGAAGAAGTAGA+GGG + tig0040144:11621-11640 None:intergenic 35.0%
AGAATTGGAAGAAGAAGTAG+AGG + tig0040144:11622-11641 None:intergenic 35.0%
ATGATGAGGAGAATGAGAAT+TGG + tig0040144:11637-11656 None:intergenic 35.0%
!! TGAAGTGGAAATTGATGATG+AGG + tig0040144:11651-11670 None:intergenic 35.0%
! AGGTTTGTTTGAGTTTGAAG+TGG + tig0040144:11666-11685 None:intergenic 35.0%
! GAATTAAAGGTAGTGGTGTT+AGG + tig0040144:11726-11745 None:intergenic 35.0%
ATCTGGGAAGAAATTGTGAA+TGG + tig0040144:11847-11866 None:intergenic 35.0%
TTACTGCACACATCATCATA+AGG + tig0040144:11958-11977 None:intergenic 35.0%
!! GAAGAGTGCTCAAAATTGTA+AGG - tig0040144:11999-12018 Msa1459230:CDS 35.0%
TTGAAGATCACTAACAAACC+GGG + tig0040144:12091-12110 None:intergenic 35.0%
CTTGAAGATCACTAACAAAC+CGG + tig0040144:12092-12111 None:intergenic 35.0%
CTTCAAGATCTTTATCAAGG+TGG - tig0040144:12105-12124 Msa1459230:CDS 35.0%
!!! TGGGTATTTTTGTTTTCGTC+AGG + tig0040144:12162-12181 None:intergenic 35.0%
CAAAGAACAAAAAGAGGAAG+AGG - tig0040144:12262-12281 Msa1459230:CDS 35.0%
GATTGAAAGGATGAACATGA+TGG - tig0040144:12440-12459 Msa1459230:CDS 35.0%
TTGAACAAATATCTAGCCAC+AGG - tig0040144:12516-12535 Msa1459230:CDS 35.0%
AGAAGAAGAAGAATATCCTG+TGG + tig0040144:12535-12554 None:intergenic 35.0%
CATTATTGTAGGCACAACAA+GGG + tig0040144:12685-12704 None:intergenic 35.0%
AGAAATTAGAGGATAGGAGA+AGG - tig0040144:12706-12725 Msa1459230:CDS 35.0%
TAACACTTGTAGTAGACTTG+AGG + tig0040144:12764-12783 None:intergenic 35.0%
ATAGTAATAAGGGACCTTTG+TGG - tig0040144:12814-12833 Msa1459230:intron 35.0%
TAGTAATAAGGGACCTTTGT+GGG - tig0040144:12815-12834 Msa1459230:intron 35.0%
! TCTGAAGGAATGTTTGAGTT+GGG - tig0040144:12846-12865 Msa1459230:intron 35.0%
! AGAAAAGGTCAATGGATTCT+AGG - tig0040144:12958-12977 Msa1459230:CDS 35.0%
GTTGGATGTTTGGTTAATTG+AGG + tig0040144:13056-13075 None:intergenic 35.0%
TCGTATTTATACTACCCCAT+TGG + tig0040144:13137-13156 None:intergenic 35.0%
TCGCAAATGTACAAAGAAGT+AGG + tig0040144:13409-13428 None:intergenic 35.0%
CTTTGTACATTTGCGATATC+TGG - tig0040144:13413-13432 Msa1459230:five_prime_UTR 35.0%
!! CTAAAAGAGGAGAGTGTTGT+GGG - tig0040144:11359-11378 Msa1459230:three_prime_UTR 40.0%
GCTGAGTTTGAAAAAAGAGG+TGG - tig0040144:11464-11483 Msa1459230:three_prime_UTR 40.0%
GCAAACATGTTGGATGAAAG+AGG - tig0040144:11489-11508 Msa1459230:three_prime_UTR 40.0%
!! AGGAGTACTACTAGTCTTCT+TGG - tig0040144:11537-11556 Msa1459230:three_prime_UTR 40.0%
! AATTAAGGGTATGTGGTGGA+AGG + tig0040144:11598-11617 None:intergenic 40.0%
! TAGAGGGAATTAAGGGTATG+TGG + tig0040144:11605-11624 None:intergenic 40.0%
!! ATAGTATTGATGGGTGGAAG+AGG + tig0040144:11686-11705 None:intergenic 40.0%
!! GCAATGATAGTATTGATGGG+TGG + tig0040144:11692-11711 None:intergenic 40.0%
!! GGGGCAATGATAGTATTGAT+GGG + tig0040144:11695-11714 None:intergenic 40.0%
! TGGGGCAATGATAGTATTGA+TGG + tig0040144:11696-11715 None:intergenic 40.0%
GTAATACGTACCTTGAGACA+TGG + tig0040144:11887-11906 None:intergenic 40.0%
TGAAGATCACTAACAAACCG+GGG + tig0040144:12090-12109 None:intergenic 40.0%
CAAGATCTTTATCAAGGTGG+TGG - tig0040144:12108-12127 Msa1459230:CDS 40.0%
CGAATCATCTTCTTCGTGTT+GGG + tig0040144:12181-12200 None:intergenic 40.0%
TCGAATCATCTTCTTCGTGT+TGG + tig0040144:12182-12201 None:intergenic 40.0%
GTCATCATCATCACAGTGTT+TGG + tig0040144:12223-12242 None:intergenic 40.0%
! ACACTGTGATGATGATGACA+AGG - tig0040144:12224-12243 Msa1459230:CDS 40.0%
! TGATGATGACAAGGTGATGA+TGG - tig0040144:12233-12252 Msa1459230:CDS 40.0%
! GAAGAGTTTTTGTGAGACAG+TGG - tig0040144:12308-12327 Msa1459230:CDS 40.0%
!! TCAAGAAAAGCTTGCTAGAG+AGG - tig0040144:12398-12417 Msa1459230:CDS 40.0%
CCATTATTGTAGGCACAACA+AGG + tig0040144:12686-12705 None:intergenic 40.0%
! CCTTGTTGTGCCTACAATAA+TGG - tig0040144:12683-12702 Msa1459230:CDS 40.0%
AATTAGAGGATAGGAGAAGG+TGG - tig0040144:12709-12728 Msa1459230:CDS 40.0%
! CTCTGAAGGAATGTTTGAGT+TGG - tig0040144:12845-12864 Msa1459230:intron 40.0%
! GATACAAGAGAAGTGCAAAG+AGG - tig0040144:12868-12887 Msa1459230:intron 40.0%
TGAATTGGAGGTTGGATGTT+TGG + tig0040144:13066-13085 None:intergenic 40.0%
CATCCAACCTCCAATTCAAA+TGG - tig0040144:13068-13087 Msa1459230:CDS 40.0%
TGACCATTTGAATTGGAGGT+TGG + tig0040144:13074-13093 None:intergenic 40.0%
TCAGTCTTCTGATTCTCCAA+TGG - tig0040144:13118-13137 Msa1459230:CDS 40.0%
CAGTCTTCTGATTCTCCAAT+GGG - tig0040144:13119-13138 Msa1459230:CDS 40.0%
AGTCTTCTGATTCTCCAATG+GGG - tig0040144:13120-13139 Msa1459230:CDS 40.0%
CATGCAATCAGTGAATTAGC+CGG - tig0040144:13181-13200 Msa1459230:CDS 40.0%
!! TTGTTTTGCTTGGTGACTGA+TGG - tig0040144:13344-13363 Msa1459230:five_prime_UTR 40.0%
!! TGTTTTGCTTGGTGACTGAT+GGG - tig0040144:13345-13364 Msa1459230:five_prime_UTR 40.0%
CACGGACAGAATGATAGTTA+AGG + tig0040144:13504-13523 None:intergenic 40.0%
!! CTAAAAGAGGAGAGTGTTGT+GGG - tig0040144:11359-11378 Msa1459230:three_prime_UTR 40.0%
GCTGAGTTTGAAAAAAGAGG+TGG - tig0040144:11464-11483 Msa1459230:three_prime_UTR 40.0%
GCAAACATGTTGGATGAAAG+AGG - tig0040144:11489-11508 Msa1459230:three_prime_UTR 40.0%
!! AGGAGTACTACTAGTCTTCT+TGG - tig0040144:11537-11556 Msa1459230:three_prime_UTR 40.0%
! AATTAAGGGTATGTGGTGGA+AGG + tig0040144:11598-11617 None:intergenic 40.0%
! TAGAGGGAATTAAGGGTATG+TGG + tig0040144:11605-11624 None:intergenic 40.0%
!! ATAGTATTGATGGGTGGAAG+AGG + tig0040144:11686-11705 None:intergenic 40.0%
!! GCAATGATAGTATTGATGGG+TGG + tig0040144:11692-11711 None:intergenic 40.0%
!! GGGGCAATGATAGTATTGAT+GGG + tig0040144:11695-11714 None:intergenic 40.0%
! TGGGGCAATGATAGTATTGA+TGG + tig0040144:11696-11715 None:intergenic 40.0%
GTAATACGTACCTTGAGACA+TGG + tig0040144:11887-11906 None:intergenic 40.0%
TGAAGATCACTAACAAACCG+GGG + tig0040144:12090-12109 None:intergenic 40.0%
CAAGATCTTTATCAAGGTGG+TGG - tig0040144:12108-12127 Msa1459230:CDS 40.0%
CGAATCATCTTCTTCGTGTT+GGG + tig0040144:12181-12200 None:intergenic 40.0%
TCGAATCATCTTCTTCGTGT+TGG + tig0040144:12182-12201 None:intergenic 40.0%
GTCATCATCATCACAGTGTT+TGG + tig0040144:12223-12242 None:intergenic 40.0%
! ACACTGTGATGATGATGACA+AGG - tig0040144:12224-12243 Msa1459230:CDS 40.0%
! TGATGATGACAAGGTGATGA+TGG - tig0040144:12233-12252 Msa1459230:CDS 40.0%
! GAAGAGTTTTTGTGAGACAG+TGG - tig0040144:12308-12327 Msa1459230:CDS 40.0%
!! TCAAGAAAAGCTTGCTAGAG+AGG - tig0040144:12398-12417 Msa1459230:CDS 40.0%
CCATTATTGTAGGCACAACA+AGG + tig0040144:12686-12705 None:intergenic 40.0%
! CCTTGTTGTGCCTACAATAA+TGG - tig0040144:12683-12702 Msa1459230:CDS 40.0%
AATTAGAGGATAGGAGAAGG+TGG - tig0040144:12709-12728 Msa1459230:CDS 40.0%
! CTCTGAAGGAATGTTTGAGT+TGG - tig0040144:12845-12864 Msa1459230:intron 40.0%
! GATACAAGAGAAGTGCAAAG+AGG - tig0040144:12868-12887 Msa1459230:intron 40.0%
TGAATTGGAGGTTGGATGTT+TGG + tig0040144:13066-13085 None:intergenic 40.0%
CATCCAACCTCCAATTCAAA+TGG - tig0040144:13068-13087 Msa1459230:CDS 40.0%
TGACCATTTGAATTGGAGGT+TGG + tig0040144:13074-13093 None:intergenic 40.0%
TCAGTCTTCTGATTCTCCAA+TGG - tig0040144:13118-13137 Msa1459230:CDS 40.0%
CAGTCTTCTGATTCTCCAAT+GGG - tig0040144:13119-13138 Msa1459230:CDS 40.0%
AGTCTTCTGATTCTCCAATG+GGG - tig0040144:13120-13139 Msa1459230:CDS 40.0%
CATGCAATCAGTGAATTAGC+CGG - tig0040144:13181-13200 Msa1459230:CDS 40.0%
!! TTGTTTTGCTTGGTGACTGA+TGG - tig0040144:13344-13363 Msa1459230:five_prime_UTR 40.0%
!! TGTTTTGCTTGGTGACTGAT+GGG - tig0040144:13345-13364 Msa1459230:five_prime_UTR 40.0%
CACGGACAGAATGATAGTTA+AGG + tig0040144:13504-13523 None:intergenic 40.0%
!! GCTAAAAGAGGAGAGTGTTG+TGG - tig0040144:11358-11377 Msa1459230:three_prime_UTR 45.0%
GACAAACGAGAGAGAAAGAG+AGG - tig0040144:11393-11412 Msa1459230:three_prime_UTR 45.0%
TGCATGTAGAGTAGTAGAGC+TGG - tig0040144:11429-11448 Msa1459230:three_prime_UTR 45.0%
AGAGGTGGTAGCAAACATGT+TGG - tig0040144:11479-11498 Msa1459230:three_prime_UTR 45.0%
! AGGGAATTAAGGGTATGTGG+TGG + tig0040144:11602-11621 None:intergenic 45.0%
CAGCTGGAATCGATGATCAA+CGG + tig0040144:11783-11802 None:intergenic 45.0%
TCCCAGATCAACTCATCACA+TGG - tig0040144:11859-11878 Msa1459230:CDS 45.0%
!! CCCATGTGATGAGTTGATCT+GGG + tig0040144:11863-11882 None:intergenic 45.0%
CCCAGATCAACTCATCACAT+GGG - tig0040144:11860-11879 Msa1459230:CDS 45.0%
!! TCCCATGTGATGAGTTGATC+TGG + tig0040144:11864-11883 None:intergenic 45.0%
TGCAGTAAGCTAGCTGAGTT+TGG - tig0040144:11970-11989 Msa1459230:CDS 45.0%
GCAGTAAGCTAGCTGAGTTT+GGG - tig0040144:11971-11990 Msa1459230:CDS 45.0%
GAAGATCACTAACAAACCGG+GGG + tig0040144:12089-12108 None:intergenic 45.0%
!! ACTCTGTGTCACTTGAGCTA+GGG + tig0040144:12644-12663 None:intergenic 45.0%
!! TACTCTGTGTCACTTGAGCT+AGG + tig0040144:12645-12664 None:intergenic 45.0%
AGTGCCAACACTTCATCTCT+TGG + tig0040144:12735-12754 None:intergenic 45.0%
TCAGAGATTCTCTCCCACAA+AGG + tig0040144:12831-12850 None:intergenic 45.0%
TTGTGGGAGAGAATCTCTGA+AGG - tig0040144:12831-12850 Msa1459230:intron 45.0%
GAATCAGAAGACTGAGCTTG+AGG + tig0040144:13113-13132 None:intergenic 45.0%
!! GCTAAAAGAGGAGAGTGTTG+TGG - tig0040144:11358-11377 Msa1459230:three_prime_UTR 45.0%
GACAAACGAGAGAGAAAGAG+AGG - tig0040144:11393-11412 Msa1459230:three_prime_UTR 45.0%
TGCATGTAGAGTAGTAGAGC+TGG - tig0040144:11429-11448 Msa1459230:three_prime_UTR 45.0%
AGAGGTGGTAGCAAACATGT+TGG - tig0040144:11479-11498 Msa1459230:three_prime_UTR 45.0%
! AGGGAATTAAGGGTATGTGG+TGG + tig0040144:11602-11621 None:intergenic 45.0%
CAGCTGGAATCGATGATCAA+CGG + tig0040144:11783-11802 None:intergenic 45.0%
TCCCAGATCAACTCATCACA+TGG - tig0040144:11859-11878 Msa1459230:CDS 45.0%
!! CCCATGTGATGAGTTGATCT+GGG + tig0040144:11863-11882 None:intergenic 45.0%
CCCAGATCAACTCATCACAT+GGG - tig0040144:11860-11879 Msa1459230:CDS 45.0%
!! TCCCATGTGATGAGTTGATC+TGG + tig0040144:11864-11883 None:intergenic 45.0%
TGCAGTAAGCTAGCTGAGTT+TGG - tig0040144:11970-11989 Msa1459230:CDS 45.0%
GCAGTAAGCTAGCTGAGTTT+GGG - tig0040144:11971-11990 Msa1459230:CDS 45.0%
GAAGATCACTAACAAACCGG+GGG + tig0040144:12089-12108 None:intergenic 45.0%
!! ACTCTGTGTCACTTGAGCTA+GGG + tig0040144:12644-12663 None:intergenic 45.0%
!! TACTCTGTGTCACTTGAGCT+AGG + tig0040144:12645-12664 None:intergenic 45.0%
AGTGCCAACACTTCATCTCT+TGG + tig0040144:12735-12754 None:intergenic 45.0%
TCAGAGATTCTCTCCCACAA+AGG + tig0040144:12831-12850 None:intergenic 45.0%
TTGTGGGAGAGAATCTCTGA+AGG - tig0040144:12831-12850 Msa1459230:intron 45.0%
GAATCAGAAGACTGAGCTTG+AGG + tig0040144:13113-13132 None:intergenic 45.0%
! AGTGGTGTTAGGAGAGTGGT+GGG + tig0040144:11715-11734 None:intergenic 50.0%
! TAGTGGTGTTAGGAGAGTGG+TGG + tig0040144:11716-11735 None:intergenic 50.0%
! AGGTAGTGGTGTTAGGAGAG+TGG + tig0040144:11719-11738 None:intergenic 50.0%
!! GATCAACGGTGGTGGAGTTT+GGG + tig0040144:11769-11788 None:intergenic 50.0%
!! TGATCAACGGTGGTGGAGTT+TGG + tig0040144:11770-11789 None:intergenic 50.0%
GAATCGATGATCAACGGTGG+TGG + tig0040144:11777-11796 None:intergenic 50.0%
CTGGAATCGATGATCAACGG+TGG + tig0040144:11780-11799 None:intergenic 50.0%
!! CGTTGATCATCGATTCCAGC+TGG - tig0040144:11781-11800 Msa1459230:CDS 50.0%
AAGTTCGTCGTTAGTCCAGC+TGG + tig0040144:11799-11818 None:intergenic 50.0%
TCACATGGGACCATGTCTCA+AGG - tig0040144:11874-11893 Msa1459230:CDS 50.0%
!! AGCTTGCTAGAGAGGAAGCA+TGG - tig0040144:12406-12425 Msa1459230:CDS 50.0%
AGGCACAACAAGGGTAGAAG+TGG + tig0040144:12676-12695 None:intergenic 50.0%
GTGGCCAAGAGATGAAGTGT+TGG - tig0040144:12728-12747 Msa1459230:CDS 50.0%
TCAGAAGACTGAGCTTGAGG+TGG + tig0040144:13110-13129 None:intergenic 50.0%
! TTTGCTTGGTGACTGATGGG+AGG - tig0040144:13348-13367 Msa1459230:five_prime_UTR 50.0%
! TTGGTGACTGATGGGAGGAT+GGG - tig0040144:13353-13372 Msa1459230:five_prime_UTR 50.0%
! AGTGGTGTTAGGAGAGTGGT+GGG + tig0040144:11715-11734 None:intergenic 50.0%
! TAGTGGTGTTAGGAGAGTGG+TGG + tig0040144:11716-11735 None:intergenic 50.0%
! AGGTAGTGGTGTTAGGAGAG+TGG + tig0040144:11719-11738 None:intergenic 50.0%
!! GATCAACGGTGGTGGAGTTT+GGG + tig0040144:11769-11788 None:intergenic 50.0%
!! TGATCAACGGTGGTGGAGTT+TGG + tig0040144:11770-11789 None:intergenic 50.0%
GAATCGATGATCAACGGTGG+TGG + tig0040144:11777-11796 None:intergenic 50.0%
CTGGAATCGATGATCAACGG+TGG + tig0040144:11780-11799 None:intergenic 50.0%
!! CGTTGATCATCGATTCCAGC+TGG - tig0040144:11781-11800 Msa1459230:CDS 50.0%
AAGTTCGTCGTTAGTCCAGC+TGG + tig0040144:11799-11818 None:intergenic 50.0%
TCACATGGGACCATGTCTCA+AGG - tig0040144:11874-11893 Msa1459230:CDS 50.0%
!! AGCTTGCTAGAGAGGAAGCA+TGG - tig0040144:12406-12425 Msa1459230:CDS 50.0%
AGGCACAACAAGGGTAGAAG+TGG + tig0040144:12676-12695 None:intergenic 50.0%
GTGGCCAAGAGATGAAGTGT+TGG - tig0040144:12728-12747 Msa1459230:CDS 50.0%
TCAGAAGACTGAGCTTGAGG+TGG + tig0040144:13110-13129 None:intergenic 50.0%
! TTTGCTTGGTGACTGATGGG+AGG - tig0040144:13348-13367 Msa1459230:five_prime_UTR 50.0%
! TTGGTGACTGATGGGAGGAT+GGG - tig0040144:13353-13372 Msa1459230:five_prime_UTR 50.0%
! GTGGTGTTAGGAGAGTGGTG+GGG + tig0040144:11714-11733 None:intergenic 55.0%
TAATCAGCAGCAGCAGCAGC+AGG - tig0040144:13016-13035 Msa1459230:CDS 55.0%
AATCAGCAGCAGCAGCAGCA+GGG - tig0040144:13017-13036 Msa1459230:CDS 55.0%
! CTTGGTGACTGATGGGAGGA+TGG - tig0040144:13352-13371 Msa1459230:five_prime_UTR 55.0%
TGGTGACTGATGGGAGGATG+GGG - tig0040144:13354-13373 Msa1459230:five_prime_UTR 55.0%
! GTGGTGTTAGGAGAGTGGTG+GGG + tig0040144:11714-11733 None:intergenic 55.0%
TAATCAGCAGCAGCAGCAGC+AGG - tig0040144:13016-13035 Msa1459230:CDS 55.0%
AATCAGCAGCAGCAGCAGCA+GGG - tig0040144:13017-13036 Msa1459230:CDS 55.0%
! CTTGGTGACTGATGGGAGGA+TGG - tig0040144:13352-13371 Msa1459230:five_prime_UTR 55.0%
TGGTGACTGATGGGAGGATG+GGG - tig0040144:13354-13373 Msa1459230:five_prime_UTR 55.0%
!! ACGGTGGTGGAGTTTGGGTC+TGG + tig0040144:11764-11783 None:intergenic 60.0%
!! ACGGTGGTGGAGTTTGGGTC+TGG + tig0040144:11764-11783 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0040144 gene 11235 13531 11235 ID=Msa1459230;Name=Msa1459230
tig0040144 mRNA 11235 13531 11235 ID=Msa1459230-mRNA-1;Parent=Msa1459230;Name=Msa1459230-mRNA-1;_AED=0.02;_eAED=0.02;_QI=260|1|1|1|1|1|2|386|523
tig0040144 exon 11235 12791 11235 ID=Msa1459230-mRNA-1:exon:22167;Parent=Msa1459230-mRNA-1
tig0040144 exon 12871 13531 12871 ID=Msa1459230-mRNA-1:exon:22166;Parent=Msa1459230-mRNA-1
tig0040144 five_prime_UTR 13272 13531 13272 ID=Msa1459230-mRNA-1:five_prime_utr;Parent=Msa1459230-mRNA-1
tig0040144 CDS 12871 13271 12871 ID=Msa1459230-mRNA-1:cds;Parent=Msa1459230-mRNA-1
tig0040144 CDS 11621 12791 11621 ID=Msa1459230-mRNA-1:cds;Parent=Msa1459230-mRNA-1
tig0040144 three_prime_UTR 11235 11620 11235 ID=Msa1459230-mRNA-1:three_prime_utr;Parent=Msa1459230-mRNA-1
Gene Sequence

>Msa1459230

ATGTTGGATGAAAGAGGAAAGCATTTTGAATTTGAGCAATTGAGGAGTACTACTAGTCTTCTTGGTTCGTCTTCTTCTTCTGTTGCAAACATCAACAGCACCTTCCACCACATACCCTTAATTCCCTCTACTTCTTCTTCCAATTCTCATTCTCCTCATCATCAATTTCCACTTCAAACTCAAACAAACCTCTTCCACCCATCAATACTATCATTGCCCCACCACTCTCCTAACACCACTACCTTTAATTCTAATTCAATCAACTTCCAGACCCAAACTCCACCACCGTTGATCATCGATTCCAGCTGGACTAACGACGAACTTCTTCTACTCTTCAAGATCACATCTACCATTCACAATTTCTTCCCAGATCAACTCATCACATGGGACCATGTCTCAAGTAAGCTAGCTGAGTTTGGGATCAAGAAGAGTGCTCAAAATTGTAAGGAGAAGTTTGAACATGAGAACACATCATTTATGAAGATTCATAACAATCATAATGATAATAATTTCCCCCGGTTTGTTAGTGATCTTCAAGATCTTTATCAAGGTGGTGGTGTTAGTGTTGATAATAAACAACCAAATCCTGACGAAAACAAAAATACCCAACACGAAGAAGATGATTCGAGAGATGATAGAGTAGAGACCAAACACTGTGATGATGATGACAAGGTGATGATGGAGAAATCAAAGAACAAAAAGAGGAAGAGGCGCCGTGATAGATTTGAAATGTTGAAGAGTTTTTGTGAGACAGTGGTTAACAAAATAATTGCACAACAAGAAGAAATACACAATAAGCTACTTGAAGACATGCTCAAAAGAGATCAAGAAAAGCTTGCTAGAGAGGAAGCATGGAAAAAACAAGAGATTGAAAGGATGAACATGATGGTACAACAACAAGAAGCTATTGCAAGTGATAGACAAGCCAACATCATTGAATTCTTGAACAAATATCTAGCCACAGGATATTCTTCTTCTTCTTCACAATTGCACTCACAAAACCCTAATAATCCTTCTAACAATCTAGAATCAAAAACACCTTTTTCTAATGTGATAGCAGATCAAAACCCTAGCTCAAGTGACACAGAGTACTCAAATTCCACTTCTACCCTTGTTGTGCCTACAATAATGGAGAAATTAGAGGATAGGAGAAGGTGGCCAAGAGATGAAGTGTTGGCACTCATAAACCTCAAGTCTACTACAAGTGTTACAAACAGAAGCAACAATAATGTTGAAGGAAATAGTAATAAGGGACCTTTGTGGGAGAGAATCTCTGAAGGAATGTTTGAGTTGGGATACAAGAGAAGTGCAAAGAGGTGTAAAGAAAAATGGGAAAACATAAACAAGTATTTTAAAAAGACAAAGGATATTGTTGTGAATAAGAAGAAAAGGTCAATGGATTCTAGGACTTGTCCTTATTTTCATCAACTCAGTTCTTTGTATAATCAGCAGCAGCAGCAGCAGGGAAAAATAATTGATCCTCAATTAACCAAACATCCAACCTCCAATTCAAATGGTCATATTGTAGATGATCCACCTCAAGCTCAGTCTTCTGATTCTCCAATGGGGTAG
Protein sequence

>Msa1459230

MLDERGKHFEFEQLRSTTSLLGSSSSSVANINSTFHHIPLIPSTSSSNSHSPHHQFPLQTQTNLFHPSILSLPHHSPNTTTFNSNSINFQTQTPPPLIIDSSWTNDELLLLFKITSTIHNFFPDQLITWDHVSSKLAEFGIKKSAQNCKEKFEHENTSFMKIHNNHNDNNFPRFVSDLQDLYQGGGVSVDNKQPNPDENKNTQHEEDDSRDDRVETKHCDDDDKVMMEKSKNKKRKRRRDRFEMLKSFCETVVNKIIAQQEEIHNKLLEDMLKRDQEKLAREEAWKKQEIERMNMMVQQQEAIASDRQANIIEFLNKYLATGYSSSSSQLHSQNPNNPSNNLESKTPFSNVIADQNPSSSDTEYSNSTSTLVVPTIMEKLEDRRRWPRDEVLALINLKSTTSVTNRSNNNVEGNSNKGPLWERISEGMFELGYKRSAKRCKEKWENINKYFKKTKDIVVNKKKRSMDSRTCPYFHQLSSLYNQQQQQQGKIIDPQLTKHPTSNSNGHIVDDPPQAQSSDSPMG*