Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189160 | XP_003593057.1 | 95.706 | 815 | 28 | 1 | 1 | 815 | 1 | 808 | 0.0 | 1608 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189160 | G7IJX0 | 95.706 | 815 | 28 | 1 | 1 | 815 | 1 | 808 | 0.0 | 1608 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0189160 | Msa0270740 | 0.883282 | 5.117960e-71 | -8.615850e-47 |
| Msa0189160 | Msa0309480 | 0.862797 | 3.928055e-64 | -8.615850e-47 |
| Msa0189160 | Msa1452760 | 0.961469 | 9.723868e-120 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189160 | MtrunA17_Chr2g0278061 | 95.706 | 815 | 28 | 1 | 1 | 815 | 1 | 808 | 0.0 | 1608 |
| Msa0189160 | MtrunA17_Chr6g0484301 | 33.281 | 634 | 366 | 16 | 160 | 780 | 92 | 681 | 2.70e-83 | 280 |
| Msa0189160 | MtrunA17_Chr1g0212431 | 28.670 | 722 | 450 | 14 | 104 | 791 | 43 | 733 | 5.67e-79 | 270 |
| Msa0189160 | MtrunA17_Chr7g0253851 | 25.339 | 663 | 412 | 17 | 160 | 783 | 46 | 664 | 3.02e-44 | 170 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189160 | AT1G71240.2 | 59.023 | 798 | 308 | 7 | 21 | 808 | 35 | 823 | 0.0 | 935 |
| Msa0189160 | AT1G71240.1 | 58.949 | 799 | 308 | 8 | 21 | 808 | 35 | 824 | 0.0 | 931 |
| Msa0189160 | AT1G71240.3 | 58.039 | 622 | 242 | 7 | 21 | 632 | 35 | 647 | 0.0 | 711 |
| Msa0189160 | AT3G18350.3 | 30.861 | 674 | 414 | 16 | 122 | 783 | 49 | 682 | 2.12e-83 | 281 |
| Msa0189160 | AT3G18350.1 | 30.861 | 674 | 414 | 16 | 122 | 783 | 49 | 682 | 2.12e-83 | 281 |
| Msa0189160 | AT3G18350.2 | 30.861 | 674 | 414 | 16 | 122 | 783 | 49 | 682 | 2.12e-83 | 281 |
| Msa0189160 | AT1G48840.1 | 29.762 | 672 | 417 | 12 | 122 | 780 | 49 | 678 | 3.18e-78 | 267 |
| Msa0189160 | AT5G23390.1 | 29.046 | 723 | 421 | 17 | 118 | 793 | 53 | 730 | 1.25e-72 | 253 |
| Msa0189160 | AT2G21720.1 | 24.545 | 660 | 423 | 14 | 160 | 782 | 107 | 728 | 6.56e-48 | 182 |
| Msa0189160 | AT2G21720.2 | 24.434 | 663 | 423 | 14 | 160 | 782 | 107 | 731 | 1.61e-47 | 181 |
Find 167 sgRNAs with CRISPR-Local
Find 398 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCTGACTGTTGGGTTTCT+TGG | 0.043925 | 2_1:+4478881 | Msa0189160:CDS |
| AGGGGTATTATTGATTATTT+AGG | 0.148836 | 2_1:+4480110 | Msa0189160:three_prime_UTR |
| TTACCCTTGCTTTGGTTTCC+TGG | 0.185007 | 2_1:-4479830 | None:intergenic |
| AAGGCAAAAGTTGGGCCTTT+AGG | 0.222763 | 2_1:+4477666 | Msa0189160:CDS |
| TCAATACATTCAATCTTTCT+TGG | 0.227087 | 2_1:-4475429 | None:intergenic |
| TTCTAGGGAGCTGGCTTATT+GGG | 0.234930 | 2_1:+4477591 | Msa0189160:intron |
| AACTTTAGCTGTTAACTATT+GGG | 0.250174 | 2_1:+4478286 | Msa0189160:CDS |
| TCTGCTGTTTCTATTTCTTC+TGG | 0.255306 | 2_1:+4477705 | Msa0189160:CDS |
| TGCAGAGAAGGCTTCTTTAC+AGG | 0.257249 | 2_1:+4476613 | Msa0189160:CDS |
| AAACTTTAGCTGTTAACTAT+TGG | 0.257963 | 2_1:+4478285 | Msa0189160:CDS |
| GTTCTAGGGAGCTGGCTTAT+TGG | 0.295279 | 2_1:+4477590 | Msa0189160:intron |
| CACAAGTTCACGCATGAGTA+TGG | 0.303668 | 2_1:+4478077 | Msa0189160:CDS |
| ATATAGTGATGCTCGTAATT+TGG | 0.314944 | 2_1:+4476212 | Msa0189160:CDS |
| AGGCAAAAGTTGGGCCTTTA+GGG | 0.316742 | 2_1:+4477667 | Msa0189160:CDS |
| GAGTCTAGCAATACCATTAA+TGG | 0.319435 | 2_1:-4478165 | None:intergenic |
| GCAACGAGCAGTGCCATTAA+TGG | 0.329071 | 2_1:+4478152 | Msa0189160:CDS |
| AATAGTTAACAGCTAAAGTT+TGG | 0.330311 | 2_1:-4478283 | None:intergenic |
| GGGGTATTATTGATTATTTA+GGG | 0.335828 | 2_1:+4480111 | Msa0189160:three_prime_UTR |
| GTGAGATGAGGAGGGATGTT+TGG | 0.340477 | 2_1:+4478024 | Msa0189160:CDS |
| GCATCACTATATACAGCTTC+TGG | 0.341679 | 2_1:-4476201 | None:intergenic |
| CATTCATACTTAGGTCGAAT+TGG | 0.347539 | 2_1:+4477973 | Msa0189160:intron |
| TGGGGAAGTCAACTGGTTAC+AGG | 0.349503 | 2_1:+4478305 | Msa0189160:CDS |
| GTAGAGTACGTCGAGAAAAT+AGG | 0.356259 | 2_1:+4477233 | Msa0189160:intron |
| AGAAGCCTTCTCTGCATTGC+TGG | 0.368515 | 2_1:-4476606 | None:intergenic |
| AACAAGCAAACAAAAGTATC+AGG | 0.371038 | 2_1:+4478559 | Msa0189160:CDS |
| TTGCGAGCCTCGAAAACATT+AGG | 0.375872 | 2_1:-4478116 | None:intergenic |
| ATCCGGACTTACCCTTGCTT+TGG | 0.379147 | 2_1:-4479838 | None:intergenic |
| TTTGTTCTCAAGTTCCTTCA+AGG | 0.390824 | 2_1:-4479798 | None:intergenic |
| TCTGAAGTGGGAGAATAATA+TGG | 0.392011 | 2_1:+4477333 | Msa0189160:CDS |
| GTGGATGAAATCTCCATCTT+GGG | 0.392487 | 2_1:+4478430 | Msa0189160:CDS |
| GGTGCTGGAATTTATTGACT+TGG | 0.398798 | 2_1:+4477998 | Msa0189160:CDS |
| AGGAGCCACACCTGACTGTT+GGG | 0.401607 | 2_1:+4478873 | Msa0189160:CDS |
| CTGCTCTTTCAGTGAGCGTT+AGG | 0.402602 | 2_1:-4478532 | None:intergenic |
| TCTGTAAGCAACCCTGAAAA+TGG | 0.404792 | 2_1:-4479868 | None:intergenic |
| TATTCATAACAATGCTTGCC+TGG | 0.405685 | 2_1:+4476558 | Msa0189160:CDS |
| TTAAGGAGCAAGGCCGCCTT+GGG | 0.405878 | 2_1:+4479260 | Msa0189160:CDS |
| AGATTGGATCTTACATATGA+TGG | 0.406083 | 2_1:+4477630 | Msa0189160:CDS |
| CTTAAGGAGCAAGGCCGCCT+TGG | 0.406837 | 2_1:+4479259 | Msa0189160:CDS |
| CAAGGCGGCCTTGCTCCTTA+AGG | 0.408441 | 2_1:-4479258 | None:intergenic |
| CTGTTGGAATGCTGACAATC+AGG | 0.413827 | 2_1:+4479233 | Msa0189160:CDS |
| TAGATCAGAAGTTTCCTTGA+AGG | 0.419759 | 2_1:+4479784 | Msa0189160:CDS |
| TTATTCTCCCACTTCAGAAC+AGG | 0.421954 | 2_1:-4477328 | None:intergenic |
| TTGCTGTGCTGATGTTAACT+TGG | 0.422067 | 2_1:+4479579 | Msa0189160:CDS |
| TAACTATTGGGGAAGTCAAC+TGG | 0.425585 | 2_1:+4478298 | Msa0189160:CDS |
| TTTCTGATGTTCTAGGGAGC+TGG | 0.434072 | 2_1:+4477582 | Msa0189160:intron |
| TCAAAAGGTAAAACTGCTAC+TGG | 0.437504 | 2_1:-4479749 | None:intergenic |
| CGTATTGCTCCTGCAGTCTC+TGG | 0.440071 | 2_1:+4476871 | Msa0189160:CDS |
| TCAGTAAGAGTGAGTTTGCC+AGG | 0.440174 | 2_1:-4477361 | None:intergenic |
| TGGAAGAACACTTCAACAAA+AGG | 0.440603 | 2_1:+4478476 | Msa0189160:CDS |
| GAGTATGGACCTGATGAGTA+TGG | 0.441232 | 2_1:+4478092 | Msa0189160:CDS |
| AGTGGATGAAATCTCCATCT+TGG | 0.442947 | 2_1:+4478429 | Msa0189160:CDS |
| CGAGTAGAGAAGGCAAAAGT+TGG | 0.445116 | 2_1:+4477657 | Msa0189160:CDS |
| TGATGTCGGATTTCAAGTTA+TGG | 0.445504 | 2_1:+4475534 | Msa0189160:CDS |
| ATCGACCGCAAAATGCCATA+TGG | 0.446830 | 2_1:+4475583 | Msa0189160:CDS |
| CTGGAAAGGACATAAGTGTA+AGG | 0.451462 | 2_1:-4476587 | None:intergenic |
| GAATAAGAGAGCCATGAGAT+TGG | 0.456321 | 2_1:+4477614 | Msa0189160:CDS |
| GCTCGAGTTCCGGAGGGAAA+TGG | 0.457901 | 2_1:+4479673 | Msa0189160:CDS |
| TCCGCAAATGTTGAAGGGCC+TGG | 0.459300 | 2_1:-4478187 | None:intergenic |
| GCCGTGATCATCAGCATCAC+TGG | 0.459913 | 2_1:-4479211 | None:intergenic |
| CCTTCTCTGCATTGCTGGAA+AGG | 0.461809 | 2_1:-4476601 | None:intergenic |
| TTTCAGTGTTGCAGCATCAA+TGG | 0.463847 | 2_1:-4478603 | None:intergenic |
| GTGCTGGAATTTATTGACTT+GGG | 0.465419 | 2_1:+4477999 | Msa0189160:CDS |
| CTGAAAATGGTATCACTATC+CGG | 0.470032 | 2_1:-4479855 | None:intergenic |
| TTCTAGAAGTAGAAGTAGAA+TGG | 0.470386 | 2_1:-4474106 | None:intergenic |
| AGTTATGGAAGATATATTGA+TGG | 0.470473 | 2_1:+4475549 | Msa0189160:CDS |
| GAAGTGTCTACTTGCGGAAG+TGG | 0.475480 | 2_1:+4478411 | Msa0189160:CDS |
| AAGGAAAGAATGTACTTGAA+TGG | 0.477040 | 2_1:-4479623 | None:intergenic |
| TCACACGCGAGCTCGAGTTC+CGG | 0.478210 | 2_1:+4479663 | Msa0189160:CDS |
| CTTGAACTGAATCAAAGAAA+AGG | 0.478406 | 2_1:+4473987 | Msa0189160:five_prime_UTR |
| AACCAAAGCAAGGGTAAGTC+CGG | 0.478888 | 2_1:+4479836 | Msa0189160:CDS |
| TCCAGGCCCTTCAACATTTG+CGG | 0.483948 | 2_1:+4478186 | Msa0189160:CDS |
| TGCTGTGCTGATGTTAACTT+GGG | 0.486580 | 2_1:+4479580 | Msa0189160:CDS |
| TCGTCAATTTGGGGAAACTC+TGG | 0.487298 | 2_1:-4477268 | None:intergenic |
| GCAACTTCCGCAAATGTTGA+AGG | 0.489333 | 2_1:-4478193 | None:intergenic |
| GTCCAAGAAACCCAACAGTC+AGG | 0.490129 | 2_1:-4478883 | None:intergenic |
| ACATTAGGTCCATACTCATC+AGG | 0.492111 | 2_1:-4478101 | None:intergenic |
| AGATGTTCTCAACTGAATCA+TGG | 0.493438 | 2_1:-4474048 | None:intergenic |
| GAGGAGCCACACCTGACTGT+TGG | 0.496915 | 2_1:+4478872 | Msa0189160:CDS |
| GTAAGCTAGCCACGTGCTCA+TGG | 0.498875 | 2_1:-4476959 | None:intergenic |
| TAGGTCGAATTGGTGGGTGC+TGG | 0.499409 | 2_1:+4477983 | Msa0189160:intron |
| ACTTCAACCATCTTCAATGT+TGG | 0.500212 | 2_1:+4480041 | Msa0189160:three_prime_UTR |
| CAGAACAGGCTGCTTACTGT+TGG | 0.503796 | 2_1:-4477314 | None:intergenic |
| CAAGAAATGAGATAATAAGT+TGG | 0.506219 | 2_1:-4474071 | None:intergenic |
| GCAAAAGAAAGATTCCCATA+TGG | 0.513468 | 2_1:-4475598 | None:intergenic |
| AATATCAGCCTCTGGAAAGC+GGG | 0.514217 | 2_1:-4476539 | None:intergenic |
| CCTTTCCAGCAATGCAGAGA+AGG | 0.514369 | 2_1:+4476601 | Msa0189160:CDS |
| TCATACTTAGGTCGAATTGG+TGG | 0.514687 | 2_1:+4477976 | Msa0189160:intron |
| GCTGACAATCAGGAGCCTTA+AGG | 0.517159 | 2_1:+4479243 | Msa0189160:CDS |
| GTCTCTCAACCATTTCCCTC+CGG | 0.518293 | 2_1:-4479682 | None:intergenic |
| CAAACAAAAGTATCAGGTTG+TGG | 0.518733 | 2_1:+4478565 | Msa0189160:CDS |
| CGATGTTCATCCTTCTCTCC+AGG | 0.522452 | 2_1:+4476275 | Msa0189160:CDS |
| GAGGAGAAAATCTTATGCAT+TGG | 0.523563 | 2_1:+4477289 | Msa0189160:CDS |
| ACTTGGGAGGTGAGATGAGG+AGG | 0.526000 | 2_1:+4478015 | Msa0189160:CDS |
| GATGTTCTCAACTGAATCAT+GGG | 0.527238 | 2_1:-4474047 | None:intergenic |
| TTGTTATGAATATCAGCCTC+TGG | 0.529371 | 2_1:-4476547 | None:intergenic |
| TTTACTTTCTGGAAATCCAC+AGG | 0.530087 | 2_1:+4479423 | Msa0189160:CDS |
| ATATGAGAACTGAACGAGCT+TGG | 0.533561 | 2_1:-4478228 | None:intergenic |
| TGCAGGATGAGTGGATTGAC+TGG | 0.534598 | 2_1:+4476144 | Msa0189160:intron |
| GAGAATAATATGGCATGGCC+TGG | 0.536619 | 2_1:+4477343 | Msa0189160:CDS |
| TCATACTAGCACTTAGGTCA+TGG | 0.538906 | 2_1:-4474190 | None:intergenic |
| TGGAGGACAATATCACCATT+CGG | 0.539224 | 2_1:-4478263 | None:intergenic |
| TCGACCGCAAAATGCCATAT+GGG | 0.539432 | 2_1:+4475584 | Msa0189160:CDS |
| ATTCATAACAATGCTTGCCT+GGG | 0.539656 | 2_1:+4476559 | Msa0189160:CDS |
| ATGAGAACCAACATTGAAGA+TGG | 0.542342 | 2_1:-4480048 | None:intergenic |
| ACTTTGAAAAGCTAAGGCAC+TGG | 0.543129 | 2_1:+4478849 | Msa0189160:CDS |
| GAGAACTGAACGAGCTTGGT+AGG | 0.548947 | 2_1:-4478224 | None:intergenic |
| CACGCGAGCTCGAGTTCCGG+AGG | 0.549944 | 2_1:+4479666 | Msa0189160:CDS |
| TGATGGATTGCGAGTAGAGA+AGG | 0.549980 | 2_1:+4477647 | Msa0189160:CDS |
| AGTTAACAGCTAAAGTTTGG+AGG | 0.552405 | 2_1:-4478280 | None:intergenic |
| ATGCTGATGATCACGGCTGT+TGG | 0.555284 | 2_1:+4479217 | Msa0189160:CDS |
| TTGACTTGGGAGGTGAGATG+AGG | 0.556699 | 2_1:+4478012 | Msa0189160:CDS |
| TAATGGTATTGCTAGACTCC+AGG | 0.558014 | 2_1:+4478169 | Msa0189160:CDS |
| CATACTTAGGTCGAATTGGT+GGG | 0.558496 | 2_1:+4477977 | Msa0189160:intron |
| ACTTTAGCTGTTAACTATTG+GGG | 0.561658 | 2_1:+4478287 | Msa0189160:CDS |
| GAATGGAACAATGAAGAGAA+TGG | 0.562748 | 2_1:-4479606 | None:intergenic |
| ATATGAAGAATCCAAAGAGC+TGG | 0.562753 | 2_1:-4479964 | None:intergenic |
| ATTGATGCTGCAACACTGAA+AGG | 0.562919 | 2_1:+4478605 | Msa0189160:CDS |
| TCCAGTGATGCTGATGATCA+CGG | 0.563212 | 2_1:+4479210 | Msa0189160:CDS |
| AAAACTGCTACTGGAGCAGC+AGG | 0.563294 | 2_1:-4479740 | None:intergenic |
| CCCTTGCTTTGGTTTCCTGG+TGG | 0.568291 | 2_1:-4479827 | None:intergenic |
| CTTTGAAAAGCTAAGGCACT+GGG | 0.569092 | 2_1:+4478850 | Msa0189160:CDS |
| GAACATGTCGAAGAGAAGAA+AGG | 0.570428 | 2_1:-4479642 | None:intergenic |
| GGAAATGCCATCTTGATCAC+CGG | 0.576492 | 2_1:-4476938 | None:intergenic |
| AATACGAACAAAAGCCTCCT+CGG | 0.579655 | 2_1:-4476854 | None:intergenic |
| CTTGGGAGGTGAGATGAGGA+GGG | 0.580323 | 2_1:+4478016 | Msa0189160:CDS |
| TCTAGGGAGCTGGCTTATTG+GGG | 0.581399 | 2_1:+4477592 | Msa0189160:intron |
| TATGTATTGAGCAATTCAGC+AGG | 0.582629 | 2_1:+4475629 | Msa0189160:CDS |
| GTAAGCAGCCTGTTCTGAAG+TGG | 0.584299 | 2_1:+4477320 | Msa0189160:CDS |
| TGCTCCTGCAGTCTCTGGTG+TGG | 0.585301 | 2_1:+4476876 | Msa0189160:CDS |
| GAGTAGAGAAGGCAAAAGTT+GGG | 0.585980 | 2_1:+4477658 | Msa0189160:CDS |
| GCTCTTGCCGGTGATCAAGA+TGG | 0.590317 | 2_1:+4476931 | Msa0189160:CDS |
| CATATTCTCAACGTCACGCA+TGG | 0.590696 | 2_1:-4479359 | None:intergenic |
| TCAACCACACCAGAGACTGC+AGG | 0.591724 | 2_1:-4476880 | None:intergenic |
| AATAAGATATGCAGGATGAG+TGG | 0.593032 | 2_1:+4476135 | Msa0189160:intron |
| TGGAAAGGACATAAGTGTAA+GGG | 0.593431 | 2_1:-4476586 | None:intergenic |
| ATGGAATCATACTAGCACTT+AGG | 0.594258 | 2_1:-4474196 | None:intergenic |
| ATATGTAAGATCCAATCTCA+TGG | 0.594666 | 2_1:-4477625 | None:intergenic |
| ATCAGGAGCCTTAAGGAGCA+AGG | 0.597787 | 2_1:+4479250 | Msa0189160:CDS |
| TAAGCAGCCTGTTCTGAAGT+GGG | 0.599132 | 2_1:+4477321 | Msa0189160:CDS |
| TATAGGATCCCGCTTTCCAG+AGG | 0.599863 | 2_1:+4476531 | Msa0189160:intron |
| GTACACAATACCTGGAGAGA+AGG | 0.600769 | 2_1:-4476285 | None:intergenic |
| TGGATGAAATCTCCATCTTG+GGG | 0.602032 | 2_1:+4478431 | Msa0189160:CDS |
| GATTGAATGTATTGATGTCG+AGG | 0.603380 | 2_1:+4475437 | Msa0189160:CDS |
| ACCACCAGGAAACCAAAGCA+AGG | 0.604338 | 2_1:+4479826 | Msa0189160:CDS |
| CCTGATCCTGAAAATGATGT+CGG | 0.608502 | 2_1:+4475520 | Msa0189160:CDS |
| AGATGGTTGAAGTTAATGAG+AGG | 0.609992 | 2_1:-4480031 | None:intergenic |
| CAACTTCCGCAAATGTTGAA+GGG | 0.611672 | 2_1:-4478192 | None:intergenic |
| GAATATCAGCCTCTGGAAAG+CGG | 0.613934 | 2_1:-4476540 | None:intergenic |
| CCACCAGGAAACCAAAGCAA+GGG | 0.634475 | 2_1:+4479827 | Msa0189160:CDS |
| TATTTACAGAATGCACCGAA+TGG | 0.642261 | 2_1:+4478248 | Msa0189160:CDS |
| CTGGAATTTATTGACTTGGG+AGG | 0.644215 | 2_1:+4478002 | Msa0189160:CDS |
| AAAGATTGTGCACTGTGGGG+CGG | 0.646077 | 2_1:-4476903 | None:intergenic |
| AGTGGGAGAATAATATGGCA+TGG | 0.658208 | 2_1:+4477338 | Msa0189160:CDS |
| AGAGTTTCCCCAAATTGACG+AGG | 0.658413 | 2_1:+4477270 | Msa0189160:CDS |
| ACGCGAGCTCGAGTTCCGGA+GGG | 0.658637 | 2_1:+4479667 | Msa0189160:CDS |
| CTGGAGAGAAGGATGAACAT+CGG | 0.665857 | 2_1:-4476274 | None:intergenic |
| GTTGAGTAAGAATCATGTTG+TGG | 0.669931 | 2_1:+4478505 | Msa0189160:CDS |
| AGAAACCCAACAGTCAGGTG+TGG | 0.672520 | 2_1:-4478878 | None:intergenic |
| TCGACGGAAGTGTCTACTTG+CGG | 0.673498 | 2_1:+4478405 | Msa0189160:CDS |
| GGATGAAATCTCCATCTTGG+GGG | 0.678739 | 2_1:+4478432 | Msa0189160:CDS |
| ATGGCATTTCCATGAGCACG+TGG | 0.679080 | 2_1:+4476950 | Msa0189160:CDS |
| GAGAACAAATCAAAACCACC+AGG | 0.683386 | 2_1:+4479812 | Msa0189160:CDS |
| CCTTTGTCAGATAACAACTG+AGG | 0.688692 | 2_1:+4479556 | Msa0189160:intron |
| GAGTAAACTTGTCACCGAGG+AGG | 0.690606 | 2_1:+4476840 | Msa0189160:intron |
| GCAGGATGAGTGGATTGACT+GGG | 0.700024 | 2_1:+4476145 | Msa0189160:intron |
| TGAAAAGCTAAGGCACTGGG+AGG | 0.732429 | 2_1:+4478853 | Msa0189160:CDS |
| GCAGAGTAAACTTGTCACCG+AGG | 0.737987 | 2_1:+4476837 | Msa0189160:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTGTTAATTTAATATCAA+TGG | + | chr2_1:4476011-4476030 | Msa0189160:intron | 10.0% |
| !!! | GTTTATTTATGATCAAATTT+TGG | + | chr2_1:4474760-4474779 | Msa0189160:intron | 15.0% |
| !!! | TGTTTAATTTAAGTAATAGT+AGG | - | chr2_1:4474788-4474807 | None:intergenic | 15.0% |
| !!! | TAATTATCCATAAACTTTTT+AGG | + | chr2_1:4475182-4475201 | Msa0189160:intron | 15.0% |
| !! | AATAAAATGGATGAATAAAA+TGG | - | chr2_1:4476413-4476432 | None:intergenic | 15.0% |
| !! | CTAATTGAAAATGAATAAAA+TGG | - | chr2_1:4476426-4476445 | None:intergenic | 15.0% |
| !! | TTATATAATCAACAAAAAGA+TGG | - | chr2_1:4477017-4477036 | None:intergenic | 15.0% |
| !! | ATTAGAAATATAATTGATCA+AGG | - | chr2_1:4478728-4478747 | None:intergenic | 15.0% |
| !!! | AATATCTTTTTTCTTTTGAT+TGG | + | chr2_1:4478745-4478764 | Msa0189160:intron | 15.0% |
| !!! | ATATCTTTTTTCTTTTGATT+GGG | + | chr2_1:4478746-4478765 | Msa0189160:intron | 15.0% |
| !!! | TTTCCTATACATTAATTTTT+AGG | + | chr2_1:4478906-4478925 | Msa0189160:CDS | 15.0% |
| !! | TTACCTAAAAATTAATGTAT+AGG | - | chr2_1:4478912-4478931 | None:intergenic | 15.0% |
| !!! | TTTTTTTTCTGTAAACTTAT+TGG | + | chr2_1:4479024-4479043 | Msa0189160:intron | 15.0% |
| !!! | TTTTTTTCTGTAAACTTATT+GGG | + | chr2_1:4479025-4479044 | Msa0189160:intron | 15.0% |
| !! | ATATTATATTATAATACCTG+TGG | - | chr2_1:4479442-4479461 | None:intergenic | 15.0% |
| !! | TTATAATATAATATCATGCA+TGG | + | chr2_1:4479448-4479467 | Msa0189160:intron | 15.0% |
| !! | ATTTAGTTATAACTTACATT+CGG | + | chr2_1:4479481-4479500 | Msa0189160:intron | 15.0% |
| !!! | TTTTTGCTGTAAATAAAAAT+AGG | + | chr2_1:4479919-4479938 | Msa0189160:three_prime_UTR | 15.0% |
| !!! | TCTTCTCATTTTTTTTTATA+AGG | + | chr2_1:4480083-4480102 | Msa0189160:three_prime_UTR | 15.0% |
| !!! | TCATTTTACTTTTCGATTTA+TGG | + | chr2_1:4473959-4473978 | Msa0189160:five_prime_UTR | 20.0% |
| !!! | TAGGTTCTAAAATATGATAA+TGG | - | chr2_1:4474336-4474355 | None:intergenic | 20.0% |
| !! | TGTAAATGCAAATTATGTTA+TGG | + | chr2_1:4474427-4474446 | Msa0189160:intron | 20.0% |
| !!! | TAAGTATAAGCTATTTCTAT+AGG | - | chr2_1:4474574-4474593 | None:intergenic | 20.0% |
| !! | AAACATACATGGAATAATAT+AGG | - | chr2_1:4474686-4474705 | None:intergenic | 20.0% |
| !! | ACTTTCTTCTTTGTATAAAA+AGG | - | chr2_1:4474934-4474953 | None:intergenic | 20.0% |
| !!! | TTTTATACAAAGAAGAAAGT+AGG | + | chr2_1:4474934-4474953 | Msa0189160:intron | 20.0% |
| !! | AATCTATCCTAAAAAGTTTA+TGG | - | chr2_1:4475192-4475211 | None:intergenic | 20.0% |
| !! | TTCGTTAATATATTATCGTT+TGG | - | chr2_1:4475733-4475752 | None:intergenic | 20.0% |
| !! | ATATACCTATAAACATTTCA+AGG | - | chr2_1:4475906-4475925 | None:intergenic | 20.0% |
| !!! | GATACTATTATTTGACTTTT+TGG | + | chr2_1:4476111-4476130 | Msa0189160:intron | 20.0% |
| !!! | TTATTTGAGTTAACATTCAT+CGG | + | chr2_1:4477847-4477866 | Msa0189160:intron | 20.0% |
| !!! | TTTTACTTACATTCATACTT+AGG | + | chr2_1:4477964-4477983 | Msa0189160:intron | 20.0% |
| !!! | AATTAGTTTTCTCATATTCA+AGG | + | chr2_1:4479049-4479068 | Msa0189160:intron | 20.0% |
| !!! | ACTTGTTGAAAATGTTAATT+TGG | + | chr2_1:4479106-4479125 | Msa0189160:intron | 20.0% |
| !! | CTTGTTGAAAATGTTAATTT+GGG | + | chr2_1:4479107-4479126 | Msa0189160:intron | 20.0% |
| !!! | ATCTTTTGTATTGTATTTGA+CGG | - | chr2_1:4479322-4479341 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTTATAAGGAGAG+AGG | + | chr2_1:4480090-4480109 | Msa0189160:three_prime_UTR | 20.0% |
| !!! | TTTTTTTTTATAAGGAGAGA+GGG | + | chr2_1:4480091-4480110 | Msa0189160:three_prime_UTR | 20.0% |
| ! | CAAGAAATGAGATAATAAGT+TGG | - | chr2_1:4474074-4474093 | None:intergenic | 25.0% |
| !! | AAGTTTTCATTCAAGTCTTT+AGG | + | chr2_1:4474152-4474171 | Msa0189160:CDS | 25.0% |
| !! | TATTGGATGTATGTTTCTAA+TGG | + | chr2_1:4474261-4474280 | Msa0189160:intron | 25.0% |
| !!! | AATAAGTTGTTTTTCCAAAC+AGG | + | chr2_1:4474632-4474651 | Msa0189160:intron | 25.0% |
| !!! | ATAAGTTGTTTTTCCAAACA+GGG | + | chr2_1:4474633-4474652 | Msa0189160:intron | 25.0% |
| ! | TAGCATATCATATTTGTACT+TGG | - | chr2_1:4474659-4474678 | None:intergenic | 25.0% |
| !! | TATTCCATGTATGTTTCTAA+TGG | + | chr2_1:4474690-4474709 | Msa0189160:intron | 25.0% |
| ! | AATTCCATTAGAAACATACA+TGG | - | chr2_1:4474268-4474287 | None:intergenic | 25.0% |
| ! | CTAATGATTCGATTTAATGT+CGG | + | chr2_1:4474900-4474919 | Msa0189160:intron | 25.0% |
| ! | TTGTGAGCTTAACTATTAAA+AGG | + | chr2_1:4475311-4475330 | Msa0189160:intron | 25.0% |
| ! | GGATAGAATCTTCAAAAAAT+TGG | - | chr2_1:4475411-4475430 | None:intergenic | 25.0% |
| ! | TCAATACATTCAATCTTTCT+TGG | - | chr2_1:4475432-4475451 | None:intergenic | 25.0% |
| ! | AGTTATGGAAGATATATTGA+TGG | + | chr2_1:4475549-4475568 | Msa0189160:CDS | 25.0% |
| ! | ATTCAAGACTAAGTTACATA+TGG | + | chr2_1:4475752-4475771 | Msa0189160:intron | 25.0% |
| !!! | TTTTTGGAAATAAGATATGC+AGG | + | chr2_1:4476127-4476146 | Msa0189160:intron | 25.0% |
| !! | TGTTTTGTATAAGTTAACCA+CGG | + | chr2_1:4476352-4476371 | Msa0189160:intron | 25.0% |
| ! | ATAAAATGGAATACCAAAAG+AGG | - | chr2_1:4476399-4476418 | None:intergenic | 25.0% |
| !! | TGAGTGATTTTCTTTTGTTA+GGG | + | chr2_1:4476727-4476746 | Msa0189160:intron | 25.0% |
| !!! | TATGATTTTGAGAGATCATT+TGG | + | chr2_1:4476806-4476825 | Msa0189160:intron | 25.0% |
| !!! | ATGATTTTGAGAGATCATTT+GGG | + | chr2_1:4476807-4476826 | Msa0189160:intron | 25.0% |
| ! | GTTGATTATATAATGACCTT+AGG | + | chr2_1:4477024-4477043 | Msa0189160:intron | 25.0% |
| ! | ACTAACTATCCAGATAAAAT+GGG | - | chr2_1:4477150-4477169 | None:intergenic | 25.0% |
| !! | TGATAAAGCAATCTATTTTG+AGG | + | chr2_1:4477381-4477400 | Msa0189160:CDS | 25.0% |
| !!! | TTCAAGATTTTAAGTAGGAT+TGG | + | chr2_1:4477453-4477472 | Msa0189160:intron | 25.0% |
| !! | TTTATGTTTTCTGATGTTCT+AGG | + | chr2_1:4477575-4477594 | Msa0189160:intron | 25.0% |
| !! | TTATGTTTTCTGATGTTCTA+GGG | + | chr2_1:4477576-4477595 | Msa0189160:intron | 25.0% |
| !!! | AATTCTAAGACAGAAAAAAC+TGG | - | chr2_1:4477765-4477784 | None:intergenic | 25.0% |
| !!! | TTTTTTCTGTCTTAGAATTG+TGG | + | chr2_1:4477766-4477785 | Msa0189160:intron | 25.0% |
| ! | AATAGTTAACAGCTAAAGTT+TGG | - | chr2_1:4478286-4478305 | None:intergenic | 25.0% |
| ! | AAACTTTAGCTGTTAACTAT+TGG | + | chr2_1:4478285-4478304 | Msa0189160:CDS | 25.0% |
| ! | AACTTTAGCTGTTAACTATT+GGG | + | chr2_1:4478286-4478305 | Msa0189160:CDS | 25.0% |
| ! | TTAAAAAGATCAATGTTGCT+TGG | - | chr2_1:4478635-4478654 | None:intergenic | 25.0% |
| !! | AAGCAACATTGATCTTTTTA+AGG | + | chr2_1:4478634-4478653 | Msa0189160:CDS | 25.0% |
| !!! | AACATTGATCTTTTTAAGGT+TGG | + | chr2_1:4478638-4478657 | Msa0189160:intron | 25.0% |
| ! | ATTAAAGGAACACAAAATCA+AGG | - | chr2_1:4478672-4478691 | None:intergenic | 25.0% |
| ! | GAAATTGTGAGAATCATTAA+AGG | - | chr2_1:4478687-4478706 | None:intergenic | 25.0% |
| !! | AAGGTTTTCTCAATAGTTAA+AGG | - | chr2_1:4478709-4478728 | None:intergenic | 25.0% |
| ! | ATTGGGTTTCAAAAGTAATA+TGG | + | chr2_1:4478763-4478782 | Msa0189160:intron | 25.0% |
| !! | TTCAAAGTTTTTGACAGTTA+AGG | - | chr2_1:4478837-4478856 | None:intergenic | 25.0% |
| !! | TCAAAAACTTTGAAAAGCTA+AGG | + | chr2_1:4478843-4478862 | Msa0189160:CDS | 25.0% |
| ! | AAATAATCATCTTCAGACAA+CGG | - | chr2_1:4478962-4478981 | None:intergenic | 25.0% |
| ! | TTTCAACAAGTATGTTCTAT+GGG | - | chr2_1:4479097-4479116 | None:intergenic | 25.0% |
| !! | TTTTCAACAAGTATGTTCTA+TGG | - | chr2_1:4479098-4479117 | None:intergenic | 25.0% |
| !! | ATACGTTCAATTTTACTTTC+TGG | + | chr2_1:4479412-4479431 | Msa0189160:CDS | 25.0% |
| !!! | TTTTTTTTATAAGGAGAGAG+GGG | + | chr2_1:4480092-4480111 | Msa0189160:three_prime_UTR | 25.0% |
| !!! | AGGGGTATTATTGATTATTT+AGG | + | chr2_1:4480110-4480129 | Msa0189160:three_prime_UTR | 25.0% |
| !! | GGGGTATTATTGATTATTTA+GGG | + | chr2_1:4480111-4480130 | Msa0189160:three_prime_UTR | 25.0% |
| CTTGAACTGAATCAAAGAAA+AGG | + | chr2_1:4473987-4474006 | Msa0189160:five_prime_UTR | 30.0% | |
| TTGAAGAAGAAGAAGAAGAA+TGG | + | chr2_1:4474013-4474032 | Msa0189160:exon | 30.0% | |
| TGAAGAAGAAGAAGAAGAAT+GGG | + | chr2_1:4474014-4474033 | Msa0189160:exon | 30.0% | |
| ! | TTCTAGAAGTAGAAGTAGAA+TGG | - | chr2_1:4474109-4474128 | None:intergenic | 30.0% |
| AAGAGTGAGTAATGAATGAA+TGG | - | chr2_1:4474218-4474237 | None:intergenic | 30.0% | |
| ACAAATAGGTGGTTAACTAA+TGG | - | chr2_1:4474359-4474378 | None:intergenic | 30.0% | |
| AATCCAAAAAACAAACAGTC+TGG | - | chr2_1:4474399-4474418 | None:intergenic | 30.0% | |
| AAATGGTAGCTTCTCAAATA+TGG | - | chr2_1:4474814-4474833 | None:intergenic | 30.0% | |
| AAAAACAAACAGTCTGGAAA+TGG | - | chr2_1:4474831-4474850 | None:intergenic | 30.0% | |
| !!! | TTTCCAGACTGTTTGTTTTT+TGG | + | chr2_1:4474831-4474850 | Msa0189160:intron | 30.0% |
| AATCCAAAAAACAAACAGTC+TGG | - | chr2_1:4474399-4474418 | None:intergenic | 30.0% | |
| CGACATTAAATCGAATCATT+AGG | - | chr2_1:4474902-4474921 | None:intergenic | 30.0% | |
| !! | CTCACAAACAGAAAGTATTA+AGG | - | chr2_1:4475298-4475317 | None:intergenic | 30.0% |
| GAAGAGACACTACATAATTT+AGG | - | chr2_1:4475357-4475376 | None:intergenic | 30.0% | |
| AATTATGTAGTGTCTCTTCT+TGG | + | chr2_1:4475358-4475377 | Msa0189160:intron | 30.0% | |
| ! | AACTTTTCTATACTGCTACT+TGG | + | chr2_1:4475694-4475713 | Msa0189160:intron | 30.0% |
| !! | ACTTTTCTATACTGCTACTT+GGG | + | chr2_1:4475695-4475714 | Msa0189160:intron | 30.0% |
| !! | TTATCGTTTGGTGTATTCAT+TGG | - | chr2_1:4475721-4475740 | None:intergenic | 30.0% |
| !! | TAATTGTTTTGTGCATTCCA+AGG | - | chr2_1:4475791-4475810 | None:intergenic | 30.0% |
| CTGTTATTACGTTGTTCTTA+CGG | - | chr2_1:4475830-4475849 | None:intergenic | 30.0% | |
| !! | TTTGGCCTTGAAATGTTTAT+AGG | + | chr2_1:4475898-4475917 | Msa0189160:intron | 30.0% |
| AGTATCTGTATCAGTTTGAT+AGG | - | chr2_1:4476097-4476116 | None:intergenic | 30.0% | |
| ATATAGTGATGCTCGTAATT+TGG | + | chr2_1:4476212-4476231 | Msa0189160:CDS | 30.0% | |
| !! | CTGCTTTAGATTTTTGTCAA+GGG | + | chr2_1:4476245-4476264 | Msa0189160:CDS | 30.0% |
| ! | AATTTGCATTTGACCTCTTT+TGG | + | chr2_1:4476383-4476402 | Msa0189160:intron | 30.0% |
| ! | GTGAGTGATTTTCTTTTGTT+AGG | + | chr2_1:4476726-4476745 | Msa0189160:intron | 30.0% |
| ! | TTCTTTTGTTAGGGATTTCT+TGG | + | chr2_1:4476736-4476755 | Msa0189160:intron | 30.0% |
| TTAAAAAGATTGTGCACTGT+GGG | - | chr2_1:4476910-4476929 | None:intergenic | 30.0% | |
| ATCCCTGAGTTAAAGATAAA+TGG | + | chr2_1:4477076-4477095 | Msa0189160:intron | 30.0% | |
| GACCATTTATCTTTAACTCA+GGG | - | chr2_1:4477081-4477100 | None:intergenic | 30.0% | |
| AGACCATTTATCTTTAACTC+AGG | - | chr2_1:4477082-4477101 | None:intergenic | 30.0% | |
| !! | GAACTAGAAGCATTTGAAAT+CGG | - | chr2_1:4477117-4477136 | None:intergenic | 30.0% |
| !! | TCAAATGCTTCTAGTTCATT+AGG | + | chr2_1:4477120-4477139 | Msa0189160:intron | 30.0% |
| CACTAACTATCCAGATAAAA+TGG | - | chr2_1:4477151-4477170 | None:intergenic | 30.0% | |
| !! | TCAGGTTCAAGATTTTAAGT+AGG | + | chr2_1:4477448-4477467 | Msa0189160:intron | 30.0% |
| !! | AGATTTTAAGTAGGATTGGT+AGG | + | chr2_1:4477457-4477476 | Msa0189160:intron | 30.0% |
| ATATGTAAGATCCAATCTCA+TGG | - | chr2_1:4477628-4477647 | None:intergenic | 30.0% | |
| AGATTGGATCTTACATATGA+TGG | + | chr2_1:4477630-4477649 | Msa0189160:CDS | 30.0% | |
| ACTTTAGCTGTTAACTATTG+GGG | + | chr2_1:4478287-4478306 | Msa0189160:CDS | 30.0% | |
| !!! | CTAGTACTTCTACTAGTTTT+TGG | + | chr2_1:4478456-4478475 | Msa0189160:CDS | 30.0% |
| !! | AACAAGCAAACAAAAGTATC+AGG | + | chr2_1:4478559-4478578 | Msa0189160:CDS | 30.0% |
| ! | TTTTTGACAGTTAAGGTGAT+AGG | - | chr2_1:4478830-4478849 | None:intergenic | 30.0% |
| ! | TTTTGTATTGTATTTGACGG+TGG | - | chr2_1:4479319-4479338 | None:intergenic | 30.0% |
| AAGGAAAGAATGTACTTGAA+TGG | - | chr2_1:4479626-4479645 | None:intergenic | 30.0% | |
| ! | CTAGATTCTTCGTTTTCAAA+AGG | - | chr2_1:4479767-4479786 | None:intergenic | 30.0% |
| GAAGAAGAAGAAGAAGAATG+GGG | + | chr2_1:4474015-4474034 | Msa0189160:exon | 35.0% | |
| GATGTTCTCAACTGAATCAT+GGG | - | chr2_1:4474050-4474069 | None:intergenic | 35.0% | |
| AGATGTTCTCAACTGAATCA+TGG | - | chr2_1:4474051-4474070 | None:intergenic | 35.0% | |
| ATGGAATCATACTAGCACTT+AGG | - | chr2_1:4474199-4474218 | None:intergenic | 35.0% | |
| ATAGGTGGTTAACTAATGGT+AGG | - | chr2_1:4474355-4474374 | None:intergenic | 35.0% | |
| AATGGTAGGTTGTCACAAAT+AGG | - | chr2_1:4474373-4474392 | None:intergenic | 35.0% | |
| AAACAAACAGTCTGGACAAA+TGG | - | chr2_1:4474391-4474410 | None:intergenic | 35.0% | |
| !!! | TGTCCAGACTGTTTGTTTTT+TGG | + | chr2_1:4474393-4474412 | Msa0189160:intron | 35.0% |
| ! | GTTTTCATAAGCAATCTTGG+AGG | - | chr2_1:4474505-4474524 | None:intergenic | 35.0% |
| !! | GCTGTTTTCATAAGCAATCT+TGG | - | chr2_1:4474508-4474527 | None:intergenic | 35.0% |
| ! | GATTGAATGTATTGATGTCG+AGG | + | chr2_1:4475437-4475456 | Msa0189160:CDS | 35.0% |
| ! | TGAAATCCGACATCATTTTC+AGG | - | chr2_1:4475529-4475548 | None:intergenic | 35.0% |
| !! | TGATGTCGGATTTCAAGTTA+TGG | + | chr2_1:4475534-4475553 | Msa0189160:CDS | 35.0% |
| GCAAAAGAAAGATTCCCATA+TGG | - | chr2_1:4475601-4475620 | None:intergenic | 35.0% | |
| TATGTATTGAGCAATTCAGC+AGG | + | chr2_1:4475629-4475648 | Msa0189160:CDS | 35.0% | |
| AATTCAGCAGGTGAATTACA+TGG | + | chr2_1:4475641-4475660 | Msa0189160:intron | 35.0% | |
| AAAAGACAAGACCATCGTTA+AGG | - | chr2_1:4476051-4476070 | None:intergenic | 35.0% | |
| AATAAGATATGCAGGATGAG+TGG | + | chr2_1:4476135-4476154 | Msa0189160:intron | 35.0% | |
| !! | GCTGCTTTAGATTTTTGTCA+AGG | + | chr2_1:4476244-4476263 | Msa0189160:CDS | 35.0% |
| TTGCTCTTGAACACGTTTAT+AGG | + | chr2_1:4476514-4476533 | Msa0189160:intron | 35.0% | |
| TTGTTATGAATATCAGCCTC+TGG | - | chr2_1:4476550-4476569 | None:intergenic | 35.0% | |
| TATTCATAACAATGCTTGCC+TGG | + | chr2_1:4476558-4476577 | Msa0189160:CDS | 35.0% | |
| ATTCATAACAATGCTTGCCT+GGG | + | chr2_1:4476559-4476578 | Msa0189160:CDS | 35.0% | |
| TGGAAAGGACATAAGTGTAA+GGG | - | chr2_1:4476589-4476608 | None:intergenic | 35.0% | |
| TAAAAAGATTGTGCACTGTG+GGG | - | chr2_1:4476909-4476928 | None:intergenic | 35.0% | |
| CTTAAAAAGATTGTGCACTG+TGG | - | chr2_1:4476911-4476930 | None:intergenic | 35.0% | |
| ! | CACAGTGCACAATCTTTTTA+AGG | + | chr2_1:4476909-4476928 | Msa0189160:CDS | 35.0% |
| !!! | AATCTTTTTAAGGCTCTTGC+CGG | + | chr2_1:4476919-4476938 | Msa0189160:CDS | 35.0% |
| ! | TTAGGTGTTCCCATTTTATC+TGG | + | chr2_1:4477138-4477157 | Msa0189160:intron | 35.0% |
| ! | TGCTGAACTTGTACTGATAT+TGG | + | chr2_1:4477209-4477228 | Msa0189160:intron | 35.0% |
| ! | ATTTTCTCCTCGTCAATTTG+GGG | - | chr2_1:4477280-4477299 | None:intergenic | 35.0% |
| ! | GATTTTCTCCTCGTCAATTT+GGG | - | chr2_1:4477281-4477300 | None:intergenic | 35.0% |
| ! | AGATTTTCTCCTCGTCAATT+TGG | - | chr2_1:4477282-4477301 | None:intergenic | 35.0% |
| GAGGAGAAAATCTTATGCAT+TGG | + | chr2_1:4477289-4477308 | Msa0189160:CDS | 35.0% | |
| ! | TCTGAAGTGGGAGAATAATA+TGG | + | chr2_1:4477333-4477352 | Msa0189160:CDS | 35.0% |
| GTAAAAGATCGTAAACACGA+GGG | + | chr2_1:4477483-4477502 | Msa0189160:intron | 35.0% | |
| !! | TCTGCTGTTTCTATTTCTTC+TGG | + | chr2_1:4477705-4477724 | Msa0189160:CDS | 35.0% |
| TCAAATAACCAGAACATCAG+AGG | - | chr2_1:4477835-4477854 | None:intergenic | 35.0% | |
| CAAAAAGCAACAGAGAAAAG+TGG | - | chr2_1:4477899-4477918 | None:intergenic | 35.0% | |
| CATTCATACTTAGGTCGAAT+TGG | + | chr2_1:4477973-4477992 | Msa0189160:intron | 35.0% | |
| !! | GTGCTGGAATTTATTGACTT+GGG | + | chr2_1:4477999-4478018 | Msa0189160:CDS | 35.0% |
| GAGTCTAGCAATACCATTAA+TGG | - | chr2_1:4478168-4478187 | None:intergenic | 35.0% | |
| TATTTACAGAATGCACCGAA+TGG | + | chr2_1:4478248-4478267 | Msa0189160:CDS | 35.0% | |
| AGTTAACAGCTAAAGTTTGG+AGG | - | chr2_1:4478283-4478302 | None:intergenic | 35.0% | |
| ! | TCGTTAGAAGTTCGATTTTC+TGG | - | chr2_1:4478353-4478372 | None:intergenic | 35.0% |
| !! | AACCATGTTTTTGACATCGA+CGG | + | chr2_1:4478389-4478408 | Msa0189160:CDS | 35.0% |
| TGGAAGAACACTTCAACAAA+AGG | + | chr2_1:4478476-4478495 | Msa0189160:CDS | 35.0% | |
| GTTGAGTAAGAATCATGTTG+TGG | + | chr2_1:4478505-4478524 | Msa0189160:CDS | 35.0% | |
| !! | CAAACAAAAGTATCAGGTTG+TGG | + | chr2_1:4478565-4478584 | Msa0189160:CDS | 35.0% |
| GATATATGAGAGCAAGTTTC+TGG | - | chr2_1:4479188-4479207 | None:intergenic | 35.0% | |
| ! | TTTACTTTCTGGAAATCCAC+AGG | + | chr2_1:4479423-4479442 | Msa0189160:CDS | 35.0% |
| GTTGTTATCTGACAAAGGAT+TGG | - | chr2_1:4479554-4479573 | None:intergenic | 35.0% | |
| GAATGGAACAATGAAGAGAA+TGG | - | chr2_1:4479609-4479628 | None:intergenic | 35.0% | |
| !! | TCACGAAACTTTTAAGAGAG+CGG | + | chr2_1:4479705-4479724 | Msa0189160:CDS | 35.0% |
| TCAAAAGGTAAAACTGCTAC+TGG | - | chr2_1:4479752-4479771 | None:intergenic | 35.0% | |
| TAGATCAGAAGTTTCCTTGA+AGG | + | chr2_1:4479784-4479803 | Msa0189160:CDS | 35.0% | |
| TTTGTTCTCAAGTTCCTTCA+AGG | - | chr2_1:4479801-4479820 | None:intergenic | 35.0% | |
| CTGAAAATGGTATCACTATC+CGG | - | chr2_1:4479858-4479877 | None:intergenic | 35.0% | |
| ! | GGATAGTGATACCATTTTCA+GGG | + | chr2_1:4479857-4479876 | Msa0189160:exon | 35.0% |
| ATATGAAGAATCCAAAGAGC+TGG | - | chr2_1:4479967-4479986 | None:intergenic | 35.0% | |
| AGATGGTTGAAGTTAATGAG+AGG | - | chr2_1:4480034-4480053 | None:intergenic | 35.0% | |
| ACTTCAACCATCTTCAATGT+TGG | + | chr2_1:4480041-4480060 | Msa0189160:three_prime_UTR | 35.0% | |
| ATGAGAACCAACATTGAAGA+TGG | - | chr2_1:4480051-4480070 | None:intergenic | 35.0% | |
| TCATACTAGCACTTAGGTCA+TGG | - | chr2_1:4474193-4474212 | None:intergenic | 40.0% | |
| AAACAGTCTGGACAAATGGT+AGG | - | chr2_1:4474387-4474406 | None:intergenic | 40.0% | |
| TATTTGTACTTGGCCCTGTT+TGG | - | chr2_1:4474649-4474668 | None:intergenic | 40.0% | |
| AAGAAAGTAGGAGCCAATGA+AGG | + | chr2_1:4474946-4474965 | Msa0189160:intron | 40.0% | |
| AAGTGCAGTTTAGGTGAGTA+GGG | - | chr2_1:4475125-4475144 | None:intergenic | 40.0% | |
| AAAGTGCAGTTTAGGTGAGT+AGG | - | chr2_1:4475126-4475145 | None:intergenic | 40.0% | |
| ACTCACCTAAACTGCACTTT+CGG | + | chr2_1:4475126-4475145 | Msa0189160:intron | 40.0% | |
| AGACTGTTTAGGAGAGCTTA+CGG | + | chr2_1:4475149-4475168 | Msa0189160:intron | 40.0% | |
| CCTGATCCTGAAAATGATGT+CGG | + | chr2_1:4475520-4475539 | Msa0189160:CDS | 40.0% | |
| ! | GATTCCCATATGGCATTTTG+CGG | - | chr2_1:4475591-4475610 | None:intergenic | 40.0% |
| ATGGTTTGAACTTGTGTCCT+TGG | + | chr2_1:4475771-4475790 | Msa0189160:intron | 40.0% | |
| GTTGTTCTTACGGTAGCTTT+GGG | - | chr2_1:4475820-4475839 | None:intergenic | 40.0% | |
| CCAAAGAAGAAACAAGAGAG+TGG | - | chr2_1:4475883-4475902 | None:intergenic | 40.0% | |
| ! | CCACTCTCTTGTTTCTTCTT+TGG | + | chr2_1:4475880-4475899 | Msa0189160:intron | 40.0% |
| TGTGATTCTTGTGCTAGCTA+TGG | + | chr2_1:4475987-4476006 | Msa0189160:intron | 40.0% | |
| GTGATTCTTGTGCTAGCTAT+GGG | + | chr2_1:4475988-4476007 | Msa0189160:intron | 40.0% | |
| TCTGAATCCTTCCTTAACGA+TGG | + | chr2_1:4476037-4476056 | Msa0189160:intron | 40.0% | |
| GCATCACTATATACAGCTTC+TGG | - | chr2_1:4476204-4476223 | None:intergenic | 40.0% | |
| ATAGAGCAGTACACAATACC+TGG | - | chr2_1:4476296-4476315 | None:intergenic | 40.0% | |
| ! | AGGTATTGTGTACTGCTCTA+TGG | + | chr2_1:4476295-4476314 | Msa0189160:intron | 40.0% |
| ATGCAAATTTGATGAGACCG+TGG | - | chr2_1:4476372-4476391 | None:intergenic | 40.0% | |
| ! | ATAAGTGTAAGGGTTTTCCC+AGG | - | chr2_1:4476579-4476598 | None:intergenic | 40.0% |
| CTGGAAAGGACATAAGTGTA+AGG | - | chr2_1:4476590-4476609 | None:intergenic | 40.0% | |
| CATTTCACATGCTCATAGAG+TGG | - | chr2_1:4476671-4476690 | None:intergenic | 40.0% | |
| AATACGAACAAAAGCCTCCT+CGG | - | chr2_1:4476857-4476876 | None:intergenic | 40.0% | |
| TGCTTGAATGTCTTCTCCTA+AGG | - | chr2_1:4477043-4477062 | None:intergenic | 40.0% | |
| GTAGAGTACGTCGAGAAAAT+AGG | + | chr2_1:4477233-4477252 | Msa0189160:intron | 40.0% | |
| TTATTCTCCCACTTCAGAAC+AGG | - | chr2_1:4477331-4477350 | None:intergenic | 40.0% | |
| AGTGGGAGAATAATATGGCA+TGG | + | chr2_1:4477338-4477357 | Msa0189160:CDS | 40.0% | |
| CTGTCTCATACAATGTAGTC+AGG | + | chr2_1:4477430-4477449 | Msa0189160:intron | 40.0% | |
| ! | TTTAAGTAGGATTGGTAGGC+TGG | + | chr2_1:4477461-4477480 | Msa0189160:intron | 40.0% |
| GGTAAAAGATCGTAAACACG+AGG | + | chr2_1:4477482-4477501 | Msa0189160:intron | 40.0% | |
| TCGTAACACGATTCGTAAGT+AGG | + | chr2_1:4477506-4477525 | Msa0189160:intron | 40.0% | |
| ACACGATTCGTAAGTAGGAT+TGG | + | chr2_1:4477511-4477530 | Msa0189160:intron | 40.0% | |
| ! | GATTCGTAAGTAGGATTGGT+AGG | + | chr2_1:4477515-4477534 | Msa0189160:intron | 40.0% |
| GAATAAGAGAGCCATGAGAT+TGG | + | chr2_1:4477614-4477633 | Msa0189160:CDS | 40.0% | |
| GAGTAGAGAAGGCAAAAGTT+GGG | + | chr2_1:4477658-4477677 | Msa0189160:CDS | 40.0% | |
| TCAAAAAGCGAAGACCCTAA+AGG | - | chr2_1:4477684-4477703 | None:intergenic | 40.0% | |
| AAAGCAACAGAGAAAAGTGG+AGG | - | chr2_1:4477896-4477915 | None:intergenic | 40.0% | |
| TCATACTTAGGTCGAATTGG+TGG | + | chr2_1:4477976-4477995 | Msa0189160:intron | 40.0% | |
| CATACTTAGGTCGAATTGGT+GGG | + | chr2_1:4477977-4477996 | Msa0189160:intron | 40.0% | |
| ! | GGTGCTGGAATTTATTGACT+TGG | + | chr2_1:4477998-4478017 | Msa0189160:CDS | 40.0% |
| !! | CTGGAATTTATTGACTTGGG+AGG | + | chr2_1:4478002-4478021 | Msa0189160:CDS | 40.0% |
| ACATTAGGTCCATACTCATC+AGG | - | chr2_1:4478104-4478123 | None:intergenic | 40.0% | |
| ! | GTATGGACCTAATGTTTTCG+AGG | + | chr2_1:4478109-4478128 | Msa0189160:CDS | 40.0% |
| TAATGGTATTGCTAGACTCC+AGG | + | chr2_1:4478169-4478188 | Msa0189160:CDS | 40.0% | |
| CAACTTCCGCAAATGTTGAA+GGG | - | chr2_1:4478195-4478214 | None:intergenic | 40.0% | |
| ATATGAGAACTGAACGAGCT+TGG | - | chr2_1:4478231-4478250 | None:intergenic | 40.0% | |
| TGGAGGACAATATCACCATT+CGG | - | chr2_1:4478266-4478285 | None:intergenic | 40.0% | |
| TAACTATTGGGGAAGTCAAC+TGG | + | chr2_1:4478298-4478317 | Msa0189160:CDS | 40.0% | |
| !!! | TTCGATTTTCTGGCTGATAG+CGG | - | chr2_1:4478343-4478362 | None:intergenic | 40.0% |
| TTCCGTCGATGTCAAAAACA+TGG | - | chr2_1:4478394-4478413 | None:intergenic | 40.0% | |
| AGTGGATGAAATCTCCATCT+TGG | + | chr2_1:4478429-4478448 | Msa0189160:CDS | 40.0% | |
| GTGGATGAAATCTCCATCTT+GGG | + | chr2_1:4478430-4478449 | Msa0189160:CDS | 40.0% | |
| TGGATGAAATCTCCATCTTG+GGG | + | chr2_1:4478431-4478450 | Msa0189160:CDS | 40.0% | |
| TTTCAGTGTTGCAGCATCAA+TGG | - | chr2_1:4478606-4478625 | None:intergenic | 40.0% | |
| ATTGATGCTGCAACACTGAA+AGG | + | chr2_1:4478605-4478624 | Msa0189160:CDS | 40.0% | |
| ! | ACTTTGAAAAGCTAAGGCAC+TGG | + | chr2_1:4478849-4478868 | Msa0189160:CDS | 40.0% |
| ! | CTTTGAAAAGCTAAGGCACT+GGG | + | chr2_1:4478850-4478869 | Msa0189160:CDS | 40.0% |
| CGGCAGAACAAAGAAAAATG+AGG | - | chr2_1:4478942-4478961 | None:intergenic | 40.0% | |
| ! | GTTTCTGGAAAGACACAACA+AGG | - | chr2_1:4479173-4479192 | None:intergenic | 40.0% |
| CCTCAGTTGTTATCTGACAA+AGG | - | chr2_1:4479559-4479578 | None:intergenic | 40.0% | |
| CCTTTGTCAGATAACAACTG+AGG | + | chr2_1:4479556-4479575 | Msa0189160:intron | 40.0% | |
| ! | TTGCTGTGCTGATGTTAACT+TGG | + | chr2_1:4479579-4479598 | Msa0189160:CDS | 40.0% |
| ! | TGCTGTGCTGATGTTAACTT+GGG | + | chr2_1:4479580-4479599 | Msa0189160:CDS | 40.0% |
| GAACATGTCGAAGAGAAGAA+AGG | - | chr2_1:4479645-4479664 | None:intergenic | 40.0% | |
| GAGAACAAATCAAAACCACC+AGG | + | chr2_1:4479812-4479831 | Msa0189160:CDS | 40.0% | |
| ! | CGGATAGTGATACCATTTTC+AGG | + | chr2_1:4479856-4479875 | Msa0189160:exon | 40.0% |
| TCTGTAAGCAACCCTGAAAA+TGG | - | chr2_1:4479871-4479890 | None:intergenic | 40.0% | |
| !! | CTAGCTTTTAACCAGCTCTT+TGG | + | chr2_1:4479953-4479972 | Msa0189160:three_prime_UTR | 40.0% |
| GGTAGGTTGTCACAAATAGG+TGG | - | chr2_1:4474370-4474389 | None:intergenic | 45.0% | |
| AAGTAGGAGCCAATGAAGGT+TGG | + | chr2_1:4474950-4474969 | Msa0189160:intron | 45.0% | |
| CCAACTAAGCCAACCTTCAT+TGG | - | chr2_1:4474962-4474981 | None:intergenic | 45.0% | |
| !! | CCAATGAAGGTTGGCTTAGT+TGG | + | chr2_1:4474959-4474978 | Msa0189160:intron | 45.0% |
| !! | TGAAGGTTGGCTTAGTTGGT+TGG | + | chr2_1:4474963-4474982 | Msa0189160:intron | 45.0% |
| ! | AAGAAGTTGACTCACCCAGA+AGG | + | chr2_1:4474987-4475006 | Msa0189160:intron | 45.0% |
| GTACTTACAACCCACCAAAG+AGG | - | chr2_1:4475046-4475065 | None:intergenic | 45.0% | |
| GGCTCAAAGAGTGGTAACAA+AGG | - | chr2_1:4475068-4475087 | None:intergenic | 45.0% | |
| TTACCACTCTTTGAGCCTTG+AGG | + | chr2_1:4475071-4475090 | Msa0189160:intron | 45.0% | |
| AGTTTAGGTGAGTAGGGCTT+TGG | - | chr2_1:4475119-4475138 | None:intergenic | 45.0% | |
| ! | AGTCTCCGAAAGTGCAGTTT+AGG | - | chr2_1:4475134-4475153 | None:intergenic | 45.0% |
| TGCACTTTCGGAGACTGTTT+AGG | + | chr2_1:4475138-4475157 | Msa0189160:intron | 45.0% | |
| ! | CTTTGACCAGTTTTTGCGAG+CGG | - | chr2_1:4475493-4475512 | None:intergenic | 45.0% |
| TCGCAAAAACTGGTCAAAGC+CGG | + | chr2_1:4475494-4475513 | Msa0189160:CDS | 45.0% | |
| !! | CATTTTCAGGATCAGGCTTC+CGG | - | chr2_1:4475516-4475535 | None:intergenic | 45.0% |
| !! | CCGACATCATTTTCAGGATC+AGG | - | chr2_1:4475523-4475542 | None:intergenic | 45.0% |
| ATCGACCGCAAAATGCCATA+TGG | + | chr2_1:4475583-4475602 | Msa0189160:CDS | 45.0% | |
| TCGACCGCAAAATGCCATAT+GGG | + | chr2_1:4475584-4475603 | Msa0189160:CDS | 45.0% | |
| CGTTGTTCTTACGGTAGCTT+TGG | - | chr2_1:4475821-4475840 | None:intergenic | 45.0% | |
| ! | GCGTTCTCTTCACAAGTTGA+TGG | + | chr2_1:4475940-4475959 | Msa0189160:intron | 45.0% |
| GACAAGACCATCGTTAAGGA+AGG | - | chr2_1:4476047-4476066 | None:intergenic | 45.0% | |
| CTGGAGAGAAGGATGAACAT+CGG | - | chr2_1:4476277-4476296 | None:intergenic | 45.0% | |
| GTACACAATACCTGGAGAGA+AGG | - | chr2_1:4476288-4476307 | None:intergenic | 45.0% | |
| ! | AATATCAGCCTCTGGAAAGC+GGG | - | chr2_1:4476542-4476561 | None:intergenic | 45.0% |
| ! | GAATATCAGCCTCTGGAAAG+CGG | - | chr2_1:4476543-4476562 | None:intergenic | 45.0% |
| TGCAGAGAAGGCTTCTTTAC+AGG | + | chr2_1:4476613-4476632 | Msa0189160:CDS | 45.0% | |
| GGAAATGCCATCTTGATCAC+CGG | - | chr2_1:4476941-4476960 | None:intergenic | 45.0% | |
| TCGTCAATTTGGGGAAACTC+TGG | - | chr2_1:4477271-4477290 | None:intergenic | 45.0% | |
| AGAGTTTCCCCAAATTGACG+AGG | + | chr2_1:4477270-4477289 | Msa0189160:CDS | 45.0% | |
| !! | TAAGCAGCCTGTTCTGAAGT+GGG | + | chr2_1:4477321-4477340 | Msa0189160:CDS | 45.0% |
| GAGAATAATATGGCATGGCC+TGG | + | chr2_1:4477343-4477362 | Msa0189160:CDS | 45.0% | |
| TCAGTAAGAGTGAGTTTGCC+AGG | - | chr2_1:4477364-4477383 | None:intergenic | 45.0% | |
| !! | TTTCTGATGTTCTAGGGAGC+TGG | + | chr2_1:4477582-4477601 | Msa0189160:intron | 45.0% |
| ! | TTCTAGGGAGCTGGCTTATT+GGG | + | chr2_1:4477591-4477610 | Msa0189160:intron | 45.0% |
| !! | TGATGGATTGCGAGTAGAGA+AGG | + | chr2_1:4477647-4477666 | Msa0189160:CDS | 45.0% |
| CGAGTAGAGAAGGCAAAAGT+TGG | + | chr2_1:4477657-4477676 | Msa0189160:CDS | 45.0% | |
| AAGGCAAAAGTTGGGCCTTT+AGG | + | chr2_1:4477666-4477685 | Msa0189160:CDS | 45.0% | |
| AGGCAAAAGTTGGGCCTTTA+GGG | + | chr2_1:4477667-4477686 | Msa0189160:CDS | 45.0% | |
| CACAAGTTCACGCATGAGTA+TGG | + | chr2_1:4478077-4478096 | Msa0189160:CDS | 45.0% | |
| GAGTATGGACCTGATGAGTA+TGG | + | chr2_1:4478092-4478111 | Msa0189160:CDS | 45.0% | |
| TTGCGAGCCTCGAAAACATT+AGG | - | chr2_1:4478119-4478138 | None:intergenic | 45.0% | |
| !! | AATGTTTTCGAGGCTCGCAA+AGG | + | chr2_1:4478119-4478138 | Msa0189160:CDS | 45.0% |
| GCAACTTCCGCAAATGTTGA+AGG | - | chr2_1:4478196-4478215 | None:intergenic | 45.0% | |
| !!! | TCGATTTTCTGGCTGATAGC+GGG | - | chr2_1:4478342-4478361 | None:intergenic | 45.0% |
| GGATGAAATCTCCATCTTGG+GGG | + | chr2_1:4478432-4478451 | Msa0189160:CDS | 45.0% | |
| CAGTAATCATGTTCCTGTGC+AGG | + | chr2_1:4478793-4478812 | Msa0189160:intron | 45.0% | |
| GGAAATATTAGCTCCTGCAC+AGG | - | chr2_1:4478809-4478828 | None:intergenic | 45.0% | |
| GGAAAGACACAACAAGGAAG+TGG | - | chr2_1:4479167-4479186 | None:intergenic | 45.0% | |
| TCCAGTGATGCTGATGATCA+CGG | + | chr2_1:4479210-4479229 | Msa0189160:CDS | 45.0% | |
| CTGTTGGAATGCTGACAATC+AGG | + | chr2_1:4479233-4479252 | Msa0189160:CDS | 45.0% | |
| CATATTCTCAACGTCACGCA+TGG | - | chr2_1:4479362-4479381 | None:intergenic | 45.0% | |
| !! | CGAAACTTTTAAGAGAGCGG+TGG | + | chr2_1:4479708-4479727 | Msa0189160:CDS | 45.0% |
| ! | TTACCCTTGCTTTGGTTTCC+TGG | - | chr2_1:4479833-4479852 | None:intergenic | 45.0% |
| AACCAAAGCAAGGGTAAGTC+CGG | + | chr2_1:4479836-4479855 | Msa0189160:CDS | 45.0% | |
| !!! | TTTTTTTTATTTCTTATTAT+TGG | + | chr2_1:4474244-4474263 | Msa0189160:intron | 5.0% |
| !! | AAAACATAAATAAAATAATA+TGG | - | chr2_1:4477565-4477584 | None:intergenic | 5.0% |
| TTCAGCTCCTGCTATCAGCA+CGG | + | chr2_1:4475017-4475036 | Msa0189160:intron | 50.0% | |
| TAGCCTCAAGGCTCAAAGAG+TGG | - | chr2_1:4475077-4475096 | None:intergenic | 50.0% | |
| !! | TAGGGCTTTGGAGCTCAACA+GGG | - | chr2_1:4475107-4475126 | None:intergenic | 50.0% |
| ACTTCTCCGCTCGCAAAAAC+TGG | + | chr2_1:4475484-4475503 | Msa0189160:CDS | 50.0% | |
| !! | TGCAGGATGAGTGGATTGAC+TGG | + | chr2_1:4476144-4476163 | Msa0189160:intron | 50.0% |
| !! | GCAGGATGAGTGGATTGACT+GGG | + | chr2_1:4476145-4476164 | Msa0189160:intron | 50.0% |
| CGATGTTCATCCTTCTCTCC+AGG | + | chr2_1:4476275-4476294 | Msa0189160:CDS | 50.0% | |
| TATAGGATCCCGCTTTCCAG+AGG | + | chr2_1:4476531-4476550 | Msa0189160:intron | 50.0% | |
| CCTTCTCTGCATTGCTGGAA+AGG | - | chr2_1:4476604-4476623 | None:intergenic | 50.0% | |
| CCTTTCCAGCAATGCAGAGA+AGG | + | chr2_1:4476601-4476620 | Msa0189160:CDS | 50.0% | |
| AGAAGCCTTCTCTGCATTGC+TGG | - | chr2_1:4476609-4476628 | None:intergenic | 50.0% | |
| GCAGAGTAAACTTGTCACCG+AGG | + | chr2_1:4476837-4476856 | Msa0189160:intron | 50.0% | |
| GAGTAAACTTGTCACCGAGG+AGG | + | chr2_1:4476840-4476859 | Msa0189160:intron | 50.0% | |
| AAAGATTGTGCACTGTGGGG+CGG | - | chr2_1:4476906-4476925 | None:intergenic | 50.0% | |
| ATGGCATTTCCATGAGCACG+TGG | + | chr2_1:4476950-4476969 | Msa0189160:CDS | 50.0% | |
| CAGAACAGGCTGCTTACTGT+TGG | - | chr2_1:4477317-4477336 | None:intergenic | 50.0% | |
| !! | GTAAGCAGCCTGTTCTGAAG+TGG | + | chr2_1:4477320-4477339 | Msa0189160:CDS | 50.0% |
| !! | GTTCTAGGGAGCTGGCTTAT+TGG | + | chr2_1:4477590-4477609 | Msa0189160:intron | 50.0% |
| ! | TCTAGGGAGCTGGCTTATTG+GGG | + | chr2_1:4477592-4477611 | Msa0189160:intron | 50.0% |
| AACCACGTCCTCTGATGTTC+TGG | + | chr2_1:4477824-4477843 | Msa0189160:intron | 50.0% | |
| AACCAGAACATCAGAGGACG+TGG | - | chr2_1:4477829-4477848 | None:intergenic | 50.0% | |
| AAGTGGAGGACACATGCTGT+GGG | - | chr2_1:4477882-4477901 | None:intergenic | 50.0% | |
| AAAGTGGAGGACACATGCTG+TGG | - | chr2_1:4477883-4477902 | None:intergenic | 50.0% | |
| !! | TTGACTTGGGAGGTGAGATG+AGG | + | chr2_1:4478012-4478031 | Msa0189160:CDS | 50.0% |
| GTGAGATGAGGAGGGATGTT+TGG | + | chr2_1:4478024-4478043 | Msa0189160:CDS | 50.0% | |
| ! | GCAACGAGCAGTGCCATTAA+TGG | + | chr2_1:4478152-4478171 | Msa0189160:CDS | 50.0% |
| TCCAGGCCCTTCAACATTTG+CGG | + | chr2_1:4478186-4478205 | Msa0189160:CDS | 50.0% | |
| GAGAACTGAACGAGCTTGGT+AGG | - | chr2_1:4478227-4478246 | None:intergenic | 50.0% | |
| TGGGGAAGTCAACTGGTTAC+AGG | + | chr2_1:4478305-4478324 | Msa0189160:CDS | 50.0% | |
| !! | TCGACGGAAGTGTCTACTTG+CGG | + | chr2_1:4478405-4478424 | Msa0189160:CDS | 50.0% |
| ! | GAAGTGTCTACTTGCGGAAG+TGG | + | chr2_1:4478411-4478430 | Msa0189160:CDS | 50.0% |
| ! | GAAGTACTAGACCCCCAAGA+TGG | - | chr2_1:4478446-4478465 | None:intergenic | 50.0% |
| CTGCTCTTTCAGTGAGCGTT+AGG | - | chr2_1:4478535-4478554 | None:intergenic | 50.0% | |
| !! | TGAAAAGCTAAGGCACTGGG+AGG | + | chr2_1:4478853-4478872 | Msa0189160:CDS | 50.0% |
| AGAAACCCAACAGTCAGGTG+TGG | - | chr2_1:4478881-4478900 | None:intergenic | 50.0% | |
| CACCTGACTGTTGGGTTTCT+TGG | + | chr2_1:4478881-4478900 | Msa0189160:CDS | 50.0% | |
| GTCCAAGAAACCCAACAGTC+AGG | - | chr2_1:4478886-4478905 | None:intergenic | 50.0% | |
| ATGCTGATGATCACGGCTGT+TGG | + | chr2_1:4479217-4479236 | Msa0189160:CDS | 50.0% | |
| GCTGACAATCAGGAGCCTTA+AGG | + | chr2_1:4479243-4479262 | Msa0189160:CDS | 50.0% | |
| ATCAGGAGCCTTAAGGAGCA+AGG | + | chr2_1:4479250-4479269 | Msa0189160:CDS | 50.0% | |
| GTCTCTCAACCATTTCCCTC+CGG | - | chr2_1:4479685-4479704 | None:intergenic | 50.0% | |
| AAAACTGCTACTGGAGCAGC+AGG | - | chr2_1:4479743-4479762 | None:intergenic | 50.0% | |
| ACCACCAGGAAACCAAAGCA+AGG | + | chr2_1:4479826-4479845 | Msa0189160:CDS | 50.0% | |
| CCACCAGGAAACCAAAGCAA+GGG | + | chr2_1:4479827-4479846 | Msa0189160:CDS | 50.0% | |
| ATCCGGACTTACCCTTGCTT+TGG | - | chr2_1:4479841-4479860 | None:intergenic | 50.0% | |
| AGCTGAACGCACGACCTTCT+GGG | - | chr2_1:4475004-4475023 | None:intergenic | 55.0% | |
| TCAGCTCCTGCTATCAGCAC+GGG | + | chr2_1:4475018-4475037 | Msa0189160:intron | 55.0% | |
| TATCAGCACGGGGACCTCTT+TGG | + | chr2_1:4475029-4475048 | Msa0189160:intron | 55.0% | |
| ! | CAGGGTCTGAACTAGCCTCA+AGG | - | chr2_1:4475089-4475108 | None:intergenic | 55.0% |
| !! | GTAGGGCTTTGGAGCTCAAC+AGG | - | chr2_1:4475108-4475127 | None:intergenic | 55.0% |
| CGTATTGCTCCTGCAGTCTC+TGG | + | chr2_1:4476871-4476890 | Msa0189160:CDS | 55.0% | |
| TCAACCACACCAGAGACTGC+AGG | - | chr2_1:4476883-4476902 | None:intergenic | 55.0% | |
| GCTCTTGCCGGTGATCAAGA+TGG | + | chr2_1:4476931-4476950 | Msa0189160:CDS | 55.0% | |
| GTAAGCTAGCCACGTGCTCA+TGG | - | chr2_1:4476962-4476981 | None:intergenic | 55.0% | |
| ! | TAGGTCGAATTGGTGGGTGC+TGG | + | chr2_1:4477983-4478002 | Msa0189160:intron | 55.0% |
| ACTTGGGAGGTGAGATGAGG+AGG | + | chr2_1:4478015-4478034 | Msa0189160:CDS | 55.0% | |
| CTTGGGAGGTGAGATGAGGA+GGG | + | chr2_1:4478016-4478035 | Msa0189160:CDS | 55.0% | |
| TCCGCAAATGTTGAAGGGCC+TGG | - | chr2_1:4478190-4478209 | None:intergenic | 55.0% | |
| AGGAGCCACACCTGACTGTT+GGG | + | chr2_1:4478873-4478892 | Msa0189160:CDS | 55.0% | |
| GCCGTGATCATCAGCATCAC+TGG | - | chr2_1:4479214-4479233 | None:intergenic | 55.0% | |
| TTAAGGAGCAAGGCCGCCTT+GGG | + | chr2_1:4479260-4479279 | Msa0189160:CDS | 55.0% | |
| CGCCAAAAAATCGCCCAAGG+CGG | - | chr2_1:4479276-4479295 | None:intergenic | 55.0% | |
| !!! | CGCCTTGGGCGATTTTTTGG+CGG | + | chr2_1:4479274-4479293 | Msa0189160:CDS | 55.0% |
| CTCCGCCAAAAAATCGCCCA+AGG | - | chr2_1:4479279-4479298 | None:intergenic | 55.0% | |
| ! | CCCTTGCTTTGGTTTCCTGG+TGG | - | chr2_1:4479830-4479849 | None:intergenic | 55.0% |
| GAGCTGAACGCACGACCTTC+TGG | - | chr2_1:4475005-4475024 | None:intergenic | 60.0% | |
| CAGCTCCTGCTATCAGCACG+GGG | + | chr2_1:4475019-4475038 | Msa0189160:intron | 60.0% | |
| AGCACGGGGACCTCTTTGGT+GGG | + | chr2_1:4475033-4475052 | Msa0189160:intron | 60.0% | |
| TGCTCCTGCAGTCTCTGGTG+TGG | + | chr2_1:4476876-4476895 | Msa0189160:CDS | 60.0% | |
| GAGGAGCCACACCTGACTGT+TGG | + | chr2_1:4478872-4478891 | Msa0189160:CDS | 60.0% | |
| CAAGGCGGCCTTGCTCCTTA+AGG | - | chr2_1:4479261-4479280 | None:intergenic | 60.0% | |
| CTTAAGGAGCAAGGCCGCCT+TGG | + | chr2_1:4479259-4479278 | Msa0189160:CDS | 60.0% | |
| !!! | GGCCGCCTTGGGCGATTTTT+TGG | + | chr2_1:4479271-4479290 | Msa0189160:CDS | 60.0% |
| TCACACGCGAGCTCGAGTTC+CGG | + | chr2_1:4479663-4479682 | Msa0189160:CDS | 60.0% | |
| GCTCGAGTTCCGGAGGGAAA+TGG | + | chr2_1:4479673-4479692 | Msa0189160:CDS | 60.0% | |
| ! | GAGGTCCCCGTGCTGATAGC+AGG | - | chr2_1:4475027-4475046 | None:intergenic | 65.0% |
| CAGCACGGGGACCTCTTTGG+TGG | + | chr2_1:4475032-4475051 | Msa0189160:intron | 65.0% | |
| ACGCGAGCTCGAGTTCCGGA+GGG | + | chr2_1:4479667-4479686 | Msa0189160:CDS | 65.0% | |
| CACGCGAGCTCGAGTTCCGG+AGG | + | chr2_1:4479666-4479685 | Msa0189160:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 4473810 | 4480148 | 4473810 | ID=Msa0189160;Name=Msa0189160 |
| chr2_1 | mRNA | 4473810 | 4480148 | 4473810 | ID=Msa0189160-mRNA-1;Parent=Msa0189160;Name=Msa0189160-mRNA-1;_AED=0.06;_eAED=0.06;_QI=202|1|1|1|0.90|0.83|12|286|815 |
| chr2_1 | exon | 4473810 | 4473868 | 4473810 | ID=Msa0189160-mRNA-1:exon:1965;Parent=Msa0189160-mRNA-1 |
| chr2_1 | exon | 4473889 | 4474206 | 4473889 | ID=Msa0189160-mRNA-1:exon:1966;Parent=Msa0189160-mRNA-1 |
| chr2_1 | exon | 4475422 | 4475650 | 4475422 | ID=Msa0189160-mRNA-1:exon:1967;Parent=Msa0189160-mRNA-1 |
| chr2_1 | exon | 4476149 | 4476296 | 4476149 | ID=Msa0189160-mRNA-1:exon:1968;Parent=Msa0189160-mRNA-1 |
| chr2_1 | exon | 4476536 | 4476634 | 4476536 | ID=Msa0189160-mRNA-1:exon:1969;Parent=Msa0189160-mRNA-1 |
| chr2_1 | exon | 4476841 | 4476998 | 4476841 | ID=Msa0189160-mRNA-1:exon:1970;Parent=Msa0189160-mRNA-1 |
| chr2_1 | exon | 4477237 | 4477402 | 4477237 | ID=Msa0189160-mRNA-1:exon:1971;Parent=Msa0189160-mRNA-1 |
| chr2_1 | exon | 4477597 | 4477733 | 4477597 | ID=Msa0189160-mRNA-1:exon:1972;Parent=Msa0189160-mRNA-1 |
| chr2_1 | exon | 4477986 | 4478655 | 4477986 | ID=Msa0189160-mRNA-1:exon:1973;Parent=Msa0189160-mRNA-1 |
| chr2_1 | exon | 4478815 | 4478927 | 4478815 | ID=Msa0189160-mRNA-1:exon:1974;Parent=Msa0189160-mRNA-1 |
| chr2_1 | exon | 4479189 | 4479444 | 4479189 | ID=Msa0189160-mRNA-1:exon:1975;Parent=Msa0189160-mRNA-1 |
| chr2_1 | exon | 4479566 | 4480148 | 4479566 | ID=Msa0189160-mRNA-1:exon:1976;Parent=Msa0189160-mRNA-1 |
| chr2_1 | five_prime_UTR | 4473810 | 4473868 | 4473810 | ID=Msa0189160-mRNA-1:five_prime_utr;Parent=Msa0189160-mRNA-1 |
| chr2_1 | five_prime_UTR | 4473889 | 4474031 | 4473889 | ID=Msa0189160-mRNA-1:five_prime_utr;Parent=Msa0189160-mRNA-1 |
| chr2_1 | CDS | 4474032 | 4474206 | 4474032 | ID=Msa0189160-mRNA-1:cds;Parent=Msa0189160-mRNA-1 |
| chr2_1 | CDS | 4475422 | 4475650 | 4475422 | ID=Msa0189160-mRNA-1:cds;Parent=Msa0189160-mRNA-1 |
| chr2_1 | CDS | 4476149 | 4476296 | 4476149 | ID=Msa0189160-mRNA-1:cds;Parent=Msa0189160-mRNA-1 |
| chr2_1 | CDS | 4476536 | 4476634 | 4476536 | ID=Msa0189160-mRNA-1:cds;Parent=Msa0189160-mRNA-1 |
| chr2_1 | CDS | 4476841 | 4476998 | 4476841 | ID=Msa0189160-mRNA-1:cds;Parent=Msa0189160-mRNA-1 |
| chr2_1 | CDS | 4477237 | 4477402 | 4477237 | ID=Msa0189160-mRNA-1:cds;Parent=Msa0189160-mRNA-1 |
| chr2_1 | CDS | 4477597 | 4477733 | 4477597 | ID=Msa0189160-mRNA-1:cds;Parent=Msa0189160-mRNA-1 |
| chr2_1 | CDS | 4477986 | 4478655 | 4477986 | ID=Msa0189160-mRNA-1:cds;Parent=Msa0189160-mRNA-1 |
| chr2_1 | CDS | 4478815 | 4478927 | 4478815 | ID=Msa0189160-mRNA-1:cds;Parent=Msa0189160-mRNA-1 |
| chr2_1 | CDS | 4479189 | 4479444 | 4479189 | ID=Msa0189160-mRNA-1:cds;Parent=Msa0189160-mRNA-1 |
| chr2_1 | CDS | 4479566 | 4479862 | 4479566 | ID=Msa0189160-mRNA-1:cds;Parent=Msa0189160-mRNA-1 |
| chr2_1 | three_prime_UTR | 4479863 | 4480148 | 4479863 | ID=Msa0189160-mRNA-1:three_prime_utr;Parent=Msa0189160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
